Citrus Sinensis ID: 007628

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-----
Protein Sequence
MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPPVIPYY
Secondary Structure (PSIPRED)
ccEEcccccccccccccccEEEccccccEEcccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHccccccEEccccccEEccccccccccccEEEcccccccccccHHHHHHHHHHcHHccccccccccccHHHcccccccEEEcccccccccccHHccccccccEEEccccccEEcccHHccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccEEEEcccccccccccHHHccccEEEEEcccccccccccHHHHHHHHHccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccHHEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEccccccHHccccccccccccccccccEEcccccccccccccccccccccccEEEcccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccEccc
Coil and Loop (DISEMBL)
mgvfcarspfnspslrVVASIdlnhadiagylppeigrlTDLAIFHinsnrfcgvvpsTFRRLKLLYEVdlsnnrfvgkfpklflslpklkyldlrfnefegsvpsklfdkdldaiflndnrfqfgipenlgnspvSVLVFANndlggcipgsigkmgKTLNEIILMndnltgclppqigmlknlTVFDVSfnhlqgslpssignmkSLEQLNVAHNrftgvipssvcqlpnlqnftysfnyftgeppsctaaaggggrmmaarpadcskmqcgrgggsggsgwggspapatsprssppssssppppkrkppvvkpvpaprpanspgpfirpsppppptsksspstrshptppppansppksfhsppsppppppthkesprthlpptpppvynvspspkhfppppshyhntpppptkkaspsthyappppprfyyvpkqsppppppveyypppyqqhmapppppgesaevpapsyfayspppppardenpvapatpgapveyyppkkgnpppapeyyhaspppsgcdiippshhhnppswhhqtppspnyhsyavppppspspptpppspydntplppiigvsyasppppvipyy
Flexible Loop (DISEMBL)
mgvfcarspfnspsLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVdlsnnrfvgkFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPrssppssssppppkrkppvvKPVPAPRPANspgpfirpsppppPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSyasppppvIPYY
Low Complexity Region (SEG)
MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGkfpklflslpklkyldlRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTaaaggggrmmaarPADCSKMQCgrgggsggsgwggspapatsprssppssssppppkrkppvvkpvpaprpANspgpfirpsppppptsksspstrshptppppansppksfhsppsppppppthkesprthlpptpppvynvspspkhfppppshyhntpppptkkaspstHYApppppRFyyvpkqsppppppveyypppyqqhmapppppgesaevpapsyfayspppppaRDENPVAPATPGAPVEYYppkkgnpppapEYYHASPPPSGCDIIppshhhnppswhhQTPPSPNYHSYAVppppspspptpppspydntplppIIGVSYASPPPPVIPYY
Disordered region (IsUnstruct)
************PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE*************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSG***************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAGGGGRMMAARPADCSKMQ******************************************KPVPAPRPANSPGPFIRPS**************************************************LPPTPPPVYNVSPSPKHFPPPP********************APPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHH***********PSPNYHSY****************PYDNTPLPPIIGVSYASPPPPVIPYY
Disordered Region (DISPRO)
*GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPP***************T*PPP*****KSFHSPPSP*************HLPPTPPPVYNVSPSPKHFPPPPSHYHNT*P**TK****STHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPPVIPYY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPPVIPYY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	595	2.2.26 [Sep-21-2011]
O48809	786	Leucine-rich repeat exten	yes	no	0.455	0.344	0.713	1e-119
O65375	744	Leucine-rich repeat exten	no	no	0.455	0.364	0.675	1e-113
Q9SN46	857	Leucine-rich repeat exten	no	no	0.457	0.317	0.613	1e-98
Q9LHF1	494	Leucine-rich repeat exten	no	no	0.453	0.546	0.627	4e-98
Q9T0K5	760	Leucine-rich repeat exten	no	no	0.457	0.357	0.592	2e-97
Q9LUI1	470	Leucine-rich repeat exten	no	no	0.455	0.576	0.610	2e-94
Q9XIB6	847	Pollen-specific leucine-r	no	no	0.453	0.318	0.532	5e-94
Q9LJ64	956	Pollen-specific leucine-r	no	no	0.455	0.283	0.517	8e-92
Q4PSE6	433	Leucine-rich repeat exten	no	no	0.455	0.625	0.532	1e-88
O81765	699	Pollen-specific leucine-r	no	no	0.586	0.499	0.452	2e-88

>sp|O48809|LRX2_ARATH Leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana GN=LRX2 PE=1 SV=1

 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/293 (71%), Positives = 234/293 (79%), Gaps = 22/293 (7%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           G+FCA SP +SP  RVVA IDLNHAD+AGYLP E+G LTDLA+FH+NSNRFCG VP TF+
Sbjct: 88  GIFCAPSP-SSPKTRVVAGIDLNHADMAGYLPRELGLLTDLALFHLNSNRFCGEVPLTFK 146

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
            +KLL+E+DLSNNRFVGKFP + LSLP LK+LDLR+NEFEGS+PSKLFDK+LDAIFLN N
Sbjct: 147 HMKLLFELDLSNNRFVGKFPNVVLSLPSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHN 206

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF FGIPEN+GNSPVS LV A+NDLGGCIPGSIG MGKTLNEIIL NDNLTGCLPPQIG 
Sbjct: 207 RFMFGIPENMGNSPVSALVLADNDLGGCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGN 266

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           LKN+TVFD+SFN L G LPSSIGNMKSLEQLNVA+NRFTGVIPSS+CQL NL+NFTYS N
Sbjct: 267 LKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSICQLSNLENFTYSSN 326

Query: 242 YFTGEPPSCTAAAGG----GGRMM-----------------AARPADCSKMQC 273
           +FTG+ P C A  G      G M                  A+R  DCSK  C
Sbjct: 327 FFTGDAPRCVALLGDNVVVNGSMNCIDGKEDQRSSKECSSPASRSVDCSKFGC 379

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation.
Arabidopsis thaliana (taxid: 3702)

>sp|O65375|LRX1_ARATH Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=LRX1 PE=1 SV=1

 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 198/293 (67%), Positives = 232/293 (79%), Gaps = 22/293 (7%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           G++CA SP + P  RVVA IDLNHAD+AGYL  E+G L+DLA+FHINSNRFCG VP TF 
Sbjct: 86  GIYCAPSP-SYPKTRVVAGIDLNHADMAGYLASELGLLSDLALFHINSNRFCGEVPLTFN 144

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
           R+KLLYE+DLSNNRFVGKFPK+ LSLP LK+LDLR+NEFEG +PSKLFD++LDAIFLN N
Sbjct: 145 RMKLLYELDLSNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHN 204

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF+FGIP+N+GNSPVS LV A+N+LGGCIPGSIG+MGKTLNE+IL NDNLTGCLPPQIG 
Sbjct: 205 RFRFGIPKNMGNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGN 264

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           LK +TVFD++ N LQG LPSS+GNMKSLE+L+VA+N FTGVIP S+CQL NL+NFTYS N
Sbjct: 265 LKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSN 324

Query: 242 YFTGEPPSCTAAAGG----GGRM-----------------MAARPADCSKMQC 273
           YF+G PP C A+        G M                 + ARP DCSK  C
Sbjct: 325 YFSGRPPICAASLLADIVVNGTMNCITGLARQRSDKQCSSLLARPVDCSKFGC 377

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN46|LRX5_ARATH Leucine-rich repeat extensin-like protein 5 OS=Arabidopsis thaliana GN=LRX5 PE=2 SV=2

 Score =  361 bits (926), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 179/292 (61%), Positives = 211/292 (72%), Gaps = 20/292 (6%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           GV+CA    ++  +R VA IDLNHADIAGYLP E+G LTDLA+FHINSNRFCG VP  F 
Sbjct: 113 GVYCA-PALDNRRIRTVAGIDLNHADIAGYLPQELGLLTDLALFHINSNRFCGTVPHRFN 171

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
           RLKLL+E+DLSNNRF G FP + L LP LK+LDLRFNEFEG VP +LF KDLDAIF+N N
Sbjct: 172 RLKLLFELDLSNNRFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHN 231

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF+F +P+NLG+SPVSV+V ANN   GCIP S+G M + L EII M +    CLP QIG 
Sbjct: 232 RFRFELPDNLGDSPVSVIVVANNHFHGCIPTSLGDM-RNLEEIIFMENGFNSCLPSQIGR 290

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           LKN+TVFD SFN L GSLP+SIG M S+EQLNVAHNRF+G IP+++CQLP L+NFT+S+N
Sbjct: 291 LKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYN 350

Query: 242 YFTGEPPSCTAAAGGGGR--MMAARPA----------------DCSKMQCGR 275
           +FTGEPP C    G   R   + ARPA                DC    CGR
Sbjct: 351 FFTGEPPVCLGLPGFDDRRNCLPARPAQRSPGQCAAFSSLPPVDCGSFGCGR 402

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHF1|LRX4_ARATH Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=LRX4 PE=1 SV=1

 Score =  359 bits (921), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 172/274 (62%), Positives = 208/274 (75%), Gaps = 4/274 (1%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           GVFC+++  ++  +R VA IDLNHADIAGYLP E+G LTDLA+FH+NSNRFCG VP  F+
Sbjct: 109 GVFCSKA-LDNRKIRTVAGIDLNHADIAGYLPEELGLLTDLALFHVNSNRFCGTVPHKFK 167

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
           +LKLL+E+DLSNNRF GKFP + L LP LK+LDLRFNEFEG+VP +LF K+LDAIF+N N
Sbjct: 168 QLKLLFELDLSNNRFAGKFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHN 227

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF+F +PEN G+SPVSV+V ANN   GCIP S+ +M K LNEII MN+ L  CLP  IG 
Sbjct: 228 RFRFELPENFGDSPVSVIVLANNHFHGCIPTSLVEM-KNLNEIIFMNNGLNSCLPADIGR 286

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           LKN+TVFDVSFN L G LP S+G M  +EQLNVAHN  +G IP+S+CQLP L+NFTYS+N
Sbjct: 287 LKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKIPASICQLPKLENFTYSYN 346

Query: 242 YFTGEPPSCTAAAGGGGRMMA--ARPADCSKMQC 273
           +FTGE P C   +    R      RPA  S  QC
Sbjct: 347 FFTGEAPVCLRLSEFDDRRNCLPGRPAQRSSRQC 380

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9T0K5|LRX3_ARATH Leucine-rich repeat extensin-like protein 3 OS=Arabidopsis thaliana GN=LRX3 PE=1 SV=1

 Score =  356 bits (914), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 173/292 (59%), Positives = 209/292 (71%), Gaps = 20/292 (6%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           GVFC+    ++  +R VA IDLNHADIAGYLP E+G L+DLA+FH+NSNRFCG VP  F 
Sbjct: 101 GVFCS-PALDNRKIRTVAGIDLNHADIAGYLPEELGLLSDLALFHVNSNRFCGTVPHRFN 159

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
           RLKLL+E+DLSNNRF GKFP + L LP LK+LDLRFNEFEG+VP +LF KDLDAIF+N N
Sbjct: 160 RLKLLFELDLSNNRFAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHN 219

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF+F +PEN G+SPVSV+V ANN   GC+P S+ +M K LNEII MN+ L  CLP  IG 
Sbjct: 220 RFRFELPENFGDSPVSVIVLANNRFHGCVPSSLVEM-KNLNEIIFMNNGLNSCLPSDIGR 278

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           LKN+TVFDVSFN L G LP S+G M S+EQLNVAHN  +G IP+S+CQLP L+NFTYS+N
Sbjct: 279 LKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLSGKIPASICQLPKLENFTYSYN 338

Query: 242 YFTGEPPSC-----------------TAAAGGGGRMMAAR-PADCSKMQCGR 275
           +FTGE P C                    + G  +   +R P +C    CGR
Sbjct: 339 FFTGEAPVCLRLPEFDDRRNCLPGRPAQRSPGQCKAFLSRPPVNCGSFSCGR 390

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUI1|LRX6_ARATH Leucine-rich repeat extensin-like protein 6 OS=Arabidopsis thaliana GN=LRX6 PE=2 SV=1

 Score =  347 bits (890), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 168/275 (61%), Positives = 215/275 (78%), Gaps = 4/275 (1%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           GVFCA +  ++P +  VA IDLNHA+IAGYLP E+G LTDLA+FHINSNRF G +P T +
Sbjct: 86  GVFCAPA-LDNPYVLTVAGIDLNHANIAGYLPLELGLLTDLALFHINSNRFQGQLPKTLK 144

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
            L LL+E+D+SNN+  G+FP +  SLP LK+LD+RFNEF+G VPS+LFD +LDA+F+NDN
Sbjct: 145 CLHLLHELDVSNNKLSGEFPSVIFSLPSLKFLDIRFNEFQGDVPSQLFDLNLDALFINDN 204

Query: 122 RFQFGIPENLGNSPVSVLVFANNDL-GGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIG 180
           +FQF +P N+GNSPVSVLV ANNDL G C+P S  KMGKTL+EII+ N  LTGCL  +IG
Sbjct: 205 KFQFRLPRNIGNSPVSVLVLANNDLQGSCVPPSFYKMGKTLHEIIITNSQLTGCLNREIG 264

Query: 181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF 240
           +L  LTVFDVS+N+L GSLP +IG+MKSLEQLN+AHN+F+G IP S+C+LP L+NFTYS+
Sbjct: 265 LLNQLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFSGYIPESICRLPRLENFTYSY 324

Query: 241 NYFTGEPPSCTAAAGGGGR--MMAARPADCSKMQC 273
           N+F+GEPP+C        R   + +RP   S  +C
Sbjct: 325 NFFSGEPPACLRLQEFDDRRNCLPSRPMQRSLAEC 359

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIB6|PLRX2_ARATH Pollen-specific leucine-rich repeat extensin-like protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1

 Score =  345 bits (885), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 156/293 (53%), Positives = 205/293 (69%), Gaps = 23/293 (7%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           GV+CA +  +  SL VVA +DLNHADIAG+LPPE+G +TDLA+FHINSNRFCG++P +  
Sbjct: 94  GVYCAPA-LDDDSLTVVAGVDLNHADIAGHLPPELGLMTDLALFHINSNRFCGIIPKSLS 152

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
           +L L+YE D+SNNRFVG+FP++ LS P LK+LDLR+NEFEGS+PS++FDKDLDAIFLN+N
Sbjct: 153 KLALMYEFDVSNNRFVGQFPEVSLSWPSLKFLDLRYNEFEGSLPSEIFDKDLDAIFLNNN 212

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF+  IP  +G S  SV+ FANN   GCIP SIG M K LNEI+   +NLTGC P +IG+
Sbjct: 213 RFESVIPGTIGKSKASVVTFANNKFSGCIPKSIGNM-KNLNEIVFTGNNLTGCFPNEIGL 271

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           L N+TVFD S N   GSLPS++  + S+EQL+++HN+ TG +    C+LPNL +F +S+N
Sbjct: 272 LNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLDSFKFSYN 331

Query: 242 YFTGEPPSCTAAAGGGGRM---------------------MAARPADCSKMQC 273
           +F GE  SC      G +                      + +RP DCSK +C
Sbjct: 332 FFNGEAESCVPGRNNGKQFDDTNNCLQNRPSQKPAKQCLPVVSRPVDCSKDKC 384

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ64|PLRX1_ARATH Pollen-specific leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=PEX1 PE=2 SV=1

 Score =  338 bits (867), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 152/294 (51%), Positives = 207/294 (70%), Gaps = 23/294 (7%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           GVFCA +  + PS+ VVA IDLNHADIAGYLPPE+G LTD+A+FH+NSNRFCGV+P +  
Sbjct: 107 GVFCAPA-LDDPSVLVVAGIDLNHADIAGYLPPELGLLTDVALFHVNSNRFCGVIPKSLS 165

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
           +L L+YE D+SNNRFVG FP + LS P LK+LD+R+N+FEG +P ++FDKDLDAIFLN+N
Sbjct: 166 KLTLMYEFDVSNNRFVGPFPTVALSWPSLKFLDIRYNDFEGKLPPEIFDKDLDAIFLNNN 225

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF+  IPE +G S  SV+ FA+N   GCIP +IG+M K LNEI+ + +NL+GCLP +IG 
Sbjct: 226 RFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQM-KNLNEIVFIGNNLSGCLPNEIGS 284

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           L N+TVFD S N   GSLPS++  + ++EQ++ ++N+FTG +  ++C+LP L NFT+S+N
Sbjct: 285 LNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDNICKLPKLSNFTFSYN 344

Query: 242 YFTGEPPSCTAAAGGGGRM---------------------MAARPADCSKMQCG 274
           +F GE  SC   +    +                      + +RP DCSK +C 
Sbjct: 345 FFNGEAQSCVPGSSQEKQFDDTSNCLQNRPNQKSAKECLPVVSRPVDCSKDKCA 398

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSE6|LRX7_ARATH Leucine-rich repeat extensin-like protein 7 OS=Arabidopsis thaliana GN=LRX7 PE=2 SV=1

 Score =  327 bits (839), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/289 (53%), Positives = 201/289 (69%), Gaps = 18/289 (6%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           GV C+ S  + P ++ V+ +DLN  DIAG+LP E+G LTD+A+FH+NSNRFCG +P  F 
Sbjct: 86  GVVCSES-LDDPLVKTVSGVDLNQGDIAGHLPEELGLLTDIALFHVNSNRFCGTLPVGFS 144

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
           +L LL+E+DLSNNRF GKFP++ + LPKLKYLDLR+NEFEG +P  LFDKDLDA+FLN N
Sbjct: 145 QLSLLFELDLSNNRFAGKFPEVVIGLPKLKYLDLRYNEFEGELPESLFDKDLDALFLNSN 204

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF+  IP N+GNSPVSVLV A+N   GCIP S GKMGKTLNEIILM++ L  C+P  +G+
Sbjct: 205 RFRSKIPVNMGNSPVSVLVLASNRFEGCIPPSFGKMGKTLNEIILMDNGLQSCIPNDMGL 264

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           L+N+TV D+S+N L G LP S+G M++LE LNV  N  +G+IP  +C L  L++F Y  N
Sbjct: 265 LQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLSGLIPDELCSLEKLRDFRYGSN 324

Query: 242 YFTGEPPSC-----------------TAAAGGGGRMMAARPADCSKMQC 273
           YFTGEP +C                    +    +M  ++P DC   +C
Sbjct: 325 YFTGEPATCRYLENYNYTMNCFKDVRDQRSMMECKMFLSKPVDCDSFKC 373

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

>sp|O81765|PLRX4_ARATH Pollen-specific leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=PEX4 PE=2 SV=1

 Score =  327 bits (838), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 187/413 (45%), Positives = 242/413 (58%), Gaps = 64/413 (15%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           GV CA +  +   + VVA +DLN ADIAG+LP E+G +TD+A+FH+NSNRFCG++P +F 
Sbjct: 121 GVVCAPA-LDDSDVTVVAGVDLNGADIAGHLPAELGLMTDVAMFHLNSNRFCGIIPKSFE 179

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
           +LKL++E D+SNNRFVG FP + LS P +KY DLRFN+FEG VP +LF K+LDAIFLNDN
Sbjct: 180 KLKLMHEFDVSNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVPPELFKKELDAIFLNDN 239

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF   IPE+LG SP SV+ FANN   GCIP SIG M K LNEI+ M+++L GC P +IG 
Sbjct: 240 RFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNM-KNLNEIVFMDNDLGGCFPSEIGK 298

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           L N+TVFD S N   G LP+S   + S+E+++++ N+ TG++P ++CQLPNL N TYS+N
Sbjct: 299 LSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHNICQLPNLVNLTYSYN 358

Query: 242 YFTGEPPSCTAAAGGGGRMMAA-------------------------RPADCSKMQCGRG 276
           YF+G+  SC     GG R   A                         RP DCSK +C   
Sbjct: 359 YFSGQGGSCVP---GGSRKEIALDDTRNCLASRPEQRSAQECAVVINRPVDCSKDKCA-- 413

Query: 277 GGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPP 336
                   GGS  P      S PS    P P    PV KP P P       P  +PSP P
Sbjct: 414 --------GGSSTP------SKPSPVHKPTPVPTTPVHKPTPVPTT-----PVQKPSPVP 454

Query: 337 PPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTH--------KESPR 381
                ++P  +  P P  P + P     +P   P P P+         KESP+
Sbjct: 455 -----TTPVQKPSPVPTTPVHEPSPVLATPVDKPSPVPSRPVQKPQPPKESPQ 502

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	595
224087373	525	predicted protein [Populus trichocarpa]	0.457	0.518	0.776	1e-129
255546868	766	LRX2, putative [Ricinus communis] gi|223	0.519	0.403	0.719	1e-129
224118538	481	predicted protein [Populus trichocarpa]	0.467	0.577	0.754	1e-126
359483094	610	PREDICTED: leucine-rich repeat extensin-	0.482	0.470	0.717	1e-124
127058161	725	leucine-rich repeat/extensin [Nicotiana	0.452	0.371	0.707	1e-117
75318316	786	RecName: Full=Leucine-rich repeat extens	0.455	0.344	0.713	1e-117
15220780	826	leucine-rich repeat/extensin 2 [Arabidop	0.455	0.328	0.713	1e-117
297840287	713	hypothetical protein ARALYDRAFT_475099 [	0.455	0.380	0.709	1e-117
127058169	723	leucine-rich repeat/extensin 1 [Nicotian	0.452	0.372	0.697	1e-116
15221178	744	leucine-rich repeat extensin-like protei	0.455	0.364	0.675	1e-111

>gi|224087373|ref|XP_002308141.1| predicted protein [Populus trichocarpa] gi|222854117|gb|EEE91664.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/291 (77%), Positives = 246/291 (84%), Gaps = 19/291 (6%)

Query: 1   MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTF 60
           MG+FCA SP N   +RVVA IDLNHADIAGYLP E+G LTDLA+FHINSNRFCGVVP++F
Sbjct: 83  MGIFCAPSPQNK-KVRVVAGIDLNHADIAGYLPTELGLLTDLALFHINSNRFCGVVPNSF 141

Query: 61  RRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLND 120
            ++KLL+E+DLSNNRFVGKFPK+ LSLP LKYLDLRFNEFEGSVPS+LFDK LDAIFLND
Sbjct: 142 SKMKLLHELDLSNNRFVGKFPKVVLSLPSLKYLDLRFNEFEGSVPSQLFDKPLDAIFLND 201

Query: 121 NRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIG 180
           NRFQFGIPENLGNSPVSVLVFANN+LGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIG
Sbjct: 202 NRFQFGIPENLGNSPVSVLVFANNNLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIG 261

Query: 181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF 240
           MLK +TVFDVSFNHLQGSLPSSIGNMKS+EQL++AHN FTG IP+SVCQLPNLQNFT+SF
Sbjct: 262 MLKEVTVFDVSFNHLQGSLPSSIGNMKSVEQLDIAHNSFTGAIPASVCQLPNLQNFTFSF 321

Query: 241 NYFTGEPPSCTAAAGGGGRMM------------------AARPADCSKMQC 273
           NYFTGE PSC A  G                        AARP DCSK +C
Sbjct: 322 NYFTGEAPSCAAIGGVSNGTQNCIPGKTNQRSAKQCSSEAARPVDCSKFKC 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546868|ref|XP_002514492.1| LRX2, putative [Ricinus communis] gi|223546391|gb|EEF47892.1| LRX2, putative [Ricinus communis]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/335 (71%), Positives = 268/335 (80%), Gaps = 26/335 (7%)

Query: 1   MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTF 60
           MGVFCA SP N P +RVVA IDLNHADIAGYLPPE+G LTDLA+FH+NSNRFCGVVP+TF
Sbjct: 84  MGVFCAPSPSN-PKIRVVAGIDLNHADIAGYLPPELGLLTDLALFHLNSNRFCGVVPATF 142

Query: 61  RRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLND 120
           R+LKLL+E+DLSNNRFVGKFPK+ LSLP LKYLDLRFNEFEGSVPS LFD+ LDAIFLND
Sbjct: 143 RKLKLLHELDLSNNRFVGKFPKVLLSLPSLKYLDLRFNEFEGSVPSNLFDRPLDAIFLND 202

Query: 121 NRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIG 180
           NRFQFGIPENLGNSPVSVLV ANN+LGGCIPGSIG MGKTLNEIILMNDNLTGCLPP+IG
Sbjct: 203 NRFQFGIPENLGNSPVSVLVLANNNLGGCIPGSIGNMGKTLNEIILMNDNLTGCLPPEIG 262

Query: 181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF 240
           +LK LTVFDVSFN+LQGSLPSSIGNMK +EQL++AHN FTGV+P+S+CQLP+LQNFTYSF
Sbjct: 263 LLKELTVFDVSFNNLQGSLPSSIGNMKKVEQLDIAHNSFTGVVPASICQLPSLQNFTYSF 322

Query: 241 NYFTGEPPSCTAAAGGGGRMMA-----------------------ARPADCSKMQCGRGG 277
           NYFTGE PSC  AA GG R++                        ARP +CSK +CG   
Sbjct: 323 NYFTGEAPSC--AAIGGSRVLTKGTKNCIPGKMDQRSAKECSSEKARPVNCSKFKCGGSS 380

Query: 278 GSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPP 312
           G GG G G     + SPR  P    +PP PK  PP
Sbjct: 381 GGGGGGGGSGSGSSPSPRRKPRPVGNPPSPKLAPP 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118538|ref|XP_002331387.1| predicted protein [Populus trichocarpa] gi|222873601|gb|EEF10732.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/297 (75%), Positives = 249/297 (83%), Gaps = 19/297 (6%)

Query: 1   MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTF 60
           MGVFCA SP N   +RVVA IDLNHADIAGYLP E+G + DLA+ HINSNRFCGVVPS+F
Sbjct: 82  MGVFCAPSPKN-KKIRVVAGIDLNHADIAGYLPTELGLIIDLALLHINSNRFCGVVPSSF 140

Query: 61  RRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLND 120
           R++KLL+E+DLSNNR +GKFPK+ +SLP LKYLDLRFNEFEGSVPS+LFDK LDAIFLND
Sbjct: 141 RKMKLLHELDLSNNRLMGKFPKVVVSLPSLKYLDLRFNEFEGSVPSQLFDKPLDAIFLND 200

Query: 121 NRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIG 180
           NRF+FGIPENLGNSP SVLV ANN+LGGCIPGSIGKM KTLNEIILMNDNLTGCLPPQIG
Sbjct: 201 NRFRFGIPENLGNSPASVLVLANNNLGGCIPGSIGKMSKTLNEIILMNDNLTGCLPPQIG 260

Query: 181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF 240
           MLK +TVFDVSFNHLQG+LPSSIGNMKS+EQL++AHN FTGV+P+SV QLPNLQNFTYSF
Sbjct: 261 MLKEVTVFDVSFNHLQGALPSSIGNMKSVEQLDIAHNSFTGVVPASVYQLPNLQNFTYSF 320

Query: 241 NYFTGEPPSCTA--AAGGG------GRM----------MAARPADCSKMQCGRGGGS 279
           NYFTGE PSC A  A   G      G+M           AARP DCSK +CG  GG+
Sbjct: 321 NYFTGEAPSCAAIGAVSNGTQNCIPGKMNQRSAKQCSSEAARPIDCSKFKCGGSGGA 377

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483094|ref|XP_002274545.2| PREDICTED: leucine-rich repeat extensin-like protein 2-like [Vitis vinifera]

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/304 (71%), Positives = 249/304 (81%), Gaps = 17/304 (5%)

Query: 1   MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTF 60
           MGV+CA S  ++PSL+VVA IDLNHADIAGYLP E+G L+DLA+FH+NSNRFCG+VPS+ 
Sbjct: 78  MGVYCAPS-LSNPSLKVVAGIDLNHADIAGYLPSELGLLSDLALFHLNSNRFCGIVPSSL 136

Query: 61  RRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLND 120
           +R+KLLYE+D+SNNRFVG FP + LS+P LK+LDLRFNEFEG VPS+LF+KDLDA+FLND
Sbjct: 137 KRMKLLYELDISNNRFVGSFPNVVLSMPSLKFLDLRFNEFEGPVPSQLFNKDLDAVFLND 196

Query: 121 NRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIG 180
           NRFQFGIP+NLGNSPVSVLV ANN+LGGCIPGSIGKMGKTLNEIILMNDNLT CLPPQIG
Sbjct: 197 NRFQFGIPQNLGNSPVSVLVLANNNLGGCIPGSIGKMGKTLNEIILMNDNLTSCLPPQIG 256

Query: 181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF 240
           +LK +TVFDVSFNHLQGSLP +IG MKSLEQL+VAHN FTG IP S+CQLP L+NFTYSF
Sbjct: 257 LLKEVTVFDVSFNHLQGSLPPAIGKMKSLEQLDVAHNSFTGAIPPSICQLPRLENFTYSF 316

Query: 241 NYFTGEPPSCTAAAGGGGR----------------MMAARPADCSKMQCGRGGGSGGSGW 284
           NYFTGE P C A  G G +                  AARP DCSK +CG G  + G   
Sbjct: 317 NYFTGEAPVCAAITGDGRQNCIPGKTDQRSSSMCSSQAARPVDCSKSKCGGGSTNAGGSP 376

Query: 285 GGSP 288
           GGSP
Sbjct: 377 GGSP 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|127058161|dbj|BAF48663.1| leucine-rich repeat/extensin [Nicotiana plumbaginifolia] gi|127058167|dbj|BAF48664.1| leucine-rich repeat/extensin [Nicotiana plumbaginifolia]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/294 (70%), Positives = 234/294 (79%), Gaps = 25/294 (8%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           GVFCA+S  N  S+RVVA IDLNHADIAGYL PE+G LTDL +FH+NSNRFCG+VP TF 
Sbjct: 85  GVFCAQSLTND-SIRVVAGIDLNHADIAGYLVPELGLLTDLVLFHLNSNRFCGIVPKTFS 143

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
            LKLL E+DLSNNRFVG FPK+ LSLP LK+LDLRFN+FEG VPSKLFDKDLDA+FLNDN
Sbjct: 144 HLKLLRELDLSNNRFVGGFPKVVLSLPSLKFLDLRFNDFEGPVPSKLFDKDLDALFLNDN 203

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF+FGIPENLGNSPVSVLVFANN+LGGCIP SIGKM  TLNE+ILMNDNLTGCLP +IGM
Sbjct: 204 RFRFGIPENLGNSPVSVLVFANNNLGGCIPASIGKMSNTLNELILMNDNLTGCLPMEIGM 263

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           LK LTVFDVSFN +QG LPS++  M+S+EQLNVAHN+ TGVIP+S+CQLP LQNFTYSFN
Sbjct: 264 LKKLTVFDVSFNKIQGPLPSTVSRMRSVEQLNVAHNKLTGVIPASICQLPRLQNFTYSFN 323

Query: 242 YFTGEPPSCTAAAGGGGRMM----------------------AARPADCSKMQC 273
           YFTGE P C  AA   GR++                       A+P DC K QC
Sbjct: 324 YFTGEAPVC--AATRSGRIVDGEENCIAGKEDQRSAKECSSDDAKPYDCRKSQC 375

Source: Nicotiana plumbaginifolia

Species: Nicotiana plumbaginifolia

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75318316|sp|O48809.1|LRX2_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 2; Short=AtLRX2; Short=LRR/EXTENSIN2; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precursor gi|5454187|gb|AAD43602.1|AC005698_1 T3P18.1 [Arabidopsis thaliana] gi|7940282|gb|AAF70841.1|AC003113_8 F24O1.18 [Arabidopsis thaliana]

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/293 (71%), Positives = 234/293 (79%), Gaps = 22/293 (7%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           G+FCA SP +SP  RVVA IDLNHAD+AGYLP E+G LTDLA+FH+NSNRFCG VP TF+
Sbjct: 88  GIFCAPSP-SSPKTRVVAGIDLNHADMAGYLPRELGLLTDLALFHLNSNRFCGEVPLTFK 146

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
            +KLL+E+DLSNNRFVGKFP + LSLP LK+LDLR+NEFEGS+PSKLFDK+LDAIFLN N
Sbjct: 147 HMKLLFELDLSNNRFVGKFPNVVLSLPSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHN 206

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF FGIPEN+GNSPVS LV A+NDLGGCIPGSIG MGKTLNEIIL NDNLTGCLPPQIG 
Sbjct: 207 RFMFGIPENMGNSPVSALVLADNDLGGCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGN 266

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           LKN+TVFD+SFN L G LPSSIGNMKSLEQLNVA+NRFTGVIPSS+CQL NL+NFTYS N
Sbjct: 267 LKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSICQLSNLENFTYSSN 326

Query: 242 YFTGEPPSCTAAAGG----GGRMM-----------------AARPADCSKMQC 273
           +FTG+ P C A  G      G M                  A+R  DCSK  C
Sbjct: 327 FFTGDAPRCVALLGDNVVVNGSMNCIDGKEDQRSSKECSSPASRSVDCSKFGC 379

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220780|ref|NP_176434.1| leucine-rich repeat/extensin 2 [Arabidopsis thaliana] gi|332195847|gb|AEE33968.1| leucine-rich repeat/extensin 2 [Arabidopsis thaliana]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/293 (71%), Positives = 234/293 (79%), Gaps = 22/293 (7%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           G+FCA SP +SP  RVVA IDLNHAD+AGYLP E+G LTDLA+FH+NSNRFCG VP TF+
Sbjct: 128 GIFCAPSP-SSPKTRVVAGIDLNHADMAGYLPRELGLLTDLALFHLNSNRFCGEVPLTFK 186

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
            +KLL+E+DLSNNRFVGKFP + LSLP LK+LDLR+NEFEGS+PSKLFDK+LDAIFLN N
Sbjct: 187 HMKLLFELDLSNNRFVGKFPNVVLSLPSLKFLDLRYNEFEGSIPSKLFDKELDAIFLNHN 246

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF FGIPEN+GNSPVS LV A+NDLGGCIPGSIG MGKTLNEIIL NDNLTGCLPPQIG 
Sbjct: 247 RFMFGIPENMGNSPVSALVLADNDLGGCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGN 306

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           LKN+TVFD+SFN L G LPSSIGNMKSLEQLNVA+NRFTGVIPSS+CQL NL+NFTYS N
Sbjct: 307 LKNVTVFDISFNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSICQLSNLENFTYSSN 366

Query: 242 YFTGEPPSCTAAAGG----GGRMM-----------------AARPADCSKMQC 273
           +FTG+ P C A  G      G M                  A+R  DCSK  C
Sbjct: 367 FFTGDAPRCVALLGDNVVVNGSMNCIDGKEDQRSSKECSSPASRSVDCSKFGC 419

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297840287|ref|XP_002888025.1| hypothetical protein ARALYDRAFT_475099 [Arabidopsis lyrata subsp. lyrata] gi|297333866|gb|EFH64284.1| hypothetical protein ARALYDRAFT_475099 [Arabidopsis lyrata subsp. lyrata]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/293 (70%), Positives = 236/293 (80%), Gaps = 22/293 (7%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           G+FC+ SP +SP  RVVA IDLNHAD+AGYLP E+G LTDLA+FH+NSNRFCG VP TF+
Sbjct: 61  GIFCSPSP-SSPKTRVVAGIDLNHADMAGYLPRELGLLTDLALFHLNSNRFCGEVPITFK 119

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
            +KLL+E+DLSNNRFVGKFP + LSLP LK+LDLR+NEFEG +PSKLFDK+LDAIFLN N
Sbjct: 120 NMKLLFELDLSNNRFVGKFPNVVLSLPSLKFLDLRYNEFEGGIPSKLFDKELDAIFLNHN 179

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF+FGIPEN+GNSPVS LV A+NDLGGCIPGSIG MGKTLNEIIL NDNLTGCLPPQIG 
Sbjct: 180 RFRFGIPENMGNSPVSALVLADNDLGGCIPGSIGLMGKTLNEIILSNDNLTGCLPPQIGN 239

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           LKN+TVFDVSFN L G LPSSIGNMKSLEQLNVA+NRFTGVIPSS+CQL NL+NFTYS N
Sbjct: 240 LKNVTVFDVSFNRLSGPLPSSIGNMKSLEQLNVANNRFTGVIPSSICQLSNLENFTYSSN 299

Query: 242 YFTGEPPSCTAAAG-------------GGGRMM--------AARPADCSKMQC 273
           +FTG+ P C A +G             G  R          A+RP DC+K  C
Sbjct: 300 FFTGDAPRCAALSGDNVAVDGSMNCIAGKERQRSSKECSSPASRPVDCTKFGC 352

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|127058169|dbj|BAF48665.1| leucine-rich repeat/extensin 1 [Nicotiana tabacum]

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/294 (69%), Positives = 233/294 (79%), Gaps = 25/294 (8%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           GVFCA+S  N  S+RVVA IDLNHADIAGYL PE+G LTDL +FH+NSNRFCG+VP TF 
Sbjct: 85  GVFCAQSLTND-SIRVVAGIDLNHADIAGYLVPELGLLTDLVLFHLNSNRFCGIVPKTFS 143

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
            LKLL E+DLSNNRFVG FPK+ LSLP LK+LDLRFN+FEG VPSKLFDKDLDA+FLNDN
Sbjct: 144 HLKLLRELDLSNNRFVGGFPKVVLSLPSLKFLDLRFNDFEGPVPSKLFDKDLDALFLNDN 203

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF+FGIPENLGNSPVSVLVFANN+LGGCIP SIGKMG +LNE+ILMNDNLT CLP +IGM
Sbjct: 204 RFRFGIPENLGNSPVSVLVFANNNLGGCIPASIGKMGNSLNELILMNDNLTSCLPMEIGM 263

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           LK LTVFDVSFN +QG LPS++  M+S+EQLNVAHN+ TGVIP+S+CQLP LQNFT+SFN
Sbjct: 264 LKKLTVFDVSFNKIQGPLPSTVSRMRSVEQLNVAHNKLTGVIPASICQLPRLQNFTFSFN 323

Query: 242 YFTGEPPSCTAAAGGGGRMM----------------------AARPADCSKMQC 273
           YF GE P C  AA   GR++                       A+P DC K QC
Sbjct: 324 YFKGEAPVC--AATRSGRVIDGEENCIAGKEDQRSAKECSSDDAKPYDCRKSQC 375

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221178|ref|NP_172668.1| leucine-rich repeat extensin-like protein 1 [Arabidopsis thaliana] gi|75318540|sp|O65375.1|LRX1_ARATH RecName: Full=Leucine-rich repeat extensin-like protein 1; Short=AtLRX1; Short=LRR/EXTENSIN1; AltName: Full=Cell wall hydroxyproline-rich glycoprotein; Flags: Precursor gi|3157926|gb|AAC17609.1| Strong similarity to extensin-like protein gb|Z34465 from Zea mays [Arabidopsis thaliana] gi|13809918|gb|AAK07681.1| leucine-rich repeat/extensin 1 [Arabidopsis thaliana] gi|332190708|gb|AEE28829.1| leucine-rich repeat extensin-like protein 1 [Arabidopsis thaliana]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/293 (67%), Positives = 232/293 (79%), Gaps = 22/293 (7%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
           G++CA SP + P  RVVA IDLNHAD+AGYL  E+G L+DLA+FHINSNRFCG VP TF 
Sbjct: 86  GIYCAPSP-SYPKTRVVAGIDLNHADMAGYLASELGLLSDLALFHINSNRFCGEVPLTFN 144

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
           R+KLLYE+DLSNNRFVGKFPK+ LSLP LK+LDLR+NEFEG +PSKLFD++LDAIFLN N
Sbjct: 145 RMKLLYELDLSNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHN 204

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
           RF+FGIP+N+GNSPVS LV A+N+LGGCIPGSIG+MGKTLNE+IL NDNLTGCLPPQIG 
Sbjct: 205 RFRFGIPKNMGNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGN 264

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           LK +TVFD++ N LQG LPSS+GNMKSLE+L+VA+N FTGVIP S+CQL NL+NFTYS N
Sbjct: 265 LKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSN 324

Query: 242 YFTGEPPSCTAAAGG----GGRM-----------------MAARPADCSKMQC 273
           YF+G PP C A+        G M                 + ARP DCSK  C
Sbjct: 325 YFSGRPPICAASLLADIVVNGTMNCITGLARQRSDKQCSSLLARPVDCSKFGC 377

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	595
TAIR|locus:2008895	744	LRX1 "AT1G12040" [Arabidopsis	0.416	0.333	0.698	1.5e-100
TAIR|locus:2124142	857	AT4G18670 "AT4G18670" [Arabido	0.415	0.288	0.634	3.8e-93
TAIR|locus:2142105	760	LRX3 "AT4G13340" [Arabidopsis	0.415	0.325	0.622	2.9e-90
TAIR|locus:2094854	494	AT3G24480 [Arabidopsis thalian	0.415	0.5	0.618	8.1e-87
TAIR|locus:2094389	470	AT3G22800 "AT3G22800" [Arabido	0.416	0.527	0.616	4.5e-84
TAIR|locus:2085889	956	AT3G19020 [Arabidopsis thalian	0.415	0.258	0.546	6.6e-79
TAIR|locus:2010247	847	AT1G49490 [Arabidopsis thalian	0.415	0.291	0.554	9.5e-78
TAIR|locus:2118949	699	AT4G33970 [Arabidopsis thalian	0.415	0.353	0.538	2.9e-74
TAIR|locus:2179449	433	AT5G25550 "AT5G25550" [Arabido	0.416	0.572	0.550	9.6e-73
TAIR|locus:2044576	727	AT2G15880 [Arabidopsis thalian	0.415	0.339	0.514	2.6e-71

TAIR|locus:2008895 LRX1 "AT1G12040" [Arabidopsis thaliana (taxid:3702)]

 Score = 933 (333.5 bits), Expect = 1.5e-100, Sum P(3) = 1.5e-100
 Identities = 174/249 (69%), Positives = 204/249 (81%)

Query:     2 GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
             G++CA SP + P  RVVA IDLNHAD+AGYL  E+G L+DLA+FHINSNRFCG VP TF 
Sbjct:    86 GIYCAPSP-SYPKTRVVAGIDLNHADMAGYLASELGLLSDLALFHINSNRFCGEVPLTFN 144

Query:    62 RLKLLYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFDKDLDAIFLNDN 121
             R+KLLYE+DLSNNRFVG                 R+NEFEG +PSKLFD++LDAIFLN N
Sbjct:   145 RMKLLYELDLSNNRFVGKFPKVVLSLPSLKFLDLRYNEFEGKIPSKLFDRELDAIFLNHN 204

Query:   122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
             RF+FGIP+N+GNSPVS LV A+N+LGGCIPGSIG+MGKTLNE+IL NDNLTGCLPPQIG 
Sbjct:   205 RFRFGIPKNMGNSPVSALVLADNNLGGCIPGSIGQMGKTLNELILSNDNLTGCLPPQIGN 264

Query:   182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
             LK +TVFD++ N LQG LPSS+GNMKSLE+L+VA+N FTGVIP S+CQL NL+NFTYS N
Sbjct:   265 LKKVTVFDITSNRLQGPLPSSVGNMKSLEELHVANNAFTGVIPPSICQLSNLENFTYSSN 324

Query:   242 YFTGEPPSC 250
             YF+G PP C
Sbjct:   325 YFSGRPPIC 333

GO:0009927 "histidine phosphotransfer kinase activity" evidence=NAS

GO:0000904 "cell morphogenesis involved in differentiation" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0010054 "trichoblast differentiation" evidence=RCA;IMP

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2124142 AT4G18670 "AT4G18670" [Arabidopsis thaliana (taxid:3702)]

 Score = 831 (297.6 bits), Expect = 3.8e-93, Sum P(4) = 3.8e-93
 Identities = 158/249 (63%), Positives = 188/249 (75%)

Query:     2 GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
             GV+CA +  ++  +R VA IDLNHADIAGYLP E+G LTDLA+FHINSNRFCG VP  F 
Sbjct:   113 GVYCAPA-LDNRRIRTVAGIDLNHADIAGYLPQELGLLTDLALFHINSNRFCGTVPHRFN 171

Query:    62 RLKLLYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFDKDLDAIFLNDN 121
             RLKLL+E+DLSNNRF G                 RFNEFEG VP +LF KDLDAIF+N N
Sbjct:   172 RLKLLFELDLSNNRFAGIFPTVVLQLPSLKFLDLRFNEFEGPVPRELFSKDLDAIFINHN 231

Query:   122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
             RF+F +P+NLG+SPVSV+V ANN   GCIP S+G M + L EII M +    CLP QIG 
Sbjct:   232 RFRFELPDNLGDSPVSVIVVANNHFHGCIPTSLGDM-RNLEEIIFMENGFNSCLPSQIGR 290

Query:   182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
             LKN+TVFD SFN L GSLP+SIG M S+EQLNVAHNRF+G IP+++CQLP L+NFT+S+N
Sbjct:   291 LKNVTVFDFSFNELVGSLPASIGGMVSMEQLNVAHNRFSGKIPATICQLPRLENFTFSYN 350

Query:   242 YFTGEPPSC 250
             +FTGEPP C
Sbjct:   351 FFTGEPPVC 359

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2142105 LRX3 "AT4G13340" [Arabidopsis thaliana (taxid:3702)]

 Score = 821 (294.1 bits), Expect = 2.9e-90, Sum P(3) = 2.9e-90
 Identities = 155/249 (62%), Positives = 186/249 (74%)

Query:     2 GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
             GVFC+ +  ++  +R VA IDLNHADIAGYLP E+G L+DLA+FH+NSNRFCG VP  F 
Sbjct:   101 GVFCSPA-LDNRKIRTVAGIDLNHADIAGYLPEELGLLSDLALFHVNSNRFCGTVPHRFN 159

Query:    62 RLKLLYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFDKDLDAIFLNDN 121
             RLKLL+E+DLSNNRF G                 RFNEFEG+VP +LF KDLDAIF+N N
Sbjct:   160 RLKLLFELDLSNNRFAGKFPTVVLQLPSLKFLDLRFNEFEGTVPKELFSKDLDAIFINHN 219

Query:   122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
             RF+F +PEN G+SPVSV+V ANN   GC+P S+ +M K LNEII MN+ L  CLP  IG 
Sbjct:   220 RFRFELPENFGDSPVSVIVLANNRFHGCVPSSLVEM-KNLNEIIFMNNGLNSCLPSDIGR 278

Query:   182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
             LKN+TVFDVSFN L G LP S+G M S+EQLNVAHN  +G IP+S+CQLP L+NFTYS+N
Sbjct:   279 LKNVTVFDVSFNELVGPLPESVGEMVSVEQLNVAHNMLSGKIPASICQLPKLENFTYSYN 338

Query:   242 YFTGEPPSC 250
             +FTGE P C
Sbjct:   339 FFTGEAPVC 347

GO:0005515 "protein binding" evidence=IPI

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2094854 AT3G24480 [Arabidopsis thaliana (taxid:3702)]

 Score = 817 (292.7 bits), Expect = 8.1e-87, Sum P(2) = 8.1e-87
 Identities = 154/249 (61%), Positives = 187/249 (75%)

Query:     2 GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
             GVFC+++  ++  +R VA IDLNHADIAGYLP E+G LTDLA+FH+NSNRFCG VP  F+
Sbjct:   109 GVFCSKA-LDNRKIRTVAGIDLNHADIAGYLPEELGLLTDLALFHVNSNRFCGTVPHKFK 167

Query:    62 RLKLLYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFDKDLDAIFLNDN 121
             +LKLL+E+DLSNNRF G                 RFNEFEG+VP +LF K+LDAIF+N N
Sbjct:   168 QLKLLFELDLSNNRFAGKFPTVVLHLPSLKFLDLRFNEFEGTVPKELFSKNLDAIFINHN 227

Query:   122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
             RF+F +PEN G+SPVSV+V ANN   GCIP S+ +M K LNEII MN+ L  CLP  IG 
Sbjct:   228 RFRFELPENFGDSPVSVIVLANNHFHGCIPTSLVEM-KNLNEIIFMNNGLNSCLPADIGR 286

Query:   182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
             LKN+TVFDVSFN L G LP S+G M  +EQLNVAHN  +G IP+S+CQLP L+NFTYS+N
Sbjct:   287 LKNVTVFDVSFNELVGPLPESVGGMVEVEQLNVAHNLLSGKIPASICQLPKLENFTYSYN 346

Query:   242 YFTGEPPSC 250
             +FTGE P C
Sbjct:   347 FFTGEAPVC 355

GO:0005576 "extracellular region" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2094389 AT3G22800 "AT3G22800" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
 Identities = 154/250 (61%), Positives = 194/250 (77%)

Query:     2 GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
             GVFCA +  ++P +  VA IDLNHA+IAGYLP E+G LTDLA+FHINSNRF G +P T +
Sbjct:    86 GVFCAPA-LDNPYVLTVAGIDLNHANIAGYLPLELGLLTDLALFHINSNRFQGQLPKTLK 144

Query:    62 RLKLLYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFDKDLDAIFLNDN 121
              L LL+E+D+SNN+  G                 RFNEF+G VPS+LFD +LDA+F+NDN
Sbjct:   145 CLHLLHELDVSNNKLSGEFPSVIFSLPSLKFLDIRFNEFQGDVPSQLFDLNLDALFINDN 204

Query:   122 RFQFGIPENLGNSPVSVLVFANNDL-GGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIG 180
             +FQF +P N+GNSPVSVLV ANNDL G C+P S  KMGKTL+EII+ N  LTGCL  +IG
Sbjct:   205 KFQFRLPRNIGNSPVSVLVLANNDLQGSCVPPSFYKMGKTLHEIIITNSQLTGCLNREIG 264

Query:   181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF 240
             +L  LTVFDVS+N+L GSLP +IG+MKSLEQLN+AHN+F+G IP S+C+LP L+NFTYS+
Sbjct:   265 LLNQLTVFDVSYNNLVGSLPETIGDMKSLEQLNIAHNKFSGYIPESICRLPRLENFTYSY 324

Query:   241 NYFTGEPPSC 250
             N+F+GEPP+C
Sbjct:   325 NFFSGEPPAC 334

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2085889 AT3G19020 [Arabidopsis thaliana (taxid:3702)]

 Score = 750 (269.1 bits), Expect = 6.6e-79, Sum P(2) = 6.6e-79
 Identities = 136/249 (54%), Positives = 183/249 (73%)

Query:     2 GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
             GVFCA +  + PS+ VVA IDLNHADIAGYLPPE+G LTD+A+FH+NSNRFCGV+P +  
Sbjct:   107 GVFCAPA-LDDPSVLVVAGIDLNHADIAGYLPPELGLLTDVALFHVNSNRFCGVIPKSLS 165

Query:    62 RLKLLYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFDKDLDAIFLNDN 121
             +L L+YE D+SNNRFVG                 R+N+FEG +P ++FDKDLDAIFLN+N
Sbjct:   166 KLTLMYEFDVSNNRFVGPFPTVALSWPSLKFLDIRYNDFEGKLPPEIFDKDLDAIFLNNN 225

Query:   122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
             RF+  IPE +G S  SV+ FA+N   GCIP +IG+M K LNEI+ + +NL+GCLP +IG 
Sbjct:   226 RFESTIPETIGKSTASVVTFAHNKFSGCIPKTIGQM-KNLNEIVFIGNNLSGCLPNEIGS 284

Query:   182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
             L N+TVFD S N   GSLPS++  + ++EQ++ ++N+FTG +  ++C+LP L NFT+S+N
Sbjct:   285 LNNVTVFDASSNGFVGSLPSTLSGLANVEQMDFSYNKFTGFVTDNICKLPKLSNFTFSYN 344

Query:   242 YFTGEPPSC 250
             +F GE  SC
Sbjct:   345 FFNGEAQSC 353

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2010247 AT1G49490 [Arabidopsis thaliana (taxid:3702)]

 Score = 745 (267.3 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
 Identities = 138/249 (55%), Positives = 179/249 (71%)

Query:     2 GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
             GV+CA +  +  SL VVA +DLNHADIAG+LPPE+G +TDLA+FHINSNRFCG++P +  
Sbjct:    94 GVYCAPA-LDDDSLTVVAGVDLNHADIAGHLPPELGLMTDLALFHINSNRFCGIIPKSLS 152

Query:    62 RLKLLYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFDKDLDAIFLNDN 121
             +L L+YE D+SNNRFVG                 R+NEFEGS+PS++FDKDLDAIFLN+N
Sbjct:   153 KLALMYEFDVSNNRFVGQFPEVSLSWPSLKFLDLRYNEFEGSLPSEIFDKDLDAIFLNNN 212

Query:   122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
             RF+  IP  +G S  SV+ FANN   GCIP SIG M K LNEI+   +NLTGC P +IG+
Sbjct:   213 RFESVIPGTIGKSKASVVTFANNKFSGCIPKSIGNM-KNLNEIVFTGNNLTGCFPNEIGL 271

Query:   182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
             L N+TVFD S N   GSLPS++  + S+EQL+++HN+ TG +    C+LPNL +F +S+N
Sbjct:   272 LNNVTVFDASKNGFVGSLPSTLSGLASVEQLDLSHNKLTGFVVDKFCKLPNLDSFKFSYN 331

Query:   242 YFTGEPPSC 250
             +F GE  SC
Sbjct:   332 FFNGEAESC 340

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2118949 AT4G33970 [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
 Identities = 134/249 (53%), Positives = 178/249 (71%)

Query:     2 GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
             GV CA +  +   + VVA +DLN ADIAG+LP E+G +TD+A+FH+NSNRFCG++P +F 
Sbjct:   121 GVVCAPA-LDDSDVTVVAGVDLNGADIAGHLPAELGLMTDVAMFHLNSNRFCGIIPKSFE 179

Query:    62 RLKLLYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFDKDLDAIFLNDN 121
             +LKL++E D+SNNRFVG                 RFN+FEG VP +LF K+LDAIFLNDN
Sbjct:   180 KLKLMHEFDVSNNRFVGPFPNVVLSWPDVKYFDLRFNDFEGQVPPELFKKELDAIFLNDN 239

Query:   122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
             RF   IPE+LG SP SV+ FANN   GCIP SIG M K LNEI+ M+++L GC P +IG 
Sbjct:   240 RFTSVIPESLGESPASVVTFANNKFTGCIPKSIGNM-KNLNEIVFMDNDLGGCFPSEIGK 298

Query:   182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
             L N+TVFD S N   G LP+S   + S+E+++++ N+ TG++P ++CQLPNL N TYS+N
Sbjct:   299 LSNVTVFDASKNSFIGRLPTSFVGLTSVEEIDISGNKLTGLVPHNICQLPNLVNLTYSYN 358

Query:   242 YFTGEPPSC 250
             YF+G+  SC
Sbjct:   359 YFSGQGGSC 367

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2179449 AT5G25550 "AT5G25550" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 137/249 (55%), Positives = 176/249 (70%)

Query:     2 GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
             GV C+ S  + P ++ V+ +DLN  DIAG+LP E+G LTD+A+FH+NSNRFCG +P  F 
Sbjct:    86 GVVCSES-LDDPLVKTVSGVDLNQGDIAGHLPEELGLLTDIALFHVNSNRFCGTLPVGFS 144

Query:    62 RLKLLYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFDKDLDAIFLNDN 121
             +L LL+E+DLSNNRF G                 R+NEFEG +P  LFDKDLDA+FLN N
Sbjct:   145 QLSLLFELDLSNNRFAGKFPEVVIGLPKLKYLDLRYNEFEGELPESLFDKDLDALFLNSN 204

Query:   122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
             RF+  IP N+GNSPVSVLV A+N   GCIP S GKMGKTLNEIILM++ L  C+P  +G+
Sbjct:   205 RFRSKIPVNMGNSPVSVLVLASNRFEGCIPPSFGKMGKTLNEIILMDNGLQSCIPNDMGL 264

Query:   182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
             L+N+TV D+S+N L G LP S+G M++LE LNV  N  +G+IP  +C L  L++F Y  N
Sbjct:   265 LQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLSGLIPDELCSLEKLRDFRYGSN 324

Query:   242 YFTGEPPSC 250
             YFTGEP +C
Sbjct:   325 YFTGEPATC 333

GO:0008150 "biological_process" evidence=ND

GO:0005199 "structural constituent of cell wall" evidence=ISS

TAIR|locus:2044576 AT2G15880 [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
 Identities = 128/249 (51%), Positives = 171/249 (68%)

Query:     2 GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
             GVFCA +  + P + VVA +DLN ADIAG+LP E+G +TD+A+FH+NSNRFCG++P +F 
Sbjct:    95 GVFCAPA-LDDPDVAVVAGVDLNGADIAGHLPAELGLMTDVAMFHLNSNRFCGIIPKSFE 153

Query:    62 RLKLLYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVPSKLFDKDLDAIFLNDN 121
             +L L++E D+SNNRFVG                 R+N+FEG VP +LF KDLDAIFLN+N
Sbjct:   154 KLSLMHEFDVSNNRFVGPFPSVVLSWPAVKFIDVRYNDFEGQVPPELFKKDLDAIFLNNN 213

Query:   122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
             RF   IP++LG S  SV+ FA+N   GCIP SIG M K LNEII  +++L GC P +IG 
Sbjct:   214 RFTSTIPDSLGESSASVVTFAHNKFSGCIPRSIGNM-KNLNEIIFKDNSLGGCFPSEIGK 272

Query:   182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
             L N+ VFD S N   G LP S   + S+E+ +++ N+ TG IP ++C+LP L N TY++N
Sbjct:   273 LANVNVFDASMNSFTGVLPPSFVGLTSMEEFDISGNKLTGFIPENICKLPKLVNLTYAYN 332

Query:   242 YFTGEPPSC 250
             YF G+  SC
Sbjct:   333 YFNGQGDSC 341

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O48809	LRX2_ARATH	No assigned EC number	0.7133	0.4554	0.3447	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	595
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-31
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-28
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-24
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-23
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-18
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-17
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-15
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-14
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-13
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-13
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-13
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-12
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	8e-12
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-11
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	3e-11
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	5e-11
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	6e-11
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-11
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-11
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-10
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-10
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	8e-10
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	9e-10
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	3e-09
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	3e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-09
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	6e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	9e-09
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	1e-08
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-08
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-08
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-08
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-08
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-07
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-07
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	2e-07
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-07
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-07
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	6e-07
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	7e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	9e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	1e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-06
PRK08691	709	PRK08691, PRK08691, DNA polymerase III subunits ga	1e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-06
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-06
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	2e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	3e-06
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	3e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-06
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-05
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	1e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-05
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	5e-05
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	5e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	5e-05
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	7e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	8e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	8e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	8e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	8e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	9e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	1e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-04
PLN02217	670	PLN02217, PLN02217, probable pectinesterase/pectin	1e-04
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	2e-04
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	2e-04
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-04
pfam08580	626	pfam08580, KAR9, Yeast cortical protein KAR9	2e-04
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	2e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-04
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	3e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	3e-04
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	3e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	4e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	4e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-04
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	5e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	6e-04
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	6e-04
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	6e-04
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	6e-04
PHA03321	694	PHA03321, PHA03321, tegument protein VP11/12; Prov	6e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	7e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-04
pfam01044	850	pfam01044, Vinculin, Vinculin family	7e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	8e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-04
PTZ00436	357	PTZ00436, PTZ00436, 60S ribosomal protein L19-like	8e-04
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	8e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	9e-04
PHA03377	1000	PHA03377, PHA03377, EBNA-3C; Provisional	9e-04
PHA03132	580	PHA03132, PHA03132, thymidine kinase; Provisional	9e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	0.001
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.001
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	0.001
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.001
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.001
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.001
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.001
pfam04484	313	pfam04484, DUF566, Family of unknown function (DUF	0.001
PHA03321	694	PHA03321, PHA03321, tegument protein VP11/12; Prov	0.001
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.001
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.001
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.002
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.002
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.002
TIGR00859	595	TIGR00859, ENaC, sodium channel transporter	0.002
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.002
pfam11711	377	pfam11711, Tim54, Inner membrane protein import co	0.002
pfam03999	619	pfam03999, MAP65_ASE1, Microtubule associated prot	0.002
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	0.002
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	0.002
PLN02258	590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.002
PHA03269	566	PHA03269, PHA03269, envelope glycoprotein C; Provi	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.003
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.003
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.003
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.003
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.003
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	0.003
TIGR00859	595	TIGR00859, ENaC, sodium channel transporter	0.003
PHA03369	663	PHA03369, PHA03369, capsid maturational protease;	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	0.004
PRK10856	331	PRK10856, PRK10856, cytoskeletal protein RodZ; Pro	0.004
pfam05539	408	pfam05539, Pneumo_att_G, Pneumovirinae attachment	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  128 bits (322), Expect = 7e-31
 Identities = 81/234 (34%), Positives = 127/234 (54%), Gaps = 6/234 (2%)

Query: 18  VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRLKLLYEVDLSNNRF 76
           V SIDL+  +I+G +   I RL  +   ++++N+  G +P   F     L  ++LSNN F
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 77  VGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKL-FDKDLDAIFLNDNRFQFGIPENLGN-S 134
            G  P+  +    L+ LDL  N   G +P+ +     L  + L  N     IP +L N +
Sbjct: 131 TGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188

Query: 135 PVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNH 194
            +  L  A+N L G IP  +G+M K+L  I L  +NL+G +P +IG L +L   D+ +N+
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247

Query: 195 LQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248
           L G +PSS+GN+K+L+ L +  N+ +G IP S+  L  L +   S N  +GE P
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  119 bits (300), Expect = 5e-28
 Identities = 79/261 (30%), Positives = 126/261 (48%), Gaps = 30/261 (11%)

Query: 15  LRVVASIDLNHADIAGYLPPEIGRLT-DLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSN 73
           L  + +I+L++  ++G +P +I   +  L   ++++N F G +P     +  L  +DLSN
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSN 149

Query: 74  NRF------------------------VGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLF 109
           N                          VGK P    +L  L++L L  N+  G +P +L 
Sbjct: 150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209

Query: 110 D-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILM 167
             K L  I+L  N     IP  +G  + ++ L    N+L G IP S+G + K L  + L 
Sbjct: 210 QMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL-KNLQYLFLY 268

Query: 168 NDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSV 227
            + L+G +PP I  L+ L   D+S N L G +P  +  +++LE L++  N FTG IP ++
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328

Query: 228 CQLPNLQNFTYSFNYFTGEPP 248
             LP LQ      N F+GE P
Sbjct: 329 TSLPRLQVLQLWSNKFSGEIP 349

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  112 bits (281), Expect = 1e-25
 Identities = 64/198 (32%), Positives = 106/198 (53%), Gaps = 2/198 (1%)

Query: 30  GYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPK 89
           G +P  +G    L    +  N F G +PS F +L L+Y +D+SNN   G+       +P 
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453

Query: 90  LKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGG 148
           L+ L L  N+F G +P     K L+ + L+ N+F   +P  LG+ S +  L  + N L G
Sbjct: 454 LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513

Query: 149 CIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKS 208
            IP  +    K ++ + L ++ L+G +P     +  L+  D+S N L G +P ++GN++S
Sbjct: 514 EIPDELSSCKKLVS-LDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVES 572

Query: 209 LEQLNVAHNRFTGVIPSS 226
           L Q+N++HN   G +PS+
Sbjct: 573 LVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (274), Expect = 7e-25
 Identities = 69/236 (29%), Positives = 120/236 (50%), Gaps = 8/236 (3%)

Query: 21  IDLNHADIAGYLPPEI---GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFV 77
           +DL+  ++ G +P  +   G L  L +F   SN   G +P +    + L  V L +N F 
Sbjct: 361 LDLSTNNLTGEIPEGLCSSGNLFKLILF---SNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 78  GKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPV 136
           G+ P  F  LP + +LD+  N  +G + S+ +D   L  + L  N+F  G+P++ G+  +
Sbjct: 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRL 477

Query: 137 SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQ 196
             L  + N   G +P  +G + + L ++ L  + L+G +P ++   K L   D+S N L 
Sbjct: 478 ENLDLSRNQFSGAVPRKLGSLSE-LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536

Query: 197 GSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTA 252
           G +P+S   M  L QL+++ N+ +G IP ++  + +L     S N+  G  PS  A
Sbjct: 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGA 592

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  108 bits (271), Expect = 2e-24
 Identities = 79/260 (30%), Positives = 122/260 (46%), Gaps = 33/260 (12%)

Query: 21  IDLNHADI-----AGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNN- 74
             LNH D+      G +P  +G L +L    +  N+  G +P +   L+ L  +DLS+N 
Sbjct: 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNS 295

Query: 75  -----------------------RFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK 111
                                   F GK P    SLP+L+ L L  N+F G +P  L   
Sbjct: 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355

Query: 112 -DLDAIFLNDNRFQFGIPENLGNS-PVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMND 169
            +L  + L+ N     IPE L +S  +  L+  +N L G IP S+G   ++L  + L ++
Sbjct: 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-ACRSLRRVRLQDN 414

Query: 170 NLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ 229
           + +G LP +   L  +   D+S N+LQG + S   +M SL+ L++A N+F G +P S   
Sbjct: 415 SFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-G 473

Query: 230 LPNLQNFTYSFNYFTGEPPS 249
              L+N   S N F+G  P 
Sbjct: 474 SKRLENLDLSRNQFSGAVPR 493

Length = 968

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score =  104 bits (261), Expect = 4e-23
 Identities = 83/347 (23%), Positives = 100/347 (28%), Gaps = 43/347 (12%)

Query: 286  GSPAPATSPRS---------SPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPP 336
             +P  +  PR+          P   S  PP    P    P P+P             PPP
Sbjct: 2590 DAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPP 2649

Query: 337  P----------------------PTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPP- 373
                                       SSP  R       P      S   PP PPP P 
Sbjct: 2650 ERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPE 2709

Query: 374  -PTHKESPRTHLPPTPPPVYNVSPSPKHFP--PPPSHYHNTPPPPTKKASPSTHYAP--P 428
               H     T LPP P      SP+    P  P       TP  P + A P T   P  P
Sbjct: 2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAP 2769

Query: 429  PPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPA-----PSYFAYSPPPP 483
             PP             P V       +   +P  P    A V A     P   + + P P
Sbjct: 2770 APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLP 2829

Query: 484  PARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQ 543
            P     P AP  P  P     P  G+  P  +     PP       P +    P     +
Sbjct: 2830 PPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRR-RPPSRSPAAKPAAPARPPVRRLAR 2888

Query: 544  TPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPP 590
               S +  S+A+PP     PP P   P       P        PPPP
Sbjct: 2889 PAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPP 2935

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 99.2 bits (247), Expect = 2e-21
 Identities = 88/317 (27%), Positives = 106/317 (33%), Gaps = 29/317 (9%)

Query: 286  GSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFI-----RPSPPPPPTS 340
            G P P   P + P +     PP R        PAPRP     P +     RP  PP    
Sbjct: 2549 GDPPPPLPPAAPPAAPDRSVPPPR--------PAPRP---SEPAVTSRARRPDAPPQSAR 2597

Query: 341  KSSP--STRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSP 398
              +P         P PP+  PP +    P PP P P   E      P  PPP        
Sbjct: 2598 PRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA 2657

Query: 399  KHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHM 458
                  P             + P         P    +   + PPPPP    P P+    
Sbjct: 2658 PGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVS 2717

Query: 459  APPPPPGESAEVPA--PSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEY 516
            A P PPG +A   A      A +PP  PA    P  PA P  P    P   G P PAP  
Sbjct: 2718 ATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP----PTTAGPPAPAPPA 2773

Query: 517  YHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPL 576
              A+ PP      P     +       +P  P     AV  P +  PP   P+     PL
Sbjct: 2774 APAAGPPRRLT-RPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG----PL 2828

Query: 577  PPIIGVSYASPPPPVIP 593
            PP       +PPPP  P
Sbjct: 2829 PPPTSAQPTAPPPPPGP 2845

Length = 3151

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 94.1 bits (234), Expect = 5e-20
 Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 28/243 (11%)

Query: 14  SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSN 73
           SL+V   +DL    + G +P  +  LT L    + SN+  G +P    ++K L  + L  
Sbjct: 165 SLKV---LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221

Query: 74  NRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG 132
           N   G+ P     L  L +LDL +N   G +PS L + K+L  +FL  N+          
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK---------- 271

Query: 133 NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSF 192
                        L G IP SI  + K L  + L +++L+G +P  +  L+NL +  +  
Sbjct: 272 -------------LSGPIPPSIFSLQK-LISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317

Query: 193 NHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTA 252
           N+  G +P ++ ++  L+ L +  N+F+G IP ++ +  NL     S N  TGE P    
Sbjct: 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377

Query: 253 AAG 255
           ++G
Sbjct: 378 SSG 380

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 93.0 bits (231), Expect = 1e-19
 Identities = 66/225 (29%), Positives = 101/225 (44%), Gaps = 4/225 (1%)

Query: 27  DIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLS 86
           +  G +P  +  L  L +  + SN+F G +P    +   L  +DLS N   G+ P+   S
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 87  LPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSP-VSVLVFANN 144
              L  L L  N  EG +P  L   + L  + L DN F   +P      P V  L  +NN
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 145 DLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIG 204
           +L G I      M  +L  + L  +   G LP   G  K L   D+S N   G++P  +G
Sbjct: 439 NLQGRINSRKWDM-PSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLG 496

Query: 205 NMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           ++  L QL ++ N+ +G IP  +     L +   S N  +G+ P+
Sbjct: 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.4 bits (219), Expect = 4e-18
 Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 12/207 (5%)

Query: 49  SNRFC---GVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVP 105
           S   C   G+  +   R+  +   DLS     GK       LP ++ ++L  N+  G +P
Sbjct: 54  SADVCLWQGITCNNSSRVVSI---DLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP 110

Query: 106 SKLFDKDLDAIFLN--DNRFQFGIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLN 162
             +F       +LN  +N F   IP   G+ P +  L  +NN L G IP  IG    +L 
Sbjct: 111 DDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSF-SSLK 167

Query: 163 EIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV 222
            + L  + L G +P  +  L +L    ++ N L G +P  +G MKSL+ + + +N  +G 
Sbjct: 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227

Query: 223 IPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           IP  +  L +L +    +N  TG  PS
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Length = 968

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 85.4 bits (211), Expect = 4e-17
 Identities = 86/328 (26%), Positives = 105/328 (32%), Gaps = 38/328 (11%)

Query: 286  GSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPS 345
            GS      P   PP+    P        + P PA     SP     P+PP  P   ++P 
Sbjct: 2693 GSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPG 2752

Query: 346  TRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPP- 404
              + P  PP    PP    +PP+ P   P      R     T P V ++S S +  P P 
Sbjct: 2753 GPARPARPPTTAGPPAP--APPAAPAAGP----PRRL----TRPAVASLSESRESLPSPW 2802

Query: 405  -PSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPP-----------------P 446
             P+        P     P+   A P PP     P  +PPPPP                  
Sbjct: 2803 DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT-APPPPPGPPPPSLPLGGSVAPGGD 2861

Query: 447  VEYYPPPYQ---QHMAPPPPPGESAEVPAPSYFAYS---PPPPPARDENPVAPATPGAPV 500
            V   PP      +  AP  PP      PA S    S   PP  P R   P AP  P    
Sbjct: 2862 VRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQP 2921

Query: 501  EYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHN--PPSWHHQTPPSPNYHSYAVPPP 558
            +  PP +  PPP P      P     D           P  W     P          P 
Sbjct: 2922 QPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQ 2981

Query: 559  PSPSPPTPPPSPYDNTPLPPIIGVSYAS 586
            P+PS   P  S    T        S+AS
Sbjct: 2982 PAPSREAPASSTPPLTGHSLSRVSSWAS 3009

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 79.6 bits (196), Expect = 2e-15
 Identities = 79/324 (24%), Positives = 100/324 (30%), Gaps = 28/324 (8%)

Query: 285  GGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSP 344
             G P   T P  +  S S    P    P   P     PA +  P   P+ P PP + + P
Sbjct: 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQP 2836

Query: 345  STRSHPTPPPPANSPPKSFHSPPS-----PPPPPPTHKESPRTHLPPTPPPVYNVSPSPK 399
            +    P  PPP + P     +P       PP   P  K +     P        VS S +
Sbjct: 2837 TAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTE 2896

Query: 400  HFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMA 459
             F  PP    + P  P +  +P      P PP     P Q  PPPPP     PP      
Sbjct: 2897 SFALPP----DQPERPPQPQAPPPPQPQPQPP----PPPQPQPPPPPPPRPQPPLAPTTD 2948

Query: 460  PPPPPGESAEVPAPSYFAYSPP--PPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYY 517
            P      S  VP P   A  P     P       AP+   AP    PP  G+       +
Sbjct: 2949 PAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSRE-APASSTPPLTGHSLSRVSSW 3007

Query: 518  HAS---------PPPSGCDIIPPS---HHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPT 565
             +S         PP S    + P       +  S         +  +    PP    P  
Sbjct: 3008 ASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFA 3067

Query: 566  PPPSPYDNTPLPPIIGVSYASPPP 589
              P P            S   PPP
Sbjct: 3068 HEPDPATPEAGARESPSSQFGPPP 3091

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 76.5 bits (188), Expect = 3e-14
 Identities = 71/306 (23%), Positives = 88/306 (28%), Gaps = 35/306 (11%)

Query: 306  PPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPK---- 361
            P  R+P   +   A   A  PG    P P  PP   S  +    P  P      P+    
Sbjct: 2478 PVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAP-SRLAPAILPDEPVGEPVHPRMLTW 2536

Query: 362  -----SFHSPPSPPPPPPTHKESPRTHLPPTPPP------VYNVSPSPKHFPPPPSHYHN 410
                    S  +  PPPP         LPP  PP      V    P+P+   P  +    
Sbjct: 2537 IRGLEELASDDAGDPPPP---------LPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRAR 2587

Query: 411  TPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEV 470
             P  P + A P         PR    P   PP     +  PP        P P       
Sbjct: 2588 RPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVP 2647

Query: 471  PAPSYFAYSPPP---PPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCD 527
            P         P     P R       A   +P +    +   P        A PPP    
Sbjct: 2648 PPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPP--- 2704

Query: 528  IIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASP 587
              PP+    P +    TP  P   +     P  P+ P PP  P    P  P      A P
Sbjct: 2705 --PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP--AGPATPGGPARPARP 2760

Query: 588  PPPVIP 593
            P    P
Sbjct: 2761 PTTAGP 2766

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 74.1 bits (182), Expect = 1e-13
 Identities = 54/244 (22%), Positives = 69/244 (28%), Gaps = 39/244 (15%)

Query: 259 RMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVP 318
           RM+A RP              G SG G  PA A +        + P P    P    P P
Sbjct: 359 RMLAFRP--------------GQSGGGAGPATAAAA-----PVAQPAPAAAAPAAAAPAP 399

Query: 319 APRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKE 378
           A  PA         +        ++P+ RS P P   A +   S   P   P P P    
Sbjct: 400 AAPPAAPAAA--PAAAAAARAVAAAPARRS-PAPEALAAARQASARGPGGAPAPAPAPAA 456

Query: 379 SPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPP----PPPRFY 434
           +P        P      P        P+        P    +P+    PP    PP    
Sbjct: 457 AP---AAAARPAAAGPRPVAAAAAAAPA-----RAAPAAAPAPADDDPPPWEELPPEFAS 508

Query: 435 YVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPA 494
             P Q    P        P     A P    E+      +    +P P  A    PV   
Sbjct: 509 PAPAQPDAAPAGWVAESIP-DPATADPDDAFETLAPAPAA----APAPRAAAATEPVVAP 563

Query: 495 TPGA 498
            P  
Sbjct: 564 RPPR 567

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 72.3 bits (178), Expect = 3e-13
 Identities = 48/249 (19%), Positives = 64/249 (25%), Gaps = 31/249 (12%)

Query: 248 PSCTAAAGGGGRMMAARPADCSKMQCGRG----GGSGGSGWGGSPAPATSPRSSPPSSSS 303
                    G       PA  S             +  +          +   +  S++ 
Sbjct: 584 VEAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAP 643

Query: 304 PPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSF 363
            P         K V  P  ++    +   +    P +         P P P   +P    
Sbjct: 644 APGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAA---------PPPAPAPAAPAAPA 694

Query: 364 HSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPST 423
            + P+ P P P           P   P      +     P P+     P PP        
Sbjct: 695 GAAPAQPAPAPAATPPAGQADDPAAQPP---QAAQGASAPSPAADDPVPLPP-------- 743

Query: 424 HYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPP 483
              P  PP     P Q PPPP P     P      A PPP   S E       A S    
Sbjct: 744 --EPDDPPDPAGAPAQPPPPPAPAPAAAPA-----AAPPPSPPSEEEEMAEDDAPSMDDE 796

Query: 484 PARDENPVA 492
             RD   VA
Sbjct: 797 DRRDAEEVA 805

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 71.2 bits (175), Expect = 8e-13
 Identities = 40/225 (17%), Positives = 54/225 (24%), Gaps = 8/225 (3%)

Query: 281 GSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTS 340
           G  W        +P ++       P     P        P    +P     P+P     +
Sbjct: 579 GGDWQVEAVVGPAPGAAGGEGPPAPASSGPPE---EAARPAAPAAPAAPAAPAPAGAAAA 635

Query: 341 KSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKH 400
            +  S    P    P + P        S        K        P P P      +P  
Sbjct: 636 PAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG 695

Query: 401 FPPPPSHYHNTPPPPTKKASPSTHYAPPPP----PRFYYVPKQSPPPPPPVEYYPPPYQQ 456
             P          PP  +A       P                 P PP P +  P P   
Sbjct: 696 AAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEP-DDPPDPAGA 754

Query: 457 HMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVE 501
              PPPPP  +      +    SPP          AP+       
Sbjct: 755 PAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRR 799

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 70.0 bits (171), Expect = 3e-12
 Identities = 65/326 (19%), Positives = 90/326 (27%), Gaps = 16/326 (4%)

Query: 244  TGEPPSCTAAAG-GGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSS 302
            T  PP+    A    G          + +   R            PA   +P ++ P ++
Sbjct: 2763 TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822

Query: 303  SPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKS 362
            SP  P   P   +P   P P   P P +       P         S      PA      
Sbjct: 2823 SPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPP 2882

Query: 363  FHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPS 422
                  P     T +        P  PP     P P+  P PP      PPPP       
Sbjct: 2883 VRRLARPAVSRST-ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ- 2940

Query: 423  THYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPP--PPPGESAEVPAPSYFAYSP 480
                PP  P              P    P P+   + P     P      PAPS  A + 
Sbjct: 2941 ----PPLAPT-----TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPAS 2991

Query: 481  PPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSW 540
              PP    +    ++  + +  +  ++ +PPP        PP    D    S   +    
Sbjct: 2992 STPPLTGHSLSRVSSWASSLALH--EETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSER 3049

Query: 541  HHQTPPSPNYHSYAVPPPPSPSPPTP 566
                   P       P    P P TP
Sbjct: 3050 SDLEALDPLPPEPHDPFAHEPDPATP 3075

Length = 3151

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 67.3 bits (164), Expect = 7e-12
 Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 22/241 (9%)

Query: 3   VFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRR 62
           V   R   N  S      + L  + ++  L  ++   + ++    + N            
Sbjct: 45  VAVNRLALNLSSNT----LLLLPSSLSRLLSLDLLSPSGISSLDGSEN---------LLN 91

Query: 63  LKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSK-LFDKDLDAIFLNDN 121
           L  L  +DL+ NR      +L   L  L  LDL  N      P   L   +L  + L+DN
Sbjct: 92  LLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN 150

Query: 122 RFQFGIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIG 180
           + +  +P  L N P +  L  + NDL   +P  +  +    N    ++ N    LPP+I 
Sbjct: 151 KIES-LPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLD--LSGNKISDLPPEIE 206

Query: 181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF 240
           +L  L   D+S N +   L SS+ N+K+L  L +++N+    +P S+  L NL+    S 
Sbjct: 207 LLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSN 264

Query: 241 N 241
           N
Sbjct: 265 N 265

Length = 394

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 68.0 bits (166), Expect = 8e-12
 Identities = 67/347 (19%), Positives = 87/347 (25%), Gaps = 38/347 (10%)

Query: 259 RMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSP---PSSSSPPPPKRKPPVVK 315
           RM+A  PA          GG    G   +      P        +  +   P        
Sbjct: 354 RMLAFEPA--------VTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGA 405

Query: 316 PVPAPRP-ANSPGPFIRPSPP-----PPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSP 369
              A  P A +     R   P     PP T+           P P   +   S  S    
Sbjct: 406 AGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDE 465

Query: 370 PPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPP 429
               P       +      PP     P+P+   P  +      P     A+ S   AP  
Sbjct: 466 RDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAA-TPAAVPDARAPAAASREDAPAA 524

Query: 430 PPRFYYVPKQSPPPPPPVEYYPPP------------YQQHMAPPPPPGESAEVPAPSYFA 477
                  P     PP P    P                  M      G  A   A    A
Sbjct: 525 AA----PPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAA 580

Query: 478 YSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNP 537
            +  P PA     V   TP A              A +   +   P   + IPP  +   
Sbjct: 581 PAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPPPWEDIPPDDYVPL 640

Query: 538 PSWHHQTPPSPNYHSYAVPPPP----SPSPPTPPPSPYDNTPLPPII 580
            +      P   +       P     +P P   P  P D  PLPP I
Sbjct: 641 SADEGFGGPDDGFVPVFDSGPDDVRVAPKPADAPAPPVDTRPLPPAI 687

Length = 830

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 67.1 bits (164), Expect = 2e-11
 Identities = 49/210 (23%), Positives = 60/210 (28%), Gaps = 24/210 (11%)

Query: 284 WGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSS 343
           WG +P P   P  +P S   P  P +K   ++ V A        P      PP       
Sbjct: 126 WGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQ--LPQPPQQV---- 179

Query: 344 PSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPP 403
                      P   PP+    P   PP  P           P PP  +     P+ F P
Sbjct: 180 ----------LPQGMPPRQAAFPQQGPPEQP--------PGYPQPPQGHPEQVQPQQFLP 221

Query: 404 PPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPP 463
            PS     PP P +          P  P         PP PP  +  PP  Q    P   
Sbjct: 222 APSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQ 281

Query: 464 PGESAEVPAPSYFAYSPPPPPARDENPVAP 493
           P     +P        PP  P        P
Sbjct: 282 PTPHPGLPQGQNAPLPPPQQPQLLPLVQQP 311

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 66.2 bits (162), Expect = 3e-11
 Identities = 38/242 (15%), Positives = 49/242 (20%), Gaps = 40/242 (16%)

Query: 331 RPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPP 390
               PP P S   P   + P  P    +P     +  +  P   +               
Sbjct: 596 GGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASA-------------- 641

Query: 391 VYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYY 450
               +P+P    P     H   P  +         A    P           P  P    
Sbjct: 642 ----APAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG-A 696

Query: 451 PPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNP 510
            P          PP   A+ PA       PP        P   A    P           
Sbjct: 697 APAQPAPAPAATPPAGQADDPAA-----QPPQAAQGASAPSPAADDPVP----------L 741

Query: 511 PPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSP 570
           PP P+              P      P       P +    S             P    
Sbjct: 742 PPEPDDPPDPAGA------PAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795

Query: 571 YD 572
            D
Sbjct: 796 ED 797

Length = 824

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.0 bits (161), Expect = 3e-11
 Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 166 LMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPS 225
           L N  L G +P  I  L++L   ++S N ++G++P S+G++ SLE L++++N F G IP 
Sbjct: 425 LDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484

Query: 226 SVCQLPNLQNFTYSFNYFTGEPPSCTAAAGG 256
           S+ QL +L+    + N  +G  P   AA GG
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVP---AALGG 512

Length = 623

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 66.3 bits (162), Expect = 3e-11
 Identities = 69/334 (20%), Positives = 103/334 (30%), Gaps = 17/334 (5%)

Query: 244 TGEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSS 303
           TG PP     A           +  +            +  G S      P   P S   
Sbjct: 69  TGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPP 128

Query: 304 PPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSP--STRSHPTPPPPANSPPK 361
            P P             RP  SPGP    SPP    S ++      S      P +SP +
Sbjct: 129 SPAPDLSEM-------LRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEE 181

Query: 362 SFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASP 421
           +  +P SPP  PP    +P     P PP   +   S     P P+   +        +S 
Sbjct: 182 TARAPSSPPAEPPP--STPPAAASPRPPRRSSPI-SASASSPAPAPGRSAADDAGASSSD 238

Query: 422 STHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPP 481
           S+         +    +   P P P+      ++      P         + S    SP 
Sbjct: 239 SSSS-ESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPS 297

Query: 482 PPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWH 541
           P P+   +  AP++P A       ++ +         +S    G  + P       PS  
Sbjct: 298 PSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSS---SSESSRGAAVSPGPSPSRSPS-P 353

Query: 542 HQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTP 575
            + PP  +  S    P PS +P +P  S    T 
Sbjct: 354 SRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTR 387

Length = 1352

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 66.2 bits (161), Expect = 3e-11
 Identities = 76/335 (22%), Positives = 110/335 (32%), Gaps = 22/335 (6%)

Query: 264 RPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPA 323
           +P     +Q   G     S    +P+    P    P ++ P P  ++P  +  + AP   
Sbjct: 174 QPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAP--- 230

Query: 324 NSPGPFIRPSPPPPPTSKS-SPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRT 382
            S  P   PSP PP   ++ S  +   P P             PP P             
Sbjct: 231 -SLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHP 289

Query: 383 HLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPP 442
              P  P     S  P    P  +  H+  PP      P       P P    +P   PP
Sbjct: 290 SSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPP 349

Query: 443 PPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEY 502
           P  P+   P    +H     PP      P P   +  PPPP  +  + +    P  P  +
Sbjct: 350 PTTPIPQLPNQSHKH-----PPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHP--PSAH 402

Query: 503 YPPKKGNPPPAPEYYHASPPP--SGCDIIPPSHHHNPPSWHHQTPPSPNYHSY------- 553
            PP +  P   P     + PP  +    +PP    +P S  H  PP   +  +       
Sbjct: 403 PPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGL 462

Query: 554 -AVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASP 587
            A+ PPPS    TP   P  ++   P      +S 
Sbjct: 463 PAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSG 497

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 65.6 bits (160), Expect = 5e-11
 Identities = 54/280 (19%), Positives = 75/280 (26%), Gaps = 35/280 (12%)

Query: 279 SGGSGWGGSPAPATSPRSSPPSSSSP--PPPKRKPPVVKPVPAPRPANSPGPFIRPSPPP 336
           S    +  +   A S       S       P +        P   P   P P +     P
Sbjct: 72  SAAVRYNQNAPGAPSVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLW-GTAP 130

Query: 337 PPTSKSSPSTRSHPTPPPPANSP------PKSFHSPPSPPPPPPTHKESPRTHLPPTPPP 390
            P  +   +  S P P  PA                   P  P   ++     +PP    
Sbjct: 131 KPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAA 190

Query: 391 VYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYY 450
                  P+  PP     +  PP    +      + P P       P Q P PP      
Sbjct: 191 F------PQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQ----APAQPPLPPQL---- 236

Query: 451 PPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNP 510
            P     +  P  PG S ++P P      PP PP + + P  P     P     P     
Sbjct: 237 -PQQPPPLQQPQFPGLSQQMPPP------PPQPPQQQQQPPQPQAQPPPQNQPTP----H 285

Query: 511 PPAPEYYHASPPPSGCDIIPPSHHHNPPSWH-HQTPPSPN 549
           P  P+  +A  PP     + P            Q      
Sbjct: 286 PGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLV 325

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 65.3 bits (159), Expect = 6e-11
 Identities = 46/244 (18%), Positives = 64/244 (26%), Gaps = 33/244 (13%)

Query: 344 PSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPP 403
           P        P  A + P +  +P +  P       +     P   P     + +    P 
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424

Query: 404 PPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPP 463
             S          + ++     AP P P          P   P     P      A P P
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPA---------PAAAPAAAARPA----AAGPRP 471

Query: 464 PGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPP 523
              +A              P        APA   AP +  PP     PP      ASP P
Sbjct: 472 VAAAA-----------AAAPARA-----APAAAPAPADDDPPPWEELPPEF----ASPAP 511

Query: 524 SGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVS 583
           +  D  P               P   + + A  P  +P+P     +     P PP    S
Sbjct: 512 AQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASAS 571

Query: 584 YASP 587
               
Sbjct: 572 GLPD 575

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 65.0 bits (159), Expect = 6e-11
 Identities = 47/208 (22%), Positives = 62/208 (29%), Gaps = 23/208 (11%)

Query: 316 PVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPT 375
             PAP  +  P    RP+ P  P + ++P+       P  A++ P       + P   P 
Sbjct: 599 GPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAP---APGVAAPEHHPK 655

Query: 376 HKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYY 435
           H   P         P      +P   PP P+     P  P   A      AP   P    
Sbjct: 656 HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAP--AAPAAPAGAAPAQPAPAPAATPPAGQ 713

Query: 436 VPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPAT 495
               +  PP   +    P      P P P E  + P P+     PPPPP           
Sbjct: 714 ADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPP--------APA 765

Query: 496 PGAPVEYYPPKKGNPPPAPEYYHASPPP 523
           P A           P  AP     S   
Sbjct: 766 PAAA----------PAAAPPPSPPSEEE 783

Length = 824

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.8 bits (158), Expect = 7e-11
 Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 136 VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHL 195
           +  L   N  L G IP  I K+ + L  I L  +++ G +PP +G + +L V D+S+N  
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 196 QGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLP 231
            GS+P S+G + SL  LN+  N  +G +P+++    
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 65.2 bits (159), Expect = 7e-11
 Identities = 59/306 (19%), Positives = 82/306 (26%), Gaps = 9/306 (2%)

Query: 286 GSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPS 345
              A       S     S         VV    A      P           P ++S  +
Sbjct: 28  PGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRST 87

Query: 346 TRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPP 405
                +   PA+   +   +PP P  P P     P    PP+P P  +    P   P PP
Sbjct: 88  PTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPP 147

Query: 406 SHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPG 465
                     +  A  S   +          P+++   P      PPP     A  P P 
Sbjct: 148 PAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPP 207

Query: 466 ESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSG 525
             +   + S  A SP P P R     A A+            G  P         P P  
Sbjct: 208 RRSSPISAS--ASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPEN-----ECPLPRP 260

Query: 526 CDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYA 585
             I  P+       W+  +       + +   P   SP   P SP            S +
Sbjct: 261 APITLPTRIWEASGWNGPSSRPG--PASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSS 318

Query: 586 SPPPPV 591
           S     
Sbjct: 319 SSSRES 324

Length = 1352

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 30/136 (22%), Positives = 37/136 (27%), Gaps = 8/136 (5%)

Query: 331 RPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPP 390
               P PP  +               NS          P    P+   S    +P  P P
Sbjct: 146 EDPNPGPPLDEEDEDA-----DVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSP 200

Query: 391 VYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYY 450
             + S       PP      +  PP    SP +   P PPP     P       PP+   
Sbjct: 201 PEDPSSPSDSSLPPAPSSFQSDTPPP---SPESPTNPSPPPGPAAPPPPPVQQVPPLSTA 257

Query: 451 PPPYQQHMAPPPPPGE 466
            P      A P P G 
Sbjct: 258 KPTPPSASATPAPIGG 273

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 32/128 (25%), Positives = 40/128 (31%), Gaps = 5/128 (3%)

Query: 304 PPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSF 363
            P P           A   +++  P     P     S    S+   P+ P P   P    
Sbjct: 149 NPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPS 208

Query: 364 HSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPST 423
            S   P P        P +   PT P     SP P    PPP      PP  T K +P +
Sbjct: 209 DSSLPPAPSSFQSDTPPPSPESPTNP-----SPPPGPAAPPPPPVQQVPPLSTAKPTPPS 263

Query: 424 HYAPPPPP 431
             A P P 
Sbjct: 264 ASATPAPI 271

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 61.6 bits (149), Expect = 8e-10
 Identities = 53/242 (21%), Positives = 71/242 (29%), Gaps = 29/242 (11%)

Query: 289 APATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSP---PPPPTSKSSPS 345
           AP      +PP +S   PP +  P V   P P P  +  P I P+P   P          
Sbjct: 335 APVEPVTQTPPVASVDVPPAQ--PTVAWQPVPGP-QTGEPVIAPAPEGYPQQSQYAQPAV 391

Query: 346 TRSHP-----TPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKH 400
             + P      P  P  +P       P+  P      E P       P P   V+ +   
Sbjct: 392 QYNEPLQQPVQPQQPYYAPAA---EQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQ 448

Query: 401 FPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAP 460
                S +      P         Y  P      Y   Q     P VE  P P  +   P
Sbjct: 449 AEEQQSTFA-----PQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVE--PEPVVEETKP 501

Query: 461 PPPP------GESAEVPAPSYFA--YSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPP 512
             PP       E          A  Y P P P ++  P+  +     V   PP +     
Sbjct: 502 ARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAV 561

Query: 513 AP 514
           +P
Sbjct: 562 SP 563

Length = 1355

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 61.3 bits (149), Expect = 9e-10
 Identities = 25/140 (17%), Positives = 40/140 (28%), Gaps = 8/140 (5%)

Query: 331 RPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPP 390
           +P+      + +   T + P    PA +P     + P+P   P            P  PP
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAAS------APAAPP 418

Query: 391 VYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYY 450
               +P      P  +     P       + +        P    +P +  P P      
Sbjct: 419 AA--APPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAA 476

Query: 451 PPPYQQHMAPPPPPGESAEV 470
           P P     A    P E  +V
Sbjct: 477 PAPAAAPAAARLTPTEEGDV 496

Length = 618

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 59.5 bits (144), Expect = 3e-09
 Identities = 35/160 (21%), Positives = 46/160 (28%), Gaps = 6/160 (3%)

Query: 426 APPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPA 485
            PPP  R    P+   P   P E Y  P      P  P  +      P+Y AY   P P 
Sbjct: 97  PPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPG 156

Query: 486 RDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQ-- 543
                            +PP+     PA             D   P +      + H   
Sbjct: 157 AWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRP 216

Query: 544 --TPPSPNYHSYAVPPPPSPSPP--TPPPSPYDNTPLPPI 579
               P  +      PPP +       P P   D+ P+ PI
Sbjct: 217 DWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPI 256

Length = 617

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.1 bits (143), Expect = 3e-09
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 4/95 (4%)

Query: 289 APATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRS 348
            P  +P+ + P++++P P +  P       A   AN P          PP     P    
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420

Query: 349 HPTPPPPANSPPKSFH----SPPSPPPPPPTHKES 379
            P  P  A    ++       P   PP PP  +E 
Sbjct: 421 VPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEK 455

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 59.2 bits (144), Expect = 5e-09
 Identities = 36/164 (21%), Positives = 48/164 (29%), Gaps = 2/164 (1%)

Query: 244 TGEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSS 303
               P+  AA    G   AA PA+ S                 +   A+      P+ + 
Sbjct: 617 APAAPAAPAAPAPAGA--AAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAG 674

Query: 304 PPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSF 363
              P   PP   P     PA +      P+P   P +  +    + P       S P   
Sbjct: 675 GAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPA 734

Query: 364 HSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSH 407
              P P PP P     P       PPP      +     PPPS 
Sbjct: 735 ADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSP 778

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 59.0 bits (143), Expect = 5e-09
 Identities = 27/145 (18%), Positives = 42/145 (28%), Gaps = 20/145 (13%)

Query: 290 PATSPRSSPPSSSSPP-PPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRS 348
           PA +  ++ P+    P  P+   P   PV     A +P          P  + S+P    
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAA-------APAAAASAP---- 414

Query: 349 HPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHY 408
              PP  A   P +  +P +  P            L P PP       +       P   
Sbjct: 415 -AAPPAAAPPAPVA--APAAAAPAAAPAAAPAAVALAPAPPA-----QAAPETVAIPVRV 466

Query: 409 HNTPPPPTKKASPSTHYAPPPPPRF 433
              P   +   +P+   A       
Sbjct: 467 APEPAVASAAPAPAAAPAAARLTPT 491

Length = 618

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 58.3 bits (142), Expect = 6e-09
 Identities = 35/174 (20%), Positives = 51/174 (29%), Gaps = 25/174 (14%)

Query: 259 RMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVP 318
           RM+A  PA                     P P   P+S+ P++S+         V  P  
Sbjct: 355 RMLAFHPAA------------------PLPEPEVPPQSAAPAASAQATAAPTAAVAPPQA 396

Query: 319 APRPA-NSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHK 377
              P   +  P   P+ P P T+    + R        A    KS   P +     P + 
Sbjct: 397 PAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKS--EPAAASRARPVNS 454

Query: 378 ESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPP 431
              R  L    P    +  +P         +  T P   KK   +T  A     
Sbjct: 455 ALER--LASVRPAPSALEKAPA--KKEAYRWKATNPVEVKKEPVATPKALKKAL 504

Length = 647

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.8 bits (140), Expect = 9e-09
 Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 3/134 (2%)

Query: 259 RMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPK-RKPPVVKPV 317
           R++A +PA  ++        +       +PA A   +++   + +  P      P   P 
Sbjct: 360 RLLAFKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPA 419

Query: 318 PAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPP-ANSPPKSFHSPPSPPPPPPTH 376
            AP    +      P+  P     +     + P    P   + P      P+     P  
Sbjct: 420 AAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 377 KESPR-THLPPTPP 389
             +P    L PT  
Sbjct: 480 AAAPAAARLTPTEE 493

Length = 618

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 47/235 (20%), Positives = 60/235 (25%), Gaps = 36/235 (15%)

Query: 289 APATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRS 348
           A    P +  P+   P   +   P    +P P      G     +   PP          
Sbjct: 85  AITVDPSAGEPAPPPPHARRTSEP---ELPRPGRRPYEGYGGPRADDRPPGLPRQDQL-- 139

Query: 349 HPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHY 408
            PT  P    P       P   P         +  L   P   Y    SP  + P     
Sbjct: 140 -PTARPAY--PAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPY---ASPASYAPEQERD 193

Query: 409 HNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESA 468
               P    +            PR               ++  P   +   P PPPG   
Sbjct: 194 R--EPYDAGRPEYDQRRRDYDHPRP--------------DWDRPRRDRTDRPEPPPGAGH 237

Query: 469 EVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPP 523
                       P PP RD+ PV P  P AP       +  P P P    A   P
Sbjct: 238 VHRG-------GPGPPERDDAPVVPIRPSAPG--PLAAQPAPAPGPGEPTARLNP 283

Length = 617

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 57.5 bits (139), Expect = 1e-08
 Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 8/107 (7%)

Query: 313 VVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPP 372
           V++ +  P PA  P     P+   P   + +P+  + P     AN PPK          P
Sbjct: 355 VIEALLVPVPAPQPAK---PTAAAPSPVRPTPAPSTRPKAAAAANIPPKE--PVRETATP 409

Query: 373 PPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKA 419
           PP     PR   PP P    +     +   P       TPP P K+ 
Sbjct: 410 PPV---PPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEE 453

Length = 585

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 57.3 bits (139), Expect = 2e-08
 Identities = 42/190 (22%), Positives = 47/190 (24%), Gaps = 6/190 (3%)

Query: 402 PPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPP 461
           P P +     PP P     P     P  P      P    P                   
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAA-PAAPAAPAPAGAAAAPAEASAAPAPGVA 648

Query: 462 PPPGESAEVPAPSYFAYSPP-PPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHAS 520
            P      V  P         P  A    P AP    AP        G  P  P    A+
Sbjct: 649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAP-AAPAGAAPAQPAPAPAA 707

Query: 521 PPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPII 580
            PP+G    P +    PP                VP PP P  P  P       P PP  
Sbjct: 708 TPPAGQADDPAAQ---PPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAP 764

Query: 581 GVSYASPPPP 590
             + A    P
Sbjct: 765 APAAAPAAAP 774

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 29/112 (25%), Positives = 39/112 (34%), Gaps = 1/112 (0%)

Query: 287 SPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPST 346
           S        + P S+S   PP   P V      P   +SP     P  P    S + P +
Sbjct: 168 SDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPS 227

Query: 347 RSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSP 398
              PT P P   P      P    PP  T K +P +    TP P+  ++   
Sbjct: 228 PESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSA-SATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 49.1 bits (118), Expect = 6e-08
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243
           NL   D+S N L      +   + +L+ L+++ N  T + P +   LP+L++   S N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 55.2 bits (133), Expect = 7e-08
 Identities = 54/254 (21%), Positives = 68/254 (26%), Gaps = 30/254 (11%)

Query: 348 SHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSH 407
           +    P    S   S  SP        +        L P P  ++  +P P+  PP    
Sbjct: 84  APSVGPDSDLSQKTSTFSP-CQSGYEASTDPEYIPDLQPDPS-LWGTAPKPEPQPPQAPE 141

Query: 408 YHNTPPPPTKK-----------ASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQ 456
               P  P +K                    P PP+   +P+  PP         PP Q 
Sbjct: 142 SQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQV-LPQGMPPRQAAFPQQGPPEQP 200

Query: 457 HMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEY 516
              P PP G   +V          P P      P  P          PP +    P    
Sbjct: 201 PGYPQPPQGHPEQVQPQQ----FLPAPSQAPAQPPLPPQLPQQP---PPLQQPQFPGLSQ 253

Query: 517 YHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPL 576
               PPP      PP     PP    Q PP         P P  P     P  P     L
Sbjct: 254 QMPPPPPQ-----PPQQQQQPPQPQAQPPPQNQ----PTPHPGLPQGQNAPLPPPQQPQL 304

Query: 577 PPIIGVSYASPPPP 590
            P++         P
Sbjct: 305 LPLVQQPQGQQRGP 318

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 37/181 (20%), Positives = 47/181 (25%), Gaps = 5/181 (2%)

Query: 413 PPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPA 472
            P T  A+P    A P P           P  PP      P     A       +   PA
Sbjct: 373 GPATAAAAPV---AQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPA 429

Query: 473 PSYFAYSPPPPPARDENPVAPAT--PGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIP 530
           P   A +            APA     AP     P    P P      A+P  +     P
Sbjct: 430 PEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAP 489

Query: 531 PSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPP 590
                +PP W    P   +         P+       P P    P      ++ A    P
Sbjct: 490 APADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAP 549

Query: 591 V 591
            
Sbjct: 550 A 550

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 34/154 (22%), Positives = 49/154 (31%), Gaps = 11/154 (7%)

Query: 247 PPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPP 306
             +  A A    R   A  A  +  Q    G  G      +PA A +  + P ++   P 
Sbjct: 413 AAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPV 472

Query: 307 P---KRKPPVVKPVPAPRPANSPGPFIR------PSPPPPPTSKSSPSTRSHPTPPPPAN 357
                  P    P  AP PA+   P          SP P     +     +   P P   
Sbjct: 473 AAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATA 532

Query: 358 SPPKSFHS-PPSPPPPP-PTHKESPRTHLPPTPP 389
            P  +F +  P+P   P P    +    + P PP
Sbjct: 533 DPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPP 566

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 54.6 bits (132), Expect = 1e-07
 Identities = 33/138 (23%), Positives = 49/138 (35%), Gaps = 9/138 (6%)

Query: 253 AAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPP 312
           +A    R + AR       +  R  G  G   G   A A S  ++ P+++  P       
Sbjct: 366 SASDDERGLLARLE-----RLERRLGVAGGA-GAPAAAAPSAAAAAPAAAPAPAAAAPAA 419

Query: 313 VVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPP 372
              P PA  P  +P P      P PP+   +      P+PPP A    +   +P + P P
Sbjct: 420 AAAPAPAAAPQPAPAP---APAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEP 476

Query: 373 PPTHKESPRTHLPPTPPP 390
                 +P     P   P
Sbjct: 477 TAAPAPAPPAAPAPAAAP 494

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 54.6 bits (132), Expect = 1e-07
 Identities = 31/139 (22%), Positives = 42/139 (30%), Gaps = 14/139 (10%)

Query: 309 RKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPS 368
           R+  V     AP  A        P+  P P   ++ +  +   P P A   P      P+
Sbjct: 383 RRLGVAGGAGAPAAAAPSAAAAAPAAAPAP---AAAAPAAAAAPAPAAAPQP---APAPA 436

Query: 369 PPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPP 428
           P P PP+   +      P+PPP    S  P   P          P      +P    AP 
Sbjct: 437 PAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAA-----PEPTAAPAPAPPAAPAPA 491

Query: 429 PPPRFYYVPKQSPPPPPPV 447
             P     P     P    
Sbjct: 492 AAPA---APAAPAAPAGAD 507

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 47/225 (20%), Positives = 60/225 (26%), Gaps = 23/225 (10%)

Query: 384 LPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPST-HYAPPPPPRFYYVPKQSPP 442
                  +   + +            +    P  +  PS    AP P P+    P+  P 
Sbjct: 86  SVGPDSDLSQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQ 145

Query: 443 PPPP---------VEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAP 493
           P  P         VE      QQ    P PP +      P          P +      P
Sbjct: 146 PQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPP----RQAAFPQQGPPEQPP 201

Query: 494 ATPGAPVEYYPPKKGN-----PPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSP 548
             P  P  +    +       P  AP      P        PP      P    Q PP P
Sbjct: 202 GYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ--QPPPLQQPQFPGLSQQMPPPP 259

Query: 549 NYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPPVIP 593
                    PP P    PP +    TP P +     A  PPP  P
Sbjct: 260 PQPPQQQQQPPQPQAQPPPQNQ--PTPHPGLPQGQNAPLPPPQQP 302

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 37/183 (20%), Positives = 50/183 (27%)

Query: 283 GWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKS 342
                 +    P S P  +SS   P+ + P   P           P    S      S S
Sbjct: 267 TRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSS 326

Query: 343 SPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFP 402
           S ++ S  +    A SP  S    PSP  PPP    S     P       + + S     
Sbjct: 327 SSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPT 386

Query: 403 PPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPP 462
              +          + A+       P P                    P       +PPP
Sbjct: 387 RRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPGSPPP 446

Query: 463 PPG 465
           PPG
Sbjct: 447 PPG 449

Length = 1352

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 25/111 (22%), Positives = 30/111 (27%), Gaps = 6/111 (5%)

Query: 279 SGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPP 338
           +   G    PA A+       S   P  P        P  +  P   P P    S     
Sbjct: 170 NSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLP---PAP---SSFQSDT 223

Query: 339 TSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPP 389
              S  S  +   PP PA  PP      P      PT   +  T  P    
Sbjct: 224 PPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 286 GSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPP-PPTSKSSP 344
            +PAP+T P+++  ++  P  P R+     P   PRP   P P    S P     +    
Sbjct: 381 PTPAPSTRPKAAAAANIPPKEPVRETAT-PPPVPPRPVAPPVPHTPESAPKLTRAAIPVD 439

Query: 345 STRSHPTPPPPA 356
               +  P PP 
Sbjct: 440 EKPKYTPPAPPK 451

Length = 585

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 79/314 (25%), Positives = 108/314 (34%), Gaps = 27/314 (8%)

Query: 292 TSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPT 351
           ++P   P    SP PP +     +  P P   +S  P      P PP        +    
Sbjct: 228 SAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPM--PHALQQGPVF 285

Query: 352 PPPPANSPPKSFHSPPSPPPPPPTHKES-PRTHLPPTPPPVY-NVSPSPKHFPPPPSHYH 409
              P+++PP+ F    S  PP P   ++ P +H PP+   +     P  +  PP PS  H
Sbjct: 286 LQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPH 345

Query: 410 NTPPP--PTKKASPSTHYAPP---PPPRFYYVPKQSPPPPP-----------PVEYYPPP 453
             PPP  P  +    +H  PP    P  F  +P   PPPP            P   +PPP
Sbjct: 346 IKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPP 405

Query: 454 YQQHMAPPPPPGESAEVPAPSYFAYSPP-----PPPARDENPVAPATPGAP-VEYYPPKK 507
            Q      P     A+ P  +     PP     P       P        P      P  
Sbjct: 406 LQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAI 465

Query: 508 GNPPPAPEYYHASPPPSGCDIIPPSHHHNP-PSWHHQTPPSPNYHSYAVPPPPSPSPPTP 566
           G PP  P    A+PP +     PP              PP P       P   +  P +P
Sbjct: 466 GPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESP 525

Query: 567 PPSPYDNTPLPPII 580
           PP P   +P P ++
Sbjct: 526 PPPPRSPSPEPTVV 539

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 40/206 (19%), Positives = 49/206 (23%), Gaps = 24/206 (11%)

Query: 366 PPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHY 425
           P  PPP      E         P   Y                     PP          
Sbjct: 95  PAPPPPHARRTSEPELPRPGRRPYEGY-------------GGPRADDRPPGLPRQDQLPT 141

Query: 426 APPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPA 485
           A P  P +   P+    P    + Y    Q+   PP  P  S    AP       P    
Sbjct: 142 ARPAYPAYQQRPEPGAWPRAA-DDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAG 200

Query: 486 RDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTP 545
           R E          P   +   + +    PE     PP +G       H   P        
Sbjct: 201 RPEYDQRRRDYDHPRPDWDRPRRDRTDRPE----PPPGAGHV-----HRGGPGPPERDDA 251

Query: 546 PSPNYHSYA-VPPPPSPSPPTPPPSP 570
           P       A  P    P+P   P  P
Sbjct: 252 PVVPIRPSAPGPLAAQPAPAPGPGEP 277

Length = 617

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 53.7 bits (130), Expect = 2e-07
 Identities = 23/155 (14%), Positives = 37/155 (23%), Gaps = 17/155 (10%)

Query: 320 PRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKES 379
           P            S  P  +++++ +  +   PP     PP    +P   P  P     S
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 380 PRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQ 439
                          + + K  P   S          +  + +        P     P  
Sbjct: 421 QLLAARQQLQRAQGATKAKKSEPAAAS--------RARPVNSALERLASVRP----APSA 468

Query: 440 SPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPS 474
               P   E Y        A  P   +   V  P 
Sbjct: 469 LEKAPAKKEAYRWK-----ATNPVEVKKEPVATPK 498

Length = 647

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 16/89 (17%), Positives = 27/89 (30%)

Query: 288 PAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTR 347
              A +   + P +++PP P   P    P  AP  A +        P        +   R
Sbjct: 406 APAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVR 465

Query: 348 SHPTPPPPANSPPKSFHSPPSPPPPPPTH 376
             P P   + +P  +     +   P    
Sbjct: 466 VAPEPAVASAAPAPAAAPAAARLTPTEEG 494

Length = 618

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 19/59 (32%), Positives = 27/59 (45%)

Query: 42  LAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEF 100
           L    +++NR   +    F+ L  L  +DLS N      P+ F  LP L+ LDL  N  
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 29/137 (21%), Positives = 36/137 (26%), Gaps = 15/137 (10%)

Query: 286 GSPAPATSPRSSPPSSSSPPPPKRKPPVVK--PVPAPRPANSPGPFIRPSPPPPPTSKSS 343
           G       P       +                 PA    + P       P  P   +  
Sbjct: 145 GEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDP 204

Query: 344 PSTRSHPTPPPPAN----SPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPK 399
            S      PP P++    +PP S  SP +P PPP              PPP     P   
Sbjct: 205 SSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPA---------APPPPPVQQVPPLS 255

Query: 400 HFPPPPSHYHNTPPPPT 416
              P P     TP P  
Sbjct: 256 TAKPTPPSASATPAPIG 272

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 52.6 bits (126), Expect = 6e-07
 Identities = 56/245 (22%), Positives = 72/245 (29%), Gaps = 47/245 (19%)

Query: 285  GGSPAPATSPRSSPPSSSSPPPPKRKP-PVVKPVPAPRPANSPGPFIRP--SPPPPPTSK 341
            GGS AP    R  PPS S    P     P V+ +  P  + S   F  P   P  PP  +
Sbjct: 2853 GGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQ 2912

Query: 342  SSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHF 401
            + P  +  P PPPP    P     P   PP  PT   +         P  +  +  P   
Sbjct: 2913 APPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRV 2972

Query: 402  P-------------------PPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPP 442
                                 PP   H+     +  +S + H    PPP      KQ+  
Sbjct: 2973 AVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSL---KQTLW 3029

Query: 443  PPPPVEYY----------------------PPPYQQHMAPPPPPGESAEVPAPSYFAYSP 480
            PP   E                        P P+      P P    A         + P
Sbjct: 3030 PPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEAGARESPSSQFGP 3089

Query: 481  PPPPA 485
            PP  A
Sbjct: 3090 PPLSA 3094

Length = 3151

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 52.4 bits (125), Expect = 6e-07
 Identities = 78/308 (25%), Positives = 95/308 (30%), Gaps = 22/308 (7%)

Query: 293 SPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTP 352
           SP+ +   S S    +   P   P     P  +  P   P  P         S  +    
Sbjct: 156 SPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAALAPSAPPPTPSAQAVPPQGSPIAAQPA 215

Query: 353 PPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTP 412
           P P    P S  S PS  P        P      +       +PS +H  P  SH+   P
Sbjct: 216 PQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRH--PQSSHHGPGP 273

Query: 413 PPPTKKASPSTHYAPP---PPPRFYYVPKQSPPPPPPVEYYP----PPYQQHMAPPPPPG 465
           P P            P   PP  F     Q PP P P +  P    PP Q  + P  PP 
Sbjct: 274 PMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPR 333

Query: 466 ESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSG 525
           E    PAPS     PPP     + P            +PP    P P P+     PPP  
Sbjct: 334 EQPLPPAPSMPHIKPPPTTPIPQLP-------NQSHKHPPHLQGPSPFPQMPSNLPPPPA 386

Query: 526 CDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYA 585
              +     H+PPS H      P          P  S P  PP    +  LPP       
Sbjct: 387 LKPLSSLPTHHPPSAH------PPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPH 440

Query: 586 SPPPPVIP 593
           S      P
Sbjct: 441 SGLHSGPP 448

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 52.1 bits (125), Expect = 7e-07
 Identities = 47/287 (16%), Positives = 73/287 (25%), Gaps = 33/287 (11%)

Query: 286 GSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSP- 344
            S  PA  P S+PP+++SP PP+R  P+     +P PA               +S S   
Sbjct: 186 PSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESS 245

Query: 345 -------STRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPS 397
                  +    P P P          S  + P   P    S  +    +P P  +   S
Sbjct: 246 GCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGS 305

Query: 398 PKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQH 457
                 P +   ++    +  +S S+                  P P P           
Sbjct: 306 GPAPSSPRASSSSSSSRESSSSSTSSSSESSRGA-------AVSPGPSP----------- 347

Query: 458 MAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYY 517
            +  P P        P        P      +    +   +       +           
Sbjct: 348 -SRSPSPSRPPPPADP------SSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARR 400

Query: 518 HASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPP 564
             +          PS      +        P       P P SP PP
Sbjct: 401 RDATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPSGEPWPGSPPPP 447

Length = 1352

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 32/147 (21%), Positives = 38/147 (25%), Gaps = 17/147 (11%)

Query: 369 PPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPP 428
           P P PP  +E     +  T         S       P+    + PP       S+   P 
Sbjct: 148 PNPGPPLDEEDEDADVATTNSD-----NSFPGEDADPASASPSDPPS------SSPGVPS 196

Query: 429 PPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDE 488
            P         S    PP     P   Q   PPP P        P   A  PPPP  +  
Sbjct: 197 FPSPPEDPSSPSDSSLPP----APSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVP 252

Query: 489 NPV--APATPGAPVEYYPPKKGNPPPA 513
                 P  P A     P         
Sbjct: 253 PLSTAKPTPPSASATPAPIGGITLDDD 279

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 52/246 (21%), Positives = 80/246 (32%), Gaps = 54/246 (21%)

Query: 43  AIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRF----VGKFPKLFLSLPKLKYLDLRFN 98
                   R    +     +   L E+DLS+N       G      L    L+ L L  N
Sbjct: 60  LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE-SLLRSSSLQELKLN-N 117

Query: 99  EFEGSVPSKLFDK-------DLDAIFLNDNRFQFGIPENLG-----NSPVSVLVFANNDL 146
              G    +L  K        L+ + L  NR +    E L      N  +  L  ANN +
Sbjct: 118 NGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI 177

Query: 147 GGCIPG-----SIGKMGKTLNEIILMNDN---------LTGCLPPQIGMLKNLTVFDVSF 192
           G    G        K    L E++ +N+N         L   L      LK+L V ++  
Sbjct: 178 GD--AGIRALAEGLKANCNL-EVLDLNNNGLTDEGASALAETLAS----LKSLEVLNLGD 230

Query: 193 NHLQGS------LPSSIGNMKSLEQLNVAHNRFT--GVIPSSVCQL----PNLQNFTYSF 240
           N+L           + +    SL  L+++ N  T  G     + ++     +L       
Sbjct: 231 NNL-TDAGAAALASALLSPNISLLTLSLSCNDITDDGAK--DLAEVLAEKESLLELDLRG 287

Query: 241 NYFTGE 246
           N F  E
Sbjct: 288 NKFGEE 293

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.6 bits (124), Expect = 9e-07
 Identities = 26/121 (21%), Positives = 34/121 (28%), Gaps = 4/121 (3%)

Query: 404 PPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPP 463
           P +      P   K  +     AP   P        +P   P      P      APP P
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAP 425

Query: 464 PGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPP 523
               A     +    +P   PA      AP    AP     P +  P PA      +P  
Sbjct: 426 VAAPAAAAPAA----APAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAA 481

Query: 524 S 524
           +
Sbjct: 482 A 482

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 51.5 bits (123), Expect = 1e-06
 Identities = 48/227 (21%), Positives = 63/227 (27%), Gaps = 22/227 (9%)

Query: 305 PPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFH 364
           PPP       +     R A  P P    + P    +       +     P A   P    
Sbjct: 257 PPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAP---- 312

Query: 365 SPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHN------TPPPPTKK 418
            P  PPP P    E            +  VSP P+     P  +        TPP   + 
Sbjct: 313 -PDPPPPAPAGDAEEEDDED----GAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLED 367

Query: 419 ASPSTHYAP--PPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYF 476
            S   H+      P R     + +     P    P    Q     P P            
Sbjct: 368 LSAGRHHPKRASLPTR---KRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVP 424

Query: 477 AYSPPPP--PARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASP 521
           A +PPPP  P     P +   P  P E  PP     P   +   A+ 
Sbjct: 425 ASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATR 471

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 28/138 (20%), Positives = 41/138 (29%), Gaps = 8/138 (5%)

Query: 441 PPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPV 500
            P P P                      E   P+    S  P      +P  P+ P  P 
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPA----SASPSDPPSSSPGVPSFPSPPE 202

Query: 501 EYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPS 560
           +   P   + PPAP  + +  PP       P++   PP      PP P            
Sbjct: 203 DPSSPSDSSLPPAPSSFQSDTPPP--SPESPTNPSPPPGPA--APPPPPVQQVPPLSTAK 258

Query: 561 PSPPTPPPSPYDNTPLPP 578
           P+PP+   +P     +  
Sbjct: 259 PTPPSASATPAPIGGITL 276

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 31/119 (26%), Positives = 37/119 (31%), Gaps = 26/119 (21%)

Query: 370 PPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPP 429
           P P P     P       P PV    P+P     P +      PP       +T   PP 
Sbjct: 362 PVPAPQ----PAKPTAAAPSPV---RPTPAPSTRPKAAAAANIPPKEPVRETAT--PPPV 412

Query: 430 PPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDE 488
           PPR    P   P P  P                P    A +P      Y+PP PP  +E
Sbjct: 413 PPR----PVAPPVPHTP-------------ESAPKLTRAAIPVDEKPKYTPPAPPKEEE 454

Length = 585

>gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.6 bits (123), Expect = 1e-06
 Identities = 40/203 (19%), Positives = 56/203 (27%), Gaps = 16/203 (7%)

Query: 301 SSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPP--PPPTSKSSPSTRSHPTPPPPANS 358
           S S    +++    KP P P    +  P    S    P     + P +       PP   
Sbjct: 379 SPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENNDVPPWED 438

Query: 359 PPKSFHSPPSPPPPPPTHKESPRTHLPPTPPP--------VYNVSPSPKHFPPPPSHYHN 410
            P    +         + K         TPP           N + +P    P  +    
Sbjct: 439 APDEAQTAA--GTAQTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQA 496

Query: 411 TPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEV 470
           TP     +     H AP  P   Y  P    PP    E  PP ++         G + E 
Sbjct: 497 TPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAEIPPPDWEHAAPADTAGGGADEE 556

Query: 471 PAPSYFAYSP----PPPPARDEN 489
                   +     PPP    EN
Sbjct: 557 AEAGGIGGNNTPSAPPPEFSTEN 579

Length = 709

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 32/131 (24%), Positives = 39/131 (29%), Gaps = 9/131 (6%)

Query: 355 PANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPP 414
             N  P +     +  P P    + P     P  P    V   P+   PP       P  
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQP----VQQPPEAQVPPQHAPR--PAQ 123

Query: 415 PTKKASPSTHYAPPPP-PRFYYVPKQSPPPPPPVEYYPPPYQQ--HMAPPPPPGESAEVP 471
           P  +      Y P P  P    V  Q  P P PV   P P QQ    A P    +   V 
Sbjct: 124 PAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVA 183

Query: 472 APSYFAYSPPP 482
            P+     P  
Sbjct: 184 EPAPVMDKPKR 194

Length = 333

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 6/130 (4%)

Query: 2   GVFCARSPFNSPSLR-VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTF 60
           G  C    F+S   +  +  + L++  + G++P +I +L  L   +++ N   G +P + 
Sbjct: 406 GADCQ---FDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL 462

Query: 61  RRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLN- 119
             +  L  +DLS N F G  P+    L  L+ L+L  N   G VP+ L  + L     N 
Sbjct: 463 GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522

Query: 120 -DNRFQFGIP 128
            DN    GIP
Sbjct: 523 TDNAGLCGIP 532

Length = 623

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.2 bits (121), Expect = 2e-06
 Identities = 28/160 (17%), Positives = 36/160 (22%), Gaps = 21/160 (13%)

Query: 340 SKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPK 399
           +   P     P    PA S   +     +  PP       P    P   P V     + +
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421

Query: 400 HFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMA 459
                            KK+ P    A     R         P    +E           
Sbjct: 422 LLAARQQLQRAQGATKAKKSEP----AAASRAR---------PVNSALERLASV-----R 463

Query: 460 PPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAP 499
           P P   E A        AY        +      ATP A 
Sbjct: 464 PAPSALEKAPAKKE---AYRWKATNPVEVKKEPVATPKAL 500

Length = 647

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 13/95 (13%)

Query: 286 GSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPS 345
            S + + + ++ PP   SPPPP   PP+ +P     P         P+PPPPP + +  S
Sbjct: 513 QSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPP---------PTPPPPPPTATQAS 563

Query: 346 TRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESP 380
           + +    P  ++ PP      P  P P PT   SP
Sbjct: 564 SNAPAQIPADSSPPPP----IPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 12/83 (14%)

Query: 299 PSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANS 358
           PS +  P  K+K P       P+P   PGP    +P   P    SP++   P   PP   
Sbjct: 382 PSPAGSPDVKKKAP---EPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPP--- 435

Query: 359 PPKSFHSPPSPPPPPPTHKESPR 381
                    S P PP     +PR
Sbjct: 436 ------VARSAPLPPSPQASAPR 452

Length = 620

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 49.8 bits (119), Expect = 3e-06
 Identities = 25/93 (26%), Positives = 50/93 (53%)

Query: 14  SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSN 73
           SL  +  + L+   ++G +P E+     L    ++ N+  G +P++F  + +L ++DLS 
Sbjct: 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556

Query: 74  NRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPS 106
           N+  G+ PK   ++  L  +++  N   GS+PS
Sbjct: 557 NQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 40/189 (21%), Positives = 54/189 (28%), Gaps = 5/189 (2%)

Query: 247 PPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPP 306
           P +   A        AA PA  +  +      +  S    + A A    +  P  +  P 
Sbjct: 392 PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

Query: 307 PKRKPPVVKPVPAPRPA-NSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHS 365
           P    P   P  A RPA   P P    +   P  +  + +       PPP    P  F S
Sbjct: 452 PA---PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFAS 508

Query: 366 P-PSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTH 424
           P P+ P   P    +     P T  P              P+        P     P   
Sbjct: 509 PAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRA 568

Query: 425 YAPPPPPRF 433
            A   P  F
Sbjct: 569 SASGLPDMF 577

Length = 700

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 31/124 (25%), Positives = 37/124 (29%), Gaps = 15/124 (12%)

Query: 480 PPPPPARDEN----PVAPATPGAPVEYYPPK--KGNPPPAPEYYHASPPPSGCDIIPPSH 533
           P P P  DE      VA                  +P   P      P        P   
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSF------PSPP 201

Query: 534 HHNPPSWHHQTPPSPNYHSYAVPP--PPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPPV 591
                      PP+P+      PP  P SP+ P+PPP P    P PP+  V   S   P 
Sbjct: 202 EDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAA-PPPPPVQQVPPLSTAKPT 260

Query: 592 IPYY 595
            P  
Sbjct: 261 PPSA 264

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 58/267 (21%), Positives = 78/267 (29%), Gaps = 22/267 (8%)

Query: 307 PKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSP 366
           P ++ P  +   A  P   P   + P  P PP  +  P  ++    P    +  +    P
Sbjct: 324 PSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKPP 383

Query: 367 PSPPPPPPTHKESPRTHLPPTPPPVY-NVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHY 425
            SP P PP+   +    +     P   +V PSP                  KK  P + Y
Sbjct: 384 TSPIPTPPSSSPASSKSVDAVAKPAEPDVVPSPG--SASNVPEVEPAQVEAKKTRPLSPY 441

Query: 426 APPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAP------PPPPGESAEVPAPSYFAYS 479
           A     +    P  SP P  P    P        P      P      A  P P+     
Sbjct: 442 ARYEDLK----PPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPL 497

Query: 480 PPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPS 539
            P     D  P    +P APV         P    E            +    HH  P  
Sbjct: 498 SPYAVYDDLKPPTSPSPAAPVGKVA-----PSSTNEVVKVGNSAPPTALADEQHHAQP-- 550

Query: 540 WHHQTPPSPNYHSYAVPPPPSPSPPTP 566
                P SP      + PP SP+P   
Sbjct: 551 --KPRPLSPYTMYEDLKPPTSPTPSPV 575

Length = 576

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.9 bits (120), Expect = 3e-06
 Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 4/88 (4%)

Query: 297 SPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPA 356
            P S+++P             PA  PA        P+PP      + P   +        
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 357 NSPPKSFHSPPSPPPPPPTHKESPRTHL 384
            +PP       +   P     E   T L
Sbjct: 97  AAPPA----AAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 26/140 (18%), Positives = 33/140 (23%), Gaps = 21/140 (15%)

Query: 440 SPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAP 499
           +  P        P      A P     +A  PA          P A    P AP     P
Sbjct: 372 AAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAA--------APAAAASAPAAPPAAAPP 423

Query: 500 VEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPP---SWHHQTPPSPNYHSYAVP 556
                P    P  AP        P+   + P       P   +   +  P P     AV 
Sbjct: 424 APVAAPAAAAPAAAPA-----AAPAAVALAPAPPAQAAPETVAIPVRVAPEP-----AVA 473

Query: 557 PPPSPSPPTPPPSPYDNTPL 576
                    P  +    T  
Sbjct: 474 SAAPAPAAAPAAARLTPTEE 493

Length = 618

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 259 RMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVP 318
           R +   P          GGG GG   GG    A +  ++P ++++ P        +  VP
Sbjct: 385 RRLQEGPP-------SPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVP 437

Query: 319 APRPANSPGPFIRPSPPPPPTSKS 342
               A +  P    +P P     S
Sbjct: 438 DAAAAAAAPPAPAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 28/143 (19%), Positives = 39/143 (27%), Gaps = 16/143 (11%)

Query: 408 YHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGES 467
            +  PP   +                      +   P      PP     +   P P E 
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSD----PPSSSPGVPSFPSPPED 203

Query: 468 AEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCD 527
              P+ S    S PP P+  ++   P +P +P         NP P P      PPP    
Sbjct: 204 PSSPSDS----SLPPAPSSFQSDTPPPSPESP--------TNPSPPPGPAAPPPPPVQQV 251

Query: 528 IIPPSHHHNPPSWHHQTPPSPNY 550
               +    PPS      P    
Sbjct: 252 PPLSTAKPTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 5e-06
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 161 LNEIILMNDNLTGCLPPQI-GMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRF 219
           L  + L N+ LT  +P      L NL V D+S N+L    P +   + SL  L+++ N  
Sbjct: 2   LKSLDLSNNRLTV-IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.8 bits (116), Expect = 9e-06
 Identities = 54/240 (22%), Positives = 71/240 (29%), Gaps = 38/240 (15%)

Query: 274 GRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPK------RKPPVVKPVPAPRPANSPG 327
           G G         G+  P   P ++ P+ ++ PP           P+  P P   P  +P 
Sbjct: 262 GEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPA 321

Query: 328 -------------PFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSF--HSPPSPPPP 372
                          + P P P          R  PT  PP++    S   H P     P
Sbjct: 322 GDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLP 381

Query: 373 PPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPR 432
               + +     P    P  +    P    P P+        PT   +P    APPPP  
Sbjct: 382 TRKRRSARHAATPFARGPGGDDQTRPA--APVPA------SVPTPAPTPVPASAPPPPAT 433

Query: 433 FYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYF-----AYSPPPPPARD 487
               P  S  P       PPP +Q  AP   P       A            PP PP  D
Sbjct: 434 ----PLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGAD 489

Length = 3151

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 38/176 (21%), Positives = 50/176 (28%), Gaps = 10/176 (5%)

Query: 286 GSPAPATSPRSSPPSSSSPPP--PKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSS 343
             P     P+  PP  ++ P   P  +PP     P   P         P+P   P     
Sbjct: 173 PQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPL 232

Query: 344 PSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPP 403
           P     P  PPP   P     S   PPPPP   ++  +   P   PP  N        P 
Sbjct: 233 P--PQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQ 290

Query: 404 PPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMA 459
             +      PPP +         P    R    P+         +       Q  A
Sbjct: 291 GQN---APLPPPQQPQLLPLVQQPQGQQR---GPQFREQLVQLSQQQREALSQEEA 340

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 27/146 (18%), Positives = 41/146 (28%), Gaps = 15/146 (10%)

Query: 363 FHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPS 422
           F    +     P  K++P     P         P+        +       P    ++P+
Sbjct: 364 FKPAAAAEAAAPAEKKTP---ARPEAAA-----PAAAPVAQAAAAPAPAAAPAAAASAPA 415

Query: 423 THYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPP 482
              A  PP         +P   P       P    +AP PP   + E  A        P 
Sbjct: 416 APPAAAPPAPVAAPAAAAPAAAPA----AAPAAVALAPAPPAQAAPETVAIPVRVAPEPA 471

Query: 483 PPARDENPVAPATPGAPVEYYPPKKG 508
             +      APA   A     P ++G
Sbjct: 472 VASA---APAPAAAPAAARLTPTEEG 494

Length = 618

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 40/229 (17%), Positives = 54/229 (23%), Gaps = 28/229 (12%)

Query: 285 GGSPAPA--TSPRSSPPSSSSPPPPKRKPPVVKPVPAPR-------PANSPGPFIRPSPP 335
           GGS  PA  T P   P + S     K K  V +     +           P    +   P
Sbjct: 83  GGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRP 142

Query: 336 PPP----TSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPV 391
           P        K     R             KS   P  PP   P +K+             
Sbjct: 143 PKEKEKEKEKKVEEPRDREEEKKRERVRAKS--RPKKPPKKKPPNKKKEPPEEEKQRQ-- 198

Query: 392 YNVSPSPKHFPPPPSH---------YHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPP 442
                + K  P  P                   T               R      + P 
Sbjct: 199 -AAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPD 257

Query: 443 PPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPV 491
           P P +   P   +        P  S   P+    +  P PP  + +  V
Sbjct: 258 PSPSMA-SPETRESSKRTETRPRTSLRPPSARPASARPAPPRVKRKEIV 305

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 33/142 (23%), Positives = 43/142 (30%), Gaps = 1/142 (0%)

Query: 304 PPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSF 363
           P  P+R      PV A      PG   R  P     S+++   +S    P   +      
Sbjct: 777 PAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPA 836

Query: 364 HSPPSPPPPPPTHKESPRTHLP-PTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPS 422
             P +   PPP          P          +   +  PP P        PP   A+  
Sbjct: 837 RPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAP 896

Query: 423 THYAPPPPPRFYYVPKQSPPPP 444
              AP P PR     K  P PP
Sbjct: 897 PAGAPAPRPRPAPRVKLGPMPP 918

Length = 1352

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 27/137 (19%), Positives = 38/137 (27%), Gaps = 13/137 (9%)

Query: 437 PKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATP 496
           P  +     P E   P           P  +    A +  A +  P  A    P AP   
Sbjct: 366 PAAAAEAAAPAEKKTP----ARPEAAAPAAAPVAQAAAAPAPAAAPAAAASA-PAAPPAA 420

Query: 497 GAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPP---SWHHQTPPSPNYHSY 553
             P     P    P  AP        P+   + P       P   +   +  P P   S 
Sbjct: 421 APPAPVAAPAAAAPAAAPA-----AAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASA 475

Query: 554 AVPPPPSPSPPTPPPSP 570
           A  P  +P+     P+ 
Sbjct: 476 APAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 47.5 bits (113), Expect = 2e-05
 Identities = 34/195 (17%), Positives = 52/195 (26%), Gaps = 24/195 (12%)

Query: 287 SPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPST 346
           +P P  + R+S P    P     +           P       +  + P  P  +  P  
Sbjct: 96  APPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEP 155

Query: 347 RSHPTPPPP--------ANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSP 398
            + P                P   + SP S  P     +E      P       +     
Sbjct: 156 GAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPR 215

Query: 399 KHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHM 458
             +  P     +                P PPP   +V +  P PP   +  P    +  
Sbjct: 216 PDWDRPRRDRTDR---------------PEPPPGAGHVHRGGPGPPERDD-APVVPIRPS 259

Query: 459 APPPPPGESAEVPAP 473
           AP P   + A  P P
Sbjct: 260 APGPLAAQPAPAPGP 274

Length = 617

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 12/90 (13%)

Query: 277 GGSGGSGWGGSPAPATSPRSSPPS-SSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPP 335
           GG   S  G       +P    P     P P K + P  +P   P PA++P P       
Sbjct: 378 GGVAPSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTP------- 430

Query: 336 PPPTSKSSPSTRSHPTPPPPANSPPKSFHS 365
                +  P  RS P PP P  S P++  S
Sbjct: 431 ----EQQPPVARSAPLPPSPQASAPRNVAS 456

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 47.6 bits (114), Expect = 2e-05
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 1/79 (1%)

Query: 285 GGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSP-PPPPTSKSS 343
           G + AP  +  ++  ++S+P           P PAP  A +P    +P+       + ++
Sbjct: 39  GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA 98

Query: 344 PSTRSHPTPPPPANSPPKS 362
           P   +    P  A    + 
Sbjct: 99  PPAAAAAAAPAAAAVEDEV 117

Length = 1228

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 287 SPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPS----------PPP 336
           +P  A +P ++ P  ++ P    +P      PAP                         P
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 337 PPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTH 376
              + ++P+ R+         +   +  + P P  P    
Sbjct: 112 EAQAPAAPAERAAAENAARRLARAAA--AAPRPRVPADAA 149

Length = 484

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 27/136 (19%), Positives = 38/136 (27%), Gaps = 11/136 (8%)

Query: 251 TAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRK 310
            A A       AA PA               +    + A A +P ++P  + +P P    
Sbjct: 392 GAPAAAAPSAAAAAPA----------AAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAP 441

Query: 311 PPVVKPVPAPR-PANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSP 369
           P      PA   P+  P       P P P +   P+    P PP                
Sbjct: 442 PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501

Query: 370 PPPPPTHKESPRTHLP 385
            P       + R   P
Sbjct: 502 APAGADDAATLRERWP 517

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.9 bits (112), Expect = 3e-05
 Identities = 17/98 (17%), Positives = 18/98 (18%)

Query: 426 APPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPA 485
           A  P            P          P       P P    A  P            P+
Sbjct: 396 AAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPS 455

Query: 486 RDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPP 523
                   A P       P     P PAP    A    
Sbjct: 456 PPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493

Length = 824

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 17/136 (12%)

Query: 331 RPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPP 390
             +P      +++  +  H   PP A++ P+     P     PP H   P     P P P
Sbjct: 72  NHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRP---AQPAPQP 128

Query: 391 VYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYY 450
           V   +  P+   P                 P +    P P   +  P+ +     P E  
Sbjct: 129 VQQPAYQPQPEQPL--------------QQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPV 174

Query: 451 PPPYQQHMAPPPPPGE 466
             P  + +A P P  +
Sbjct: 175 AAPQPEPVAEPAPVMD 190

Length = 333

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.8 bits (112), Expect = 3e-05
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 9/91 (9%)

Query: 287 SPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPST 346
            P    +P ++  ++++        P  K   AP PA        P     P +   P+ 
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPA--------PPAAAAPAAPPKPAA 88

Query: 347 RSHPTPPPPANSPPKSFHSPPSPPPPPPTHK 377
            +     P A     +  + P+         
Sbjct: 89  AAAAAAAPAAPPAAAA-AAAPAAAAVEDEVT 118

Length = 1228

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 30/133 (22%), Positives = 45/133 (33%), Gaps = 9/133 (6%)

Query: 321 RPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESP 380
           R     G    P+   P  + ++P+      P P A +P        + P P    + +P
Sbjct: 383 RRLGVAGGAGAPAAAAPSAAAAAPA----AAPAPAAAAPA-----AAAAPAPAAAPQPAP 433

Query: 381 RTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQS 440
                P PP     +P+     PPP+   +  P P   A+P    AP P P     P  +
Sbjct: 434 APAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA 493

Query: 441 PPPPPPVEYYPPP 453
           P  P         
Sbjct: 494 PAAPAAPAAPAGA 506

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 27/147 (18%), Positives = 37/147 (25%), Gaps = 24/147 (16%)

Query: 342 SSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHF 401
           +  +       P  A + P       +P P       +        P P           
Sbjct: 388 AGGAGAPAAAAPSAAAAAP-----AAAPAPAAAAPAAAAAPAPAAAPQPA---------- 432

Query: 402 PPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPP 461
           P P       P PP+   +     AP PPP      + +P P    E    P     A P
Sbjct: 433 PAPAP----APAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAP 488

Query: 462 PPPGESAEVPAPSYFAYSPPPPPARDE 488
            P       PA      + P       
Sbjct: 489 APAAA-PAAPAAP----AAPAGADDAA 510

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 340 SKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPK 399
           S+S  ++ +  TPPPP  SPP    +PP P P       +P    PP PP     S +  
Sbjct: 512 SQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTP----PPPPPTATQASSNAP 567

Query: 400 HFPPPPSHYHNTPPPPTKKASPSTH 424
              P  S      P     +     
Sbjct: 568 AQIPADSSPPPPIPEEPTPSPTKDS 592

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.1 bits (110), Expect = 4e-05
 Identities = 21/83 (25%), Positives = 24/83 (28%), Gaps = 4/83 (4%)

Query: 340 SKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPK 399
              S S  +    PPP    P      P  P P  T         PP PPP    + S  
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTAT----APPPTPPPPPPTATQASSNA 566

Query: 400 HFPPPPSHYHNTPPPPTKKASPS 422
               P       P P     SP+
Sbjct: 567 PAQIPADSSPPPPIPEEPTPSPT 589

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.4 bits (111), Expect = 4e-05
 Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 2/76 (2%)

Query: 316 PVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPT 375
              AP  A +       +P   P +K+  +    P       +PPK   +  +     P 
Sbjct: 40  STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKP--AAAAAAAAAPA 97

Query: 376 HKESPRTHLPPTPPPV 391
              +      P    V
Sbjct: 98  APPAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 26/107 (24%), Positives = 30/107 (28%), Gaps = 16/107 (14%)

Query: 411 TPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEV 470
            P P  + A P+     P  P     P  S  P        PP +       PP      
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPT----PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRP 416

Query: 471 PAPSYFAYSPPPPPARDENPVAPATPGA--PVEYYPPKKGNPPPAPE 515
            AP       P  P       AP    A  PV+  P      PP  E
Sbjct: 417 VAP-----PVPHTP-----ESAPKLTRAAIPVDEKPKYTPPAPPKEE 453

Length = 585

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 34/128 (26%), Positives = 43/128 (33%), Gaps = 6/128 (4%)

Query: 382 THLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSP 441
            H P          PSP+H   PP  Y +  P    +  P     P   PR      Q  
Sbjct: 72  NHAPANAQEHEAARPSPQHQYQPP--YASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 442 PPPPPVEYYPPPYQQHMAP--PPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAP 499
             P        P QQ ++P   P P      P P+  A+ P  P A  +    P    AP
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQ--PEPVAEPAP 187

Query: 500 VEYYPPKK 507
           V   P +K
Sbjct: 188 VMDKPKRK 195

Length = 333

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 46.2 bits (109), Expect = 5e-05
 Identities = 60/271 (22%), Positives = 90/271 (33%), Gaps = 22/271 (8%)

Query: 322 PANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPR 381
           P++   P  + +PP P      PS    P+       P +  H     P  P +H+E PR
Sbjct: 666 PSSRRQPATQSTPPRP---SWLPSVFVLPSVDAGRAQPSEESHLSSMSPTQPISHEEQPR 722

Query: 382 THLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSP 441
              P  P  +              S + +  PPP+ +A  S H  P      Y    +  
Sbjct: 723 YEDPDDPLDL--------------SLHPDQAPPPSHQAPYSGHEEPQAQQAPYPGYWEPR 768

Query: 442 PPPPPVEYYPPPYQQHMAPPPPPGESAEVPA-PSYFAYSPPPPP-ARDENPVAPATPGAP 499
           PP  P   Y  P  Q +     PG +        +  Y       ++      P  P AP
Sbjct: 769 PPQAPYLGYQEPQAQGVQVSSYPGYAGPWGLRAQHPRYRHSWAYWSQYPGHGHPQGPWAP 828

Query: 500 VEYYPPKKGNPPPAPEYYHASP-PPSGCDIIPPSHHHN--PPSWHHQTPPSPNYHSYAVP 556
              + P + +          S  P    +  PP    +  P   + QT  S +  S++ P
Sbjct: 829 RPPHLPPQWDGSAGHGQDQVSQFPHLQSETGPPRLQLSQVPQLPYSQTLVSSSAPSWSSP 888

Query: 557 PPPSPSPPTPPPSPYDNTPLPPIIGVSYASP 587
            P +P  P P   P    PL   + V   S 
Sbjct: 889 QPRAPIRPIPTRFPPPPMPLQDSMAVGCDSS 919

Length = 1000

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFT 220
            NL   D+S N +   LP  + N+ +LE L+++ N+ T
Sbjct: 1   TNLETLDLSNNQIT-DLPP-LSNLPNLETLDLSGNKIT 36

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 30/134 (22%), Positives = 37/134 (27%), Gaps = 6/134 (4%)

Query: 381 RTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQS 440
           R H     P     + + +H    PS  H    PP   A P      PP  +        
Sbjct: 67  RVHRVNHAP-----ANAQEHEAARPSPQHQ-YQPPYASAQPRQPVQQPPEAQVPPQHAPR 120

Query: 441 PPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPV 500
           P  P P     P YQ     P     S +V       +S P P  +   P  P     P 
Sbjct: 121 PAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPE 180

Query: 501 EYYPPKKGNPPPAP 514
               P      P  
Sbjct: 181 PVAEPAPVMDKPKR 194

Length = 333

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 45.7 bits (109), Expect = 7e-05
 Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 3/75 (4%)

Query: 331 RPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPP 390
            P     PT+ ++ +  +   P     +   +  +P  P    P     P         P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 391 VYNVSPSPKHFPPPP 405
               +P        P
Sbjct: 97  ---AAPPAAAAAAAP 108

Length = 1228

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 29/136 (21%), Positives = 45/136 (33%), Gaps = 9/136 (6%)

Query: 459 APPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYH 518
             P PP +  +  A      S    P  D +P + +    P            P+P    
Sbjct: 148 PNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGV---PSFPSPPEDP 204

Query: 519 ASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPP 578
           +SP  S     P S   + P    ++P +P+      PPP   +PP PP           
Sbjct: 205 SSPSDSSLPPAPSSFQSDTPPPSPESPTNPS------PPPGPAAPPPPPVQQVPPLSTAK 258

Query: 579 IIGVSYASPPPPVIPY 594
               S ++ P P+   
Sbjct: 259 PTPPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 30/116 (25%), Positives = 37/116 (31%), Gaps = 24/116 (20%)

Query: 333 SPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVY 392
             P P  +K + +  S P  P PA          PS  P              P   PV 
Sbjct: 362 PVPAPQPAKPTAAAPS-PVRPTPA----------PSTRPKAAAAAN------IPPKEPV- 403

Query: 393 NVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVE 448
                    PP P      P P T +++P    A  P       PK +PP PP  E
Sbjct: 404 ---RETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDE---KPKYTPPAPPKEE 453

Length = 585

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.2 bits (108), Expect = 8e-05
 Identities = 31/173 (17%), Positives = 41/173 (23%), Gaps = 24/173 (13%)

Query: 365 SPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTH 424
            P  PP        +  T  P            P      P      P  P  + +    
Sbjct: 367 EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQ---QAPAVPLPETTSQLL 423

Query: 425 YAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESA--EVPAPSYFAYSPPP 482
            A     R      Q        E  P       A    P  SA   + +      +   
Sbjct: 424 AARQQLQR-----AQGATKAKKSE--PAA-----ASRARPVNSALERLASVRPAPSALEK 471

Query: 483 PPARDENPVAPATPGAPVEYYP---PKKGNPPPAPEYYHASPPPSGCDIIPPS 532
            PA+ E     AT    V+  P   PK      A E  H   P     +   +
Sbjct: 472 APAKKEAYRWKATNPVEVKKEPVATPKA--LKKALE--HEKTPELAAKLAAEA 520

Length = 647

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 45.7 bits (109), Expect = 8e-05
 Identities = 14/79 (17%), Positives = 26/79 (32%)

Query: 281 GSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTS 340
           G G   +P  A +  ++  S+ +  P  + P    P P    A +  P    +       
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 341 KSSPSTRSHPTPPPPANSP 359
            + P+  +   P   A   
Sbjct: 97  AAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.1 bits (107), Expect = 9e-05
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 285 GGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSP 344
           G    P+ +  +  P++ + PPP   PPV    PA   A       RP+P P P + ++P
Sbjct: 380 GAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAA------RPAPAPAPPAAAAP 433

Query: 345 STRSHPTPPPPA 356
             RS       +
Sbjct: 434 PARSADPAAAAS 445

Length = 576

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 45.1 bits (106), Expect = 1e-04
 Identities = 50/274 (18%), Positives = 72/274 (26%), Gaps = 50/274 (18%)

Query: 335 PPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNV 394
           P    + ++ +T+S   P  P    P        P  P    +  P      T  PV  +
Sbjct: 319 PVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQ---TGEPV--I 373

Query: 395 SPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPY 454
           +P+P+ +P                      YA P     Y  P Q P  P    Y P   
Sbjct: 374 APAPEGYPQQS------------------QYAQPAVQ--YNEPLQQPVQPQQPYYAPAAE 413

Query: 455 QQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAP 514
           Q    P   P        P Y      P            +  AP   Y  ++    PA 
Sbjct: 414 QPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAA 473

Query: 515 EYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPS--PNYHSYAV----------------- 555
           +      P      +       P     +T P+  P Y+   V                 
Sbjct: 474 QEPLYQQPQP----VEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQP 529

Query: 556 --PPPPSPSPPTPPPSPYDNTPLPPIIGVSYASP 587
              P   P P            +PP+   +  SP
Sbjct: 530 IPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSP 563

Length = 1355

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 25/133 (18%), Positives = 34/133 (25%), Gaps = 12/133 (9%)

Query: 245 GEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSP 304
               +  A      R  AA PA     Q         +    + APA  P ++PP+  + 
Sbjct: 369 AAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAA 428

Query: 305 PPPKRKPPVVKPVPAPRPANSPGPFIRPSPP--PPPTSKSSPSTRSHPTPPPPANSPPKS 362
           P            PA        P          P      P+  S    P  A      
Sbjct: 429 PAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAA------ 482

Query: 363 FHSPPSPPPPPPT 375
               P+     PT
Sbjct: 483 ----PAAARLTPT 491

Length = 618

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 30/140 (21%), Positives = 41/140 (29%), Gaps = 16/140 (11%)

Query: 317 VPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPP--- 373
           V     A +       +  P P  +  P   +   P  P   PP++   P   P P    
Sbjct: 68  VHRVNHAPAN-AQEHEAARPSPQHQYQPP-YASAQPRQPVQQPPEAQVPPQHAPRPAQPA 125

Query: 374 PTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRF 433
           P   + P     P  P      P      P P   H+ P P  +   P+   A P P   
Sbjct: 126 PQPVQQPAYQPQPEQPL---QQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQP--- 179

Query: 434 YYVPKQSPPPPPPVEYYPPP 453
                +    P PV   P  
Sbjct: 180 -----EPVAEPAPVMDKPKR 194

Length = 333

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 24/92 (26%), Positives = 31/92 (33%), Gaps = 11/92 (11%)

Query: 332 PSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPV 391
            +     T      +   P P PP   P  +   P  PPPPP   + S     P   P  
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNA--PAQIPAD 573

Query: 392 YNVSPSPKHFPPPPSHYHNTPPPPTKKASPST 423
            +  P     P  P+      P PTK +SP  
Sbjct: 574 SSPPPPI---PEEPT------PSPTKDSSPEE 596

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 25/94 (26%), Positives = 32/94 (34%), Gaps = 9/94 (9%)

Query: 300 SSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSP 359
           S S+    K  PP  K  P P P           P P PT+ + P T   P P     S 
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAP---------TPPLPQPTATAPPPTPPPPPPTATQASS 564

Query: 360 PKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYN 393
                 P    PPPP  +E   +    + P   +
Sbjct: 565 NAPAQIPADSSPPPPIPEEPTPSPTKDSSPEEID 598

Length = 620

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 300 SSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTP-PPPANS 358
           S    P    KP   +P  AP+P+ +       +  P P+  S+ +  S P     PA +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAA------AAASPSPSQSSAAAQPSAPQSATQPAGT 423

Query: 359 PPKSFHSPPSPPPPPPTHKESPRTHLPPTPPP 390
           PP     PP+  P  P                
Sbjct: 424 PPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEE 455

Length = 614

>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor

 Score = 44.7 bits (105), Expect = 1e-04
 Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 260 MMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPA 319
           + A  P   +    G    S  +    SP+   +P +SPP+     PP     +V P  +
Sbjct: 561 LFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTS 620

Query: 320 PRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANS 358
           P PA+  G     SP   P+S  S    +      P +S
Sbjct: 621 P-PASHLG-----SPSTTPSSPESSIKVASTETASPESS 653

Length = 670

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 24/94 (25%), Positives = 32/94 (34%)

Query: 371 PPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPP 430
           P   T+  +  T++PP PP        PK F     H H   P PT++ +       P  
Sbjct: 159 PAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTV 218

Query: 431 PRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPP 464
                 P+Q P   P      P  Q     PP  
Sbjct: 219 QNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQT 252

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 40/173 (23%), Positives = 51/173 (29%), Gaps = 6/173 (3%)

Query: 426 APPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPP--- 482
            P P       P       PP E   P      A P  P  +    AP+  + +P P   
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA 648

Query: 483 PPARDENPVAPATPGAPVEYYPPKKGNPPPA-PEYYHASPPPSGCDIIPPSHHHNPPSWH 541
            P      VA        + +P K G   PA P    A   P+      P+     P+  
Sbjct: 649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAA- 707

Query: 542 HQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPPVIPY 594
              P        A PP  +     P P+  D  PLPP           P  P 
Sbjct: 708 -TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPP 759

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.7 bits (104), Expect = 2e-04
 Identities = 25/134 (18%), Positives = 38/134 (28%), Gaps = 12/134 (8%)

Query: 402 PPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPP 461
           P P     +  P  + +A+ +   A  PP      P  +  P        P     +   
Sbjct: 366 PEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAA 425

Query: 462 PPPGESAEVPAPSYFAYSPPPPPARDEN----------PVAPATPGAPV--EYYPPKKGN 509
               + A+    +  +       AR  N          P   A   AP   E Y  K  N
Sbjct: 426 RQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATN 485

Query: 510 PPPAPEYYHASPPP 523
           P    +   A+P  
Sbjct: 486 PVEVKKEPVATPKA 499

Length = 647

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 12/100 (12%)

Query: 285 GGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSP 344
           G  P     P  + P+++  P             +P P+ S       +P        +P
Sbjct: 372 GRGPKQHIKPVFTQPAAAPQPS-------AAAAASPSPSQSSAAAQPSAPQSATQPAGTP 424

Query: 345 STRSHPTP-----PPPANSPPKSFHSPPSPPPPPPTHKES 379
            T S   P      PP+ +P     +        P  K S
Sbjct: 425 PTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVS 464

Length = 614

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 20/187 (10%), Positives = 35/187 (18%), Gaps = 3/187 (1%)

Query: 298 PPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPAN 357
            P      P +         P      +          P  ++  + S       PP   
Sbjct: 1   GPGKPRGQPGRWNYDSSDESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRET 60

Query: 358 SPPKSFHSPPSPPPPPPTHKESPRTHL-PPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPT 416
                     S     P     P   L  P   P     P      PP      + P   
Sbjct: 61  GSGGG--VATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSPRLG 118

Query: 417 KKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYF 476
             ++          P       +S      +       +   +         +V    + 
Sbjct: 119 ADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFS 178

Query: 477 AYSPPPP 483
            +     
Sbjct: 179 KHKTHKR 185

Length = 580

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 44.3 bits (104), Expect = 2e-04
 Identities = 48/231 (20%), Positives = 72/231 (31%), Gaps = 16/231 (6%)

Query: 288 PAPATSPRSSPPSSSSPPP----PKRKPPVVKPVPAPRPANSPGPF---IRPSPPPPPTS 340
           P P  S    PP++ S  P    P++ P  ++P+P       P  F   + P+P  PP  
Sbjct: 598 PVPHPSQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQV 657

Query: 341 KSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKE----SPRTHLPPTPPPVYNVSP 396
           + +P   +          P  +  +   P    P   +    +P    PP  PP     P
Sbjct: 658 EITPYKPTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRP 717

Query: 397 SPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQ 456
           +       P         P +   P+       PP       + P   P     P     
Sbjct: 718 AAATGRARPPA-----AAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPG 772

Query: 457 HMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKK 507
              P PPP            A +P PPP      +      AP +  P K+
Sbjct: 773 APTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQ 823

Length = 991

>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 38/194 (19%), Positives = 54/194 (27%), Gaps = 14/194 (7%)

Query: 264 RPADCSKMQCGRGGGSGGSGWGGSP-APATSPRSSPPSSSSPPPPKRKP-PVVKPVPAPR 321
           R +  SK+Q  R   S       +P +   +P SSP SS    PP   P   V       
Sbjct: 366 RDSQSSKIQQIRDSISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGT 425

Query: 322 PANSPGPF---------IRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPP 372
           P +              I+P+    P  K S  +    +   P +S       P      
Sbjct: 426 PGSKSDRVGAVLLRRMNIKPTLASIPDEKPSNISVFEDSETSPNSSTLLRDPPPKKCGEE 485

Query: 373 PPTHKESPR-THLPPTPPPVYNVSPSPKHFPPPP--SHYHNTPPPPTKKASPSTHYAPPP 429
                 +P    L  T   +  +SP       P              +  S S     PP
Sbjct: 486 SGHLPNNPFFNKLKLTLSSIPPLSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSPP 545

Query: 430 PPRFYYVPKQSPPP 443
           P       K +   
Sbjct: 546 PYPTLVSRKGAAGL 559

The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase. Length = 626

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 25/124 (20%), Positives = 34/124 (27%), Gaps = 12/124 (9%)

Query: 293 SPRSSPPSSSSP-PPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPT 351
            PR       SP      +PP     P  +    P  + R S  P P     P   +   
Sbjct: 379 QPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPLRPNGLA 438

Query: 352 PPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNT 411
           P     +P ++  +    PP  P              PP Y   P  +  P P S     
Sbjct: 439 PMNAVRAPSRNAQNAAQKPPMQP-VMY----------PPNYQSLPLSQDLPQPQSTASQG 487

Query: 412 PPPP 415
               
Sbjct: 488 GQNK 491

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 30/180 (16%), Positives = 41/180 (22%), Gaps = 5/180 (2%)

Query: 414 PPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAP 473
           P            P         P             P       A        A   A 
Sbjct: 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAA 419

Query: 474 SYFAYSPP---PPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIP 530
           +  A +PP    PPA  +     A   APV      + +     +   A PP        
Sbjct: 420 ATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASA 479

Query: 531 PSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPP 590
           P+    P +     P +    +      P    P        + P         A PP P
Sbjct: 480 PASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRE--DAPAAAAPPAPEARPPTP 537

Length = 830

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 23/138 (16%), Positives = 34/138 (24%), Gaps = 1/138 (0%)

Query: 245 GEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSP 304
             P    AA    GR+  + PA  +  +      S      G    +   R    + + P
Sbjct: 787 SPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAA-ARP 845

Query: 305 PPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFH 364
           PP +          A           R   PP P ++   +         P    P    
Sbjct: 846 PPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRP 905

Query: 365 SPPSPPPPPPTHKESPRT 382
            P       P     P  
Sbjct: 906 RPAPRVKLGPMPPGGPDP 923

Length = 1352

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 21/106 (19%), Positives = 33/106 (31%), Gaps = 15/106 (14%)

Query: 310 KPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSP 369
                 P    +P      F +P+  P P++ ++ S      P P  +S       P +P
Sbjct: 369 ASGGRGPKQHIKPV-----FTQPAAAPQPSAAAAAS------PSPSQSSAAA---QPSAP 414

Query: 370 PPPPPTHKESP-RTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPP 414
                     P  +  PP   PV   S +P+   P         P 
Sbjct: 415 QSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPV 460

Length = 614

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 13/61 (21%), Positives = 21/61 (34%)

Query: 332 PSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPV 391
            +  P P   S  +  + P P   A    K+     + P      K+ PR    P P  +
Sbjct: 13  EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASL 72

Query: 392 Y 392
           +
Sbjct: 73  W 73

Length = 475

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 58/307 (18%), Positives = 79/307 (25%), Gaps = 19/307 (6%)

Query: 269 SKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGP 328
           SK+Q                     P +    +           V   +P      SP P
Sbjct: 25  SKLQLSHEEAQSSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQP 84

Query: 329 FIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTP 388
             +     PP+ +             P    P+     P P  P P   + P+   P  P
Sbjct: 85  DQQQQSQAPPSHQYPSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPP 144

Query: 389 PPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVE 448
           P V          PP    Y   PPP  + A   +   P   P         P   PP E
Sbjct: 145 PQV--PQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESP-------YQPQSYPPNE 195

Query: 449 YYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKG 508
             P                   P    F   P P P     P      G P    PP   
Sbjct: 196 PLPSSMAMQPPYSG-------APPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQ 248

Query: 509 NPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPP 568
                  Y ++ PPPS  +    + +    S    +   P+  +  V P   P    P  
Sbjct: 249 GQEG---YGYSGPPPSKGNHGSVASYAPQGSSQSYSTAYPSLPAATVLPQALPMSSAPMS 305

Query: 569 SPYDNTP 575
                +P
Sbjct: 306 GGGSGSP 312

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 13/74 (17%), Positives = 21/74 (28%)

Query: 275 RGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSP 334
           + G     G GG P        +P ++++P      P    P  A              P
Sbjct: 388 QEGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPP 447

Query: 335 PPPPTSKSSPSTRS 348
            P    + +    S
Sbjct: 448 APAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 11/100 (11%)

Query: 426 APPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPA 485
           AP PP   +  P  + P  PP    PP       P  P   +A  PAP+    +   PPA
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPV-----PPAAPARPAAARPAPAPAPPAAAAPPA 435

Query: 486 RDENPVAPATPG----APVEYYPPKKGNPPPAPEYYHASP 521
           R  +P A A+ G    A V +   K   P         SP
Sbjct: 436 RSADPAAAASAGDRWRAFVAFV--KGKKPALGASLEQGSP 473

Length = 576

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 16/81 (19%), Positives = 24/81 (29%)

Query: 323 ANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRT 382
           A         +P  P  + +     +   P  P      +  SPP     PP    +  T
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 383 HLPPTPPPVYNVSPSPKHFPP 403
              PTPP     +P   +   
Sbjct: 423 EPSPTPPANAANAPPSLNLEE 443

Length = 620

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 13/73 (17%), Positives = 18/73 (24%)

Query: 286 GSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPS 345
             P         PP     P             A   A  P   +   P     + + P+
Sbjct: 389 EGPPSPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPA 448

Query: 346 TRSHPTPPPPANS 358
             + P P    NS
Sbjct: 449 PAAAPQPAVRLNS 461

Length = 598

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)

Query: 100 FEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMG 158
           F  +  SKL  + L +I L+ N  +  IP +LG+ + + VL  + N   G IP S+G++ 
Sbjct: 433 FIPNDISKL--RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL- 489

Query: 159 KTLNEIILMNDN-LTGCLPPQIG 180
            T   I+ +N N L+G +P  +G
Sbjct: 490 -TSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 5/75 (6%)

Query: 316 PVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPT 375
              +     +P P   P P P   S       +    PPPA + P     P   P  P  
Sbjct: 369 ANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASP-----PIPVPAEPTE 423

Query: 376 HKESPRTHLPPTPPP 390
              +P  +    PP 
Sbjct: 424 PSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 42.8 bits (100), Expect = 6e-04
 Identities = 64/304 (21%), Positives = 88/304 (28%), Gaps = 27/304 (8%)

Query: 244 TGEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSP-PSSS 302
           +G PP       G               + G+ G +     G  P PA   + S  P+ S
Sbjct: 517 SGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLS 576

Query: 303 SPPPPKRKPPVVKPVPAPRPANSP----GPFIRPSPPPP-----PTSKSSPSTRSHPTPP 353
             P   + P   K    P+    P     P    SP  P     P S   P +   P  P
Sbjct: 577 KKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRP 636

Query: 354 PPANSP-----------PKSFHSPPSPPPP-PPTHKESPRTHLPPTPPPVYNVSPSPKHF 401
           PP   P            KS   P SP PP  P  KE                  +    
Sbjct: 637 PPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLD 696

Query: 402 PPPPSHYHNTPPPPTKKASPSTHYAPPPPPR---FYYVPKQSP--PPPPPVEYYPPPYQQ 456
               S    T P        +    PP  PR   F + P   P    P  +E++ PP ++
Sbjct: 697 ESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEE 756

Query: 457 HMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEY 516
                  P ++      +             E   A   P +P E+     G+ P  P+ 
Sbjct: 757 RTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKK 816

Query: 517 YHAS 520
            H  
Sbjct: 817 RHRL 820

Length = 943

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 42.8 bits (100), Expect = 6e-04
 Identities = 52/274 (18%), Positives = 71/274 (25%), Gaps = 20/274 (7%)

Query: 308 KRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPP 367
           K+  P+ +           GP     PP  P  K         +     +  PK    P 
Sbjct: 494 KKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSK---ESDEPKEGGKPG 550

Query: 368 SPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHN--TPPPPTKKASPSTHY 425
                    K  P     P+  P  +  P    FP  P H  +   P  P +  S     
Sbjct: 551 ETKEGEVGKKPGPAKEHKPSKIPTLSKKPE---FPKDPKHPKDPEEPKKPKRPRSAQRPT 607

Query: 426 APPPP--PRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPP 483
            P  P  P    +PK    P  P     PP  Q  + P  P E  ++        SP PP
Sbjct: 608 RPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERP-EGPKIIKSPKPPKSPKPP 666

Query: 484 --PARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWH 541
             P   E         A        K            S      + +P +      +  
Sbjct: 667 FDPKFKEKFYDDYLDAA-------AKSKETKTTVVLDESFESILKETLPETPGTPFTTPR 719

Query: 542 HQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTP 575
              P  P    +   P   P    P    +   P
Sbjct: 720 PLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPP 753

Length = 943

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 41.9 bits (98), Expect = 6e-04
 Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 6/109 (5%)

Query: 252 AAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKP 311
           +      R +++     S     R   +  S       P++SP  +  SSSS    K++P
Sbjct: 16  SPRSSSRRRLSSSFLSTSASSRPRRLNAPASP------PSSSPARNTSSSSSFGLSKQRP 69

Query: 312 PVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPP 360
             +          SP      +      S ++ ST    +P     +  
Sbjct: 70  SSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTS 118

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 52/232 (22%), Positives = 65/232 (28%), Gaps = 15/232 (6%)

Query: 344 PSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPP 403
           P+ R    PPPP  + P    S P+        +          P       P+    PP
Sbjct: 434 PAPRRDNDPPPPPRARP---GSTPACARRARAQRARDAGPEYVDPLGALRRLPAGAAPPP 490

Query: 404 PPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPP 463
            P+      P P    +      P  PPR        P   PP    P   +     P  
Sbjct: 491 EPA----AAPSPATYYTRMGGGPPRLPPRNRATETLRPDWGPPAAAPPEQMEDPYLEPDD 546

Query: 464 PGESAEVPAPSYFAYSPPPPPARDENPVAPATP--GAPVEYYPPKKG---NPPPAPEYYH 518
                   A +     P   PA D++P+         PV    P      NP P P    
Sbjct: 547 DRFDRRDGAAAAATSHPREAPAPDDDPIYEGVSDSEEPVYEEIPTPRVYQNPLPRPMEGA 606

Query: 519 ASPPPSGCDIIPPSHHHNPPSWHHQTP---PSPNYHSYAVPPPPSPSPPTPP 567
             PP       P     NP      +P   P P        P  SP PP  P
Sbjct: 607 GEPPDLDAPTSPWVEEENPIYGWGDSPLFSPPPAARFPPPDPALSPEPPALP 658

Length = 694

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 35/167 (20%), Positives = 46/167 (27%), Gaps = 30/167 (17%)

Query: 426 APPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPA 485
           A P       V + +P    P    P P     AP   P  +A   A +       P P 
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431

Query: 486 RDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTP 545
                   +  G      P       PA     A+ P +                     
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAA----AARPAA-------------------AG 468

Query: 546 PSPNYHSYAVPPPPSPSPPTPPPSPYDNTP---LPPIIGVSYASPPP 589
           P P   + A  P  +     P P+  D  P   LPP     +ASP P
Sbjct: 469 PRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPP----EFASPAP 511

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 24/137 (17%), Positives = 37/137 (27%), Gaps = 5/137 (3%)

Query: 245 GEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSP 304
           G P     AA        A  A  +         +           A  P + PP ++  
Sbjct: 668 GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG 727

Query: 305 --PPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKS 362
              P       V   P P     P       PPPP  + ++        PPP   S  + 
Sbjct: 728 ASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPA---AAPPPSPPSEEEE 784

Query: 363 FHSPPSPPPPPPTHKES 379
                +P       +++
Sbjct: 785 MAEDDAPSMDDEDRRDA 801

Length = 824

>gnl|CDD|216263 pfam01044, Vinculin, Vinculin family

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 25/84 (29%), Positives = 28/84 (33%), Gaps = 14/84 (16%)

Query: 317 VPAPRPANSPGPFIRPSPPPPPTSKSSPST--RSHPTPPPPANSPPKSFHSPPSPPPPPP 374
           V   R A      +  SPP  PT          + P PPPP  +       PP  PPPPP
Sbjct: 605 VRPIRQA----VLMNRSPPELPTDSEFEREDEPADPRPPPPVET------EPPPRPPPPP 654

Query: 375 THKESPRTHLPPT--PPPVYNVSP 396
                    LPP         V P
Sbjct: 655 ETDREEMRRLPPEEKAKIAAQVQP 678

Length = 850

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (99), Expect = 8e-04
 Identities = 24/135 (17%), Positives = 34/135 (25%), Gaps = 14/135 (10%)

Query: 463 PPGESAEVPAPSYFAYSPPPPPARDENPVA-PATPGAPVEYYPPKKGNPPPAPEYYHASP 521
           P   +           + P   A    PVA  A   AP    P    + P AP       
Sbjct: 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAA-APAAAASAPAAPPAAAPPA 424

Query: 522 PPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPP---TPPPSPYDNTPLPP 578
           P +     P +              +      A   P + + P    P P+     P P 
Sbjct: 425 PVAA----PAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPA 480

Query: 579 IIGVSYASPPPPVIP 593
                 A     + P
Sbjct: 481 A-----APAAARLTP 490

Length = 618

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 8e-04
 Identities = 45/252 (17%), Positives = 68/252 (26%), Gaps = 62/252 (24%)

Query: 367 PSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYA 426
           PS       +  +P     PTP P  +  P+P     P +    T P P    +      
Sbjct: 361 PSAFISEIANASAPA---NPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPV 417

Query: 427 PPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPP----------------GESAEV 470
           P  P      P  +    PP       +QQ +A    P                   A +
Sbjct: 418 PAEPTEPSPTPPANAANAPPSLNLEELWQQILAKLELPSTRMLLSQQAELVSLDSNRAVI 477

Query: 471 P-APSYF---------------------------AYSPPPPPARDENPVAPATPGAPVEY 502
             +P++                            + S          P    +P  P   
Sbjct: 478 AVSPNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQSGSASNTAKTPPPPQKSPPPPAP- 536

Query: 503 YPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPS 562
                   PP P+    +PPP+     P +   +  +       S        PPPP P 
Sbjct: 537 -------TPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS-------PPPPIPE 582

Query: 563 PPTPPPSPYDNT 574
            PTP P+   + 
Sbjct: 583 EPTPSPTKDSSP 594

Length = 620

>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein; Provisional

 Score = 41.9 bits (97), Expect = 8e-04
 Identities = 40/172 (23%), Positives = 62/172 (36%), Gaps = 18/172 (10%)

Query: 258 GRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPV 317
            R   A  A  +K +      +  SG   + A A +  ++ P+ ++ PP K      K  
Sbjct: 188 ARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAA 247

Query: 318 PAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHK 377
            AP  A +P     P+    P +K++        PP  A +PP    +PP+     P   
Sbjct: 248 AAPAKAAAP-----PAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKA 302

Query: 378 ESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPP 429
            +         P     +P+    PP          PP K A+P    A PP
Sbjct: 303 AA--------APAKAAAAPAKAAAPPA-----KAAAPPAKAATPPAKAAAPP 341

Length = 357

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 337 PPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSP 396
           P  + ++    + P P  P ++ P +  +P     P P              P   NV  
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAV---DPQQNAVVAPSQANVDT 219

Query: 397 SPKHFPPPPSHYHNTPPPPTKKASPST 423
           +    P  P+      P PT +A  ST
Sbjct: 220 AATPAPAAPATPDGAAPLPTDQAGVST 246

Length = 331

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.9 bits (99), Expect = 9e-04
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 293 SPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTP 352
           S   S  +++S P      P   P PAP   ++P      + P PP +K+SP     P P
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPI---PVP 418

Query: 353 PPPANSPPKSFHSPPSPPPPPPTHKE 378
             P    P    +  +  PP    +E
Sbjct: 419 AEPTEPSPTPP-ANAANAPPSLNLEE 443

Length = 620

>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional

 Score = 42.0 bits (98), Expect = 9e-04
 Identities = 82/369 (22%), Positives = 103/369 (27%), Gaps = 67/369 (18%)

Query: 279 SGGSGWGGSPAPATSPRSSPPSSSSPP---PPKRKPPVVKPVPAPRPANSPGPFIRPSPP 335
            G    G     AT P+ SP S   PP   PP   PP   P     P+  P     PS  
Sbjct: 538 DGFQRSGRRQKRATPPKVSP-SDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTG 596

Query: 336 P---PPTSKSSPSTRSHPTPPP---PANSPPKSFH---------SPPSPPP--------- 371
           P          P++  H   PP   P +  P                 P P         
Sbjct: 597 PRQQAKCKDGPPASGPHEKQPPSSAPRDMAPSVVRMFLRERLLEQSTGPKPKSFWEMRAG 656

Query: 372 --------PPPTHKESPRTHLPPTP---PPVYNVSPSPKHFPPPPSHYHNTPPPPTKKAS 420
                    P + ++      PP P   P V+ +         P    H +   PT+  S
Sbjct: 657 RDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAGRAQPSEESHLSSMSPTQPIS 716

Query: 421 PS---THYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFA 477
                 +  P  P      P Q+PPP         PY  H  P        + P P Y  
Sbjct: 717 HEEQPRYEDPDDPLDLSLHPDQAPPPSHQA-----PYSGHEEPQAQ-----QAPYPGY-- 764

Query: 478 YSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEY--------YHASPPPSGCDII 529
           + P PP A       P   G  V  YP   G      ++        Y +  P  G    
Sbjct: 765 WEPRPPQAPYLGYQEPQAQGVQVSSYPGYAGPWGLRAQHPRYRHSWAYWSQYPGHGHPQG 824

Query: 530 P--PSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASP 587
           P  P   H PP W        +  S          PP    S     P    +  S A  
Sbjct: 825 PWAPRPPHLPPQWDGSAGHGQDQVSQFPHLQSETGPPRLQLSQVPQLPYSQTLVSSSAPS 884

Query: 588 ---PPPVIP 593
              P P  P
Sbjct: 885 WSSPQPRAP 893

Length = 1000

>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional

 Score = 42.1 bits (99), Expect = 9e-04
 Identities = 29/159 (18%), Positives = 41/159 (25%), Gaps = 14/159 (8%)

Query: 285 GGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSP 344
           G     ATS   + P     P      P   P     P   PGP   P       S S  
Sbjct: 61  GSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELP---PGPTPVPPGGFRGAS-SPR 116

Query: 345 STRSHPTPPPPANSPPKSFHSP---PSPPPPPPTHKESPRTHLPPTPPPVYN-VSPSPKH 400
                 +P            +P    +      + +E      P     V N     PK 
Sbjct: 117 LGADSTSPRFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKG 176

Query: 401 FPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQ 439
           F    +H        ++ +  +   A      F + P Q
Sbjct: 177 FSKHKTH------KRSEFSGLTKKAARKRKGSFVFKPSQ 209

Length = 580

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 29/120 (24%), Positives = 33/120 (27%), Gaps = 17/120 (14%)

Query: 385 PPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPP 444
            P         PS     P  +      P     A+ +       P      P  +P P 
Sbjct: 393 APAAAA-----PSAAAAAPAAAP----APAAAAPAAAAAPAPAAAPQ---PAPAPAPAPA 440

Query: 445 PPV-----EYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAP 499
           PP           P     A P      A   AP   A   P PPA      APA P AP
Sbjct: 441 PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAP 500

Length = 824

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 28/132 (21%), Positives = 34/132 (25%), Gaps = 11/132 (8%)

Query: 440 SPPPPPPVEYYPPPYQQHMAPPP-PPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGA 498
             P          P  QH   PP    +  +       A  PP    R   P  PA    
Sbjct: 73  HAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPR---PAQPAPQPV 129

Query: 499 PVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPP 558
               Y P+   P   P     +P P       P H    P+     P  P        P 
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAPAP------QPVHSAPQPAQQAFQPAEPVAAP-QPEPV 182

Query: 559 PSPSPPTPPPSP 570
             P+P    P  
Sbjct: 183 AEPAPVMDKPKR 194

Length = 333

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.8 bits (99), Expect = 0.001
 Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 24/97 (24%)

Query: 335 PPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNV 394
           P    + ++ +  +      PA +P     + P+P PP             P  PP    
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAA---------APAAPP---- 84

Query: 395 SPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPP 431
            P+                P    A+ +   A  P  
Sbjct: 85  KPAAA--AAAA------AAPAAPPAAAA---AAAPAA 110

Length = 1228

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 12/104 (11%), Positives = 19/104 (18%)

Query: 302 SSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPK 361
           + P           P  AP   + P        P         + +        A     
Sbjct: 52  APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQLVARAAAPAAP 111

Query: 362 SFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPP 405
              +P +P         + R        P   V           
Sbjct: 112 EAQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 325 SPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHL 384
           +P P       P P + ++P   + P  PP A + P +  + P+P P PP     P    
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAA--ARPAPAPAPPAAAAPPARSA 438

Query: 385 PPTPPP 390
            P    
Sbjct: 439 DPAAAA 444

Length = 576

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 9/97 (9%)

Query: 409 HNTPPPPTKKASPS-THYAPPPPPRFYYVPKQSPP----PPPPVEYYPPPYQQHMAPPP- 462
            +    P +   P  T  A  P P        SP        P        Q    PP  
Sbjct: 369 ASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPS-APQSATQPAGTPPTV 427

Query: 463 --PPGESAEVPAPSYFAYSPPPPPARDENPVAPATPG 497
              P  +  V  PS    +  P   ++E  +  +   
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVS 464

Length = 614

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 70/289 (24%), Positives = 85/289 (29%), Gaps = 49/289 (16%)

Query: 290 PATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSH 349
           P TSP +S  +SS+P   +       P P P P+ +P P    S  P  ++         
Sbjct: 576 PLTSPTTSQLASSAPSYAQT------PWPVPHPSQTPEPPTTQSHIPETSAPRQWPMPLR 629

Query: 350 PTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYH 409
           P P  P    P +F+    P P  P   E        T        PSP           
Sbjct: 630 PIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTG--------A 681

Query: 410 NTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAE 469
           NT  P   + +P T   PP  P         PP  PP     P          PP  +  
Sbjct: 682 NTMLPI--QWAPGTMQPPPRAP-----TPMRPPAAPPGRAQRP--AAATGRARPPAAAPG 732

Query: 470 VPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDII 529
              P   A     PPA       P    AP    PP      P P+     PPP      
Sbjct: 733 RARPPAAAPGRARPPAAAPGRARPPA-AAPGRARPPAAAPGAPTPQ-----PPP------ 780

Query: 530 PPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPP 578
                        Q PP+P        P P P P   P S        P
Sbjct: 781 -------------QAPPAPQQRPRGA-PTPQPPPQAGPTSMQLMPRAAP 815

Length = 991

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 36/160 (22%), Positives = 49/160 (30%), Gaps = 17/160 (10%)

Query: 282 SGWGGSPAPATSPRSSPPSSSSPP---PPKRKPPVVKPVPAPRPANSPGPFIRP------ 332
             W         P  +  ++  P    P   +PP   P P   PA  PG   RP      
Sbjct: 664 PTWTQIGHIPYQPSPTGANTMLPIQWAPGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGR 723

Query: 333 SPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSP---PSPPPPPPTHKESPRTHLPPTPP 389
           + PP      +    + P    P  + P     P   P    PP     +P    PP  P
Sbjct: 724 ARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAP 783

Query: 390 PVYNVSP--SPKHFPPP---PSHYHNTPPPPTKKASPSTH 424
           P     P  +P   PPP   P+     P     +  P+  
Sbjct: 784 PAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQ 823

Length = 991

>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566)

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 28/125 (22%), Positives = 36/125 (28%), Gaps = 16/125 (12%)

Query: 279 SGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPP 338
           SG +    S   ++S R    S  S     R          PR  N+P      S P   
Sbjct: 7   SGSTSGDASSPRSSSRRRLSSSFLSTSASSR----------PRRLNAPA-SPPSSSPARN 55

Query: 339 TSKSSPSTRSHPTPPPPANSP-PKSFHSP----PSPPPPPPTHKESPRTHLPPTPPPVYN 393
           TS SS    S   P   +       F SP    PS          +  T    +P     
Sbjct: 56  TSSSSSFGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRR 115

Query: 394 VSPSP 398
            + S 
Sbjct: 116 TTSSD 120

Family of related proteins that is plant specific. Length = 313

>gnl|CDD|223041 PHA03321, PHA03321, tegument protein VP11/12; Provisional

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 58/245 (23%), Positives = 72/245 (29%), Gaps = 19/245 (7%)

Query: 338 PTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPP----PPTHKESPRTHLPPTPPPVYN 393
           P+     S R   +  PP    P+  + PP PP       P      R        P Y 
Sbjct: 414 PSEHYEASLRLLSSRQPPGAPAPRRDNDPPPPPRARPGSTPACARRARAQRARDAGPEYV 473

Query: 394 VSPSPKHFPPPPSHYHNTPPPPTKKASPSTHY------APPPPPRFYYVPKQSPPPPPPV 447
                    P  +     PP P    SP+T+Y       P  PPR        P   PP 
Sbjct: 474 DPLGALRRLPAGA---APPPEPAAAPSPATYYTRMGGGPPRLPPRNRATETLRPDWGPPA 530

Query: 448 EYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATP--GAPVEYYPP 505
              P   +     P          A +     P   PA D++P+         PV    P
Sbjct: 531 AAPPEQMEDPYLEPDDDRFDRRDGAAAAATSHPREAPAPDDDPIYEGVSDSEEPVYEEIP 590

Query: 506 KKG---NPPPAPEYYHASPPPSGCDIIPPSHHHNP-PSWHHQTPPSPNYHSYAVPPPPSP 561
                 NP P P      PP       P     NP   W      SP   +   PP P+ 
Sbjct: 591 TPRVYQNPLPRPMEGAGEPPDLDAPTSPWVEEENPIYGWGDSPLFSPPPAARFPPPDPAL 650

Query: 562 SPPTP 566
           SP  P
Sbjct: 651 SPEPP 655

Length = 694

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 24/142 (16%), Positives = 35/142 (24%), Gaps = 4/142 (2%)

Query: 437 PKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATP 496
              SP  PPPV   P P  Q   P              +   +  P          PA P
Sbjct: 49  WDPSPQAPPPVAQLPQPLPQPP-PTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGP 107

Query: 497 GAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVP 556
             P     P +  P   P     +P  S   +  P+          +     +    +  
Sbjct: 108 AGPTIQTEPGQLYPVQVPVMVTQNPANSP--LDQPAQQRALQQLQQRYGAPASGQLPSQQ 165

Query: 557 PPPSPSPPTPPPSPYDNTPLPP 578
                +  +       N   PP
Sbjct: 166 QSAQKNDESQLQQQ-PNGETPP 186

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 27/141 (19%), Positives = 38/141 (26%), Gaps = 13/141 (9%)

Query: 315 KPVPAPRPANSPGPFIRPSPPPPPTSKSSP----STRSHPTPPPPANSPPKSFHSPPSPP 370
            P P   P  +  P   P PPP    ++ P       + PT  P AN P           
Sbjct: 50  DPSPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPAT---FALPAG 106

Query: 371 PPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPP-----PSHYHNTPPPPTKKASPSTHY 425
           P  PT +  P    P   P +   +P+      P               P       +  
Sbjct: 107 PAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAP-ASGQLPSQQ 165

Query: 426 APPPPPRFYYVPKQSPPPPPP 446
                     + +Q     PP
Sbjct: 166 QSAQKNDESQLQQQPNGETPP 186

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 33/120 (27%), Positives = 46/120 (38%), Gaps = 11/120 (9%)

Query: 245 GEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSG---GSGWGGSPAPATSPRSSPPSS 301
              PS +AA G      A  P   ++   G    +G    S    +PAP+ +P    P  
Sbjct: 378 ASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWD 437

Query: 302 SSPPPPKRKPPVVKPVPAPR-PANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPP 360
            +PP P R    + P PAPR P  SP P       P   + +S +  +   P   A   P
Sbjct: 438 DAPPAPPRSG--IPPRPAPRMPEASPVP-----GAPDSVASASDAPPTLGDPSDTAEHTP 490

Length = 624

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 24/115 (20%), Positives = 30/115 (26%), Gaps = 4/115 (3%)

Query: 411 TPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEV 470
               P+  A+       P           +P   P     P P       PP P  +A  
Sbjct: 395 AAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQ----PAPAPAPAPAPPSPAGNAPA 450

Query: 471 PAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSG 525
                   +  P       P A   P A     PP    P  AP    A   P+G
Sbjct: 451 GGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505

Length = 824

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 34/179 (18%), Positives = 44/179 (24%), Gaps = 19/179 (10%)

Query: 434 YYVPKQSPPPPPPVEYYPPPYQQ-----HMAPPPPPGESAEVPAPSYFAYSP---PPPPA 485
           +  P +     PPV     P  Q        P P  GE    PAP  +        P   
Sbjct: 333 WAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQ 392

Query: 486 RDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSH---------HHN 536
            +E    P  P  P  YY P    P   P Y  A   P+      P+             
Sbjct: 393 YNEPLQQPVQPQQP--YYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAE 450

Query: 537 PPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPPVIPYY 595
                     +         P         P        + P   V    P  P + Y+
Sbjct: 451 EQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYF 509

Length = 1355

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 24/103 (23%), Positives = 31/103 (30%), Gaps = 14/103 (13%)

Query: 489 NPVAPATPGAP-VEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPS 547
            PV    P  P      P +  P P+       P  +    IPP      P    +T   
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTR-----PKAAAAANIPPK----EPV--RETATP 409

Query: 548 PNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPP 590
           P      V PP   +P + P       P+       Y  P PP
Sbjct: 410 PPVPPRPVAPPVPHTPESAPKLTRAAIPVD--EKPKYTPPAPP 450

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 18/81 (22%), Positives = 21/81 (25%), Gaps = 5/81 (6%)

Query: 435 YVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPA 494
           Y P  +  P               A  P    +A+ PA    A      PA    P A A
Sbjct: 36  YGPGSTAAPTAA-----AAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAA 90

Query: 495 TPGAPVEYYPPKKGNPPPAPE 515
              A     P       PA  
Sbjct: 91  AAAAAPAAPPAAAAAAAPAAA 111

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 8/85 (9%)

Query: 412 PPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVP 471
           P       + +   A            ++P  P P     PP     A PP P  +A   
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAP----APPAAAAPAAPPKPAAAAAAA 93

Query: 472 APSYFAYSPPPPPARDENPVAPATP 496
           A      + PP  A    P A A  
Sbjct: 94  AAP----AAPPAAAAAAAPAAAAVE 114

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 12/85 (14%), Positives = 20/85 (23%), Gaps = 9/85 (10%)

Query: 347 RSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPS 406
               T  P A +   +  +      P      +P    P    P    +  PK      +
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAP----AAPPKPAAAAAA 92

Query: 407 HYHNTPPPPTKKASPSTHYAPPPPP 431
                   P    + +   AP    
Sbjct: 93  -----AAAPAAPPAAAAAAAPAAAA 112

Length = 1228

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 15/73 (20%), Positives = 20/73 (27%), Gaps = 5/73 (6%)

Query: 317 VPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTH 376
            PAP  A    P       PPP +           P  PA + P    +P  P    P  
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVP---PAAPARPAAARPAP--APAPPAAAAPPA 435

Query: 377 KESPRTHLPPTPP 389
           + +          
Sbjct: 436 RSADPAAAASAGD 448

Length = 576

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 30/144 (20%), Positives = 39/144 (27%), Gaps = 22/144 (15%)

Query: 382 THLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSP 441
              P  P P      +P      P      PP    +A P    A          P  SP
Sbjct: 45  AEFPWDPSP-----QAPPPVAQLPQPLPQPPPTQALQALP----AGDQQQHN--TPTGSP 93

Query: 442 PPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPS----YFAYSPPPPPARDENPV------ 491
              PP  +  P           PG+   V  P       A SP   PA+           
Sbjct: 94  AANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRY 153

Query: 492 -APATPGAPVEYYPPKKGNPPPAP 514
            APA+   P +    +K +     
Sbjct: 154 GAPASGQLPSQQQSAQKNDESQLQ 177

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|233154 TIGR00859, ENaC, sodium channel transporter

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 12/57 (21%), Positives = 18/57 (31%)

Query: 515 EYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPY 571
           +++     P   +   P     PPS     PP+               P TPPP+  
Sbjct: 537 KWWQRRRGPPYAEPPEPVSADTPPSLQLDDPPTFPSALPLPHASGLSLPGTPPPNYN 593

The Epithelial Na+ Channel (ENaC) Family (TC 1.A.06)The ENaC family consists of sodium channels from animals and has no recognizable homologues in other eukaryotes or bacteria. The vertebrate ENaC proteins from epithelial cells cluster tightly together on the phylogenetic tree: voltage-insensitive ENaC homologues are also found in the brain. Eleven sequenced C. elegans proteins, including the degenerins, are distantly related to the vertebrate proteins as well as to each other. At least some ofthese proteins form part of a mechano-transducing complex for touch sensitivity. Other members of the ENaC family, the acid-sensing ion channels, ASIC1-3,are homo- or hetero-oligomeric neuronal H+-gated channels that mediate pain sensation in response to tissue acidosis. The homologous Helix aspersa(FMRF-amide)-activated Na+ channel is the first peptide neurotransmitter-gated ionotropic receptor to be sequenced.Mammalian ENaC is important for the maintenance of Na+ balance and the regulation of blood pressure. Three homologous ENaC subunits, a, b and g, havebeen shown to assemble to form the highly Na+-selective channel.This model is designed from the vertebrate members of the ENaC family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 595

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 277 GGSGGSGWGGSPAPATSP-RSSPPSSSSPPPPKR-KPPVVKPVPAPRPANSPGPFIRPSP 334
           G +     G + AP+  P   +PP++   P P   +PP  KPV  P+P   P   +   P
Sbjct: 70  GAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPP 129

Query: 335 PPPPTSKSSPSTRSHPT 351
            P P  K     ++ PT
Sbjct: 130 APKPEPKPVVEEKAAPT 146

Length = 226

>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit Tim54

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 22/93 (23%), Positives = 30/93 (32%), Gaps = 16/93 (17%)

Query: 327 GPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPP---PPPTHKESPRTH 383
           GP   P PP P   +++P T    TP   + + P    +  +P      P      P   
Sbjct: 193 GPLDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKP 252

Query: 384 LPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPT 416
             P P   Y            P  Y + P PP 
Sbjct: 253 PVPKP---YIS----------PDEYPSAPLPPE 272

Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targetting information, into the inner membrane. Length = 377

>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1 family)

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 28/163 (17%), Positives = 47/163 (28%), Gaps = 32/163 (19%)

Query: 282 SGWGGSPAPAT-SPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTS 340
            G   S  P+T S R +  + +S  P  ++ P +      + + S       S     T 
Sbjct: 461 YGSTESSVPSTPSTRRNDRNITSNTPSLKRTPNLT-----KSSLS----QEASLISKSTG 511

Query: 341 ---KSSPSTRSHPTPPPPANSP------PKSFHSP------PSPPPPPPTHKESPRTHLP 385
              K S   R    P  PA S        +S  +        SP        E     + 
Sbjct: 512 NTHKHSTPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSSPGSINSKSPEHSVPLVR 571

Query: 386 PTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPP 428
                +   +   +H  P  +          K+    +  +PP
Sbjct: 572 VFDIHLRASTTKGRHSTPSTNEK-------KKRLLKRSPLSPP 607

Length = 619

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 32/169 (18%), Positives = 50/169 (29%), Gaps = 17/169 (10%)

Query: 294 PRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPP 353
             +   S ++  P +   P     P+     S        P       ++ + R   T P
Sbjct: 169 KTAVTTSKTTSWPTEVSHP---TYPSQVTPQS-------QPATQGHQTATANQRLSSTEP 218

Query: 354 PPANSPPKSFHSPPSPPPPPPTHKESPRT-HLPPTPPPVYNVSPSPKHFPPPPSHYHNTP 412
                   S +  P   PPP     S    H P T     + +   +           TP
Sbjct: 219 VGTQGTTTSSNPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRK----TP 274

Query: 413 PPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPP 461
           P  + + SP +   PPP  +     +  P P P           H +PP
Sbjct: 275 PATSNRRSPHSTATPPPTTKRQETGR--PTPRPTATTQSGSSPPHSSPP 321

Length = 408

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 1/96 (1%)

Query: 413 PPPTKKASPSTHYAPPPPPRFYYVPK-QSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVP 471
             P++  + +   A    P+ +  P  +  P  P    Y  P +  M   PP  +    P
Sbjct: 354 TAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDP 413

Query: 472 APSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKK 507
                     P  +    PV P  P     Y  P  
Sbjct: 414 GLVSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMPIS 449

Length = 663

>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 17/80 (21%), Positives = 23/80 (28%), Gaps = 6/80 (7%)

Query: 324 NSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTH 383
           +S  P  R       +S SS  +    +  P       S  S    P   P  K      
Sbjct: 2   SSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPK------ 55

Query: 384 LPPTPPPVYNVSPSPKHFPP 403
           L    PP   + P+     P
Sbjct: 56  LSSPSPPSVTLPPAATTQTP 75

Length = 590

>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional

 Score = 40.5 bits (94), Expect = 0.002
 Identities = 23/120 (19%), Positives = 36/120 (30%)

Query: 290 PATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSH 349
           P  +P     +S +P P           P    A +P    +  P P P   +S +    
Sbjct: 40  PDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPA 99

Query: 350 PTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYH 409
             P   A   P +  +  S         ++  +     P P  +   SP  F    S  H
Sbjct: 100 VAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFAYTRSMEH 159

Length = 566

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 20 SIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRF 76
          S+DL++  +   +P      L +L +  ++ N    + P  F  L  L  +DLS N  
Sbjct: 4  SLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 18/81 (22%), Positives = 23/81 (28%), Gaps = 5/81 (6%)

Query: 296 SSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPP 355
            S   S          P   P P+P PA        PS P    + ++PS       PP 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQ-----PSAPKTKQAATTPSPPPAKASPPI 415

Query: 356 ANSPPKSFHSPPSPPPPPPTH 376
                 +  SP  P       
Sbjct: 416 PVPAEPTEPSPTPPANAANAP 436

Length = 620

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 18/83 (21%), Positives = 23/83 (27%), Gaps = 5/83 (6%)

Query: 389 PPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVE 448
           P         K  P P     +  P P K  +P    A  P P     P+Q PP      
Sbjct: 382 PSPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVAR--- 438

Query: 449 YYPPPYQQHMAPPPPPGESAEVP 471
               P         P   ++  P
Sbjct: 439 --SAPLPPSPQASAPRNVASGKP 459

Length = 620

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 40.3 bits (95), Expect = 0.003
 Identities = 21/103 (20%), Positives = 28/103 (27%), Gaps = 15/103 (14%)

Query: 475 YFA-YSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSH 533
           +FA Y P    A      A A   +     P  K    PAP    A P  +     P   
Sbjct: 32  FFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAP----APPAAAAPAAPPKP- 86

Query: 534 HHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPL 576
                        +      A P   + + P       + TPL
Sbjct: 87  ---------AAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPL 120

Length = 1228

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 19/63 (30%), Positives = 21/63 (33%)

Query: 411 TPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEV 470
            P PP+      T  AP  PP     P     P  P    P P     A   PP  SA+ 
Sbjct: 381 APAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADP 440

Query: 471 PAP 473
            A 
Sbjct: 441 AAA 443

Length = 576

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 7/74 (9%)

Query: 276 GGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPP 335
            G               +P + PP+++ P PP          PAP PA            
Sbjct: 379 RGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPA-------AA 431

Query: 336 PPPTSKSSPSTRSH 349
            PP   + P+  + 
Sbjct: 432 APPARSADPAAAAS 445

Length = 576

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 25/147 (17%), Positives = 32/147 (21%), Gaps = 17/147 (11%)

Query: 329 FIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTP 388
              PSP  PP           P P P           P        T   SP  + P T 
Sbjct: 48  PWDPSPQAPPP------VAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATF 101

Query: 389 PPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVE 448
                  P+       P   +    P            P   P     P Q        +
Sbjct: 102 AL--PAGPAGPTIQTEPGQLYPVQVP------VMVTQNPANSPLDQ--PAQQRALQQLQQ 151

Query: 449 YYPPPYQ-QHMAPPPPPGESAEVPAPS 474
            Y  P   Q  +      ++ E     
Sbjct: 152 RYGAPASGQLPSQQQSAQKNDESQLQQ 178

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 27/142 (19%), Positives = 34/142 (23%), Gaps = 12/142 (8%)

Query: 311 PPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPP 370
            P   P  A  P   P P    +    P         + PT  P AN P           
Sbjct: 52  SPQAPPPVAQLPQPLPQPPPTQALQALPAGD--QQQHNTPTGSPAANPPATF---ALPAG 106

Query: 371 PPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPP-----PSHYHNTPPPPTKKASPSTH- 424
           P  PT +  P    P   P +   +P+      P               P     PS   
Sbjct: 107 PAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASGQLPSQQQ 166

Query: 425 -YAPPPPPRFYYVPKQSPPPPP 445
                   +    P    PP  
Sbjct: 167 SAQKNDESQLQQQPNGETPPQQ 188

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|233154 TIGR00859, ENaC, sodium channel transporter

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 15/69 (21%)

Query: 325 SPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHL 384
                   + PP P S  +P +     PP   ++ P        P              L
Sbjct: 540 QRRRGPPYAEPPEPVSADTPPSLQLDDPPTFPSALP-------LPHASGL--------SL 584

Query: 385 PPTPPPVYN 393
           P TPPP YN
Sbjct: 585 PGTPPPNYN 593

The Epithelial Na+ Channel (ENaC) Family (TC 1.A.06)The ENaC family consists of sodium channels from animals and has no recognizable homologues in other eukaryotes or bacteria. The vertebrate ENaC proteins from epithelial cells cluster tightly together on the phylogenetic tree: voltage-insensitive ENaC homologues are also found in the brain. Eleven sequenced C. elegans proteins, including the degenerins, are distantly related to the vertebrate proteins as well as to each other. At least some ofthese proteins form part of a mechano-transducing complex for touch sensitivity. Other members of the ENaC family, the acid-sensing ion channels, ASIC1-3,are homo- or hetero-oligomeric neuronal H+-gated channels that mediate pain sensation in response to tissue acidosis. The homologous Helix aspersa(FMRF-amide)-activated Na+ channel is the first peptide neurotransmitter-gated ionotropic receptor to be sequenced.Mammalian ENaC is important for the maintenance of Na+ balance and the regulation of blood pressure. Three homologous ENaC subunits, a, b and g, havebeen shown to assemble to form the highly Na+-selective channel.This model is designed from the vertebrate members of the ENaC family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 595

>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 2/92 (2%)

Query: 300 SSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSP 359
           ++S   P +      K      P    GP  R  P  P     S   RS  T  PP    
Sbjct: 350 TASLTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQF 409

Query: 360 PKS--FHSPPSPPPPPPTHKESPRTHLPPTPP 389
                  SP +P  P  ++   P   +PP P 
Sbjct: 410 CGDPGLVSPYNPQSPGTSYGPEPVGPVPPQPT 441

Length = 663

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 52/232 (22%), Positives = 61/232 (26%), Gaps = 52/232 (22%)

Query: 371  PPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPP 430
            P  P ++       P         +P P    PP       P        P      P  
Sbjct: 2475 PGAPVYRRPAEARFPFAAGA----APDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVH 2530

Query: 431  PRFYY---------VPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPP 481
            PR                  PPPP     PP       PPP P      PA +  A  P 
Sbjct: 2531 PRMLTWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPD 2590

Query: 482  PPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWH 541
             PP         A P APV+     +G  PP+P       P                   
Sbjct: 2591 APPQ-------SARPRAPVDDRGDPRGPAPPSPLPPDTHAPD------------------ 2625

Query: 542  HQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPPVIP 593
                          PPPPSPSP    P P+    +PP         P  V  
Sbjct: 2626 --------------PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (94), Expect = 0.004
 Identities = 14/75 (18%), Positives = 19/75 (25%)

Query: 357 NSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPT 416
           ++   +   PP    PPP     P      T PP     P P       +     P   +
Sbjct: 516 SASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS 575

Query: 417 KKASPSTHYAPPPPP 431
                     P P  
Sbjct: 576 PPPPIPEEPTPSPTK 590

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 311 PPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPP 370
           P      P P    +P P     P PP       + R  P P PPA + P +  + P+  
Sbjct: 385 PSAAWGAPTPAAPAAPPP-AAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAA 443

Query: 371 P 371
            
Sbjct: 444 A 444

Length = 576

>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 300 SSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSP 359
           S+++ P     P          P NS  P +  +P P    + +            A +P
Sbjct: 167 STTTDPATTPAPA---APVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATP 223

Query: 360 PKSFHSPPSPPPPPPTHKESPRT 382
             +  + P    P PT +    T
Sbjct: 224 APAAPATPDGAAPLPTDQAGVST 246

Length = 331

>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane glycoprotein G

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 34/150 (22%), Positives = 45/150 (30%), Gaps = 9/150 (6%)

Query: 287 SPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPST 346
           + A      + P  +          P  +P P+ R   S  P   PS      S +    
Sbjct: 207 ATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQR-GPSGSPQHPPSTTSQDQSTTGDGQ 265

Query: 347 RSHPTPP-PPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPP 405
                   PPA S  +S HS  +PPP     +    T  P           SP H  PP 
Sbjct: 266 EHTQRRKTPPATSNRRSPHSTATPPPTTKRQETGRPTPRPTATT---QSGSSPPHSSPPG 322

Query: 406 SHYHNTPPPPTKKASPSTHYAPPPPPRFYY 435
              +    P T+         PP P    Y
Sbjct: 323 VQAN----PTTQNLVDCKELDPPKPNSICY 348

Length = 408

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	595
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.82
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.79
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.78
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.78
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.72
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.7
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.68
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.64
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.54
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.49
PLN03150	623	hypothetical protein; Provisional	99.47
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.4
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.4
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.4
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.35
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.32
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.27
PLN03150	623	hypothetical protein; Provisional	99.26
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.25
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.17
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.09
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	99.03
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.99
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.97
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.94
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.88
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.84
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.81
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.81
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.71
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.48
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.43
PRK15386	426	type III secretion protein GogB; Provisional	98.36
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.21
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.1
PRK15386	426	type III secretion protein GogB; Provisional	98.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.0
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.83
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.77
KOG4308	478	consensus LRR-containing protein [Function unknown	97.76
KOG4341	483	consensus F-box protein containing LRR [General fu	97.64
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.58
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.54
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.54
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.44
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.24
KOG4341	483	consensus F-box protein containing LRR [General fu	97.1
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.09
KOG4308	478	consensus LRR-containing protein [Function unknown	97.05
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.96
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.73
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	96.67
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.39
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	95.89
PHA03247	3151	large tegument protein UL36; Provisional	95.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.05
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.68
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	94.19
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.97
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	93.73
KOG1665	302	consensus AFH1-interacting protein FIP2, contains	92.92
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.44
PRK15196	350	secreted effector protein PipB2; Provisional	91.02
smart00370	26	LRR Leucine-rich repeats, outliers.	90.41
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.41
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.83
PRK09718	512	hypothetical protein; Validated	89.19
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.11
PRK09718	512	hypothetical protein; Validated	88.06
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	87.51
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	87.14
smart00370	26	LRR Leucine-rich repeats, outliers.	85.67
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	85.67
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	82.53
PRK15196	350	secreted effector protein PipB2; Provisional	82.36
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.23

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=3.9e-30  Score=306.96  Aligned_cols=254  Identities=27%  Similarity=0.499  Sum_probs=199.6

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      +.+|+.|+|++|++.+.++..+..+.+|+.|+|++|++.+.++.+|+++.+|+.|+|++|+|++.++..|.++.+|++||
T Consensus       355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  434 (968)
T PLN00113        355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD  434 (968)
T ss_pred             CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence            34444444544444444444444455555555555555555566666677777777777777777777777777778888


Q ss_pred             ccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628           95 LRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        95 Ls~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      |++|+|+|.++..+.. .+|+.|+|++|++.+.++..+...+|++|+|++|++.+.++..|..+ .+|++|+|++|++.+
T Consensus       435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~  513 (968)
T PLN00113        435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSL-SELMQLKLSENKLSG  513 (968)
T ss_pred             CcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhh-hccCEEECcCCccee
Confidence            8888877777665544 67888888888888888888877889999999999999999988888 789999999999999


Q ss_pred             CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccc
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAA  253 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~  253 (595)
                      .+++.|++|.+|++|+|++|.|+|.++..|+.|.+|++|||++|+|+|.++..+.++.+|+.|||++|+|+|.++.....
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~  593 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF  593 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998876555


Q ss_pred             cCCCCcccccCCCCCC
Q 007628          254 AGGGGRMMAARPADCS  269 (595)
Q Consensus       254 ~~~~~~~~~~~~~~c~  269 (595)
                      .......+.+|...|+
T Consensus       594 ~~~~~~~~~~n~~lc~  609 (968)
T PLN00113        594 LAINASAVAGNIDLCG  609 (968)
T ss_pred             cccChhhhcCCccccC
Confidence            5444455566665654

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=9.8e-29  Score=294.91  Aligned_cols=234  Identities=28%  Similarity=0.508  Sum_probs=145.0

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      +.+|++|||++|++.+.++..|+++.+|++|+|++|.+.+.++..|++|.+|++|+|++|++.+.++..|.+|.+|++|+
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            44455555555555555555566666666666666666666666666666666666666666666666666666666666


Q ss_pred             ccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           95 LRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        95 Ls~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      |++|++.+.++..+.. .+|++|+|++|++.+.++..+.. .+|++|+|++|++.+.++.+++++ .+|++|+|++|++.
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~  297 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL-QKLISLDLSDNSLS  297 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhc-cCcCEEECcCCeec
Confidence            6666666555555444 55666666666666555554443 456666666666666666666655 56666666666666


Q ss_pred             CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCc
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS  249 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~  249 (595)
                      +.++..|.++.+|++|+|++|.+++.++..|+.+.+|++|+|++|++++.++..++.+.+|+.|+|++|++++.++.
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~  374 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE  374 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666665544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.94  E-value=5.1e-28  Score=256.12  Aligned_cols=237  Identities=21%  Similarity=0.239  Sum_probs=174.2

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      +|++|.+|+|++|.|+.+-...|.+|.+|+.|||..|+|.-+.-..|.+|.+|+.|.|.+|+|...-.+.|..|.++++|
T Consensus       195 ~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l  274 (873)
T KOG4194|consen  195 SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHL  274 (873)
T ss_pred             ccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccccee
Confidence            44445555555555554444444445555555555555543333445555555555555555555556677778888888


Q ss_pred             EccCCCCCCCCCccccc-cCCCeeeccCCccccCCCccc-CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhcccc
Q 007628           94 DLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENL-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL  171 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l  171 (595)
                      +|+.|+++..-..++|. ..|+.|+|+.|.++-.-.+.+ +..+|++|+|++|+|+..-.++|..+ ..|++|+|++|.+
T Consensus       275 ~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~Nsi  353 (873)
T KOG4194|consen  275 NLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSHNSI  353 (873)
T ss_pred             ecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH-HHhhhhcccccch
Confidence            88888888555556665 788888888888875444443 44679999999999998777888777 8999999999999


Q ss_pred             CCCCCCccCCCccceEEeccCccccCCCCC---CcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPS---SIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       172 ~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~---~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      ...--.+|..|++|++|||++|.|++++.+   .|..|.+|+.|+|.+|+|...--.+|.+|.+|+.|||.+|-|...-.
T Consensus       354 ~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~  433 (873)
T KOG4194|consen  354 DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQP  433 (873)
T ss_pred             HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecc
Confidence            987778899999999999999999988876   47789999999999999996666899999999999999998876554


Q ss_pred             ccc
Q 007628          249 SCT  251 (595)
Q Consensus       249 ~~~  251 (595)
                      ..+
T Consensus       434 nAF  436 (873)
T KOG4194|consen  434 NAF  436 (873)
T ss_pred             ccc
Confidence            433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.93  E-value=7.8e-28  Score=254.72  Aligned_cols=234  Identities=20%  Similarity=0.227  Sum_probs=164.9

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      .+|+.|+|.+|.|+.+..+++..+..|+.|||+.|.|+.+--.+|-.-.+|++|+|++|+|+.+.-+.|.+|.+|.+|.|
T Consensus       125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL  204 (873)
T KOG4194|consen  125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL  204 (873)
T ss_pred             cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence            34666666666666655555555555555555555555444444444445555555555555444444555555555555


Q ss_pred             cCCCCCCCCCccccc--cCCCeeecc------------------------CCccccCC-CcccCCCCceeEEeeccCCCC
Q 007628           96 RFNEFEGSVPSKLFD--KDLDAIFLN------------------------DNRFQFGI-PENLGNSPVSVLVFANNDLGG  148 (595)
Q Consensus        96 s~N~l~g~ip~~l~~--~~L~~L~L~------------------------~N~l~~~~-p~~l~~~~L~~L~L~~N~l~~  148 (595)
                      ++|+|+ .++...|.  .+|+.|+|.                        .|++...- ..++++.++++|+|..|++..
T Consensus       205 srNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  205 SRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             ccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence            555554 33333333  344444444                        44443221 123345688999999999998


Q ss_pred             CcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhcc
Q 007628          149 CIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVC  228 (595)
Q Consensus       149 ~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~  228 (595)
                      .-.++++.+ ..|++|+|++|.|..+..+.|..+.+|++|||++|+|+....+.|..|..|++|+|++|+|+......|.
T Consensus       284 vn~g~lfgL-t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~  362 (873)
T KOG4194|consen  284 VNEGWLFGL-TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV  362 (873)
T ss_pred             hhccccccc-chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence            888999998 8999999999999999899999999999999999999988888899999999999999999877778899


Q ss_pred             CCCCCcEEEcccccCCCCCCccc
Q 007628          229 QLPNLQNFTYSFNYFTGEPPSCT  251 (595)
Q Consensus       229 ~l~~L~~L~Ls~N~Lsg~~p~~~  251 (595)
                      ++.+|++|||++|.|++.|.+..
T Consensus       363 ~lssL~~LdLr~N~ls~~IEDaa  385 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNELSWCIEDAA  385 (873)
T ss_pred             HhhhhhhhcCcCCeEEEEEecch
Confidence            99999999999999998887643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=8.2e-25  Score=232.81  Aligned_cols=225  Identities=25%  Similarity=0.390  Sum_probs=143.4

Q ss_pred             CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628           11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL   90 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L   90 (595)
                      ++=+|..|.+|||++|+++. .+..+.+.+++-+|+|++|+|..+--..|.+|++|-+|||++|+|. .++-.+..|.+|
T Consensus        98 diF~l~dLt~lDLShNqL~E-vP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~L  175 (1255)
T KOG0444|consen   98 DIFRLKDLTILDLSHNQLRE-VPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSML  175 (1255)
T ss_pred             hhcccccceeeecchhhhhh-cchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhh
Confidence            34457778888888888875 6777888888888888888888665566777888888888888776 445555555555


Q ss_pred             CEEEccCCC-------------------------------------------------CCCCCCccccc-cCCCeeeccC
Q 007628           91 KYLDLRFNE-------------------------------------------------FEGSVPSKLFD-KDLDAIFLND  120 (595)
Q Consensus        91 ~~LdLs~N~-------------------------------------------------l~g~ip~~l~~-~~L~~L~L~~  120 (595)
                      ++|+|++|-                                                 |. .+++.++. .+|+.|+|++
T Consensus       176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSG  254 (1255)
T ss_pred             hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCc
Confidence            555555554                                                 33 33333333 3444555555


Q ss_pred             CccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC-CCCCCccCCCccceEEeccCccccCCC
Q 007628          121 NRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT-GCLPPQIGMLKNLTVFDVSFNHLQGSL  199 (595)
Q Consensus       121 N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~-g~ip~~~~~L~~L~~LdLs~N~L~g~l  199 (595)
                      |+++...-..-...+|+.|+|+.|+++ .+++.++++ ..|+.|.+.+|++. .-|+..|++|.+|+++.+++|.|. .+
T Consensus       255 N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL-~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lV  331 (1255)
T KOG0444|consen  255 NKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKL-TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LV  331 (1255)
T ss_pred             CceeeeeccHHHHhhhhhhccccchhc-cchHHHhhh-HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cC
Confidence            554422211112234555666666655 456666666 56667777666655 235666777777777777777766 66


Q ss_pred             CCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEccccc
Q 007628          200 PSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY  242 (595)
Q Consensus       200 P~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~  242 (595)
                      ++.+++|.+|+.|.|++|+|. ++++.+.-|..|++|||.+|.
T Consensus       332 PEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  332 PEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             chhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence            677777777777777777766 566777777777777777663

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=1.8e-24  Score=230.26  Aligned_cols=224  Identities=28%  Similarity=0.424  Sum_probs=109.8

Q ss_pred             CCceeEEEccCCCCCCC-CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           15 LRVVASIDLNHADIAGY-LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~-lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      |..|+.+++++|++... ++.+|.+|.+|.+|||++|+|. +.+..+.+..++-.|+|++|+|..+--..|.+|..|-+|
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL  155 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL  155 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh
Confidence            33444455555554322 4455555555555555555555 445555555555555555555553333344455555555


Q ss_pred             EccCCCCCCCCCcccc-ccCCCeeeccCCcccc-CCCcccCCCCceeEEeeccC-CCCCcCcccccccchhhHHHhhccc
Q 007628           94 DLRFNEFEGSVPSKLF-DKDLDAIFLNDNRFQF-GIPENLGNSPVSVLVFANND-LGGCIPGSIGKMGKTLNEIILMNDN  170 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~-~~~L~~L~L~~N~l~~-~~p~~l~~~~L~~L~L~~N~-l~~~ip~~l~~l~~~L~~L~Ls~N~  170 (595)
                      |||+|+|. .++..+- ...|+.|+|++|-+.. .+-..-....|++|.+++.+ -...++.+|..| .+|..++|+.|+
T Consensus       156 DLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l-~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  156 DLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL-HNLRDVDLSENN  233 (1255)
T ss_pred             ccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh-hhhhhccccccC
Confidence            55555554 2222222 2445555555543321 11111111233344444322 223444555555 455555555555


Q ss_pred             cCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCC
Q 007628          171 LTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT  244 (595)
Q Consensus       171 l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Ls  244 (595)
                      +. ++++.+.++.+|+.|+|++|.|+ ++...++...+|++|+|+.|+|+ .+++.+++|.+|+.|.+.+|.|+
T Consensus       234 Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~  304 (1255)
T KOG0444|consen  234 LP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT  304 (1255)
T ss_pred             CC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence            55 55555555555666666666555 44444445555555555555555 45566666666666666666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=5.5e-24  Score=217.56  Aligned_cols=231  Identities=21%  Similarity=0.334  Sum_probs=184.0

Q ss_pred             CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628           11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL   90 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L   90 (595)
                      |...|..+.+|++.+|++.. ++.+++++..++.|+.++|++. +++.+++.+.+|+.|++++|++. .+.+.|+.|..|
T Consensus        63 dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l  139 (565)
T KOG0472|consen   63 DLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL  139 (565)
T ss_pred             hhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence            34556667777777777765 5667777777777777777777 67777777778888888888877 566677777778


Q ss_pred             CEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccc
Q 007628           91 KYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDN  170 (595)
Q Consensus        91 ~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~  170 (595)
                      +.||..+|+|.....+..+..+|..|++.+|++....+..+..+.|++|+..+|.++ .++.+++.| .+|+.|+|..|+
T Consensus       140 ~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l-~~L~~LyL~~Nk  217 (565)
T KOG0472|consen  140 EDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGL-ESLELLYLRRNK  217 (565)
T ss_pred             hhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcch-hhhHHHHhhhcc
Confidence            888888888874333444447788888888888877677777778889999888886 788999988 889999999999


Q ss_pred             cCCCCCCccCCCccceEEeccCccccCCCCCCcC-CCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCc
Q 007628          171 LTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIG-NMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS  249 (595)
Q Consensus       171 l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~-~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~  249 (595)
                      |. .++ +|.+|..|++|+++.|+|+ .++.+++ .|.+|.+|||.+|+|+ ++++.++.+.+|++|||++|.+++...+
T Consensus       218 i~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~s  293 (565)
T KOG0472|consen  218 IR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYS  293 (565)
T ss_pred             cc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcc
Confidence            88 555 8899999999999999998 6666655 8999999999999998 7889999999999999999999987665


Q ss_pred             c
Q 007628          250 C  250 (595)
Q Consensus       250 ~  250 (595)
                      .
T Consensus       294 L  294 (565)
T KOG0472|consen  294 L  294 (565)
T ss_pred             c
Confidence            3

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.84  E-value=8.4e-23  Score=208.77  Aligned_cols=251  Identities=20%  Similarity=0.246  Sum_probs=166.5

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccC-CcCCCcCchhcCCCCCCCEEEcc
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSN-NRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~-N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      .+.|+|..|+|+.+-.++|..+++||.|||++|+|+.+-+++|..|.+|.+|.|.+ |+|+.+--+.|.+|..|+.|.|.
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN  148 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN  148 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence            57899999999999999999999999999999999999999999999998887666 99997777899999999999999


Q ss_pred             CCCCCCCCCccccc--cCCCeeeccCCccccCCCccc-CCCCceeEEeeccCCC-CC-----------cC--ccccccc-
Q 007628           97 FNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENL-GNSPVSVLVFANNDLG-GC-----------IP--GSIGKMG-  158 (595)
Q Consensus        97 ~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l-~~~~L~~L~L~~N~l~-~~-----------ip--~~l~~l~-  158 (595)
                      -|++. .+....+.  .+|..|.|.+|.++......+ ....++.+.+..|.|. .+           .+  -+++.+. 
T Consensus       149 an~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  149 ANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             hhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            99988 45444444  678888888888774333222 2244455555444411 00           00  0001110 


Q ss_pred             ------------------chhhHH--Hhh-ccccCCCCC-CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccC
Q 007628          159 ------------------KTLNEI--ILM-NDNLTGCLP-PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAH  216 (595)
Q Consensus       159 ------------------~~L~~L--~Ls-~N~l~g~ip-~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~  216 (595)
                                        ..++.+  .++ .+.+.++.+ ..|..|.+|++|+|++|+|++.-..+|.++..|++|+|..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence                              011111  111 111222222 2366777777777777777777777777777777777777


Q ss_pred             CcCCCCCchhccCCCCCcEEEcccccCCCCCCccccccC-CCCcccccCCCCCC
Q 007628          217 NRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAG-GGGRMMAARPADCS  269 (595)
Q Consensus       217 N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~~-~~~~~~~~~~~~c~  269 (595)
                      |+|..+--..|.++..|+.|+|.+|+|+..-+..+.... .....+..|++.|+
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence            777766666777777777777777777765443332221 22233445555554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.82  E-value=8.3e-23  Score=208.98  Aligned_cols=224  Identities=26%  Similarity=0.379  Sum_probs=196.7

Q ss_pred             CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628           12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK   91 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~   91 (595)
                      ++++.+++.|+.++|++.. ++++++.+..|+.|++++|++. .+.++|++|.+|+.|+..+|+|+ .+++.+.+|.+|.
T Consensus        87 ig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~  163 (565)
T KOG0472|consen   87 IGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLS  163 (565)
T ss_pred             HHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHH
Confidence            3566778999999999986 7899999999999999999999 68889999999999999999999 7888999999999


Q ss_pred             EEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhcccc
Q 007628           92 YLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL  171 (595)
Q Consensus        92 ~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l  171 (595)
                      .|++.+|+++...+..+....|++|++..|.++..-++..+...|+.|+|.+|+|.. ++ +|..+ ..|++|++..|.|
T Consensus       164 ~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gc-s~L~Elh~g~N~i  240 (565)
T KOG0472|consen  164 KLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF-LP-EFPGC-SLLKELHVGENQI  240 (565)
T ss_pred             HhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc-CC-CCCcc-HHHHHHHhcccHH
Confidence            999999999955555555589999999999887544444455789999999999984 45 77777 7899999999998


Q ss_pred             CCCCCCccC-CCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCC
Q 007628          172 TGCLPPQIG-MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTG  245 (595)
Q Consensus       172 ~g~ip~~~~-~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg  245 (595)
                      . .++.+++ +|.+|.+|||++|+|+ +++++++.|++|+.|||++|.|+ .++..+++| +|+.|-|.+|-|..
T Consensus       241 ~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT  311 (565)
T KOG0472|consen  241 E-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT  311 (565)
T ss_pred             H-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH
Confidence            8 6666665 8999999999999999 89999999999999999999999 577899999 89999999998864

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.79  E-value=6.3e-21  Score=175.67  Aligned_cols=185  Identities=29%  Similarity=0.504  Sum_probs=150.8

Q ss_pred             hcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc-cCCC
Q 007628           36 IGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLD  114 (595)
Q Consensus        36 ~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~  114 (595)
                      +.++.+++.|.|++|+|+ .++..+++|.+|+.|+|.+|+|. .++..++.|.+|+.|+++.|++. .++..+.. ..|+
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le  105 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE  105 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence            456778889999999999 66778999999999999999998 78889999999999999999987 55554433 4555


Q ss_pred             eeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCcc
Q 007628          115 AIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNH  194 (595)
Q Consensus       115 ~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~  194 (595)
                      .|||..|++.                      +..+++.|+.| ..|+.|+|++|.|. .++.++++|++|+.|.|.+|.
T Consensus       106 vldltynnl~----------------------e~~lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  106 VLDLTYNNLN----------------------ENSLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             hhhccccccc----------------------cccCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCc
Confidence            5555555443                      23577888888 89999999999998 899999999999999999999


Q ss_pred             ccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCC---CCcEEEcccccCCCCCCc
Q 007628          195 LQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLP---NLQNFTYSFNYFTGEPPS  249 (595)
Q Consensus       195 L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~---~L~~L~Ls~N~Lsg~~p~  249 (595)
                      |. .++.+++.|.+|++|++++|+|+ .++..++++.   +-+++.+.+|-+-..|.+
T Consensus       162 ll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIae  217 (264)
T KOG0617|consen  162 LL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIAE  217 (264)
T ss_pred             hh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHHH
Confidence            98 89999999999999999999998 6777776654   335566777776655544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.78  E-value=1.9e-20  Score=191.68  Aligned_cols=222  Identities=18%  Similarity=0.295  Sum_probs=166.3

Q ss_pred             EEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc-CC
Q 007628           20 SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR-FN   98 (595)
Q Consensus        20 ~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs-~N   98 (595)
                      ++|-++.+++. ++..+-.  +..+|+|..|+|+.+-+.+|+.+.+|+.|||++|+|+.+-+++|..|.+|..|.|. +|
T Consensus        50 ~VdCr~~GL~e-VP~~LP~--~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N  126 (498)
T KOG4237|consen   50 IVDCRGKGLTE-VPANLPP--ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN  126 (498)
T ss_pred             eEEccCCCccc-CcccCCC--cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence            45666666665 3444322  46789999999999888999999999999999999999999999999988777655 49


Q ss_pred             CCCCCCCccccc--cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC---
Q 007628           99 EFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT---  172 (595)
Q Consensus        99 ~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~---  172 (595)
                      +|+ .++...|.  ..|+.|.|+-|++.....+.|.. .++..|.+.+|.+..+--..|..+ ..++.|.+..|.+.   
T Consensus       127 kI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l-~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  127 KIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGL-AAIKTLHLAQNPFICDC  204 (498)
T ss_pred             chh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccch-hccchHhhhcCcccccc
Confidence            998 88888877  78999999999988766666544 567889999999885555566666 78999988888732   


Q ss_pred             ---------CCCCCccCCCccceEEecc-------------------------CccccCCCC-CCcCCCCCccEEEccCC
Q 007628          173 ---------GCLPPQIGMLKNLTVFDVS-------------------------FNHLQGSLP-SSIGNMKSLEQLNVAHN  217 (595)
Q Consensus       173 ---------g~ip~~~~~L~~L~~LdLs-------------------------~N~L~g~lP-~~l~~L~~L~~L~Ls~N  217 (595)
                               ...+.+++.+..+.-..|.                         .+.+.+..+ ..|+.|.+|++|+|++|
T Consensus       205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN  284 (498)
T KOG4237|consen  205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN  284 (498)
T ss_pred             ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence                     1222233322211111111                         112222222 24788999999999999


Q ss_pred             cCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          218 RFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       218 ~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      +|+++-..+|.++.+|++|.|..|+|...
T Consensus       285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v  313 (498)
T KOG4237|consen  285 KITRIEDGAFEGAAELQELYLTRNKLEFV  313 (498)
T ss_pred             ccchhhhhhhcchhhhhhhhcCcchHHHH
Confidence            99999999999999999999999988653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.78  E-value=3.1e-21  Score=214.45  Aligned_cols=223  Identities=25%  Similarity=0.398  Sum_probs=175.1

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY   92 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~   92 (595)
                      ..-.+|+++|+++|++++ ++++++.+.+|+.|++++|+|+ .++..+..+++|+.|++.+|.+. .++..+.+++.|++
T Consensus       238 p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~t  314 (1081)
T KOG0618|consen  238 PVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRT  314 (1081)
T ss_pred             cccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeee
Confidence            444678999999999987 5688999999999999999996 67888888999999999999988 67778888999999


Q ss_pred             EEccCCCCCCCCCccccc---------------------------cCCCeeeccCCccccCCCcccCC-CCceeEEeecc
Q 007628           93 LDLRFNEFEGSVPSKLFD---------------------------KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANN  144 (595)
Q Consensus        93 LdLs~N~l~g~ip~~l~~---------------------------~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N  144 (595)
                      |||..|+|. .++..++.                           ..|+.|+|.+|.|+..+-..+.+ ..|++|+|++|
T Consensus       315 LdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN  393 (1081)
T KOG0618|consen  315 LDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN  393 (1081)
T ss_pred             eeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc
Confidence            999999987 55543332                           12556677777777655444433 67888899988


Q ss_pred             CCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCc
Q 007628          145 DLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIP  224 (595)
Q Consensus       145 ~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP  224 (595)
                      ++...-...+.++ ..|++|+|++|+++ .+++.+.+|..|++|...+|+|. .+| ++.++..|+.|||+.|+|+...-
T Consensus       394 rL~~fpas~~~kl-e~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l  469 (1081)
T KOG0618|consen  394 RLNSFPASKLRKL-EELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL  469 (1081)
T ss_pred             ccccCCHHHHhch-HHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence            8875444445555 78888999999888 67788888888999988888888 677 78888899999999999876544


Q ss_pred             hhccCCCCCcEEEcccccC
Q 007628          225 SSVCQLPNLQNFTYSFNYF  243 (595)
Q Consensus       225 ~~l~~l~~L~~L~Ls~N~L  243 (595)
                      .......+|++|||++|..
T Consensus       470 ~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  470 PEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhhCCCcccceeeccCCcc
Confidence            4444457899999998873

>PLN03210 Resistant to P

Probab=99.75  E-value=1.4e-17  Score=201.52  Aligned_cols=224  Identities=18%  Similarity=0.220  Sum_probs=146.4

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      +.+|+.|+|++|+|.. ++..+..+.+|+.|+|++|...+.++ .+.++.+|++|+|++|.....++..|.+|.+|++|+
T Consensus       610 ~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            4677788888888765 56667788888888888776544555 377788888888888776667788888888888888


Q ss_pred             ccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCccc--------------------
Q 007628           95 LRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSI--------------------  154 (595)
Q Consensus        95 Ls~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l--------------------  154 (595)
                      |++|...+.++..+...+|+.|+|++|.....+++..  .+|++|+|.+|.|+. ++..+                    
T Consensus       688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~--~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~  764 (1153)
T PLN03210        688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIS--TNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLWE  764 (1153)
T ss_pred             CCCCCCcCccCCcCCCCCCCEEeCCCCCCcccccccc--CCcCeeecCCCcccc-ccccccccccccccccccchhhccc
Confidence            8886554567666555677777777765544443321  345566666655432 22111                    


Q ss_pred             ---------ccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCC------------------
Q 007628          155 ---------GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMK------------------  207 (595)
Q Consensus       155 ---------~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~------------------  207 (595)
                               ..+..+|+.|+|++|...+.++.+|++|.+|+.|+|++|...+.++..+ .+.                  
T Consensus       765 ~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        765 RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence                     1112357777777777777777788888888888887765433455443 333                  


Q ss_pred             ---CccEEEccCCcCCCCCchhccCCCCCcEEEccc-ccCCC
Q 007628          208 ---SLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF-NYFTG  245 (595)
Q Consensus       208 ---~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~-N~Lsg  245 (595)
                         +|++|+|++|.|+ .++.++..+.+|+.|+|++ |+|.+
T Consensus       844 ~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        844 ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc
Confidence               4555555555555 4566667777777777776 44443

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=2.3e-18  Score=197.17  Aligned_cols=204  Identities=21%  Similarity=0.391  Sum_probs=118.4

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      +...|+|++++++. ++..+.  .+|+.|+|++|+|+. ++..+.  .+|++|+|++|+|+ .++..+.  .+|+.|+|+
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls  249 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS  249 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence            35667777777765 344442  467777777777773 444432  46777777777776 3444332  357777777


Q ss_pred             CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628           97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP  176 (595)
Q Consensus        97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip  176 (595)
                      +|+|. .++..+. .+|+.|+|++|++. .+++.+. .+|++|+|++|+|++ ++..+.   .+|++|+|++|++.. ++
T Consensus       250 ~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp---~sL~~L~Ls~N~Lt~-LP  320 (754)
T PRK15370        250 INRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP---SGITHLNVQSNSLTA-LP  320 (754)
T ss_pred             CCccC-cCChhHh-CCCCEEECcCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch---hhHHHHHhcCCcccc-CC
Confidence            77776 5555443 46777777777766 3444443 367777777777763 333332   356667777776663 33


Q ss_pred             CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      ..+  ..+|+.|+|++|.|++ ++..+.  .+|+.|+|++|+|+ .++..+.  .+|+.|+|++|.|+..
T Consensus       321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~L  382 (754)
T PRK15370        321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNL  382 (754)
T ss_pred             ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCC
Confidence            322  2456666666666652 444432  45666666666665 3444332  3566666666665543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.75  E-value=3.6e-18  Score=194.80  Aligned_cols=210  Identities=21%  Similarity=0.308  Sum_probs=117.4

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcC-----------------CCCCCEEeccCCcCCCc
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRR-----------------LKLLYEVDLSNNRFVGK   79 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~-----------------L~~L~~L~Ls~N~Lsg~   79 (595)
                      +|+.|+|.+|+|+. ++.   .+.+|++|+|++|+|+.+ +..+.+                 +.+|+.|+|++|+|+ .
T Consensus       223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~  296 (788)
T PRK15387        223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-S  296 (788)
T ss_pred             CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-c
Confidence            46778888888776 332   256778888888877743 322111                 123344444444444 2


Q ss_pred             CchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccc----
Q 007628           80 FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIG----  155 (595)
Q Consensus        80 lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~----  155 (595)
                      ++.   .+.+|++|||++|+|++ ++..  ..+|+.|++.+|++++ ++...  .+|++|+|++|+|++ ++....    
T Consensus       297 LP~---~p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~lp--~~Lq~LdLS~N~Ls~-LP~lp~~L~~  366 (788)
T PRK15387        297 LPV---LPPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPTLP--SGLQELSVSDNQLAS-LPTLPSELYK  366 (788)
T ss_pred             ccc---cccccceeECCCCcccc-CCCC--cccccccccccCcccc-ccccc--cccceEecCCCccCC-CCCCCcccce
Confidence            222   13457777777777663 3321  1234445555554442 22211  245566666666653 222110    


Q ss_pred             ------------cccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628          156 ------------KMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI  223 (595)
Q Consensus       156 ------------~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i  223 (595)
                                  .+..+|+.|+|++|+|.+ ++..   ..+|+.|+|++|+|+ .++..   +.+|+.|+|++|+|+ .+
T Consensus       367 L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~L  437 (788)
T PRK15387        367 LWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RL  437 (788)
T ss_pred             ehhhccccccCcccccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-cc
Confidence                        011234455555555542 2322   235666666666666 34433   245677888888887 67


Q ss_pred             chhccCCCCCcEEEcccccCCCCCCccc
Q 007628          224 PSSVCQLPNLQNFTYSFNYFTGEPPSCT  251 (595)
Q Consensus       224 P~~l~~l~~L~~L~Ls~N~Lsg~~p~~~  251 (595)
                      +..|.+|.+|+.|+|++|.|+|.+...+
T Consensus       438 P~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        438 PESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             ChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            8888899999999999999998766543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=1.6e-17  Score=190.24  Aligned_cols=205  Identities=26%  Similarity=0.436  Sum_probs=163.7

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      ..|+.|+|++|+|+. ++..+.  .+|+.|+|++|+|+. ++..+.  .+|+.|+|++|+|. .++..+.  .+|++|+|
T Consensus       199 ~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            468999999999996 455543  589999999999994 565553  47999999999998 6666654  58999999


Q ss_pred             cCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC
Q 007628           96 RFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL  175 (595)
Q Consensus        96 s~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i  175 (595)
                      ++|+|+ .++..+. .+|+.|+|++|+|+. ++..+. ..|+.|+|++|+|+. ++..+.   .+|+.|++++|.|++ +
T Consensus       270 s~N~L~-~LP~~l~-~sL~~L~Ls~N~Lt~-LP~~lp-~sL~~L~Ls~N~Lt~-LP~~l~---~sL~~L~Ls~N~Lt~-L  340 (754)
T PRK15370        270 FHNKIS-CLPENLP-EELRYLSVYDNSIRT-LPAHLP-SGITHLNVQSNSLTA-LPETLP---PGLKTLEAGENALTS-L  340 (754)
T ss_pred             cCCccC-ccccccC-CCCcEEECCCCcccc-Ccccch-hhHHHHHhcCCcccc-CCcccc---ccceeccccCCcccc-C
Confidence            999998 5676554 589999999999984 444333 468999999999985 454443   579999999999985 6


Q ss_pred             CCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          176 PPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       176 p~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      +..+.  .+|+.|+|++|+|+ .++..+.  .+|++|+|++|+|+ .++..+.  .+|+.|++++|+|++.
T Consensus       341 P~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~L  403 (754)
T PRK15370        341 PASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRL  403 (754)
T ss_pred             Chhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccC
Confidence            66553  68999999999998 5676553  68999999999999 4566554  3699999999999864

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=3.7e-20  Score=192.75  Aligned_cols=233  Identities=23%  Similarity=0.223  Sum_probs=168.1

Q ss_pred             CCCCceeEEEccCCCCCCC----CchhhcCCCCCcEEEccCCcCCC------CCchhhcCCCCCCEEeccCCcCCCcCch
Q 007628           13 PSLRVVASIDLNHADIAGY----LPPEIGRLTDLAIFHINSNRFCG------VVPSTFRRLKLLYEVDLSNNRFVGKFPK   82 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~----lp~~~~~L~~L~~L~Ls~N~l~~------~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~   82 (595)
                      ..+..|+.|+|+++.|++.    +...+..+.+|+.|+++++.+.+      .+...|.++.+|++|+|++|.+.+....
T Consensus        20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   99 (319)
T cd00116          20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG   99 (319)
T ss_pred             HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence            3455689999999998543    44556677789999999998872      2345678889999999999999866666


Q ss_pred             hcCCCCC---CCEEEccCCCCCCCCCccc----cc--cCCCeeeccCCccccCCCc----cc-CCCCceeEEeeccCCCC
Q 007628           83 LFLSLPK---LKYLDLRFNEFEGSVPSKL----FD--KDLDAIFLNDNRFQFGIPE----NL-GNSPVSVLVFANNDLGG  148 (595)
Q Consensus        83 ~l~~L~~---L~~LdLs~N~l~g~ip~~l----~~--~~L~~L~L~~N~l~~~~p~----~l-~~~~L~~L~L~~N~l~~  148 (595)
                      .|..+.+   |++|+|++|++.+..-..+    ..  .+|+.|+|++|++++....    .+ ....|++|+|++|.+++
T Consensus       100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~  179 (319)
T cd00116         100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD  179 (319)
T ss_pred             HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence            6655555   9999999999874222221    11  5789999999998843222    22 23579999999999886


Q ss_pred             CcCcc----cccccchhhHHHhhccccCCC----CCCccCCCccceEEeccCccccCCCCCCcC-----CCCCccEEEcc
Q 007628          149 CIPGS----IGKMGKTLNEIILMNDNLTGC----LPPQIGMLKNLTVFDVSFNHLQGSLPSSIG-----NMKSLEQLNVA  215 (595)
Q Consensus       149 ~ip~~----l~~l~~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~-----~L~~L~~L~Ls  215 (595)
                      ..-..    +..+ .+|++|+|++|.+.+.    +...+..+.+|++|+|++|.+++.....+.     ...+|++|+|+
T Consensus       180 ~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~  258 (319)
T cd00116         180 AGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS  258 (319)
T ss_pred             HHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEcc
Confidence            43332    2333 4899999999988643    334566778899999999998753222222     24789999999


Q ss_pred             CCcCCC----CCchhccCCCCCcEEEcccccCCCC
Q 007628          216 HNRFTG----VIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       216 ~N~Lsg----~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      +|+|++    .+.+.+..+.+|++||+++|.|+.+
T Consensus       259 ~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         259 CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            999972    3445667778999999999999865

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.73  E-value=1.5e-19  Score=201.17  Aligned_cols=221  Identities=24%  Similarity=0.351  Sum_probs=171.0

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhc--------
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLF--------   84 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l--------   84 (595)
                      ..+.+|+.|++.+|+|.. ++..+.++.+|+.|++.+|++. .++..+..++.|+.|||..|+|. .+++.|        
T Consensus       261 ~~~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l  337 (1081)
T KOG0618|consen  261 GACANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASL  337 (1081)
T ss_pred             HhcccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHH
Confidence            345689999999999854 6778888888888888888888 67778888888999999888887 322211        


Q ss_pred             ------------------CCCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeecc
Q 007628           85 ------------------LSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANN  144 (595)
Q Consensus        85 ------------------~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N  144 (595)
                                        ..+..|++|+|.+|.|++..-..+.. ..||.|+|++|++...-...+.. ..|++|+|++|
T Consensus       338 ~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGN  417 (1081)
T KOG0618|consen  338 NTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGN  417 (1081)
T ss_pred             HHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccc
Confidence                              11344788888899988655444444 89999999999987443333433 57999999999


Q ss_pred             CCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCC-CCCCcCCCCCccEEEccCCcCCCCC
Q 007628          145 DLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGS-LPSSIGNMKSLEQLNVAHNRFTGVI  223 (595)
Q Consensus       145 ~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~-lP~~l~~L~~L~~L~Ls~N~Lsg~i  223 (595)
                      +++ .+++.+.++ ..|++|...+|+|. +++ ++..+..|++|||+.|+|+.. +++.+. -.+|++|||++|.-....
T Consensus       418 kL~-~Lp~tva~~-~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d  492 (1081)
T KOG0618|consen  418 KLT-TLPDTVANL-GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFD  492 (1081)
T ss_pred             hhh-hhhHHHHhh-hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccc
Confidence            998 677888888 78999999999998 777 889999999999999999743 333332 389999999999843344


Q ss_pred             chhccCCCCCcEEEcccc
Q 007628          224 PSSVCQLPNLQNFTYSFN  241 (595)
Q Consensus       224 P~~l~~l~~L~~L~Ls~N  241 (595)
                      -..|..+++|..+++.-|
T Consensus       493 ~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  493 HKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhHHhhhhhheecccC
Confidence            466777777777777766

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=1.9e-19  Score=165.91  Aligned_cols=163  Identities=23%  Similarity=0.399  Sum_probs=141.6

Q ss_pred             hcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCcee
Q 007628           60 FRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSV  138 (595)
Q Consensus        60 ~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~  138 (595)
                      +.++.+++.|.|++|+|+ .++..+..|.+|+.|++++|+|+ .++..+.. .+|++|++.-|++.              
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--------------   92 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--------------   92 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--------------
Confidence            456788899999999999 67778999999999999999998 66655544 56666666666554              


Q ss_pred             EEeeccCCCCCcCcccccccchhhHHHhhccccC-CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCC
Q 007628          139 LVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT-GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHN  217 (595)
Q Consensus       139 L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~-g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N  217 (595)
                                +++.+|+.+ ..|++|||.+|++. ..++..|..|..|+.|.|++|.|. .++..+++|++|+.|.|.+|
T Consensus        93 ----------~lprgfgs~-p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen   93 ----------ILPRGFGSF-PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             ----------cCccccCCC-chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence                      678889888 88999999999987 468889999999999999999999 89999999999999999999


Q ss_pred             cCCCCCchhccCCCCCcEEEcccccCCCCCCccc
Q 007628          218 RFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCT  251 (595)
Q Consensus       218 ~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~  251 (595)
                      .|. .++..++.|.+|++|.+.+|+|+-..++..
T Consensus       161 dll-~lpkeig~lt~lrelhiqgnrl~vlppel~  193 (264)
T KOG0617|consen  161 DLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELA  193 (264)
T ss_pred             chh-hCcHHHHHHHHHHHHhcccceeeecChhhh
Confidence            998 689999999999999999999998777543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.72  E-value=2.8e-19  Score=186.10  Aligned_cols=229  Identities=21%  Similarity=0.226  Sum_probs=170.8

Q ss_pred             CCCceeEEEccCCCCCC------CCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCC---CCEEeccCCcCCC----cC
Q 007628           14 SLRVVASIDLNHADIAG------YLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKL---LYEVDLSNNRFVG----KF   80 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~------~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~---L~~L~Ls~N~Lsg----~l   80 (595)
                      ...+++.|+++++.+.+      .+...|.++.+|+.|+|++|.+.+.....|..+.+   |++|+|++|++.+    .+
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l  128 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL  128 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence            44568999999998873      23456778999999999999998777777777666   9999999999883    33


Q ss_pred             chhcCCC-CCCCEEEccCCCCCCCCCccccc-----cCCCeeeccCCccccCCCcc-----cCCCCceeEEeeccCCCCC
Q 007628           81 PKLFLSL-PKLKYLDLRFNEFEGSVPSKLFD-----KDLDAIFLNDNRFQFGIPEN-----LGNSPVSVLVFANNDLGGC  149 (595)
Q Consensus        81 p~~l~~L-~~L~~LdLs~N~l~g~ip~~l~~-----~~L~~L~L~~N~l~~~~p~~-----l~~~~L~~L~L~~N~l~~~  149 (595)
                      ...+..+ .+|++|+|++|.|++.....+..     .+|++|+|.+|.+++..-..     ..+.+|++|+|++|.|++.
T Consensus       129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence            3456677 89999999999998643332221     57999999999988532221     1235899999999998755


Q ss_pred             cCcc----cccccchhhHHHhhccccCCCCCCccC-----CCccceEEeccCccccC----CCCCCcCCCCCccEEEccC
Q 007628          150 IPGS----IGKMGKTLNEIILMNDNLTGCLPPQIG-----MLKNLTVFDVSFNHLQG----SLPSSIGNMKSLEQLNVAH  216 (595)
Q Consensus       150 ip~~----l~~l~~~L~~L~Ls~N~l~g~ip~~~~-----~L~~L~~LdLs~N~L~g----~lP~~l~~L~~L~~L~Ls~  216 (595)
                      ....    +..+ .+|++|++++|.+.+.....|.     ...+|++|+|++|.|+.    .+.+.+..+.+|++|+|++
T Consensus       209 ~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~  287 (319)
T cd00116         209 GASALAETLASL-KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG  287 (319)
T ss_pred             HHHHHHHHhccc-CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence            4333    3334 6799999999998753222222     23799999999999972    3345566778999999999


Q ss_pred             CcCCCC----CchhccCC-CCCcEEEcccccC
Q 007628          217 NRFTGV----IPSSVCQL-PNLQNFTYSFNYF  243 (595)
Q Consensus       217 N~Lsg~----iP~~l~~l-~~L~~L~Ls~N~L  243 (595)
                      |.|+..    +...+... ..|+.||+.+|.|
T Consensus       288 N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         288 NKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            999854    55556666 7899999998865

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=99.70  E-value=2.2e-16  Score=191.29  Aligned_cols=215  Identities=16%  Similarity=0.185  Sum_probs=144.6

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF   97 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~   97 (595)
                      |+.|++.++.+.. ++..| .+.+|+.|+|.+|+|. .+...+..|.+|++|+|++|+..+.++ .+..+.+|++|+|++
T Consensus       591 Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~  666 (1153)
T PLN03210        591 LRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD  666 (1153)
T ss_pred             cEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence            4444444444432 33333 3567777777777776 455666777788888887765444555 366777888888877


Q ss_pred             CCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628           98 NEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP  176 (595)
Q Consensus        98 N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip  176 (595)
                      |.....++..+.. .+|+.|+|++|...+.++..+...+|+.|+|++|.....+++.    ..+|++|+|.+|.+. .++
T Consensus       667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP  741 (1153)
T PLN03210        667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFP  741 (1153)
T ss_pred             CCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-ccc
Confidence            7655566666544 6788888887766666776666677888888887655444432    245677777777754 233


Q ss_pred             Ccc------------------------------CCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchh
Q 007628          177 PQI------------------------------GMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSS  226 (595)
Q Consensus       177 ~~~------------------------------~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~  226 (595)
                      ..+                              ..+.+|+.|+|++|...+.++.+|++|.+|+.|+|++|...+.++..
T Consensus       742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~  821 (1153)
T PLN03210        742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG  821 (1153)
T ss_pred             ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence            221                              11247889999999888889999999999999999998655566655


Q ss_pred             ccCCCCCcEEEccccc
Q 007628          227 VCQLPNLQNFTYSFNY  242 (595)
Q Consensus       227 l~~l~~L~~L~Ls~N~  242 (595)
                      + ++.+|+.|+|++|.
T Consensus       822 ~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        822 I-NLESLESLDLSGCS  836 (1153)
T ss_pred             C-CccccCEEECCCCC
Confidence            4 56666666666653

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.68  E-value=2.9e-16  Score=179.32  Aligned_cols=114  Identities=19%  Similarity=0.335  Sum_probs=76.7

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF   97 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~   97 (595)
                      -+.|||++++|+. ++..|.  .+|+.|+|.+|+|+. ++.   .+.+|++|+|++|+|+. ++..   ..+|+.|+|++
T Consensus       203 ~~~LdLs~~~Lts-LP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~  271 (788)
T PRK15387        203 NAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFS  271 (788)
T ss_pred             CcEEEcCCCCCCc-CCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeeccC
Confidence            5688999999985 677775  479999999999995 443   36889999999999994 4543   35677777777


Q ss_pred             CCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCC
Q 007628           98 NEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGG  148 (595)
Q Consensus        98 N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~  148 (595)
                      |.|+ .++..  ..+|+.|+|.+|+++. ++..  ..+|++|+|++|+|++
T Consensus       272 N~L~-~Lp~l--p~~L~~L~Ls~N~Lt~-LP~~--p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        272 NPLT-HLPAL--PSGLCKLWIFGNQLTS-LPVL--PPGLQELSVSDNQLAS  316 (788)
T ss_pred             Cchh-hhhhc--hhhcCEEECcCCcccc-cccc--ccccceeECCCCcccc
Confidence            7766 33331  1455666666666552 2221  1345666666665553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.64  E-value=1.1e-17  Score=178.14  Aligned_cols=178  Identities=28%  Similarity=0.478  Sum_probs=116.2

Q ss_pred             CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeee
Q 007628           38 RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIF  117 (595)
Q Consensus        38 ~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~  117 (595)
                      .|.+...+||+.|++. +++.++..|..|+.|.|..|.|. .++..+.+|..|.+|||+.|++. .++..+         
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l---------  140 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGL---------  140 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhh---------
Confidence            3555556666666666 56666666666666666666666 56666666666666666666665 444444         


Q ss_pred             ccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccC
Q 007628          118 LNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG  197 (595)
Q Consensus       118 L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g  197 (595)
                                    +...|++|.+++|+++ .+++.|+ +...|..|+.+.|++. .++..++.|.+|+.|+++.|++. 
T Consensus       141 --------------C~lpLkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-  202 (722)
T KOG0532|consen  141 --------------CDLPLKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-  202 (722)
T ss_pred             --------------hcCcceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-
Confidence                          4445555555555554 5666666 3366777777777776 56666777777777777777776 


Q ss_pred             CCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628          198 SLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP  247 (595)
Q Consensus       198 ~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~  247 (595)
                      .++++++.| .|..||+++|+|+ .|+..|.+|.+|++|-|.+|-|..-.
T Consensus       203 ~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  203 DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCCh
Confidence            566666644 4677777777776 66777777777777777777766543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.54  E-value=4.9e-16  Score=165.66  Aligned_cols=174  Identities=25%  Similarity=0.400  Sum_probs=135.7

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .|.....+||+.|.+.. ++.+++.|..|+.|.|.+|.|. .++..+++|..|++|||+.|+|+ .++..+..|. |+.|
T Consensus        73 ~ltdt~~aDlsrNR~~e-lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSE-LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             cccchhhhhcccccccc-CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            45667789999999986 7889999999999999999999 78999999999999999999999 7788787776 9999


Q ss_pred             EccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           94 DLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      .+++|+++ .++..+.. ..|..|+.+.|++.                        .++..++.+ .+|+.|.+..|++.
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~------------------------slpsql~~l-~slr~l~vrRn~l~  202 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ------------------------SLPSQLGYL-TSLRDLNVRRNHLE  202 (722)
T ss_pred             EEecCccc-cCCcccccchhHHHhhhhhhhhh------------------------hchHHhhhH-HHHHHHHHhhhhhh
Confidence            99999998 55555443 45555555555554                        455555555 56777777777776


Q ss_pred             CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCC
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFT  220 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Ls  220 (595)
                       .+++++..| .|..||+++|++. .|+-.|.+|+.|++|.|.+|-|.
T Consensus       203 -~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  203 -DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             -hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence             556666633 5777777777777 67777777777777777777776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.49  E-value=4.1e-14  Score=152.54  Aligned_cols=196  Identities=31%  Similarity=0.384  Sum_probs=122.1

Q ss_pred             EEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCC-CCCEEEccCCCCCCCCCcccc-ccCCCeeeccCC
Q 007628           44 IFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLP-KLKYLDLRFNEFEGSVPSKLF-DKDLDAIFLNDN  121 (595)
Q Consensus        44 ~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~-~L~~LdLs~N~l~g~ip~~l~-~~~L~~L~L~~N  121 (595)
                      .|++++|++.. ....+..++.|+.|++.+|+++ .+......+. +|++||+++|+|. .++..+. ..+|+.|++.+|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            46666666532 2234455566666677666666 4444455553 6667777776666 3332222 266666777666


Q ss_pred             ccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCC
Q 007628          122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPS  201 (595)
Q Consensus       122 ~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~  201 (595)
                      ++............|+.|++++|++. .++..+..+ ..|++|++++|.+. .+...+.++.+|..|.+.+|++. .+..
T Consensus       174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~-~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~  249 (394)
T COG4886         174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELL-SALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE  249 (394)
T ss_pred             hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhh-hhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence            66633222224556667777777766 444444333 55778888877544 34556677777777777777776 4466


Q ss_pred             CcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          202 SIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       202 ~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      .++.+.+|++|++++|+++..- . +..+.+|+.|++++|.+.....
T Consensus       250 ~~~~l~~l~~L~~s~n~i~~i~-~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         250 SIGNLSNLETLDLSNNQISSIS-S-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             hhccccccceeccccccccccc-c-ccccCccCEEeccCccccccch
Confidence            6777777888888888887432 2 7777788888888877765543

>PLN03150 hypothetical protein; Provisional

Probab=99.47  E-value=1.6e-13  Score=156.22  Aligned_cols=123  Identities=24%  Similarity=0.422  Sum_probs=105.4

Q ss_pred             CceecccCCCCCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcC
Q 007628            1 MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKF   80 (595)
Q Consensus         1 ~gv~C~~~~~~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~l   80 (595)
                      .||.|....  ......|+.|+|++|++.+.++..|++|.+|+.|+|++|+|.|.++..|++|.+|+.|||++|+|+|.+
T Consensus       405 ~Gv~C~~~~--~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~i  482 (623)
T PLN03150        405 SGADCQFDS--TKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI  482 (623)
T ss_pred             ccceeeccC--CCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCC
Confidence            478885321  122336999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhcCCCCCCCEEEccCCCCCCCCCccccc--cCCCeeeccCCcccc
Q 007628           81 PKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQF  125 (595)
Q Consensus        81 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~  125 (595)
                      ++.|.+|.+|++|||++|+|+|.++..+..  .++..+++.+|...+
T Consensus       483 P~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             chHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence            999999999999999999999999987754  345566777666543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.40  E-value=2.4e-13  Score=146.53  Aligned_cols=200  Identities=31%  Similarity=0.494  Sum_probs=156.0

Q ss_pred             EEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCC-CCCEEeccCCcCCCcCchhcCCCCCCCEEEccCC
Q 007628           20 SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLK-LLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN   98 (595)
Q Consensus        20 ~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~-~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N   98 (595)
                      .|++..+.+... ...+..+..++.|++.+|.|+ .+......+. +|++|+|++|+|. .++..++++.+|+.|+|++|
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            477777776432 245666788999999999999 5667777775 9999999999998 55567889999999999999


Q ss_pred             CCCCCCCccc-cccCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628           99 EFEGSVPSKL-FDKDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP  176 (595)
Q Consensus        99 ~l~g~ip~~l-~~~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip  176 (595)
                      ++. .++... ...+|+.|++++|++. .++..+.. ..|++|.+++|.+. .+...+.++ ..+..|.+.+|++. .+.
T Consensus       174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~-~~l~~l~l~~n~~~-~~~  248 (394)
T COG4886         174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNL-KNLSGLELSNNKLE-DLP  248 (394)
T ss_pred             hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhc-ccccccccCCceee-ecc
Confidence            998 666655 5589999999999988 45555433 45999999999643 344555555 67788888888876 446


Q ss_pred             CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccC
Q 007628          177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ  229 (595)
Q Consensus       177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~  229 (595)
                      ..++.+.+|+.|++++|.++ .+.. ++.+.+|+.|++++|.++..+...+..
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~  299 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIALL  299 (394)
T ss_pred             chhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhhhcc
Confidence            78888999999999999998 4444 899999999999999998765554433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.40  E-value=2.9e-14  Score=148.34  Aligned_cols=209  Identities=23%  Similarity=0.261  Sum_probs=144.7

Q ss_pred             cCCCCCcEEEccCCcCCCCCc-hhhcCCCCCCEEeccCCcCCCc--CchhcCCCCCCCEEEccCCCCCCCCCccccc--c
Q 007628           37 GRLTDLAIFHINSNRFCGVVP-STFRRLKLLYEVDLSNNRFVGK--FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--K  111 (595)
Q Consensus        37 ~~L~~L~~L~Ls~N~l~~~lp-~~~~~L~~L~~L~Ls~N~Lsg~--lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~--~  111 (595)
                      .++++|+++.|++.++....- .....|.+++.|||+.|-|...  +-....+|++|+.|+|+.|+|.-.+......  .
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            468889999999988774322 4677899999999999988743  2345678999999999999987444333322  6


Q ss_pred             CCCeeeccCCccccCCCcc--cCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC-CCccCCCccceEE
Q 007628          112 DLDAIFLNDNRFQFGIPEN--LGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL-PPQIGMLKNLTVF  188 (595)
Q Consensus       112 ~L~~L~L~~N~l~~~~p~~--l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i-p~~~~~L~~L~~L  188 (595)
                      .|+.|.|+.|.|+..--..  +....|+.|+|..|+..+........+ +.|++|+|++|++.... -..++.|.+|+.|
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~-~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL-QTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh-hHHhhccccCCcccccccccccccccchhhh
Confidence            7888999988887332222  233578888888886443433444334 78899999988876321 2346678888888


Q ss_pred             eccCccccCC-CCCC-----cCCCCCccEEEccCCcCCCC-CchhccCCCCCcEEEcccccCCCC
Q 007628          189 DVSFNHLQGS-LPSS-----IGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       189 dLs~N~L~g~-lP~~-----l~~L~~L~~L~Ls~N~Lsg~-iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      +|+.|.+... +++.     ...+.+|++|+++.|++... --..+..+.+|+.|.+..|.|+-.
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            9888887632 1222     35567889999999988532 114455667778888888887654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.40  E-value=1.1e-14  Score=148.03  Aligned_cols=229  Identities=17%  Similarity=0.226  Sum_probs=162.5

Q ss_pred             CCCceeEEEccCCCCCCC----CchhhcCCCCCcEEEccCC---cCCCCCchh-------hcCCCCCCEEeccCCcCCCc
Q 007628           14 SLRVVASIDLNHADIAGY----LPPEIGRLTDLAIFHINSN---RFCGVVPST-------FRRLKLLYEVDLSNNRFVGK   79 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~----lp~~~~~L~~L~~L~Ls~N---~l~~~lp~~-------~~~L~~L~~L~Ls~N~Lsg~   79 (595)
                      .+..++.|+|++|.|...    +...+.+.++|+..+|++-   ++...++..       +..+.+|++||||+|-|.-.
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            456899999999987632    5566778889999998864   333344433       44566899999999988733


Q ss_pred             ----CchhcCCCCCCCEEEccCCCCCCCCCccc-----c----------ccCCCeeeccCCccccCCCcc----cCC-CC
Q 007628           80 ----FPKLFLSLPKLKYLDLRFNEFEGSVPSKL-----F----------DKDLDAIFLNDNRFQFGIPEN----LGN-SP  135 (595)
Q Consensus        80 ----lp~~l~~L~~L~~LdLs~N~l~g~ip~~l-----~----------~~~L~~L~L~~N~l~~~~p~~----l~~-~~  135 (595)
                          +-+.|+++..|++|.|.||.+. .+-...     +          ..+|+.+...+|++...-...    +.. ..
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~  186 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPT  186 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccc
Confidence                3456778899999999999986 222211     1          147888999999887443322    222 47


Q ss_pred             ceeEEeeccCCCCC----cCcccccccchhhHHHhhccccCCC----CCCccCCCccceEEeccCccccCCCCCCc----
Q 007628          136 VSVLVFANNDLGGC----IPGSIGKMGKTLNEIILMNDNLTGC----LPPQIGMLKNLTVFDVSFNHLQGSLPSSI----  203 (595)
Q Consensus       136 L~~L~L~~N~l~~~----ip~~l~~l~~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~L~g~lP~~l----  203 (595)
                      |+.+.+..|.|...    +...|..+ .+|++|||.+|.|+..    +.+.+..|++|++|+|++|.|...--.+|    
T Consensus       187 leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  187 LEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             cceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            88899999987643    23444555 7899999999988743    44567778899999999999875433333    


Q ss_pred             -CCCCCccEEEccCCcCCCC----CchhccCCCCCcEEEcccccCC
Q 007628          204 -GNMKSLEQLNVAHNRFTGV----IPSSVCQLPNLQNFTYSFNYFT  244 (595)
Q Consensus       204 -~~L~~L~~L~Ls~N~Lsg~----iP~~l~~l~~L~~L~Ls~N~Ls  244 (595)
                       ....+|++|.|.+|.|+..    +-..+.....|+.|+|++|+|.
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence             2356899999999998642    3344556788999999999994

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.35  E-value=9.3e-14  Score=150.99  Aligned_cols=128  Identities=20%  Similarity=0.157  Sum_probs=61.2

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      +..++.++|+.|.|.. +-..++.+++|+.|+|.+|+|..+ ...+..|.+|++|+|++|+|+.+.  .+..|..|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence            3444445555555544 223355555555555555555532 222455555555555555555332  234444455555


Q ss_pred             ccCCCCCCCCCccccccCCCeeeccCCccccCCCc-ccCCCCceeEEeeccCCC
Q 007628           95 LRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPE-NLGNSPVSVLVFANNDLG  147 (595)
Q Consensus        95 Ls~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~-~l~~~~L~~L~L~~N~l~  147 (595)
                      +++|.|+ .+........|+.++|.+|++...-.+ .-.+..++.+++.+|.+.
T Consensus       147 l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  147 LSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             eccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            5555555 333333335555555555555433221 122334444555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.32  E-value=1.8e-13  Score=148.73  Aligned_cols=219  Identities=21%  Similarity=0.247  Sum_probs=152.5

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      .++.+|+.++.+.+.... ...+..|+.|+|+.|.|.. +-..+..+.+|+.|+|.+|+|.++ ...+..|.+|++|||+
T Consensus        50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls  126 (414)
T KOG0531|consen   50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLS  126 (414)
T ss_pred             hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecc
Confidence            344555555544332211 1567788888899999884 456688999999999999999944 3337889999999999


Q ss_pred             CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628           97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP  176 (595)
Q Consensus        97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip  176 (595)
                      +|+|+ .+........|+.|++.+|.+.. +..+-....|+.+++++|++...-...+..+ ..|+.|++.+|.+...  
T Consensus       127 ~N~I~-~i~~l~~l~~L~~L~l~~N~i~~-~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~-~~l~~l~l~~n~i~~i--  201 (414)
T KOG0531|consen  127 FNKIT-KLEGLSTLTLLKELNLSGNLISD-ISGLESLKSLKLLDLSYNRIVDIENDELSEL-ISLEELDLGGNSIREI--  201 (414)
T ss_pred             ccccc-cccchhhccchhhheeccCcchh-ccCCccchhhhcccCCcchhhhhhhhhhhhc-cchHHHhccCCchhcc--
Confidence            99998 55555555679999999999873 2333336789999999999986554212334 6899999999988733  


Q ss_pred             CccCCCccceEEeccCccccCCCCCCcCCCC--CccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMK--SLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~--~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      ..+..+..+..+++..|.++ .+- .+..+.  +|+.|++++|.+.. +...+..+..++.|++.+|++...
T Consensus       202 ~~~~~~~~l~~~~l~~n~i~-~~~-~l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  202 EGLDLLKKLVLLSLLDNKIS-KLE-GLNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             cchHHHHHHHHhhcccccce-ecc-CcccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc
Confidence            33444556666677888776 221 222223  37888888888763 225566677788888888877653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=8.2e-13  Score=137.70  Aligned_cols=186  Identities=24%  Similarity=0.216  Sum_probs=141.9

Q ss_pred             cCCCCCCEEeccCCcCCCcCc-hhcCCCCCCCEEEccCCCCCCCCCccc--cc--cCCCeeeccCCccccCCCcccC--C
Q 007628           61 RRLKLLYEVDLSNNRFVGKFP-KLFLSLPKLKYLDLRFNEFEGSVPSKL--FD--KDLDAIFLNDNRFQFGIPENLG--N  133 (595)
Q Consensus        61 ~~L~~L~~L~Ls~N~Lsg~lp-~~l~~L~~L~~LdLs~N~l~g~ip~~l--~~--~~L~~L~L~~N~l~~~~p~~l~--~  133 (595)
                      .++..|+++.|.+..+....- +....|.+++.|||+.|.|. .+...+  ..  .+|+.|+|+.|++.........  .
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-hHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            578889999999998762221 46778999999999999887 332221  11  7899999999999855444333  3


Q ss_pred             CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCC-CCCCcCCCCCccEE
Q 007628          134 SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGS-LPSSIGNMKSLEQL  212 (595)
Q Consensus       134 ~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~-lP~~l~~L~~L~~L  212 (595)
                      ..|+.|.|+.|+|+..--..+.....+|+.|+|..|+..++.......++.|++|||++|+|... .--.++.|..|+.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            67899999999999766566666668999999999975556566667789999999999998632 12457889999999


Q ss_pred             EccCCcCCCC-Cchh-----ccCCCCCcEEEcccccCCCCC
Q 007628          213 NVAHNRFTGV-IPSS-----VCQLPNLQNFTYSFNYFTGEP  247 (595)
Q Consensus       213 ~Ls~N~Lsg~-iP~~-----l~~l~~L~~L~Ls~N~Lsg~~  247 (595)
                      +++.|.|... +++.     ...+.+|+.|++..|++..|-
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR  317 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCcccccc
Confidence            9999998753 2222     456789999999999997653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.27  E-value=1.6e-13  Score=139.49  Aligned_cols=223  Identities=21%  Similarity=0.276  Sum_probs=160.1

Q ss_pred             ccCCCCCCCCchhhcCCCCCcEEEccCCcCCC----CCchhhcCCCCCCEEeccCCcCCCc-----------CchhcCCC
Q 007628           23 LNHADIAGYLPPEIGRLTDLAIFHINSNRFCG----VVPSTFRRLKLLYEVDLSNNRFVGK-----------FPKLFLSL   87 (595)
Q Consensus        23 Ls~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~----~lp~~~~~L~~L~~L~Ls~N~Lsg~-----------lp~~l~~L   87 (595)
                      |....-.+.+-..+..+..++.|+|++|.|..    .+...|.+.++|+..++++-. +|.           +...+..+
T Consensus        13 l~t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~   91 (382)
T KOG1909|consen   13 LETEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGC   91 (382)
T ss_pred             eehHhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcC
Confidence            33333334455667789999999999999974    355667888999999998763 332           23345567


Q ss_pred             CCCCEEEccCCCCCCCCCccccc-----cCCCeeeccCCccccCCCcc-------------cC-CCCceeEEeeccCCCC
Q 007628           88 PKLKYLDLRFNEFEGSVPSKLFD-----KDLDAIFLNDNRFQFGIPEN-------------LG-NSPVSVLVFANNDLGG  148 (595)
Q Consensus        88 ~~L~~LdLs~N~l~g~ip~~l~~-----~~L~~L~L~~N~l~~~~p~~-------------l~-~~~L~~L~L~~N~l~~  148 (595)
                      .+|++||||+|.|.-.....+..     .+|++|+|.+|.+.-.-...             +. ...|+++...+|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            79999999999998555544432     68999999999876221111             11 2468999999999986


Q ss_pred             CcCcccccc---cchhhHHHhhccccCCC----CCCccCCCccceEEeccCccccCC----CCCCcCCCCCccEEEccCC
Q 007628          149 CIPGSIGKM---GKTLNEIILMNDNLTGC----LPPQIGMLKNLTVFDVSFNHLQGS----LPSSIGNMKSLEQLNVAHN  217 (595)
Q Consensus       149 ~ip~~l~~l---~~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~L~g~----lP~~l~~L~~L~~L~Ls~N  217 (595)
                      .....|...   ...|+++.+..|.|...    +...|..|++|++|||++|.|+..    +-+.+..+.+|++|+|++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            544444322   25788888999987632    345677899999999999999733    4456778889999999999


Q ss_pred             cCCCCCc----hhc-cCCCCCcEEEcccccCCCC
Q 007628          218 RFTGVIP----SSV-CQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       218 ~Lsg~iP----~~l-~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      .|...--    +.| ....+|++|+|.+|.++.+
T Consensus       252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d  285 (382)
T KOG1909|consen  252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRD  285 (382)
T ss_pred             ccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence            9975322    222 3367899999999999764

>PLN03150 hypothetical protein; Provisional

Probab=99.26  E-value=4.5e-12  Score=144.34  Aligned_cols=109  Identities=31%  Similarity=0.578  Sum_probs=85.2

Q ss_pred             ceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEcc
Q 007628          136 VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVA  215 (595)
Q Consensus       136 L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls  215 (595)
                      ++.|+|++|.+.|.++..|+++ .+|+.|+|++|+|.|.++..|+.|.+|+.|||++|+|+|.+++.|++|.+|++|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCC-CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            6677888888888888888777 778888888888888888888888888888888888888888888888888888888


Q ss_pred             CCcCCCCCchhccCC-CCCcEEEcccccCCC
Q 007628          216 HNRFTGVIPSSVCQL-PNLQNFTYSFNYFTG  245 (595)
Q Consensus       216 ~N~Lsg~iP~~l~~l-~~L~~L~Ls~N~Lsg  245 (595)
                      +|+|+|.++..+.++ .++..|++.+|...+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcccc
Confidence            888888888777653 456777777776544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.25  E-value=6.2e-13  Score=132.58  Aligned_cols=130  Identities=18%  Similarity=0.252  Sum_probs=82.8

Q ss_pred             CCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEec
Q 007628          112 DLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDV  190 (595)
Q Consensus       112 ~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdL  190 (595)
                      .|+.|||++|.++. +.+...+ ..+++|++++|+|...  +++..+ .+|++|||++|.++. +-.+-.+|-|++.|+|
T Consensus       285 ~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L-~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  285 ELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTV--QNLAEL-PQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhccccccchhh-hhhhhhhccceeEEeccccceeee--hhhhhc-ccceEeecccchhHh-hhhhHhhhcCEeeeeh
Confidence            45555555555542 2222222 4566666666666532  235555 677788888887763 3344455677888888


Q ss_pred             cCccccCCCCCCcCCCCCccEEEccCCcCCCCC-chhccCCCCCcEEEcccccCCCCCC
Q 007628          191 SFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI-PSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       191 s~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i-P~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      ++|.|.. + ..++.|-+|..||+++|+|.... -..+++|..|+.|.|.+|-|.+.+.
T Consensus       360 a~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  360 AQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            8888762 2 34667777888888888886421 2457778888888888888877654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.17  E-value=2.1e-12  Score=128.80  Aligned_cols=132  Identities=22%  Similarity=0.280  Sum_probs=95.7

Q ss_pred             CCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHH
Q 007628           86 SLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEI  164 (595)
Q Consensus        86 ~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L  164 (595)
                      ..+.|++||||+|.|+ .|.+.+.. ..++.|+|+.|.+...-. ...+.+|..|+|++|.++.+ .++-.++ -+++.|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~-~Gwh~KL-GNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC-VGWHLKL-GNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhh-hhhHhhh-cCEeee
Confidence            3466888888888887 56555544 778888888888763322 33446788888888887633 2333333 567889


Q ss_pred             HhhccccCCCCCCccCCCccceEEeccCccccCC-CCCCcCCCCCccEEEccCCcCCCCC
Q 007628          165 ILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGS-LPSSIGNMKSLEQLNVAHNRFTGVI  223 (595)
Q Consensus       165 ~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~-lP~~l~~L~~L~~L~Ls~N~Lsg~i  223 (595)
                      .|++|.|..  -..+++|-+|..|||++|+|... --..|++|..|++|.|.+|-|.+..
T Consensus       358 ~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  358 KLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             ehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            999988752  24567788999999999999732 2356899999999999999998653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.17  E-value=2.3e-11  Score=141.97  Aligned_cols=177  Identities=18%  Similarity=0.202  Sum_probs=119.7

Q ss_pred             CceeEEEccCCC--CCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           16 RVVASIDLNHAD--IAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        16 ~~L~~LdLs~n~--i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .+|++|-+.+|.  +..+..+.|..|+.|++|||++|.--+.+++.+++|.+|++|+|++..|. .++..|.+|++|.+|
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L  623 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL  623 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence            357788888885  66666667889999999999998877789999999999999999999999 889999999999999


Q ss_pred             EccCCCCCCCCCcccc-ccCCCeeeccCCccccCC--Cccc-CCCCceeEEeeccCCCCCcCccc---ccccchhhHHHh
Q 007628           94 DLRFNEFEGSVPSKLF-DKDLDAIFLNDNRFQFGI--PENL-GNSPVSVLVFANNDLGGCIPGSI---GKMGKTLNEIIL  166 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~-~~~L~~L~L~~N~l~~~~--p~~l-~~~~L~~L~L~~N~l~~~ip~~l---~~l~~~L~~L~L  166 (595)
                      ||.++.....+..... ..+|++|.|.........  -.++ .+..|+.|.+.....  .+-..+   .++....+.+.+
T Consensus       624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~~  701 (889)
T KOG4658|consen  624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLSI  701 (889)
T ss_pred             ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhhh
Confidence            9998876656655555 488999998776532211  1122 113344444433222  111111   122122233333


Q ss_pred             hccccCCCCCCccCCCccceEEeccCcccc
Q 007628          167 MNDNLTGCLPPQIGMLKNLTVFDVSFNHLQ  196 (595)
Q Consensus       167 s~N~l~g~ip~~~~~L~~L~~LdLs~N~L~  196 (595)
                      .++... .....++.|.+|+.|.+.++.+.
T Consensus       702 ~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  702 EGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             cccccc-eeecccccccCcceEEEEcCCCc
Confidence            232222 34456777888888888888775

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=1.9e-11  Score=116.63  Aligned_cols=74  Identities=26%  Similarity=0.328  Sum_probs=14.6

Q ss_pred             EccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhc-CCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCC
Q 007628           22 DLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR-RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEF  100 (595)
Q Consensus        22 dLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~-~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l  100 (595)
                      +|+.+.|..+  ..+.+..++++|+|++|+|+.+  +.++ .|.+|+.|||++|+|+.+  +.|..|.+|++|+|++|+|
T Consensus         3 ~lt~~~i~~~--~~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I   76 (175)
T PF14580_consen    3 RLTANMIEQI--AQYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRI   76 (175)
T ss_dssp             -------------------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS--
T ss_pred             cccccccccc--cccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCC
Confidence            3444545432  2344555678888888888743  3454 577788888888887743  2466777788888888877


Q ss_pred             C
Q 007628          101 E  101 (595)
Q Consensus       101 ~  101 (595)
                      +
T Consensus        77 ~   77 (175)
T PF14580_consen   77 S   77 (175)
T ss_dssp             -
T ss_pred             C
Confidence            6

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=99.09  E-value=2.5e-12  Score=126.86  Aligned_cols=86  Identities=24%  Similarity=0.291  Sum_probs=49.3

Q ss_pred             CceeEEEccCCCCCCC----CchhhcCCCCCcEEEccCCcCC---CC-------CchhhcCCCCCCEEeccCCcCCCcCc
Q 007628           16 RVVASIDLNHADIAGY----LPPEIGRLTDLAIFHINSNRFC---GV-------VPSTFRRLKLLYEVDLSNNRFVGKFP   81 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~----lp~~~~~L~~L~~L~Ls~N~l~---~~-------lp~~~~~L~~L~~L~Ls~N~Lsg~lp   81 (595)
                      ..++.+||++|.|...    +.+.|.+-++|++.++++-...   +.       +..++.+|.+|+.++|++|-|....+
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4566777777766533    3344555666666666654322   11       12234566777777777776664433


Q ss_pred             ----hhcCCCCCCCEEEccCCCCC
Q 007628           82 ----KLFLSLPKLKYLDLRFNEFE  101 (595)
Q Consensus        82 ----~~l~~L~~L~~LdLs~N~l~  101 (595)
                          +.+++-..|++|.|+||.+.
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCC
Confidence                34455566777777777664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=99.03  E-value=4.2e-12  Score=138.91  Aligned_cols=157  Identities=20%  Similarity=0.313  Sum_probs=89.0

Q ss_pred             chhcCCCCCCCEEEccCCCCCCCCCccc-cccCCCeeeccCC---------ccccCCCcccCCCCceeEEeeccCCCCCc
Q 007628           81 PKLFLSLPKLKYLDLRFNEFEGSVPSKL-FDKDLDAIFLNDN---------RFQFGIPENLGNSPVSVLVFANNDLGGCI  150 (595)
Q Consensus        81 p~~l~~L~~L~~LdLs~N~l~g~ip~~l-~~~~L~~L~L~~N---------~l~~~~p~~l~~~~L~~L~L~~N~l~~~i  150 (595)
                      +-.|..+++|+.|.|.++.|.. .-... +...|++|...+.         ...|++-..+....|...+++.|++. .+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~m  179 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LM  179 (1096)
T ss_pred             CceeccccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hH
Confidence            4456667778888887777653 11111 1133444432211         11133333333345666677777765 23


Q ss_pred             CcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCC-CcCCCCCccEEEccCCcCCCCCchhccC
Q 007628          151 PGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPS-SIGNMKSLEQLNVAHNRFTGVIPSSVCQ  229 (595)
Q Consensus       151 p~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~-~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~  229 (595)
                      ..++.-+ ..|+.|+|++|+++.+.  .+..|.+|++|||++|.|+ .++. .+..++ |..|+|+||.|+..  ..+.+
T Consensus       180 D~SLqll-~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~  252 (1096)
T KOG1859|consen  180 DESLQLL-PALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIEN  252 (1096)
T ss_pred             HHHHHHH-HHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence            3333333 66777777777777553  6666777777777777776 3333 233333 77777777777633  45666


Q ss_pred             CCCCcEEEcccccCCCC
Q 007628          230 LPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       230 l~~L~~L~Ls~N~Lsg~  246 (595)
                      |.+|+.|||++|.|.+.
T Consensus       253 LksL~~LDlsyNll~~h  269 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEH  269 (1096)
T ss_pred             hhhhhccchhHhhhhcc
Confidence            77777777777766653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.99  E-value=3.2e-12  Score=139.83  Aligned_cols=107  Identities=19%  Similarity=0.165  Sum_probs=65.5

Q ss_pred             ceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEcc
Q 007628          136 VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVA  215 (595)
Q Consensus       136 L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls  215 (595)
                      |+.|+|++|+|+.+-  .|..+ ..|++|||++|.++..---....|+ |+.|+|++|.|+..  ..|.+|++|+.|||+
T Consensus       189 le~LnLshNk~~~v~--~Lr~l-~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDls  262 (1096)
T KOG1859|consen  189 LESLNLSHNKFTKVD--NLRRL-PKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLS  262 (1096)
T ss_pred             hhhhccchhhhhhhH--HHHhc-ccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchh
Confidence            344444444444322  44444 5677777777777643322333343 88888888887632  346677888888888


Q ss_pred             CCcCCCCC-chhccCCCCCcEEEcccccCCCCCC
Q 007628          216 HNRFTGVI-PSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       216 ~N~Lsg~i-P~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      +|-|.+-- -.-++.|..|++|+|.+|-|.+...
T Consensus       263 yNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~  296 (1096)
T KOG1859|consen  263 YNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW  296 (1096)
T ss_pred             HhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence            88776531 1345666777888888887776543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.98  E-value=4.1e-11  Score=118.34  Aligned_cols=221  Identities=19%  Similarity=0.223  Sum_probs=151.3

Q ss_pred             CCCCCCchhhcCCCCCcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCC---Cc-------CchhcCCCCCCCE
Q 007628           27 DIAGYLPPEIGRLTDLAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFV---GK-------FPKLFLSLPKLKY   92 (595)
Q Consensus        27 ~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Ls---g~-------lp~~l~~L~~L~~   92 (595)
                      ++.+. -+.+..+..++.+||++|-|..+    +...|.+-.+|+..++++-...   ..       +-..+.+|.+|+.
T Consensus        18 Dvk~v-~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~   96 (388)
T COG5238          18 DVKGV-VEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQK   96 (388)
T ss_pred             hhhHH-HHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence            34443 34566689999999999999754    4455677789999988875332   11       2345678999999


Q ss_pred             EEccCCCCCCCCCccccc-----cCCCeeeccCCccccC----CCccc----------CCCCceeEEeeccCCCCCcCcc
Q 007628           93 LDLRFNEFEGSVPSKLFD-----KDLDAIFLNDNRFQFG----IPENL----------GNSPVSVLVFANNDLGGCIPGS  153 (595)
Q Consensus        93 LdLs~N~l~g~ip~~l~~-----~~L~~L~L~~N~l~~~----~p~~l----------~~~~L~~L~L~~N~l~~~ip~~  153 (595)
                      +|||+|.|.-.++..+..     ..|++|.|++|.+.-.    +...+          ....|+.+.+..|+|...-...
T Consensus        97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~  176 (388)
T COG5238          97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL  176 (388)
T ss_pred             eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence            999999998777766544     6899999999987522    22111          1246888999999987433322


Q ss_pred             cccc---cchhhHHHhhccccCCC-----CCCccCCCccceEEeccCccccCC----CCCCcCCCCCccEEEccCCcCCC
Q 007628          154 IGKM---GKTLNEIILMNDNLTGC-----LPPQIGMLKNLTVFDVSFNHLQGS----LPSSIGNMKSLEQLNVAHNRFTG  221 (595)
Q Consensus       154 l~~l---~~~L~~L~Ls~N~l~g~-----ip~~~~~L~~L~~LdLs~N~L~g~----lP~~l~~L~~L~~L~Ls~N~Lsg  221 (595)
                      +..+   -..|+++.+..|.|.-.     +-..+..+.+|++|||++|.|+-.    +-.+++....|++|.|.+|.|+.
T Consensus       177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence            2221   13677788888887633     112344578999999999998732    34456666778999999999875


Q ss_pred             CCch----hcc--CCCCCcEEEcccccCCCCCC
Q 007628          222 VIPS----SVC--QLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       222 ~iP~----~l~--~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      .--+    .|.  ...+|..|-+.+|.+.|.+-
T Consensus       257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i  289 (388)
T COG5238         257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGII  289 (388)
T ss_pred             ccHHHHHHHhhhhcCCCccccccchhhhcCcee
Confidence            3222    222  24678888899998877544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=2.9e-10  Score=113.76  Aligned_cols=90  Identities=22%  Similarity=0.230  Sum_probs=40.2

Q ss_pred             CCCCCceeEEEccCCCCCCCCc-hhh-cCCCCCcEEEccCCcCCC--CCchhhcCCCCCCEEeccCCcCCCcCchhcCCC
Q 007628           12 SPSLRVVASIDLNHADIAGYLP-PEI-GRLTDLAIFHINSNRFCG--VVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSL   87 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp-~~~-~~L~~L~~L~Ls~N~l~~--~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L   87 (595)
                      ...++.++.|.|.+++|..+-. ..| ..++++++|||.+|.|++  ++-..+.+|..|++|+|+.|.|...|...=..+
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~  120 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPL  120 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccc
Confidence            3344444455555554443210 111 134445555555555553  233334455555555555555553332221334


Q ss_pred             CCCCEEEccCCCCC
Q 007628           88 PKLKYLDLRFNEFE  101 (595)
Q Consensus        88 ~~L~~LdLs~N~l~  101 (595)
                      ++|++|.|.+..|.
T Consensus       121 ~nl~~lVLNgT~L~  134 (418)
T KOG2982|consen  121 KNLRVLVLNGTGLS  134 (418)
T ss_pred             cceEEEEEcCCCCC
Confidence            45555555555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.94  E-value=7.5e-10  Score=105.66  Aligned_cols=83  Identities=25%  Similarity=0.341  Sum_probs=29.1

Q ss_pred             CCceeEEEccCCCCCCCCchhhc-CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           15 LRVVASIDLNHADIAGYLPPEIG-RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~-~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      ...++.|+|++|+|+.+  +.++ .+.+|+.|||++|+|+.+  +.|..|.+|++|+|++|+|+.+.......|.+|++|
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            34578999999999975  3565 688999999999999965  368889999999999999995433333468999999


Q ss_pred             EccCCCCC
Q 007628           94 DLRFNEFE  101 (595)
Q Consensus        94 dLs~N~l~  101 (595)
                      +|++|+|.
T Consensus        94 ~L~~N~I~  101 (175)
T PF14580_consen   94 YLSNNKIS  101 (175)
T ss_dssp             E-TTS---
T ss_pred             ECcCCcCC
Confidence            99999997

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.4e-11  Score=123.04  Aligned_cols=86  Identities=19%  Similarity=0.213  Sum_probs=45.2

Q ss_pred             eeEEEccCCCCCCC-CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCc-CCCc-CchhcCCCCCCCEEE
Q 007628           18 VASIDLNHADIAGY-LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR-FVGK-FPKLFLSLPKLKYLD   94 (595)
Q Consensus        18 L~~LdLs~n~i~~~-lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~-Lsg~-lp~~l~~L~~L~~Ld   94 (595)
                      |+.|||++..|+.. +-.-+..|.+|+.|.|.++++.+.+-.++++..+|+.|+|+.+. |+.. +--.|.+|+.|++|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            55566665555422 22233455566666666666666566666666666666665532 3311 112345556666666


Q ss_pred             ccCCCCCCC
Q 007628           95 LRFNEFEGS  103 (595)
Q Consensus        95 Ls~N~l~g~  103 (595)
                      |+++.+...
T Consensus       267 lsWc~l~~~  275 (419)
T KOG2120|consen  267 LSWCFLFTE  275 (419)
T ss_pred             chHhhccch
Confidence            666555433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.87  E-value=1.2e-09  Score=85.73  Aligned_cols=60  Identities=35%  Similarity=0.617  Sum_probs=39.8

Q ss_pred             CCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCC
Q 007628           41 DLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEF  100 (595)
Q Consensus        41 ~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l  100 (595)
                      +|++|+|++|+|+.+..+.|.++.+|++|+|++|+|+.+..+.|.+|.+|++|+|++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            466666666666655556666666677777776666655556666777777777776654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.84  E-value=2.6e-09  Score=83.85  Aligned_cols=61  Identities=34%  Similarity=0.538  Sum_probs=51.8

Q ss_pred             ccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccC
Q 007628          183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF  243 (595)
Q Consensus       183 ~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~L  243 (595)
                      .+|++|+|++|+|+....+.|..+.+|++|+|++|+|++...+.|.++.+|+.|+|++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3688899999998866667888899999999999999877778889999999999998875

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.81  E-value=6.1e-09  Score=121.97  Aligned_cols=229  Identities=18%  Similarity=0.224  Sum_probs=139.1

Q ss_pred             CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628           12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK   91 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~   91 (595)
                      |..|..|++|||++|.--+.++..|++|.+||+|+|++..|. .++..|++|..|.+|+|..+.....+...+..|.+|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            567899999999998766779999999999999999999999 7999999999999999999886666677788899999


Q ss_pred             EEEccCCCCCC--CCCccccc-cCCCeeeccCCcc--------------------------ccCCCcccCCCCceeEEee
Q 007628           92 YLDLRFNEFEG--SVPSKLFD-KDLDAIFLNDNRF--------------------------QFGIPENLGNSPVSVLVFA  142 (595)
Q Consensus        92 ~LdLs~N~l~g--~ip~~l~~-~~L~~L~L~~N~l--------------------------~~~~p~~l~~~~L~~L~L~  142 (595)
                      +|.|-...+..  ..-..+.. ..|+.|.......                          ...+.......+|+.|.+.
T Consensus       646 ~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~  725 (889)
T KOG4658|consen  646 VLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSIL  725 (889)
T ss_pred             EEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEE
Confidence            99997655221  11111111 2233322221111                          1111111222456666666


Q ss_pred             ccCCCCCcCcccccc-----cchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCC
Q 007628          143 NNDLGGCIPGSIGKM-----GKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHN  217 (595)
Q Consensus       143 ~N~l~~~ip~~l~~l-----~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N  217 (595)
                      ++.+....-......     ..++..+...++... ....+.....+|+.|+|.++.+...+-.....+..++++.+..+
T Consensus       726 ~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~  804 (889)
T KOG4658|consen  726 DCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFN  804 (889)
T ss_pred             cCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccc
Confidence            666543322221111     012222222222222 12222233467777777777766555555566666666666677


Q ss_pred             cCCCC-CchhccCCCCCcEEEccccc
Q 007628          218 RFTGV-IPSSVCQLPNLQNFTYSFNY  242 (595)
Q Consensus       218 ~Lsg~-iP~~l~~l~~L~~L~Ls~N~  242 (595)
                      .+.+. .-..++++.++.++.+.+=.
T Consensus       805 ~~~~l~~~~~l~~l~~i~~~~l~~~~  830 (889)
T KOG4658|consen  805 KLEGLRMLCSLGGLPQLYWLPLSFLK  830 (889)
T ss_pred             ccccceeeecCCCCceeEecccCccc
Confidence            76665 34555555555555555444

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=8.5e-11  Score=117.51  Aligned_cols=223  Identities=18%  Similarity=0.171  Sum_probs=139.9

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCC--CCcEEEccCCcCCCC-CchhhcCC-CCCCEEeccCCcCCC-cCchhcCCCCC
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLT--DLAIFHINSNRFCGV-VPSTFRRL-KLLYEVDLSNNRFVG-KFPKLFLSLPK   89 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~--~L~~L~Ls~N~l~~~-lp~~~~~L-~~L~~L~Ls~N~Lsg-~lp~~l~~L~~   89 (595)
                      -+.+++|||.+-+|...   .++.+.  .+.++.|....+... +.+.|.-+ +.|++|||++..|+. .+-..++.|.+
T Consensus       135 e~lW~~lDl~~r~i~p~---~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~k  211 (419)
T KOG2120|consen  135 ESLWQTLDLTGRNIHPD---VLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSK  211 (419)
T ss_pred             ccceeeeccCCCccChh---HHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHh
Confidence            36799999999888754   344333  344455544333332 22222222 458888888888762 23456677888


Q ss_pred             CCEEEccCCCCCCCCCccccc-cCCCeeeccCCc-cccCCCccc--CCCCceeEEeeccCCCCCc-CcccccccchhhHH
Q 007628           90 LKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNR-FQFGIPENL--GNSPVSVLVFANNDLGGCI-PGSIGKMGKTLNEI  164 (595)
Q Consensus        90 L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~-l~~~~p~~l--~~~~L~~L~L~~N~l~~~i-p~~l~~l~~~L~~L  164 (595)
                      |+.|.|.+++|.+.|...+.. .+|+.|+|+.+. |+..-...+  ....|+.|+|+.+.+...+ -..+.....+|+.|
T Consensus       212 Lk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~L  291 (419)
T KOG2120|consen  212 LKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQL  291 (419)
T ss_pred             hhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhh
Confidence            888888888888777666655 678888887653 321111111  1256777888877655432 23334445678888


Q ss_pred             HhhccccC---CCCCCccCCCccceEEeccCcc-ccCCCCCCcCCCCCccEEEccCCcCCCCCchh---ccCCCCCcEEE
Q 007628          165 ILMNDNLT---GCLPPQIGMLKNLTVFDVSFNH-LQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSS---VCQLPNLQNFT  237 (595)
Q Consensus       165 ~Ls~N~l~---g~ip~~~~~L~~L~~LdLs~N~-L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~---l~~l~~L~~L~  237 (595)
                      +|++..-.   ..+..-...+.+|.+|||++|. |+...-.+|.++..|++|.|+.|-.  .++..   |..+.+|.+||
T Consensus       292 NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLd  369 (419)
T KOG2120|consen  292 NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLD  369 (419)
T ss_pred             hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEE
Confidence            88875322   2222334567889999999875 4545556677888899998888764  34444   45567788888


Q ss_pred             ccccc
Q 007628          238 YSFNY  242 (595)
Q Consensus       238 Ls~N~  242 (595)
                      +-+.-
T Consensus       370 v~g~v  374 (419)
T KOG2120|consen  370 VFGCV  374 (419)
T ss_pred             ecccc
Confidence            77653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=1.1e-09  Score=109.50  Aligned_cols=183  Identities=16%  Similarity=0.100  Sum_probs=109.4

Q ss_pred             CCCceeEEEccCCCCCCC--CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc-CchhcCCCCCC
Q 007628           14 SLRVVASIDLNHADIAGY--LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK-FPKLFLSLPKL   90 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~--lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~-lp~~l~~L~~L   90 (595)
                      +.+.|+.|||.+|.|++-  +..-+.+|..|++|+|+.|.+...|...=..+.+|+.|.|++..|.-. .-..+..+.++
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            456799999999999852  233356899999999999999976655446789999999999988743 34466778899


Q ss_pred             CEEEccCCCCCCC-CCccccc---cCCCeeeccCCccccCC---CcccCCCCceeEEeeccCCCCCcCcccccccchhhH
Q 007628           91 KYLDLRFNEFEGS-VPSKLFD---KDLDAIFLNDNRFQFGI---PENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNE  163 (595)
Q Consensus        91 ~~LdLs~N~l~g~-ip~~l~~---~~L~~L~L~~N~l~~~~---p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~  163 (595)
                      ++|.+|.|++.-. +.+....   ..+++|++..|.++--.   --.--..++..+.+..|-+...-...-++-...+..
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            9999999965421 1111111   24555555444332000   000001345555666665443322221111144556


Q ss_pred             HHhhccccCCC-CCCccCCCccceEEeccCcccc
Q 007628          164 IILMNDNLTGC-LPPQIGMLKNLTVFDVSFNHLQ  196 (595)
Q Consensus       164 L~Ls~N~l~g~-ip~~~~~L~~L~~LdLs~N~L~  196 (595)
                      |+|+.|+|... --+++.++..|..|.+++|-|.
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            66666666522 1234555666666666666554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.48  E-value=2.1e-08  Score=90.23  Aligned_cols=132  Identities=18%  Similarity=0.220  Sum_probs=73.6

Q ss_pred             CceeEEEccCCCCCCC--CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           16 RVVASIDLNHADIAGY--LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~--lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      ..+..+||+.++|-.+  ....+.+..+|..++|++|.|...-...-..+..++.|+|++|+|+ .+++.|..+..|+.|
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL  105 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence            3455666666655421  1122334455666677777776433333344556777777777777 556667777777777


Q ss_pred             EccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCC
Q 007628           94 DLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGC  149 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~  149 (595)
                      +|++|.|. ..+..++. .+|..|+..+|.+...--+.+....+..+++.++.+.+.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~  161 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDE  161 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCccccc
Confidence            77777776 44444443 566666666666553322322223333344555555543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.43  E-value=2.5e-08  Score=89.80  Aligned_cols=106  Identities=24%  Similarity=0.302  Sum_probs=70.8

Q ss_pred             CCCCCcEEEccCCcCCCCCchh---hcCCCCCCEEeccCCcCCCcCchhc-CCCCCCCEEEccCCCCCCCCCccccc-cC
Q 007628           38 RLTDLAIFHINSNRFCGVVPST---FRRLKLLYEVDLSNNRFVGKFPKLF-LSLPKLKYLDLRFNEFEGSVPSKLFD-KD  112 (595)
Q Consensus        38 ~L~~L~~L~Ls~N~l~~~lp~~---~~~L~~L~~L~Ls~N~Lsg~lp~~l-~~L~~L~~LdLs~N~l~g~ip~~l~~-~~  112 (595)
                      +-..+..|||++|.|. .+.+.   +.+...|+.++|++|.|. .++..| .++..+++|+|++|+|+ +++..+.. ..
T Consensus        25 dakE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~a  101 (177)
T KOG4579|consen   25 DAKELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPA  101 (177)
T ss_pred             HHHHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHH
Confidence            3455778899999876 45554   455566777899999998 455544 44568899999999998 67766544 77


Q ss_pred             CCeeeccCCccccCCCcccCCCCceeEEeeccCC
Q 007628          113 LDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDL  146 (595)
Q Consensus       113 L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l  146 (595)
                      |+.|+++.|.|....-..+.+.++..|+..+|.+
T Consensus       102 Lr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  102 LRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             hhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence            8888888888764333333333444444444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.36  E-value=1.9e-06  Score=91.99  Aligned_cols=32  Identities=16%  Similarity=0.228  Sum_probs=18.5

Q ss_pred             ccceEEeccCccccCCCCCCcCCCCCccEEEccCC
Q 007628          183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHN  217 (595)
Q Consensus       183 ~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N  217 (595)
                      .+|++|+|++|.+. .+++.+-  .+|+.|++++|
T Consensus       156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            46777777766654 3333333  36666776655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.21  E-value=1.7e-06  Score=82.91  Aligned_cols=82  Identities=23%  Similarity=0.221  Sum_probs=44.5

Q ss_pred             CCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCC--CCccccccCCCeeec
Q 007628           41 DLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGS--VPSKLFDKDLDAIFL  118 (595)
Q Consensus        41 ~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~--ip~~l~~~~L~~L~L  118 (595)
                      +...|||++|+|..+  ..|-.+.+|.+|.|++|+|+.+.+..-..+.+|+.|.|.+|+|...  +........|++|.|
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            455666666666532  3456666666666666666644444334455566666666666521  111111245666666


Q ss_pred             cCCccc
Q 007628          119 NDNRFQ  124 (595)
Q Consensus       119 ~~N~l~  124 (595)
                      -+|..+
T Consensus       121 l~Npv~  126 (233)
T KOG1644|consen  121 LGNPVE  126 (233)
T ss_pred             cCCchh
Confidence            666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.10  E-value=4.7e-06  Score=79.89  Aligned_cols=102  Identities=17%  Similarity=0.210  Sum_probs=65.3

Q ss_pred             CCcEEEccCCcCCCCCchhhc-CCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc--cCCCeee
Q 007628           41 DLAIFHINSNRFCGVVPSTFR-RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIF  117 (595)
Q Consensus        41 ~L~~L~Ls~N~l~~~lp~~~~-~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~--~~L~~L~  117 (595)
                      .-+.++|++.+|..+ . .++ -+.+...+||++|.|..  -..|-.+..|.+|.|++|+|+ .|...+..  .+|+.|.
T Consensus        20 ~e~e~~LR~lkip~i-e-nlg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~   94 (233)
T KOG1644|consen   20 RERELDLRGLKIPVI-E-NLGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLI   94 (233)
T ss_pred             cccccccccccccch-h-hccccccccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEE
Confidence            356777777776632 1 132 24677889999998872  246778899999999999998 55555544  5688888


Q ss_pred             ccCCccc--cCCCcccCCCCceeEEeeccCCC
Q 007628          118 LNDNRFQ--FGIPENLGNSPVSVLVFANNDLG  147 (595)
Q Consensus       118 L~~N~l~--~~~p~~l~~~~L~~L~L~~N~l~  147 (595)
                      |.+|.+.  |++........|++|.+-+|.++
T Consensus        95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             ecCcchhhhhhcchhccCCccceeeecCCchh
Confidence            8888775  22222223334555555555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.02  E-value=6.1e-06  Score=88.25  Aligned_cols=135  Identities=14%  Similarity=0.214  Sum_probs=68.7

Q ss_pred             hcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCC-cCCCcCchhcCCCCCCCEEEccCC-CCCCCCCccccccCC
Q 007628           36 IGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNN-RFVGKFPKLFLSLPKLKYLDLRFN-EFEGSVPSKLFDKDL  113 (595)
Q Consensus        36 ~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N-~Lsg~lp~~l~~L~~L~~LdLs~N-~l~g~ip~~l~~~~L  113 (595)
                      +..+.+++.|+|++|.|+. ++   ..-.+|++|+|+++ +|+ .+++.+  ..+|++|+|++| +|. .++     ..|
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP---~LP~sLtsL~Lsnc~nLt-sLP~~L--P~nLe~L~Ls~Cs~L~-sLP-----~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LP---VLPNELTEITIENCNNLT-TLPGSI--PEGLEKLTVCHCPEIS-GLP-----ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cC---CCCCCCcEEEccCCCCcc-cCCchh--hhhhhheEccCccccc-ccc-----ccc
Confidence            3446777777777777663 33   12345777777763 333 445444  246777777776 443 333     345


Q ss_pred             CeeeccCCccc--cCCCcccCCCCceeEEeeccCCCCCcCcccc-cccchhhHHHhhccccCCCCCCccCCCccceEEec
Q 007628          114 DAIFLNDNRFQ--FGIPENLGNSPVSVLVFANNDLGGCIPGSIG-KMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDV  190 (595)
Q Consensus       114 ~~L~L~~N~l~--~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~-~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdL  190 (595)
                      +.|+|..|.+.  +.++.     .|+.|.+.+++..  ....+. .+..+|++|++.+|... .++..+-  .+|+.|++
T Consensus       115 e~L~L~~n~~~~L~~LPs-----sLk~L~I~~~n~~--~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l  184 (426)
T PRK15386        115 RSLEIKGSATDSIKNVPN-----GLTSLSINSYNPE--NQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL  184 (426)
T ss_pred             ceEEeCCCCCcccccCcc-----hHhheeccccccc--cccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence            66666554432  12222     3444555332211  001111 12346677777666544 2333222  46777777


Q ss_pred             cCc
Q 007628          191 SFN  193 (595)
Q Consensus       191 s~N  193 (595)
                      ++|
T Consensus       185 s~n  187 (426)
T PRK15386        185 HIE  187 (426)
T ss_pred             ccc
Confidence            665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.00  E-value=1e-06  Score=101.05  Aligned_cols=133  Identities=17%  Similarity=0.175  Sum_probs=74.3

Q ss_pred             CCCCEEEccCCCCC-CCCCccccc--cCCCeeeccCCccccCC-Cccc-CCCCceeEEeeccCCCCCcCcccccccchhh
Q 007628           88 PKLKYLDLRFNEFE-GSVPSKLFD--KDLDAIFLNDNRFQFGI-PENL-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLN  162 (595)
Q Consensus        88 ~~L~~LdLs~N~l~-g~ip~~l~~--~~L~~L~L~~N~l~~~~-p~~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~  162 (595)
                      .+|++|||++...- ......+..  ..|+.|.+.+-.|...- -..+ ...+|..||+++.+++..  .++.++ ++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L-knLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRL-KNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhcc-ccHH
Confidence            45777777664322 111111111  56666666655543221 0111 124677777777777644  566666 7788


Q ss_pred             HHHhhccccCC-CCCCccCCCccceEEeccCccccCCC------CCCcCCCCCccEEEccCCcCCCCC
Q 007628          163 EIILMNDNLTG-CLPPQIGMLKNLTVFDVSFNHLQGSL------PSSIGNMKSLEQLNVAHNRFTGVI  223 (595)
Q Consensus       163 ~L~Ls~N~l~g-~ip~~~~~L~~L~~LdLs~N~L~g~l------P~~l~~L~~L~~L~Ls~N~Lsg~i  223 (595)
                      +|.+.+-.+.. ..-.++.+|++|++||+|........      -+.-..|.+|+.||.+++.+.+.+
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI  266 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence            88887766653 23345667788888888776543211      111233667777777777776544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=1.6e-05  Score=58.14  Aligned_cols=36  Identities=39%  Similarity=0.550  Sum_probs=18.8

Q ss_pred             CCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCC
Q 007628           65 LLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFE  101 (595)
Q Consensus        65 ~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~  101 (595)
                      +|++|+|++|+|+ .++..|++|.+|++|||++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555554

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.83  E-value=7.4e-07  Score=102.20  Aligned_cols=139  Identities=17%  Similarity=0.178  Sum_probs=83.1

Q ss_pred             cCCCeeeccCCccc-cCCCcccC--CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceE
Q 007628          111 KDLDAIFLNDNRFQ-FGIPENLG--NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTV  187 (595)
Q Consensus       111 ~~L~~L~L~~N~l~-~~~p~~l~--~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~  187 (595)
                      .+|++|++++.... ..-...++  ...|+.|.+.+-.|...--..++.-..+|..||+++.+++..  ..+++|++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            57888888775432 11111122  245777777765554322222233336788888888877743  56777888888


Q ss_pred             EeccCccccC-CCCCCcCCCCCccEEEccCCcCCCCC--c----hhccCCCCCcEEEcccccCCCCCCccc
Q 007628          188 FDVSFNHLQG-SLPSSIGNMKSLEQLNVAHNRFTGVI--P----SSVCQLPNLQNFTYSFNYFTGEPPSCT  251 (595)
Q Consensus       188 LdLs~N~L~g-~lP~~l~~L~~L~~L~Ls~N~Lsg~i--P----~~l~~l~~L~~L~Ls~N~Lsg~~p~~~  251 (595)
                      |.+.+=.+.. ..-..+.+|++|+.||+|..+.....  .    +....|.+|+.||.+++.+++.+-+..
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l  270 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL  270 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence            8777766642 22234667888888888876654321  1    122346788888888777776655443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.77  E-value=2.8e-05  Score=56.84  Aligned_cols=36  Identities=36%  Similarity=0.638  Sum_probs=17.5

Q ss_pred             cceEEeccCccccCCCCCCcCCCCCccEEEccCCcCC
Q 007628          184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFT  220 (595)
Q Consensus       184 ~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Ls  220 (595)
                      +|++|+|++|+|+ .++..|++|.+|++|+|++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            4555555555555 34444555555555555555554

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.76  E-value=1.4e-07  Score=103.76  Aligned_cols=180  Identities=19%  Similarity=0.193  Sum_probs=96.4

Q ss_pred             CcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCCCcC----chhcCCC-CCCCEEEccCCCCCCCCCccccc--
Q 007628           42 LAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFVGKF----PKLFLSL-PKLKYLDLRFNEFEGSVPSKLFD--  110 (595)
Q Consensus        42 L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~l----p~~l~~L-~~L~~LdLs~N~l~g~ip~~l~~--  110 (595)
                      |..|+|.+|.|...    +-..+..+.+|..|+|++|.|.+.-    -..+... ..|++|++..|.+++..-..+..  
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            55666666666543    2233455566666666666666321    1222222 44566666666665433322221  


Q ss_pred             ---cCCCeeeccCCccccC----CCcc-----cCCCCceeEEeeccCCCCCcC----cccccccchhhHHHhhccccCCC
Q 007628          111 ---KDLDAIFLNDNRFQFG----IPEN-----LGNSPVSVLVFANNDLGGCIP----GSIGKMGKTLNEIILMNDNLTGC  174 (595)
Q Consensus       111 ---~~L~~L~L~~N~l~~~----~p~~-----l~~~~L~~L~L~~N~l~~~ip----~~l~~l~~~L~~L~Ls~N~l~g~  174 (595)
                         ..|+.|++..|.+...    +...     ....+++.|+|.+|.++...-    ..+......+.+|++.+|.+...
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence               3455566666655310    0111     123457777777777663221    12222222266688888877633


Q ss_pred             ----CCCccCCC-ccceEEeccCccccCCCC----CCcCCCCCccEEEccCCcCCC
Q 007628          175 ----LPPQIGML-KNLTVFDVSFNHLQGSLP----SSIGNMKSLEQLNVAHNRFTG  221 (595)
Q Consensus       175 ----ip~~~~~L-~~L~~LdLs~N~L~g~lP----~~l~~L~~L~~L~Ls~N~Lsg  221 (595)
                          +...+..+ .+|++|||+.|.|+....    +.+..+.+|++|.|++|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence                12234444 567888888888864433    344556778888888888764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.64  E-value=1.4e-06  Score=91.37  Aligned_cols=228  Identities=15%  Similarity=0.090  Sum_probs=113.8

Q ss_pred             ceeEEEccCCCCCCC--CchhhcCCCCCcEEEccCCc-CCCCCchhh-cCCCCCCEEeccC-CcCCCcCc-hhcCCCCCC
Q 007628           17 VVASIDLNHADIAGY--LPPEIGRLTDLAIFHINSNR-FCGVVPSTF-RRLKLLYEVDLSN-NRFVGKFP-KLFLSLPKL   90 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~--lp~~~~~L~~L~~L~Ls~N~-l~~~lp~~~-~~L~~L~~L~Ls~-N~Lsg~lp-~~l~~L~~L   90 (595)
                      .|+.|.|+++.-.+.  +.....++.+++.|+|.++. |++..-.+| ..+.+|+.|+|.. -.|+...- +....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            566777776643222  22334567778888777775 333222223 4578888888887 34443322 244568888


Q ss_pred             CEEEccCC-CCCCCCCccccc--cCCCeeeccCCccccC-CCccc--CCCCceeEEeecc-CCCCCcCcccccccchhhH
Q 007628           91 KYLDLRFN-EFEGSVPSKLFD--KDLDAIFLNDNRFQFG-IPENL--GNSPVSVLVFANN-DLGGCIPGSIGKMGKTLNE  163 (595)
Q Consensus        91 ~~LdLs~N-~l~g~ip~~l~~--~~L~~L~L~~N~l~~~-~p~~l--~~~~L~~L~L~~N-~l~~~ip~~l~~l~~~L~~  163 (595)
                      ++|+|+++ .|+|.--..++.  ..|+.+.+.++.-.+. .-..+  ....+..|++.++ .++..---.+......|++
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            89988876 454422222322  3345554443221100 00000  1122344444443 2332222223333356777


Q ss_pred             HHhhccccCC-CCCCcc-CCCccceEEeccCcc-ccCCCCCCc-CCCCCccEEEccCCcCC--CCCchhccCCCCCcEEE
Q 007628          164 IILMNDNLTG-CLPPQI-GMLKNLTVFDVSFNH-LQGSLPSSI-GNMKSLEQLNVAHNRFT--GVIPSSVCQLPNLQNFT  237 (595)
Q Consensus       164 L~Ls~N~l~g-~ip~~~-~~L~~L~~LdLs~N~-L~g~lP~~l-~~L~~L~~L~Ls~N~Ls--g~iP~~l~~l~~L~~L~  237 (595)
                      |+.++....+ ..-.++ .++.+|++|.|..++ |+..--..+ .++..|+.|++..+.+.  +++...-.++..|++|.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            7777654322 111222 235678888877775 332222222 34566777777766543  12222234456677777


Q ss_pred             cccccCC
Q 007628          238 YSFNYFT  244 (595)
Q Consensus       238 Ls~N~Ls  244 (595)
                      |+++.+.
T Consensus       379 lshce~i  385 (483)
T KOG4341|consen  379 LSHCELI  385 (483)
T ss_pred             hhhhhhh
Confidence            7766543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.58  E-value=2.2e-05  Score=78.22  Aligned_cols=68  Identities=25%  Similarity=0.377  Sum_probs=37.8

Q ss_pred             CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCC--cCCCcCchhcCCCCCCCEEEccCCCCC
Q 007628           32 LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNN--RFVGKFPKLFLSLPKLKYLDLRFNEFE  101 (595)
Q Consensus        32 lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N--~Lsg~lp~~l~~L~~L~~LdLs~N~l~  101 (595)
                      +...+..+..|+.|.+.+..++.+  ..|-.|.+|++|+|+.|  ++++.+.....++.+|++|+|++|+|.
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            334444555555555555555532  23445566666666666  455445444555566666666666665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.54  E-value=0.00014  Score=65.14  Aligned_cols=83  Identities=18%  Similarity=0.187  Sum_probs=44.4

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY   92 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~   92 (595)
                      .+..+|+.+++.+ ++..+....|.++.+|+.|++.++ +..+...+|.++.+|+.|++.+ .+.......|.++.+|+.
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence            3445666777764 466655666777777777777664 5555566677776777777765 343334456666777777


Q ss_pred             EEccCC
Q 007628           93 LDLRFN   98 (595)
Q Consensus        93 LdLs~N   98 (595)
                      +++..|
T Consensus        86 i~~~~~   91 (129)
T PF13306_consen   86 IDIPSN   91 (129)
T ss_dssp             EEETTT
T ss_pred             cccCcc
Confidence            777554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.54  E-value=0.00017  Score=64.58  Aligned_cols=84  Identities=14%  Similarity=0.203  Sum_probs=52.5

Q ss_pred             hhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc--c
Q 007628           34 PEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--K  111 (595)
Q Consensus        34 ~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~--~  111 (595)
                      ..|.++.+|+.+.+.+ .+..+...+|.++.+|+.|++.++ +..+-...|.++.+|+.|++.+ .+. .+....+.  .
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence            5688899999999985 577677788999999999999886 7756667888998899999976 443 33344443  5


Q ss_pred             CCCeeeccCC
Q 007628          112 DLDAIFLNDN  121 (595)
Q Consensus       112 ~L~~L~L~~N  121 (595)
                      +|+.+++..+
T Consensus        82 ~l~~i~~~~~   91 (129)
T PF13306_consen   82 NLKNIDIPSN   91 (129)
T ss_dssp             TECEEEETTT
T ss_pred             cccccccCcc
Confidence            6666666544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=7.9e-06  Score=81.76  Aligned_cols=101  Identities=17%  Similarity=0.194  Sum_probs=79.1

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCc-hhcCCCCCCC
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFP-KLFLSLPKLK   91 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp-~~l~~L~~L~   91 (595)
                      ..|.+++.|++-+++|+++  ..+.+|..|++|.|+-|+|+.+  +.|.+|++|++|+|..|.|..+.. ..|.+|.+|+
T Consensus        16 sdl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr   91 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR   91 (388)
T ss_pred             hHHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence            5678899999999999876  3456899999999999999854  568999999999999999984421 3578899999


Q ss_pred             EEEccCCCCCCCCCccccc------cCCCeee
Q 007628           92 YLDLRFNEFEGSVPSKLFD------KDLDAIF  117 (595)
Q Consensus        92 ~LdLs~N~l~g~ip~~l~~------~~L~~L~  117 (595)
                      .|.|..|--.|......-.      .+|++||
T Consensus        92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            9999999877655543321      5666665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.29  E-value=0.00015  Score=72.27  Aligned_cols=102  Identities=20%  Similarity=0.259  Sum_probs=59.8

Q ss_pred             CCceeEEeeccCCCCCcCcccccccchhhHHHhhcc--ccCCCCCCccCCCccceEEeccCccccC-CCCCCcCCCCCcc
Q 007628          134 SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMND--NLTGCLPPQIGMLKNLTVFDVSFNHLQG-SLPSSIGNMKSLE  210 (595)
Q Consensus       134 ~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N--~l~g~ip~~~~~L~~L~~LdLs~N~L~g-~lP~~l~~L~~L~  210 (595)
                      ..|+.|++.+.+++..  ..|-.| .+|++|.++.|  ++.+.+.-....+.+|++|+|++|+|.. .--..+..+.+|.
T Consensus        43 ~~le~ls~~n~gltt~--~~~P~L-p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   43 VELELLSVINVGLTTL--TNFPKL-PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cchhhhhhhccceeec--ccCCCc-chhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            3455555555555422  122233 57888888888  5555554445556788888888888762 1112345667777


Q ss_pred             EEEccCCcCCCCC---chhccCCCCCcEEEc
Q 007628          211 QLNVAHNRFTGVI---PSSVCQLPNLQNFTY  238 (595)
Q Consensus       211 ~L~Ls~N~Lsg~i---P~~l~~l~~L~~L~L  238 (595)
                      .|+|.+|..++..   -..|.-|.+|+.||.
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            8888887766532   124555566666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.24  E-value=2.2e-05  Score=78.66  Aligned_cols=60  Identities=23%  Similarity=0.219  Sum_probs=46.3

Q ss_pred             CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCC
Q 007628           38 RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFE  101 (595)
Q Consensus        38 ~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~  101 (595)
                      +|.+++.|++.++.|.++  ....++..|++|.|+-|+|+..  ..|..|++|++|+|..|.|.
T Consensus        17 dl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~   76 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE   76 (388)
T ss_pred             HHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence            466777888888888754  3456788888888888888844  34777888888888888887

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.10  E-value=2.8e-05  Score=81.74  Aligned_cols=228  Identities=16%  Similarity=0.085  Sum_probs=111.5

Q ss_pred             CCCceeEEEccCCC-CCCCCchhh-cCCCCCcEEEccCC-cCCCCCch-hhcCCCCCCEEeccCCc-CCCc-CchhcCCC
Q 007628           14 SLRVVASIDLNHAD-IAGYLPPEI-GRLTDLAIFHINSN-RFCGVVPS-TFRRLKLLYEVDLSNNR-FVGK-FPKLFLSL   87 (595)
Q Consensus        14 ~l~~L~~LdLs~n~-i~~~lp~~~-~~L~~L~~L~Ls~N-~l~~~lp~-~~~~L~~L~~L~Ls~N~-Lsg~-lp~~l~~L   87 (595)
                      ...+++.|+|.++. |++..-..+ .++.+|+.|+|..+ .|+...-. ....+.+|++|+|+.+. |++. +-..+.++
T Consensus       162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~  241 (483)
T KOG4341|consen  162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC  241 (483)
T ss_pred             hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence            34566666666664 444433333 36888888888883 45544333 33567888888887653 3321 11223344


Q ss_pred             CCCCEEEccC--------------------------CCCCCCCCccccc---cCCCeeeccCCccccC-CCcccC--CCC
Q 007628           88 PKLKYLDLRF--------------------------NEFEGSVPSKLFD---KDLDAIFLNDNRFQFG-IPENLG--NSP  135 (595)
Q Consensus        88 ~~L~~LdLs~--------------------------N~l~g~ip~~l~~---~~L~~L~L~~N~l~~~-~p~~l~--~~~  135 (595)
                      ++|+.+.+.+                          +........+...   ..|+.|..+++...+. +-..++  ..+
T Consensus       242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~  321 (483)
T KOG4341|consen  242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN  321 (483)
T ss_pred             hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence            4444443332                          2111011100000   2344444444332211 111121  245


Q ss_pred             ceeEEeeccC-CCCCcCcccccccchhhHHHhhccccC--CCCCCccCCCccceEEeccCccccCCC-----CCCcCCCC
Q 007628          136 VSVLVFANND-LGGCIPGSIGKMGKTLNEIILMNDNLT--GCLPPQIGMLKNLTVFDVSFNHLQGSL-----PSSIGNMK  207 (595)
Q Consensus       136 L~~L~L~~N~-l~~~ip~~l~~l~~~L~~L~Ls~N~l~--g~ip~~~~~L~~L~~LdLs~N~L~g~l-----P~~l~~L~  207 (595)
                      |++|.|..++ |+..--..++.....|+.|++....+.  +.+...-.++..|++|.|+++.+....     ...-..+.
T Consensus       322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~  401 (483)
T KOG4341|consen  322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE  401 (483)
T ss_pred             eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence            6666666554 333333344444456666666665433  222222234567777777776553111     22234556


Q ss_pred             CccEEEccCCcCC-CCCchhccCCCCCcEEEcccc
Q 007628          208 SLEQLNVAHNRFT-GVIPSSVCQLPNLQNFTYSFN  241 (595)
Q Consensus       208 ~L~~L~Ls~N~Ls-g~iP~~l~~l~~L~~L~Ls~N  241 (595)
                      .|+.|.|+++.++ ...-+.+..+.+|+.++|-..
T Consensus       402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            6777777776653 222344555666666666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.09  E-value=9.1e-05  Score=81.27  Aligned_cols=61  Identities=21%  Similarity=0.040  Sum_probs=27.3

Q ss_pred             CCCCcEEEccCCcCCCC--CchhhcCCCCCCEEeccCC-cCCCcC----chhcCCCCCCCEEEccCCC
Q 007628           39 LTDLAIFHINSNRFCGV--VPSTFRRLKLLYEVDLSNN-RFVGKF----PKLFLSLPKLKYLDLRFNE   99 (595)
Q Consensus        39 L~~L~~L~Ls~N~l~~~--lp~~~~~L~~L~~L~Ls~N-~Lsg~l----p~~l~~L~~L~~LdLs~N~   99 (595)
                      +..|+.|.+.++.-...  +-..+..+.+|+.|+|+++ ......    ......+.+|+.|||+++.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  254 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG  254 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence            45555555555532222  2334455566666666542 110010    1122334556666666555

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.05  E-value=2.8e-06  Score=93.63  Aligned_cols=181  Identities=20%  Similarity=0.233  Sum_probs=122.7

Q ss_pred             CCEEeccCCcCCCc----CchhcCCCCCCCEEEccCCCCCCCCCccccc------cCCCeeeccCCccccCCCccc----
Q 007628           66 LYEVDLSNNRFVGK----FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD------KDLDAIFLNDNRFQFGIPENL----  131 (595)
Q Consensus        66 L~~L~Ls~N~Lsg~----lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~------~~L~~L~L~~N~l~~~~p~~l----  131 (595)
                      |..|+|.+|.|...    +-..+..+..|+.|||++|.|.+.--..+..      ..|++|++..|.++......+    
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            88899999998854    3446677889999999999998433333322      346678888887775433222    


Q ss_pred             -CCCCceeEEeeccCCCC----CcCccccc---ccchhhHHHhhccccCCC----CCCccCCCcc-ceEEeccCccccCC
Q 007628          132 -GNSPVSVLVFANNDLGG----CIPGSIGK---MGKTLNEIILMNDNLTGC----LPPQIGMLKN-LTVFDVSFNHLQGS  198 (595)
Q Consensus       132 -~~~~L~~L~L~~N~l~~----~ip~~l~~---l~~~L~~L~Ls~N~l~g~----ip~~~~~L~~-L~~LdLs~N~L~g~  198 (595)
                       .+..++++++..|.+..    .+...+..   ...++++|.|.+|.++..    +...+....+ +..|++.+|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence             23457778888888742    12222332   236789999999987732    2223444555 77799999998744


Q ss_pred             ----CCCCcCCC-CCccEEEccCCcCCCC----CchhccCCCCCcEEEcccccCCCC
Q 007628          199 ----LPSSIGNM-KSLEQLNVAHNRFTGV----IPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       199 ----lP~~l~~L-~~L~~L~Ls~N~Lsg~----iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                          +...+..+ .+|++|+|+.|.|++.    +.+.+..+.+|+.|.+++|.+...
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence                23334455 6789999999999764    445666778899999999998763

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.96  E-value=7.5e-05  Score=81.95  Aligned_cols=108  Identities=13%  Similarity=0.084  Sum_probs=55.4

Q ss_pred             CceeEEEccCCC-CCCC-CchhhcCCCCCcEEEccCC-cCCCC----CchhhcCCCCCCEEeccCCc-CCCcCchhcC-C
Q 007628           16 RVVASIDLNHAD-IAGY-LPPEIGRLTDLAIFHINSN-RFCGV----VPSTFRRLKLLYEVDLSNNR-FVGKFPKLFL-S   86 (595)
Q Consensus        16 ~~L~~LdLs~n~-i~~~-lp~~~~~L~~L~~L~Ls~N-~l~~~----lp~~~~~L~~L~~L~Ls~N~-Lsg~lp~~l~-~   86 (595)
                      ..|+.|.+.++. +... +-.....+.+|+.|+|+++ .....    .......+.+|+.|+|++.. ++...-..+. .
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            445555555442 2221 2344556777777777762 11111    11233456777777777776 4433333333 2


Q ss_pred             CCCCCEEEccCCC-CCCCCCccccc--cCCCeeeccCCcc
Q 007628           87 LPKLKYLDLRFNE-FEGSVPSKLFD--KDLDAIFLNDNRF  123 (595)
Q Consensus        87 L~~L~~LdLs~N~-l~g~ip~~l~~--~~L~~L~L~~N~l  123 (595)
                      +.+|++|.+.++. +++..-..+..  ..|++|+|+++..
T Consensus       268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            6777777766555 44222222222  4577777776554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.73  E-value=5.5e-05  Score=74.06  Aligned_cols=46  Identities=7%  Similarity=-0.021  Sum_probs=26.3

Q ss_pred             cCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccC
Q 007628          150 IPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG  197 (595)
Q Consensus       150 ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g  197 (595)
                      ++.+++++ ..+..+++.+|+++ ..+.+++.+.+++.+++.+|.|..
T Consensus        80 ~~~d~~q~-~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen   80 LPKDAKQQ-RETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFFR  125 (326)
T ss_pred             ChhhHHHH-HHHHHHHhhccchh-hCCccccccCCcchhhhccCcchH
Confidence            34444444 45556666665555 455666666666666666665543

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=96.67  E-value=0.0026  Score=68.20  Aligned_cols=87  Identities=11%  Similarity=0.076  Sum_probs=43.1

Q ss_pred             chhhHHHhhccccCCCCCCccCC--CccceEEeccCccc---c--CCCCCCc----CCCCCccEEEccCCcCCCCCchh-
Q 007628          159 KTLNEIILMNDNLTGCLPPQIGM--LKNLTVFDVSFNHL---Q--GSLPSSI----GNMKSLEQLNVAHNRFTGVIPSS-  226 (595)
Q Consensus       159 ~~L~~L~Ls~N~l~g~ip~~~~~--L~~L~~LdLs~N~L---~--g~lP~~l----~~L~~L~~L~Ls~N~Lsg~iP~~-  226 (595)
                      ..+++|++.+|++.|+.-.....  -+.++.|++.+-..   .  +.+-..+    ....-|..|.++.|.+...+-.. 
T Consensus       354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i  433 (553)
T KOG4242|consen  354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI  433 (553)
T ss_pred             eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence            34677777777766655443321  23455555543322   0  0000000    11123566777777776443332 


Q ss_pred             --ccCCCCCcEEEcccccCCC
Q 007628          227 --VCQLPNLQNFTYSFNYFTG  245 (595)
Q Consensus       227 --l~~l~~L~~L~Ls~N~Lsg  245 (595)
                        +..-..|+.||+++|.+..
T Consensus       434 n~l~stqtl~kldisgn~mgd  454 (553)
T KOG4242|consen  434 NKLLSTQTLAKLDISGNGMGD  454 (553)
T ss_pred             HhhccCcccccccccCCCccc
Confidence              2333567777888776643

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.39  E-value=0.0001  Score=72.25  Aligned_cols=84  Identities=19%  Similarity=0.245  Sum_probs=47.0

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      ++.++.|||+.|++.. +...|..++.|..|||+.|+|. .++..++++..++.+++.+|+++ ..+..+.++..++++|
T Consensus        41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            3445556665555543 3344555555555666655555 45555555555666666655555 4555555666666666


Q ss_pred             ccCCCCC
Q 007628           95 LRFNEFE  101 (595)
Q Consensus        95 Ls~N~l~  101 (595)
                      +-.|.|.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            6555544

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=95.89  E-value=0.032  Score=60.08  Aligned_cols=65  Identities=15%  Similarity=0.010  Sum_probs=36.5

Q ss_pred             cceEEeccCccccCCCCCCc--CCCCCccEEEccCCcC-----CCCCchhc----cCCCCCcEEEcccccCCCCCC
Q 007628          184 NLTVFDVSFNHLQGSLPSSI--GNMKSLEQLNVAHNRF-----TGVIPSSV----CQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       184 ~L~~LdLs~N~L~g~lP~~l--~~L~~L~~L~Ls~N~L-----sg~iP~~l----~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      ++++|+++.|++.|++-...  .+-+.++.|++..-..     .+++...+    ....-|..++++.|.+.....
T Consensus       355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~  430 (553)
T KOG4242|consen  355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLE  430 (553)
T ss_pred             eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHH
Confidence            58999999999987765543  3345677777654322     11111111    112235667777776655443

>PHA03247 large tegument protein UL36; Provisional

Probab=95.60  E-value=11  Score=48.87  Aligned_cols=9  Identities=33%  Similarity=0.637  Sum_probs=3.7

Q ss_pred             ceEEeccCc
Q 007628          185 LTVFDVSFN  193 (595)
Q Consensus       185 L~~LdLs~N  193 (595)
                      |..||.+.+
T Consensus      2398 LvlvD~~m~ 2406 (3151)
T PHA03247       2398 LVLVDISMA 2406 (3151)
T ss_pred             EEEEcCCCc
Confidence            344444433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.05  E-value=0.0098  Score=36.55  Aligned_cols=19  Identities=47%  Similarity=0.627  Sum_probs=9.5

Q ss_pred             ceEEeccCccccCCCCCCcC
Q 007628          185 LTVFDVSFNHLQGSLPSSIG  204 (595)
Q Consensus       185 L~~LdLs~N~L~g~lP~~l~  204 (595)
                      |++|||++|+|+ .++.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.68  E-value=0.014  Score=35.80  Aligned_cols=22  Identities=45%  Similarity=0.652  Sum_probs=15.7

Q ss_pred             CccEEEccCCcCCCCCchhccCC
Q 007628          208 SLEQLNVAHNRFTGVIPSSVCQL  230 (595)
Q Consensus       208 ~L~~L~Ls~N~Lsg~iP~~l~~l  230 (595)
                      +|++|||++|+|+ .++..|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4788888888888 676666543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=94.19  E-value=11  Score=41.40  Aligned_cols=17  Identities=18%  Similarity=0.036  Sum_probs=10.8

Q ss_pred             CCCCCCEEEccCCCCCC
Q 007628           86 SLPKLKYLDLRFNEFEG  102 (595)
Q Consensus        86 ~L~~L~~LdLs~N~l~g  102 (595)
                      ++-.|+..||.+|+|.|
T Consensus        75 rsyFlrl~di~~~rliW   91 (569)
T KOG3671|consen   75 RSYFLRLVDIVNNRLIW   91 (569)
T ss_pred             ceeeeEEeeecCceeee
Confidence            34456777777777653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.97  E-value=0.0086  Score=57.92  Aligned_cols=82  Identities=17%  Similarity=0.214  Sum_probs=43.4

Q ss_pred             CCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcC-chhcCC-CCCCCEEEccCC-CCCCCCCccccc-cCCCe
Q 007628           40 TDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKF-PKLFLS-LPKLKYLDLRFN-EFEGSVPSKLFD-KDLDA  115 (595)
Q Consensus        40 ~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~l-p~~l~~-L~~L~~LdLs~N-~l~g~ip~~l~~-~~L~~  115 (595)
                      ..++.+|-++..|..+--+.|.+|+.|+.|.|.++.-.+-. -+.|.+ ..+|+.|+|++| +|+..--..+.. .+|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            34666777777766666666666666666666665422110 111222 356777777755 444222222222 56666


Q ss_pred             eeccCC
Q 007628          116 IFLNDN  121 (595)
Q Consensus       116 L~L~~N  121 (595)
                      |+|++-
T Consensus       181 L~l~~l  186 (221)
T KOG3864|consen  181 LHLYDL  186 (221)
T ss_pred             HHhcCc
Confidence            666543

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=93.73  E-value=0.03  Score=54.41  Aligned_cols=15  Identities=13%  Similarity=0.370  Sum_probs=9.1

Q ss_pred             CccEEEccCCcCCCC
Q 007628          208 SLEQLNVAHNRFTGV  222 (595)
Q Consensus       208 ~L~~L~Ls~N~Lsg~  222 (595)
                      +|.--||++++|+|.
T Consensus       257 ~LaGadLencnlsG~  271 (302)
T KOG1665|consen  257 NLAGADLENCNLSGA  271 (302)
T ss_pred             cccCCccccCCCCCc
Confidence            345556677777664

>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]

Probab=92.92  E-value=0.056  Score=52.64  Aligned_cols=13  Identities=15%  Similarity=0.153  Sum_probs=5.7

Q ss_pred             CcEEEcccccCCC
Q 007628          233 LQNFTYSFNYFTG  245 (595)
Q Consensus       233 L~~L~Ls~N~Lsg  245 (595)
                      |.--||++++|+|
T Consensus       258 LaGadLencnlsG  270 (302)
T KOG1665|consen  258 LAGADLENCNLSG  270 (302)
T ss_pred             ccCCccccCCCCC
Confidence            3333444444444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.44  E-value=0.01  Score=57.35  Aligned_cols=84  Identities=12%  Similarity=0.115  Sum_probs=47.3

Q ss_pred             CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC-CCccCC-CccceEEeccCc-cccCCCCCCcCCCCC
Q 007628          132 GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL-PPQIGM-LKNLTVFDVSFN-HLQGSLPSSIGNMKS  208 (595)
Q Consensus       132 ~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i-p~~~~~-L~~L~~LdLs~N-~L~g~lP~~l~~L~~  208 (595)
                      .+..++.++-++..|..+.-+.|.++ +.|+.|.+.++.-.+.. -+.++. ..+|+.|+|++| +|+..--..+..+++
T Consensus        99 ~~~~IeaVDAsds~I~~eGle~L~~l-~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn  177 (221)
T KOG3864|consen   99 DNVKIEAVDASDSSIMYEGLEHLRDL-RSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN  177 (221)
T ss_pred             CcceEEEEecCCchHHHHHHHHHhcc-chhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence            34557777777777776666666666 66666666665422110 011222 356777777766 455333344555666


Q ss_pred             ccEEEccC
Q 007628          209 LEQLNVAH  216 (595)
Q Consensus       209 L~~L~Ls~  216 (595)
                      |+.|+|.+
T Consensus       178 Lr~L~l~~  185 (221)
T KOG3864|consen  178 LRRLHLYD  185 (221)
T ss_pred             hHHHHhcC
Confidence            66666543

>PRK15196 secreted effector protein PipB2; Provisional

Probab=91.02  E-value=0.33  Score=51.66  Aligned_cols=7  Identities=0%  Similarity=0.135  Sum_probs=2.5

Q ss_pred             EccCCcC
Q 007628          213 NVAHNRF  219 (595)
Q Consensus       213 ~Ls~N~L  219 (595)
                      +|.+..|
T Consensus       298 df~~a~L  304 (350)
T PRK15196        298 SFISTNL  304 (350)
T ss_pred             EeeCCEe
Confidence            3333333

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.41  E-value=0.22  Score=31.64  Aligned_cols=19  Identities=42%  Similarity=0.709  Sum_probs=10.4

Q ss_pred             CCCCEEEccCCCCCCCCCcc
Q 007628           88 PKLKYLDLRFNEFEGSVPSK  107 (595)
Q Consensus        88 ~~L~~LdLs~N~l~g~ip~~  107 (595)
                      .+|++|+|++|+|+ .++..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45566666666665 44433

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.41  E-value=0.22  Score=31.64  Aligned_cols=19  Identities=42%  Similarity=0.709  Sum_probs=10.4

Q ss_pred             CCCCEEEccCCCCCCCCCcc
Q 007628           88 PKLKYLDLRFNEFEGSVPSK  107 (595)
Q Consensus        88 ~~L~~LdLs~N~l~g~ip~~  107 (595)
                      .+|++|+|++|+|+ .++..
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45566666666665 44433

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.83  E-value=0.2  Score=28.74  Aligned_cols=13  Identities=38%  Similarity=0.542  Sum_probs=5.0

Q ss_pred             CCCEEEccCCCCC
Q 007628           89 KLKYLDLRFNEFE  101 (595)
Q Consensus        89 ~L~~LdLs~N~l~  101 (595)
                      +|++|||++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3455555555543

...

>PRK09718 hypothetical protein; Validated

Probab=89.19  E-value=0.64  Score=50.73  Aligned_cols=12  Identities=0%  Similarity=-0.230  Sum_probs=5.2

Q ss_pred             hhhHHHhhcccc
Q 007628          160 TLNEIILMNDNL  171 (595)
Q Consensus       160 ~L~~L~Ls~N~l  171 (595)
                      .|+.++++.+.+
T Consensus       229 ~LkgVDFSdC~L  240 (512)
T PRK09718        229 RISTGNFKDCIT  240 (512)
T ss_pred             cCCCcccccccc
Confidence            344444444443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.11  E-value=0.21  Score=28.62  Aligned_cols=13  Identities=38%  Similarity=0.733  Sum_probs=4.9

Q ss_pred             CccEEEccCCcCC
Q 007628          208 SLEQLNVAHNRFT  220 (595)
Q Consensus       208 ~L~~L~Ls~N~Ls  220 (595)
                      +|++|+|++|+|+
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3455555555543

...

>PRK09718 hypothetical protein; Validated

Probab=88.06  E-value=1.1  Score=49.04  Aligned_cols=12  Identities=0%  Similarity=-0.219  Sum_probs=5.0

Q ss_pred             cceEEeccCccc
Q 007628          184 NLTVFDVSFNHL  195 (595)
Q Consensus       184 ~L~~LdLs~N~L  195 (595)
                      +|+.+|++.|.+
T Consensus       229 ~LkgVDFSdC~L  240 (512)
T PRK09718        229 RISTGNFKDCIT  240 (512)
T ss_pred             cCCCcccccccc
Confidence            344444444443

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=87.51  E-value=50  Score=36.40  Aligned_cols=18  Identities=39%  Similarity=0.527  Sum_probs=12.0

Q ss_pred             hcCCCCCCEEeccCCcCC
Q 007628           60 FRRLKLLYEVDLSNNRFV   77 (595)
Q Consensus        60 ~~~L~~L~~L~Ls~N~Ls   77 (595)
                      -++.-.|+.+||.+|+|.
T Consensus        73 ~~rsyFlrl~di~~~rli   90 (569)
T KOG3671|consen   73 AQRSYFLRLVDIVNNRLI   90 (569)
T ss_pred             ccceeeeEEeeecCceee
Confidence            345556777888887754

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=87.14  E-value=0.21  Score=55.06  Aligned_cols=65  Identities=29%  Similarity=0.314  Sum_probs=37.7

Q ss_pred             cCCCCCCEEeccCCcCCCcC--chhcCCCCCCCEEEccCC--CCCCCCCc-cccccCCCeeeccCCcccc
Q 007628           61 RRLKLLYEVDLSNNRFVGKF--PKLFLSLPKLKYLDLRFN--EFEGSVPS-KLFDKDLDAIFLNDNRFQF  125 (595)
Q Consensus        61 ~~L~~L~~L~Ls~N~Lsg~l--p~~l~~L~~L~~LdLs~N--~l~g~ip~-~l~~~~L~~L~L~~N~l~~  125 (595)
                      .+...+..|+|++|+|..+.  ...-...++|++|||++|  .+...... .+....|++|.|.+|-+..
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT  284 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence            35566777888888877331  122233567888888888  33211111 1112567788888887653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=85.67  E-value=0.71  Score=29.19  Aligned_cols=17  Identities=47%  Similarity=0.536  Sum_probs=10.8

Q ss_pred             CCCCCEEeccCCcCCCc
Q 007628           63 LKLLYEVDLSNNRFVGK   79 (595)
Q Consensus        63 L~~L~~L~Ls~N~Lsg~   79 (595)
                      |++|++|+|++|+|+.+
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00370        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            35667777777776633

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=85.67  E-value=0.71  Score=29.19  Aligned_cols=17  Identities=47%  Similarity=0.536  Sum_probs=10.8

Q ss_pred             CCCCCEEeccCCcCCCc
Q 007628           63 LKLLYEVDLSNNRFVGK   79 (595)
Q Consensus        63 L~~L~~L~Ls~N~Lsg~   79 (595)
                      |++|++|+|++|+|+.+
T Consensus         1 L~~L~~L~L~~N~l~~l   17 (26)
T smart00369        1 LPNLRELDLSNNQLSSL   17 (26)
T ss_pred             CCCCCEEECCCCcCCcC
Confidence            35667777777776633

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=82.53  E-value=0.63  Score=51.46  Aligned_cols=65  Identities=20%  Similarity=0.198  Sum_probs=34.1

Q ss_pred             CCCCCcEEEccCCcCCCC--CchhhcCCCCCCEEeccCC--cCCCcCchhcCCC--CCCCEEEccCCCCCCCC
Q 007628           38 RLTDLAIFHINSNRFCGV--VPSTFRRLKLLYEVDLSNN--RFVGKFPKLFLSL--PKLKYLDLRFNEFEGSV  104 (595)
Q Consensus        38 ~L~~L~~L~Ls~N~l~~~--lp~~~~~L~~L~~L~Ls~N--~Lsg~lp~~l~~L--~~L~~LdLs~N~l~g~i  104 (595)
                      +...|..|.|++|+|..+  +.+.-....+|+.|+|++|  .+.  ...++.++  ..|++|.|.+|.|...+
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~tf  286 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTTF  286 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccch
Confidence            445566666777766532  1111233466777777777  332  12233332  34667777777766443

>PRK15196 secreted effector protein PipB2; Provisional

Probab=82.36  E-value=0.53  Score=50.10  Aligned_cols=28  Identities=14%  Similarity=0.240  Sum_probs=11.3

Q ss_pred             ccCCCCCCCCchhhcCCCCCcEEEccCCc
Q 007628           23 LNHADIAGYLPPEIGRLTDLAIFHINSNR   51 (595)
Q Consensus        23 Ls~n~i~~~lp~~~~~L~~L~~L~Ls~N~   51 (595)
                      +.++.+.-..+..... .....++++.+.
T Consensus        85 ~~g~~~~~~~~~~~~~-~~~v~v~v~~~~  112 (350)
T PRK15196         85 MDGCRVEFNLPGENNE-AGQVIVRVSKGD  112 (350)
T ss_pred             cCCeEEEecCCCcccc-CCcEEEEEecCC
Confidence            4444444333333222 223445555444

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.23  E-value=0.22  Score=31.02  Aligned_cols=13  Identities=38%  Similarity=0.708  Sum_probs=5.1

Q ss_pred             CccEEEccCCcCC
Q 007628          208 SLEQLNVAHNRFT  220 (595)
Q Consensus       208 ~L~~L~Ls~N~Ls  220 (595)
                      +|++|+|++|+|+
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4444444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	595
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-17
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-12
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-08

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 111/257 (43%), Gaps = 28/257 (10%)
Query: 21  IDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP----STFRRLKL----------- 65
           +D++   ++G     I   T+L + +I+SN+F G +P     + + L L           
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPD 287
Query: 66  --------LYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVP--SKLFDKDLDA 115
                   L  +DLS N F G                   N F G +P  + L  + L  
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 116 IFLNDNRFQFGIPENLGNSPVSVLVF---ANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172
           + L+ N F   +PE+L N   S+L     +NN  G  +P        TL E+ L N+  T
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPN 232
           G +PP +     L    +SFN+L G++PSS+G++  L  L +  N   G IP  +  +  
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 233 LQNFTYSFNYFTGEPPS 249
           L+     FN  TGE PS
Sbjct: 468 LETLILDFNDLTGEIPS 484

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 112/261 (42%), Gaps = 28/261 (10%)
Query: 17  VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP----STFRRLKL------- 65
            +  +D++   ++G     I   T+L + +I+SN+F G +P     + + L L       
Sbjct: 221 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTG 280
Query: 66  ------------LYEVDLSNNRFVGXXXXXXXXXXXXXXXXXRFNEFEGSVP--SKLFDK 111
                       L  +DLS N F G                   N F G +P  + L  +
Sbjct: 281 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 340
Query: 112 DLDAIFLNDNRFQFGIPENLGNSPVSVLVF---ANNDLGGCIPGSIGKMGKTLNEIILMN 168
            L  + L+ N F   +PE+L N   S+L     +NN  G  +P        TL E+ L N
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVC 228
           +  TG +PP +     L    +SFN+L G++PSS+G++  L  L +  N   G IP  + 
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 229 QLPNLQNFTYSFNYFTGEPPS 249
            +  L+     FN  TGE PS
Sbjct: 461 YVKTLETLILDFNDLTGEIPS 481

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 98/232 (42%), Gaps = 13/232 (5%)
Query: 27  DIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGXXXXXXXX 86
           ++ G +PP I +LT L   +I      G +P    ++K L  +D S N   G        
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147
Query: 87  XXXXXXXXXRFNEFEGSVPSKL--FDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANN 144
                      N   G++P     F K   ++ ++ NR    IP    N  ++ +  + N
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207
Query: 145 DLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIG 204
            L G      G   K   +I L  ++L   L  ++G+ KNL   D+  N + G+LP  + 
Sbjct: 208 MLEGDASVLFGS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 205 NMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNF---TYSFNY-FTGEP-PSCT 251
            +K L  LNV+ N   G IP    Q  NLQ F    Y+ N    G P P+CT
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP----QGGNLQRFDVSAYANNKCLCGSPLPACT 313

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Query: 127 IPENLGNSPVSVLVFAN--NDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKN 184
           IP +L N P    ++    N+L G IP +I K+ + L+ + + + N++G +P  +  +K 
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKT 126
Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNL-QNFTYSFNYF 243
           L   D S+N L G+LP SI ++ +L  +    NR +G IP S      L  + T S N  
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 244 TGEPP 248
           TG+ P
Sbjct: 187 TGKIP 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	595
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-34
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-55
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-53
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-51
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-50
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-37
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-36
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-35
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-37
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-33
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-32
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-35
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-34
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-30
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-33
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-32
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-30
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-23
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-18
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-16
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	4e-16
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-13
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	9e-09
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-08
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	9e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-17
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-17
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-16
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-14
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	9e-12
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-11
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	9e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-09
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-09
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-08
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	4e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	8e-07
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	1e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-08
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	9e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	4e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	7e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-07
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	8e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	4e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	5e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-06
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-07
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	2e-06
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	1e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	9e-05
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	5e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	6e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	7e-04
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	8e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-06
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	3e-06
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	4e-06
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	1e-04
3tx7_B	352	Nuclear receptor subfamily 5 group A member 2; LRH	8e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	4e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	8e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-04
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	8e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	6e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	4e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  194 bits (496), Expect = 2e-57
 Identities = 62/254 (24%), Positives = 104/254 (40%), Gaps = 13/254 (5%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAG--YLPPEIGRLTDLAIFHI-NSNRFCGVVPS 58
           GV C            V ++DL+  ++     +P  +  L  L   +I   N   G +P 
Sbjct: 40  GVLCD----TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 59  TFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIF 117
              +L  L+ + +++    G  P     +  L  LD  +N   G++P  +    +L  I 
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 118 LNDNRFQFGIPENLGN--SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL 175
            + NR    IP++ G+     + +  + N L G IP +   +   L  + L  + L G  
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDA 213

Query: 176 PPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQN 235
               G  KN     ++ N L   L   +G  K+L  L++ +NR  G +P  + QL  L +
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 236 FTYSFNYFTGEPPS 249
              SFN   GE P 
Sbjct: 273 LNVSFNNLCGEIPQ 286

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  183 bits (468), Expect = 2e-53
 Identities = 69/245 (28%), Positives = 105/245 (42%), Gaps = 9/245 (3%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
           N P L  +    +N+  + G +PP I +LT L   +I      G +P    ++K L  +D
Sbjct: 74  NLPYLNFLYIGGINN--LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 71  LSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIP 128
            S N   G  P    SLP L  +    N   G++P       K   ++ ++ NR    IP
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 129 ENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVF 188
               N  ++ +  + N L G      G   K   +I L  ++L   L  ++G+ KNL   
Sbjct: 192 PTFANLNLAFVDLSRNMLEGDASVLFGSD-KNTQKIHLAKNSLAFDLG-KVGLSKNLNGL 249

Query: 189 DVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT-GEP 247
           D+  N + G+LP  +  +K L  LNV+ N   G IP     L       Y+ N    G P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308

Query: 248 -PSCT 251
            P+CT
Sbjct: 309 LPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (328), Expect = 8e-34
 Identities = 49/209 (23%), Positives = 79/209 (37%), Gaps = 30/209 (14%)

Query: 46  HINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVG--KFPKLFLSLPKLKYLDLR-FNEFEG 102
              +  + GV+  T  +   +  +DLS          P    +LP L +L +   N   G
Sbjct: 32  DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91

Query: 103 SVPSKLFDKDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTL 161
                                   IP  +   + +  L   + ++ G IP  + ++ KTL
Sbjct: 92  P-----------------------IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI-KTL 127

Query: 162 NEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQ-LNVAHNRFT 220
             +    + L+G LPP I  L NL       N + G++P S G+   L   + ++ NR T
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 221 GVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           G IP +   L NL     S N   G+   
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASV 215

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  200 bits (510), Expect = 1e-55
 Identities = 76/245 (31%), Positives = 119/245 (48%), Gaps = 10/245 (4%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRLKLLYEV 69
              +L     +DL+     G +PP  G  + L    ++SN F G +P  T  +++ L  +
Sbjct: 292 ACDTLTG---LDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVL 348

Query: 70  DLSNNRFVGKFPKLFLSL-PKLKYLDLRFNEFEGSVPSKLFD---KDLDAIFLNDNRFQF 125
           DLS N F G+ P+   +L   L  LDL  N F G +   L       L  ++L +N F  
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408

Query: 126 GIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKN 184
            IP  L N   +  L  + N L G IP S+G +   L ++ L  + L G +P ++  +K 
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKT 467

Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
           L    + FN L G +PS + N  +L  +++++NR TG IP  + +L NL     S N F+
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527

Query: 245 GEPPS 249
           G  P+
Sbjct: 528 GNIPA 532

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  193 bits (493), Expect = 2e-53
 Identities = 76/269 (28%), Positives = 118/269 (43%), Gaps = 31/269 (11%)

Query: 10  FNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPST---------- 59
            +  +L+    +D++   ++G     I   T+L + +I+SN+F G +P            
Sbjct: 220 GDCSALQH---LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSL 276

Query: 60  -------------FRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPS 106
                              L  +DLS N F G  P  F S   L+ L L  N F G +P 
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336

Query: 107 KLFDK--DLDAIFLNDNRFQFGIPENLGNSPVS--VLVFANNDLGGCIPGSIGKMGKT-L 161
               K   L  + L+ N F   +PE+L N   S   L  ++N+  G I  ++ +  K  L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 162 NEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTG 221
            E+ L N+  TG +PP +     L    +SFN+L G++PSS+G++  L  L +  N   G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 222 VIPSSVCQLPNLQNFTYSFNYFTGEPPSC 250
            IP  +  +  L+     FN  TGE PS 
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSG 485

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  188 bits (480), Expect = 2e-51
 Identities = 67/247 (27%), Positives = 115/247 (46%), Gaps = 10/247 (4%)

Query: 10  FNSPSLRVVASIDLNHADIAGYLPPE-IGRLTDLAIFHINSNRFCGVVPSTFRRLKL-LY 67
            +   L     + L+  + +G LP + + ++  L +  ++ N F G +P +   L   L 
Sbjct: 315 GSCSLLES---LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371

Query: 68  EVDLSNNRFVGKFPKLF--LSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQ 124
            +DLS+N F G             L+ L L+ N F G +P  L +  +L ++ L+ N   
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431

Query: 125 FGIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLK 183
             IP +LG+   +  L    N L G IP  +  +   L  +IL  ++LTG +P  +    
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT-LETLILDFNDLTGEIPSGLSNCT 490

Query: 184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243
           NL    +S N L G +P  IG +++L  L +++N F+G IP+ +    +L     + N F
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550

Query: 244 TGEPPSC 250
            G  P+ 
Sbjct: 551 NGTIPAA 557

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  183 bits (467), Expect = 8e-50
 Identities = 61/264 (23%), Positives = 108/264 (40%), Gaps = 28/264 (10%)

Query: 10  FNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
               +L     + L+  D+ G +P  +   T+L    +++NR  G +P    RL+ L  +
Sbjct: 463 MYVKTLET---LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519

Query: 70  DLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLF-------------------- 109
            LSNN F G  P        L +LDL  N F G++P+ +F                    
Sbjct: 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIK 579

Query: 110 -DKDLDAIFLNDNRFQF--GIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEII 165
            D          N  +F     E L   S  +     +   GG    +      ++  + 
Sbjct: 580 NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN-GSMMFLD 638

Query: 166 LMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPS 225
           +  + L+G +P +IG +  L + ++  N + GS+P  +G+++ L  L+++ N+  G IP 
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698

Query: 226 SVCQLPNLQNFTYSFNYFTGEPPS 249
           ++  L  L     S N  +G  P 
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  182 bits (463), Expect = 2e-49
 Identities = 72/246 (29%), Positives = 113/246 (45%), Gaps = 13/246 (5%)

Query: 10  FNSPSLRVVASIDLNHADIAGYLPPEIGRLT-DLAIFHINSNRFCGVVPSTFRRLKL--L 66
                L+    +DL+  + +G LP  +  L+  L    ++SN F G +     +     L
Sbjct: 340 LKMRGLK---VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396

Query: 67  YEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQF 125
            E+ L NN F GK P    +  +L  L L FN   G++PS L     L  + L  N  + 
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 126 GIPENLGNSPV-SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKN 184
            IP+ L        L+   NDL G IP  +      LN I L N+ LTG +P  IG L+N
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEIPKWIGRLEN 515

Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
           L +  +S N   G++P+ +G+ +SL  L++  N F G IP+++ +         + N+  
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI----AANFIA 571

Query: 245 GEPPSC 250
           G+    
Sbjct: 572 GKRYVY 577

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  180 bits (460), Expect = 7e-49
 Identities = 65/265 (24%), Positives = 113/265 (42%), Gaps = 30/265 (11%)

Query: 12  SPSLRVVASIDLNHADIAGYLPPEIGR--LTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
           S SL     +DL+  + +G + P + +     L   ++ +N F G +P T      L  +
Sbjct: 367 SASLLT---LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423

Query: 70  DLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIP 128
            LS N   G  P    SL KL+ L L  N  EG +P +L   K L+ + L+ N     IP
Sbjct: 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIP 483

Query: 129 ENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTV 187
             L N + ++ +  +NN L G IP  IG++   L  + L N++ +G +P ++G  ++L  
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN-LAILKLSNNSFSGNIPAELGDCRSLIW 542

Query: 188 FDVSFNHLQGSLPSS--------------------IGNMKSLEQLNVAHN--RFTGVIPS 225
            D++ N   G++P++                    I N    ++ + A N   F G+   
Sbjct: 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602

Query: 226 SVCQLPNLQNFTYSFNYFTGEPPSC 250
            + +L        +   + G     
Sbjct: 603 QLNRLSTRNPCNITSRVYGGHTSPT 627

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  163 bits (416), Expect = 4e-43
 Identities = 60/259 (23%), Positives = 99/259 (38%), Gaps = 26/259 (10%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIA---GYLPPEIGRLTDLAIFHINSNRFCGVVPS 58
           GV C            V SIDL+   +      +   +  LT L    ++++   G V  
Sbjct: 44  GVTC--------RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG 95

Query: 59  TFRRLKLLYEVDLSNNRFVGKFPKL--FLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLD 114
            F+    L  +DLS N   G    L    S   LK+L++  N  +             L+
Sbjct: 96  -FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154

Query: 115 AIFLNDNRFQFGIPENL---GNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDN 170
            + L+ N                  +  L  + N + G +   + +    L  + + ++N
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRC-VNLEFLDVSSNN 211

Query: 171 LTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQL 230
            +  +P  +G    L   D+S N L G    +I     L+ LN++ N+F G IP     L
Sbjct: 212 FSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268

Query: 231 PNLQNFTYSFNYFTGEPPS 249
            +LQ  + + N FTGE P 
Sbjct: 269 KSLQYLSLAENKFTGEIPD 287

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  159 bits (404), Expect = 2e-41
 Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 16/233 (6%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
              +L +   + L++   +G +P E+G    L    +N+N F G +P+   +        
Sbjct: 512 RLENLAI---LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----K 564

Query: 71  LSNNRFVGKFPKLFLSLPKLKYLDLRFN--EFEGSVPSKLFD-KDLDAIFLNDNRFQFGI 127
           ++ N   GK      +    K      N  EF+G    +L      +   +    +    
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

Query: 128 PENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLT 186
                N   +  L  + N L G IP  IG M   L  + L +++++G +P ++G L+ L 
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLN 683

Query: 187 VFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYS 239
           + D+S N L G +P ++  +  L ++++++N  +G IP         + F  +
Sbjct: 684 ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM----GQFETFPPA 732

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  154 bits (391), Expect = 9e-40
 Identities = 50/226 (22%), Positives = 84/226 (37%), Gaps = 21/226 (9%)

Query: 37  GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96
            ++T + +     N     V S+   L  L  + LSN+   G     F     L  LDL 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLS 108

Query: 97  FNEFEGSVP--------SKLFDKDLDAIFLNDNRFQFGIPENLGNSPVS--VLVFANNDL 146
            N   G V         S L  K L+   ++ N   F    + G    S  VL  + N +
Sbjct: 109 RNSLSGPVTTLTSLGSCSGL--KFLN---VSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163

Query: 147 GGCIPGSIGKMGK--TLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIG 204
            G              L  + +  + ++G +   +    NL   DVS N+    +P  +G
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LG 220

Query: 205 NMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSC 250
           +  +L+ L+++ N+ +G    ++     L+    S N F G  P  
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL 266

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.0 bits (206), Expect = 1e-16
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 133 NSPVSVLVFANNDL---GGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD 189
           +  V+ +  ++  L      +  S+  +   L  + L N ++ G +        +LT  D
Sbjct: 49  DDKVTSIDLSSKPLNVGFSAVSSSLLSL-TGLESLFLSNSHINGSVSG-FKCSASLTSLD 106

Query: 190 VSFNHLQGSLPS--SIGNMKSLEQLNVAHNRFTGVIP-SSVCQLPNLQNFTYSFNYFTGE 246
           +S N L G + +  S+G+   L+ LNV+ N        S   +L +L+    S N  +G 
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166

Query: 247 PPSCTAAAG 255
                  + 
Sbjct: 167 NVVGWVLSD 175

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  147 bits (373), Expect = 7e-38
 Identities = 40/258 (15%), Positives = 79/258 (30%), Gaps = 42/258 (16%)

Query: 10  FNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
                L +   ++  +  + G   P  G    LA  ++  N+   +  +     + +  +
Sbjct: 327 QKMKKLGM---LECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382

Query: 70  DLSNNRFVGKFPKLFL--SLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGI 127
             ++N+     P +F   S+  +  +D  +NE                  ++   F   +
Sbjct: 383 SFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGS---------------VDGKNFD-PL 425

Query: 128 PENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG-------CLPPQI 179
                    VS +  +NN +              L+ I LM + LT              
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFPKELFSTG-SPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 180 GMLKNLTVFDVSFNHLQGSLPSSI--GNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQ--- 234
                LT  D+ FN L   L        +  L  +++++N F+   P+       L+   
Sbjct: 485 KNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542

Query: 235 ---NFTYSFNYFTGEPPS 249
                    N    E P 
Sbjct: 543 IRNQRDAQGNRTLREWPE 560

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  146 bits (371), Expect = 1e-37
 Identities = 40/259 (15%), Positives = 80/259 (30%), Gaps = 34/259 (13%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGV--------VPSTFRRLKLLYEVDL 71
            +++ +      LP  +  L ++ + ++  NR              +     + +  + +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 72  SNNRF-VGKFPKLFLSLPKLKYLDLRFNEFEGSVPS--KLFDKDLDAIFLNDNRFQFGIP 128
             N             + KL  L+  +N+ EG +P+        L ++ L  N+    IP
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE--IKLASLNLAYNQIT-EIP 369

Query: 129 ENLGNSPVS--VLVFANNDLGGCIP--GSIGKMGKTLNEIILMNDNLTGC-------LPP 177
            N          L FA+N L   IP       +   ++ I    + +          L P
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSV-SVMSAIDFSYNEIGSVDGKNFDPLDP 427

Query: 178 QIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV-------IPSSVCQL 230
                 N++  ++S N +             L  +N+  N  T +          +    
Sbjct: 428 TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487

Query: 231 PNLQNFTYSFNYFTGEPPS 249
             L +    FN  T     
Sbjct: 488 YLLTSIDLRFNKLTKLSDD 506

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  142 bits (361), Expect = 3e-36
 Identities = 42/271 (15%), Positives = 97/271 (35%), Gaps = 45/271 (16%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCG-------------------VVPSTF 60
            I     +I   +   + RLT L  F++ ++ F                          +
Sbjct: 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245

Query: 61  RRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEF--------EGSVPSKLFD-K 111
             LK L +V++ N   + K P    +LP+++ +++  N          +    +     +
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGE 305

Query: 112 DLDAIFLNDNRFQFG-IPENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMND 169
            +  I++  N  +   +  +L     + +L    N L G +P + G   K L  + L  +
Sbjct: 306 KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK-LASLNLAYN 363

Query: 170 NLTGCLPPQI-GMLKNLTVFDVSFNHLQGSLPS--SIGNMKSLEQLNVAHNRFTGV---- 222
            +T  +P    G  + +     + N L+  +P+     ++  +  ++ ++N    V    
Sbjct: 364 QITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 223 ---IPSSVCQLPNLQNFTYSFNYFTGEPPSC 250
              +  +  +  N+ +   S N  +  P   
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKEL 452

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  140 bits (354), Expect = 2e-35
 Identities = 45/265 (16%), Positives = 75/265 (28%), Gaps = 36/265 (13%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTF-RRLKLLYE 68
           +   L     ++L +  I   +P    G    +       N+   +      + + ++  
Sbjct: 351 SEIKLAS---LNLAYNQITE-IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 69  VDLSNNRFVGKFPKLFLSLP-------KLKYLDLRFNEFEGSVPSKLFDK--DLDAIFLN 119
           +D S N       K F  L         +  ++L  N+        LF     L +I L 
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE-LFSTGSPLSSINLM 465

Query: 120 DNRFQ-------FGIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMG-KTLNEIILMNDN 170
            N              EN  N+  ++ +    N L   +           L  I L  ++
Sbjct: 466 GNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNS 524

Query: 171 LTGCLPPQIGMLKNLTVF------DVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIP 224
            +   P Q      L  F      D   N      P  I    SL QL +  N     + 
Sbjct: 525 FSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VN 582

Query: 225 SSVCQLPNLQNFTYSFNYFTGEPPS 249
             +   PN+       N       S
Sbjct: 583 EKI--TPNISVLDIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  139 bits (351), Expect = 5e-35
 Identities = 34/265 (12%), Positives = 68/265 (25%), Gaps = 31/265 (11%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCG----VVP 57
           GV    +         V  + L     +G +P  IG+LT+L +  + S+          P
Sbjct: 74  GVSLNSNGR-------VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 58  STFRRLKLLYEVDLSNNRFVGKFPKL--FLSLPKLKYLDLRFNEFEGSVPSKLF-DKDLD 114
                     +       +   F           L    +  +  + S+           
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 115 AIFLNDNRFQFGIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG 173
            I    N     + + +     +      N+           +                 
Sbjct: 187 QIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN------SEYAQQYK 239

Query: 174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV--------IPS 225
               +   LK+LT  +V        LP+ +  +  ++ +NVA NR              +
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299

Query: 226 SVCQLPNLQNFTYSFNYF-TGEPPS 249
                  +Q     +N   T    +
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVET 324

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  135 bits (343), Expect = 7e-34
 Identities = 31/257 (12%), Positives = 78/257 (30%), Gaps = 36/257 (14%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPP--EIGRLTDLAIFHINSNRFCGVVPSTFR------- 61
            +  +     +   H  +   +P   +   ++ ++    + N    V    F        
Sbjct: 375 FTEQVEN---LSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAI----- 116
           +   +  ++LSNN+      +LF +   L  ++L  N     +P      + +       
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYL 489

Query: 117 ----FLNDNRFQFGIPENLGNSPVS---VLVFANNDLGGCIPGSIGKMGK-----TLNEI 164
                L  N+    + ++   + +     +  + N      P               N+ 
Sbjct: 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547

Query: 165 ILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIP 224
               +      P  I +  +LT   +  N ++  +   I    ++  L++  N    +  
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI--TPNISVLDIKDNPNISIDL 604

Query: 225 SSVCQLPNLQNFTYSFN 241
           S VC       +   ++
Sbjct: 605 SYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.1 bits (224), Expect = 4e-19
 Identities = 32/206 (15%), Positives = 71/206 (34%), Gaps = 26/206 (12%)

Query: 8   SPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGV-------VPSTF 60
           +PF   ++     I+L++  I+ +        + L+  ++  N    +           F
Sbjct: 428 TPFKGINVSS---INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 61  RRLKLLYEVDLSNNRFVGKFPK--LFLSLPKLKYLDLRFNEFEGSVPSKLFD----KDLD 114
           +   LL  +DL  N+            +LP L  +DL +N F    P++  +    K   
Sbjct: 485 KNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFG 542

Query: 115 A---IFLNDNRFQFGIPENLGNSPV-SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDN 170
                    NR     PE +   P  + L   +ND+   +   I      ++ + + ++ 
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITP---NISVLDIKDNP 598

Query: 171 LTGCLPPQIGMLKNLTVFDVSFNHLQ 196
                   +       ++ + ++  Q
Sbjct: 599 NISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 8/62 (12%), Positives = 21/62 (33%)

Query: 188 FDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP 247
           F+   +        S+ +   +  L++     +G +P ++ QL  L+      +      
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE 121

Query: 248 PS 249
             
Sbjct: 122 RL 123

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  145 bits (369), Expect = 2e-37
 Identities = 42/229 (18%), Positives = 73/229 (31%), Gaps = 7/229 (3%)

Query: 23  LNHADIAGYLPPEIGRLTDLAIFHI--NSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKF 80
           L      G        L  L    +  N   F G    +      L  +DLS N  +   
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388

Query: 81  PKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENLGNSP-VS 137
              FL L +L++LD + +  +      +F   ++L  + ++    +            + 
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 138 VLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG 197
           VL  A N         I    + L  + L    L    P     L +L V ++S N+   
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS 508

Query: 198 SLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLP-NLQNFTYSFNYFTG 245
                   + SL+ L+ + N         +   P +L     + N F  
Sbjct: 509 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  134 bits (339), Expect = 2e-33
 Identities = 45/241 (18%), Positives = 86/241 (35%), Gaps = 13/241 (5%)

Query: 14  SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSN 73
            L  V+S  L    I      +           + + +F        + LK L     ++
Sbjct: 280 CLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTS 334

Query: 74  NRFVGKFPKLFLSLPKLKYLDLRFN--EFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPEN 130
           N+    F    + LP L++LDL  N   F+G      F    L  + L+ N     +  N
Sbjct: 335 NKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 131 LGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD 189
                 +  L F +++L      S+    + L  + + + +           L +L V  
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 190 VSFNHLQGSL-PSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248
           ++ N  Q +  P     +++L  L+++  +   + P++   L +LQ    S N F     
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

Query: 249 S 249
            
Sbjct: 512 F 512

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  131 bits (332), Expect = 1e-32
 Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 14/230 (6%)

Query: 5   CARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRL 63
           C++S F + SL+    +DL+   +   +      L  L       +    +   S F  L
Sbjct: 365 CSQSDFGTTSLKY---LDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 64  KLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDN 121
           + L  +D+S+      F  +F  L  L+ L +  N F+ +    +F   ++L  + L+  
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 122 RFQFGIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI- 179
           + +   P    +   + VL  ++N+           +  +L  +    +++      Q  
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL-NSLQVLDYSLNHIMT-SKKQEL 538

Query: 180 -GMLKNLTVFDVSFNHLQGSLPSS--IGNMKSLEQLNVAHNRFTGVIPSS 226
                +L   +++ N    +      +  +K   QL V   R     PS 
Sbjct: 539 QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  122 bits (307), Expect = 2e-29
 Identities = 36/242 (14%), Positives = 70/242 (28%), Gaps = 12/242 (4%)

Query: 12  SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL 71
             S +    +DL+   +            +L +  ++      +    ++ L  L  + L
Sbjct: 27  PFSTKN---LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 72  SNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQ-FGIPE 129
           + N         F  L  L+ L              +   K L  + +  N  Q F +PE
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 130 NLGNSP-VSVLVFANNDLGGCIPGSIGKMGK--TLNEIILMNDNLTGCLPPQIGMLKNLT 186
              N   +  L  ++N +       +  + +   LN  + ++ N    + P       L 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203

Query: 187 VFDVSFNHLQGSLPS-SIGNMKSLEQLNVAHNRFTGVI---PSSVCQLPNLQNFTYSFNY 242
              +  N    ++    I  +  LE   +    F             L  L N T     
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 243 FT 244
             
Sbjct: 264 LA 265

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  117 bits (296), Expect = 5e-28
 Identities = 41/278 (14%), Positives = 78/278 (28%), Gaps = 41/278 (14%)

Query: 8   SPFNSPSLRVVASIDLNHADIAGYLPPE-IGRLTDLAIFHINSNRFCG------VVPSTF 60
             F    L     + L +   +  +    I  L  L +  +    F           S  
Sbjct: 195 GAFKEIRLH---KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL 251

Query: 61  RRLKLLYEVDLSNNR---FVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIF 117
             L  L   +        ++     LF  L  +    L     E       ++     + 
Sbjct: 252 EGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS-YNFGWQHLE 310

Query: 118 LNDNRFQFGIPE-------------NLGNSPVS--------VLVFANNDLG--GCIPGSI 154
           L + +F    P              N G +  S         L  + N L   GC   S 
Sbjct: 311 LVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 155 GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQLN 213
                +L  + L  + +   +      L+ L   D   ++L+     S+  ++++L  L+
Sbjct: 370 FGT-TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 214 VAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCT 251
           ++H             L +L+    + N F        
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  113 bits (286), Expect = 1e-26
 Identities = 39/223 (17%), Positives = 72/223 (32%), Gaps = 31/223 (13%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
           +P  +          ++ N    +   +F     L  +DLS           + SL  L 
Sbjct: 22  IPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79

Query: 92  YLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIP 151
            L L  N  +  +    F                     L +  +  LV    +L     
Sbjct: 80  TLILTGNPIQS-LALGAF-------------------SGLSS--LQKLVAVETNLASLEN 117

Query: 152 GSIGKMGKTLNEIILMNDNLTGC-LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLE 210
             IG + KTL E+ + ++ +    LP     L NL   D+S N +Q    + +  +  + 
Sbjct: 118 FPIGHL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 211 ----QLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
                L+++ N    + P +  +   L   T   N+ +     
Sbjct: 177 LLNLSLDLSLNPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMK 218

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.7 bits (197), Expect = 8e-16
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 7/139 (5%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR 61
             F         +L     +DL+   +    P     L+ L + +++ N F  +    ++
Sbjct: 459 ENFLPDIFTELRNLTF---LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPK-LKYLDLRFNEFEGSVPSKLFD---KDLDAIF 117
            L  L  +D S N  +    +     P  L +L+L  N+F  +   + F    KD   + 
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 575

Query: 118 LNDNRFQFGIPENLGNSPV 136
           +   R +   P +    PV
Sbjct: 576 VEVERMECATPSDKQGMPV 594

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  139 bits (353), Expect = 4e-35
 Identities = 44/257 (17%), Positives = 98/257 (38%), Gaps = 22/257 (8%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKL--LYE 68
              +L    ++DL+H  ++        +L +L    +++N+   +            L +
Sbjct: 119 KQKNLI---TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 69  VDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKD----LDAIFLNDNRFQ 124
           ++LS+N+     P  F ++ +L  L L   +   S+  KL  +     +  + L++++  
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 125 FGIPE---NLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM 181
                    L  + +++L  + N+L      S   + + L    L  +N+       +  
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ-LEYFFLEYNNIQHLFSHSLHG 294

Query: 182 LKNLTVFD---------VSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPN 232
           L N+   +         +S   L      S   +K LE LN+  N   G+  +    L N
Sbjct: 295 LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLIN 354

Query: 233 LQNFTYSFNYFTGEPPS 249
           L+  + S ++ +    +
Sbjct: 355 LKYLSLSNSFTSLRTLT 371

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  138 bits (349), Expect = 1e-34
 Identities = 46/252 (18%), Positives = 82/252 (32%), Gaps = 34/252 (13%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFH---------INSNRFCGVVPSTFR 61
             P L       L + +I       +  L ++   +         I+      +   +F+
Sbjct: 270 WLPQLEY---FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
            LK L  +++ +N   G    +F  L  LKYL L  +                  F +  
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS------------------FTSLR 368

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQ-IG 180
                   +L +SP+ +L    N +      +   +G  L  + L  + +   L  Q   
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELTGQEWR 427

Query: 181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV--IPSSVCQLPNLQNFTY 238
            L+N+    +S+N       +S   + SL++L +       V   PS    L NL     
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487

Query: 239 SFNYFTGEPPSC 250
           S N         
Sbjct: 488 SNNNIANINDDM 499

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  136 bits (345), Expect = 5e-34
 Identities = 37/257 (14%), Positives = 87/257 (33%), Gaps = 23/257 (8%)

Query: 11  NSPSLRVVASIDLNHADI-AGYLPPEIGR---LTDLAIFHINSNRFCGVVPSTFRRLKLL 66
              +L+    + L+++      L  E       + L I ++  N+   +    F  L  L
Sbjct: 351 GLINLKY---LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407

Query: 67  YEVDLSNNRFVGKFP-KLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRF 123
             +DL  N    +   + +  L  +  + L +N++   +    F     L  + L     
Sbjct: 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVAL 466

Query: 124 QF--GIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT-------- 172
           +     P        +++L  +NN++       +  + + L  + L ++NL         
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANP 525

Query: 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPN 232
           G     +  L +L + ++  N           ++  L+ +++  N    +  S      +
Sbjct: 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585

Query: 233 LQNFTYSFNYFTGEPPS 249
           L++     N  T     
Sbjct: 586 LKSLNLQKNLITSVEKK 602

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  133 bits (338), Expect = 4e-33
 Identities = 39/251 (15%), Positives = 87/251 (34%), Gaps = 14/251 (5%)

Query: 9   PFNSP-SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLY 67
           P + P ++     ++L H  +         R + L    +  N    + P   ++L +L 
Sbjct: 20  PDDLPTNIT---VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76

Query: 68  EVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQF 125
            ++L +N       K F     L  L L  N  +  + +  F   K+L  + L+ N    
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 126 GIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMG-KTLNEIILMNDNLTGCLPPQIGMLK 183
                      +  L+ +NN +       +      +L ++ L ++ +    P     + 
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 184 NLTVFDVSFNHLQGSLPSSIG---NMKSLEQLNVAHNRFTGVIPSSV--CQLPNLQNFTY 238
            L    ++   L  SL   +       S+  L++++++ +    ++    +  NL     
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 239 SFNYFTGEPPS 249
           S+N        
Sbjct: 256 SYNNLNVVGND 266

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  125 bits (317), Expect = 2e-30
 Identities = 49/245 (20%), Positives = 80/245 (32%), Gaps = 26/245 (10%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPP-EIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
               L V   +DL   +I   L   E   L ++   +++ N++  +  ++F  +  L  +
Sbjct: 403 WLGHLEV---LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459

Query: 70  DLSNNRF--VGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFG 126
            L       V   P  F  L  L  LDL  N         L   + L+ + L  N     
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR- 518

Query: 127 IPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQ-IGMLKNL 185
                            +   G     +  +   L+ + L ++     +P +    L  L
Sbjct: 519 --------------LWKHANPGGPIYFLKGLSH-LHILNLESNGFDE-IPVEVFKDLFEL 562

Query: 186 TVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVC-QLPNLQNFTYSFNYFT 244
            + D+  N+L     S   N  SL+ LN+  N  T V          NL      FN F 
Sbjct: 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

Query: 245 GEPPS 249
               S
Sbjct: 623 CTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  123 bits (311), Expect = 8e-30
 Identities = 44/242 (18%), Positives = 82/242 (33%), Gaps = 33/242 (13%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
              +L     + L    I         +  +L    ++ N        T  +L+ L E+ 
Sbjct: 95  FCTNLT---ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL 151

Query: 71  LSNNRFVGKFPKLF--LSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGI 127
           LSNN+      +     +   LK L+L  N+ +   P        L  +FLN+ +    +
Sbjct: 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 128 PENLG----NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLK 183
            E L     N+ +  L  +N+ L      +   +  T                       
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT----------------------- 248

Query: 184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243
           NLT+ D+S+N+L      S   +  LE   + +N    +   S+  L N++      ++ 
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 244 TG 245
             
Sbjct: 309 KQ 310

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  110 bits (278), Expect = 1e-25
 Identities = 44/239 (18%), Positives = 82/239 (34%), Gaps = 55/239 (23%)

Query: 14  SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSN 73
           S  V    D +H  +   +P ++   T++ + ++  N+   +  + F R   L  +D+  
Sbjct: 5   SHEVA---DCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 74  NRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGN 133
           N      P+L   LP LK L+L+ NE    +  K F                    NL  
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAF----------------CTNL-- 99

Query: 134 SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFN 193
              + L   +N +         K                          KNL   D+S N
Sbjct: 100 ---TELHLMSNSIQKIKNNPFVK-------------------------QKNLITLDLSHN 131

Query: 194 HLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPS--SVCQLPNLQNFTYSFNYFTGEPPSC 250
            L  +   +   +++L++L +++N+   +      +    +L+    S N      P C
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (267), Expect = 3e-24
 Identities = 42/236 (17%), Positives = 75/236 (31%), Gaps = 24/236 (10%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGV--VPSTFRRLKLLYE 68
              ++     I L++             +  L    +       V   PS F+ L+ L  
Sbjct: 428 GLENIFE---IYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484

Query: 69  VDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFE-------GSVPSKLFD--KDLDAIFLN 119
           +DLSNN        +   L KL+ LDL+ N             P         L  + L 
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544

Query: 120 DNRFQFGIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQ 178
            N F     E   +   + ++    N+L             +L  + L  + +T  +  +
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ-VSLKSLNLQKNLITS-VEKK 602

Query: 179 I--GMLKNLTVFDVSFNHLQGSLPSSIGNMKSL-EQLNVAHNRFTGVIPSSVCQLP 231
           +     +NLT  D+ FN    +      ++      +N  H     +    +C  P
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCE----SIAWFVNWINETHTNIPELSSHYLCNTP 654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  135 bits (341), Expect = 2e-33
 Identities = 43/249 (17%), Positives = 76/249 (30%), Gaps = 24/249 (9%)

Query: 18  VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFV 77
           V  + L      G +P  IG+LT+L +    ++                   +   +R  
Sbjct: 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIR 384

Query: 78  GKFPKLFLS-LPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQF------GIPEN 130
             + K+FL    +L   DL  +      P     K    I L D +          I + 
Sbjct: 385 MHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443

Query: 131 LGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD 189
           +   + + ++ FAN+                  +                  LK+LT  +
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNIAVD------WEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 190 VSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV---------IPSSVCQLPNLQNFTYSF 240
           +        LP  + ++  L+ LN+A NR             +       P +Q F   +
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 241 NYFTGEPPS 249
           N     P S
Sbjct: 558 NNLEEFPAS 566

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  132 bits (334), Expect = 2e-32
 Identities = 39/267 (14%), Positives = 73/267 (27%), Gaps = 37/267 (13%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGV---------VPSTFR 61
           N   L     ++L +      LP  +  L +L   +I  NR             +     
Sbjct: 489 NLKDLTD---VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 62  RLKLLYEVDLSNNRFVG-KFPKLFLSLPKLKYLDLRFNEFEGSVPS--KLFDKDLDAIFL 118
               +    +  N             + KL  LD   N+    + +        L  + L
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTN--VKLTDLKL 602

Query: 119 NDNRFQFGIPENLGNSPVS--VLVFANNDLGGCIPGSIGKMG-KTLNEIILMNDNLTGCL 175
           + N+ +  IPE+          L F++N L   IP          +  +    + +    
Sbjct: 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGS-E 659

Query: 176 PPQIGM------LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFT-------GV 222
              I          N +   +S+N +Q            +  + +++N  T         
Sbjct: 660 GRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719

Query: 223 IPSSVCQLPNLQNFTYSFNYFTGEPPS 249
              +      L      FN  T     
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLTSLSDD 746

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  123 bits (309), Expect = 2e-29
 Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 38/265 (14%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGR-LTDLAIFHINSNRFCGVVPSTF--RRLKLLY 67
            +  L     + L++  I   +P +       +     + N+    +P+ F  + + ++ 
Sbjct: 593 TNVKLTD---LKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMG 647

Query: 68  EVDLSNNRFVGKFPKLFLSLP-----KLKYLDLRFNEFEGSVPSKLFDK--DLDAIFLND 120
            VD S N+   +   +  S+          + L +NE +   P++LF     +  I L++
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTELFATGSPISTIILSN 706

Query: 121 NRFQFGIPENLGNSPVS---------VLVFANNDLGGCIPGSIGKMG-KTLNEIILMNDN 170
           N     IPEN                 +    N L   +           L+ + +  + 
Sbjct: 707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNC 764

Query: 171 LTGCLPPQIGMLKNLTVFDVSF------NHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIP 224
            +   P Q      L  F +        N +    P+ I    SL QL +  N     + 
Sbjct: 765 FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VD 822

Query: 225 SSVCQLPNLQNFTYSFNYFTGEPPS 249
             +   P L     + N       +
Sbjct: 823 EKL--TPQLYILDIADNPNISIDVT 845

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  122 bits (307), Expect = 4e-29
 Identities = 28/256 (10%), Positives = 70/256 (27%), Gaps = 34/256 (13%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPP--EIGRLTDLAIFHINSNRFCGVVPSTFRRLKL--- 65
            +  +     +  +H  +   +P       +  +     + N+      +    +     
Sbjct: 617 FTDQVEG---LGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 66  --LYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIF------ 117
                V LS N       +LF +   +  + L  N    S+P                  
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLT 731

Query: 118 ---LNDNRFQFGIPENLGNSPVS---VLVFANNDLGGCIPGSIGKMGK--TLN---EIIL 166
              L  N+    + ++   + +     +  + N      P       +        +   
Sbjct: 732 TIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789

Query: 167 MNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSS 226
             + +    P  I    +L    +  N ++  +   +     L  L++A N    +  +S
Sbjct: 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISIDVTS 846

Query: 227 VCQLPNLQNFTYSFNY 242
           VC       +   ++ 
Sbjct: 847 VCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (301), Expect = 2e-28
 Identities = 27/227 (11%), Positives = 62/227 (27%), Gaps = 29/227 (12%)

Query: 50  NRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN--------EFE 101
           + +             +  + L+     G+ P     L +LK L    +          +
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 102 GSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTL 161
             +   + ++    I ++  +      + L  S +       N     I           
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS-LKD 427

Query: 162 NEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG-------------------SLPSS 202
            +I  + + +T  +   I  L  L +   + +                       +   S
Sbjct: 428 TQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELS 486

Query: 203 IGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
             N+K L  + + +      +P  +  LP LQ+   + N        
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  116 bits (292), Expect = 3e-27
 Identities = 30/243 (12%), Positives = 72/243 (29%), Gaps = 22/243 (9%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
            I +++  +       +     L      +     +   +   LK     +L+N   +  
Sbjct: 382 RIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR--ITF 439

Query: 80  FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSP-VSV 138
             K    L KL+ +    + F       +  +D +    +  +       +  N   ++ 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTY-DNIAVDWEDAN---SDYAKQYENEELSWSNLKDLTD 495

Query: 139 LVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG---------CLPPQIGMLKNLTVFD 189
           +   N      +P  +  +   L  + +  +              L         + +F 
Sbjct: 496 VELYNCPNMTQLPDFLYDL-PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 190 VSFNHLQGSLPSS--IGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP 247
           + +N+L+   P+S  +  M  L  L+  HN+       +      L +    +N     P
Sbjct: 555 MGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIP 611

Query: 248 PSC 250
              
Sbjct: 612 EDF 614

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 9/83 (10%), Positives = 22/83 (26%)

Query: 169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVC 228
           D         +     +T   ++    +G +P +IG +  L+ L+   +  T        
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 229 QLPNLQNFTYSFNYFTGEPPSCT 251
           +           +          
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMF 391

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 21/157 (13%), Positives = 40/157 (25%), Gaps = 3/157 (1%)

Query: 93  LDLRFNEFEGSVPSKLFDKDLDAIFLNDN-RFQFGIPENLGNSPVSVLVFANNDLGGCIP 151
           + ++  E    +      K +       N R+  G   N  +S         +  G    
Sbjct: 257 VPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPG 316

Query: 152 GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQ 211
             +   G+ +  + L      G +P  IG L  L V     +    S         + + 
Sbjct: 317 VDLDNNGR-VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDM 375

Query: 212 LNVAHNRFTGVIPS-SVCQLPNLQNFTYSFNYFTGEP 247
                +R         +     L       +     P
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 10/64 (15%), Positives = 23/64 (35%)

Query: 188 FDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP 247
           F+   +         + N   +  L++A     G +P ++ QL  L+  ++  +  T   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 248 PSCT 251
               
Sbjct: 364 RLFG 367

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  122 bits (309), Expect = 4e-31
 Identities = 47/243 (19%), Positives = 84/243 (34%), Gaps = 22/243 (9%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
             P       ++L    +    P +  RL+ L    I++      +P T ++   L  + 
Sbjct: 79  TQPGRVA---LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAGLETLT 133

Query: 71  LSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIF----------LND 120
           L+ N      P    SL +L+ L +R       +P  L   D               L  
Sbjct: 134 LARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 121 NRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI 179
              +  +P ++ N   +  L   N+ L   +  +I  +   L E+ L         PP  
Sbjct: 193 TGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHHL-PKLEELDLRGCTALRNYPPIF 249

Query: 180 GMLKNLTVFDVS-FNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTY 238
           G    L    +   ++L  +LP  I  +  LE+L++        +PS + QLP       
Sbjct: 250 GGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308

Query: 239 SFN 241
             +
Sbjct: 309 PPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 94.2 bits (235), Expect = 3e-21
 Identities = 28/230 (12%), Positives = 58/230 (25%), Gaps = 45/230 (19%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLF--LSLPK 89
               + +         N                       +          L    + P 
Sbjct: 28  YHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRALK-ATADLLEDATQPG 82

Query: 90  LKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGG 148
              L+LR        P + F    L  + ++                             
Sbjct: 83  RVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM------------------------ 117

Query: 149 CIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGN--- 205
            +P ++ +    L  + L  + L   LP  I  L  L    +        LP  + +   
Sbjct: 118 ELPDTMQQF-AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDA 175

Query: 206 ------MKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
                 + +L+ L +        +P+S+  L NL++     +  +   P+
Sbjct: 176 SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPA 224

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 23/157 (14%), Positives = 44/157 (28%), Gaps = 9/157 (5%)

Query: 87  LPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANND 145
               + L  + +         L        +  D   ++       N +   +       
Sbjct: 11  SSGRENLYFQGSTALRPYHDVL--SQWQRHYNADRN-RWHSAWRQANSNNPQIETRTGRA 67

Query: 146 LGGCIPGSIGKM-GKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIG 204
           L       +          + L +  L    P Q   L +L    +    L   LP ++ 
Sbjct: 68  LK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124

Query: 205 NMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
               LE L +A N     +P+S+  L  L+  +    
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 36/197 (18%), Positives = 59/197 (29%), Gaps = 39/197 (19%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEV---------DLSNNRFVGKFPK 82
           LP  I  L  L    I +      +P          E           L         P 
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPA 200

Query: 83  LFLSLPKLKYLDLRFNEFEGSVPSKLFD----KDLDAIFLNDNRFQFGIPENLGN-SPVS 137
              +L  LK L +R +    ++   +      ++LD         +   P   G  +P+ 
Sbjct: 201 SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELD--LRGCTALR-NYPPIFGGRAPLK 256

Query: 138 VLVFANNDLGGC-----IPGSIGKMGKTLNEIIL-MNDNLTGCLPPQIGMLKNLTVFDVS 191
            L      L  C     +P  I ++   L ++ L    NL+  LP  I  L    +  V 
Sbjct: 257 RL-----ILKDCSNLLTLPLDIHRL-TQLEKLDLRGCVNLS-RLPSLIAQLPANCIILVP 309

Query: 192 FN-------HLQGSLPS 201
            +       H   + P+
Sbjct: 310 PHLQAQLDQHRPVARPA 326

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  124 bits (313), Expect = 4e-30
 Identities = 42/252 (16%), Positives = 79/252 (31%), Gaps = 11/252 (4%)

Query: 7   RSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLL 66
            + F       V SI+L                + L    + +      +PS    L  L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTL 303

Query: 67  YEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQ 124
            ++ LS N+F         + P L +L ++ N     + +   +  ++L  + L+ +  +
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 125 F--GIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPP-QIG 180
                   L N   +  L  + N+       +  +  + L  + L    L          
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ-LELLDLAFTRLKVKDAQSPFQ 422

Query: 181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTY-- 238
            L  L V ++S + L  S       + +L+ LN+  N F          L  L       
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

Query: 239 -SFNYFTGEPPS 249
            SF   +     
Sbjct: 483 LSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (304), Expect = 5e-29
 Identities = 45/244 (18%), Positives = 83/244 (34%), Gaps = 14/244 (5%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPE-IGRLTDLAIFHINSNR--FCGVVPSTFRRLKLLY 67
           N PSL     + +        L    +  L +L    ++ +            R L  L 
Sbjct: 323 NFPSLTH---LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 68  EVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQF 125
            ++LS N  +    + F   P+L+ LDL F   +       F     L  + L+ +    
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 126 GIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMG--KTLNEIILMNDNLTGCLPPQI-GM 181
              +     P +  L    N            +     L  ++L   +L+  +       
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQHAFTS 498

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           LK +   D+S N L  S   ++ ++K +  LN+A N  + ++PS +  L   +      N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 242 YFTG 245
               
Sbjct: 558 PLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  120 bits (302), Expect = 8e-29
 Identities = 41/249 (16%), Positives = 83/249 (33%), Gaps = 14/249 (5%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPE-IGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
              +L+    +      I+  +    +     L   ++ SN    +        + L  +
Sbjct: 103 GPKALKH---LFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158

Query: 70  DLSNNRFVGKFPKLFLSLPKLK--YLDLRFNEFEGSVPSKLFDKD-LDAIFLNDNRFQFG 126
           D  NN       +   SL +     L+L  N+    +    FD     ++     +    
Sbjct: 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLV 217

Query: 127 IPENLGNSPVS---VLVFANNDLGGCIPGSIGKMGK-TLNEIILMNDNLTGCLPPQIGML 182
           I + L NS +    +  F + D     P     + + ++  I L                
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277

Query: 183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY 242
             L   D++  HL   LPS +  + +L++L ++ N+F  +   S    P+L + +   N 
Sbjct: 278 SGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336

Query: 243 FTGEPPSCT 251
              E  +  
Sbjct: 337 KRLELGTGC 345

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  113 bits (285), Expect = 1e-26
 Identities = 33/246 (13%), Positives = 73/246 (29%), Gaps = 11/246 (4%)

Query: 12  SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL 71
             S      ++ +   +         RL +L    +   +   +   TF+    L  + L
Sbjct: 32  PNSTE---CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 72  SNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPE 129
           + N  +            LK+L         S+        K L++++L  N        
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLP 147

Query: 130 NLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVF 188
               +  + VL F NN +       +  + +  N  + +N N    + P           
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSL 207

Query: 189 DVSFNHLQGSLPSSIGN--MKSLEQLNVAHNRFTGVIPSSVCQLP--NLQNFTYSFNYFT 244
           +         +   + N  ++SL            + P+    L   ++++     +YF 
Sbjct: 208 NFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF 267

Query: 245 GEPPSC 250
               + 
Sbjct: 268 NISSNT 273

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 97.4 bits (243), Expect = 2e-21
 Identities = 46/236 (19%), Positives = 91/236 (38%), Gaps = 22/236 (9%)

Query: 11  NSPSLRVVASIDL--NHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYE 68
           N  +LR    +DL  +  + +     ++  L+ L   +++ N    +    F+    L  
Sbjct: 348 NLENLRE---LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404

Query: 69  VDLSNNRFVGKFPK-LFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQF 125
           +DL+  R   K  +  F +L  LK L+L  +  +     +LFD    L  + L  N F  
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD-ISSEQLFDGLPALQHLNLQGNHFPK 463

Query: 126 GIPENLGN----SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-G 180
           G  +   +      + +LV +  DL      +   +   +N + L ++ LT     +   
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM-MNHVDLSHNRLTS-SSIEALS 521

Query: 181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNF 236
            LK + + +++ NH+   LPS +  +     +N+  N          C       +
Sbjct: 522 HLKGIYL-NLASNHISIILPSLLPILSQQRTINLRQNPLDC-----TCSNIYFLEW 571

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.1 bits (206), Expect = 7e-17
 Identities = 18/161 (11%), Positives = 41/161 (25%), Gaps = 6/161 (3%)

Query: 91  KYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSP-VSVLVFANNDLGGC 149
           K  +         +P  L     + +  + N               ++ L      +   
Sbjct: 15  KTYNCENLGLN-EIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 150 IPGSIGKMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTVFDVSFNHLQGSLPSSIGNMKS 208
              +     + L+ ++L  + L   +        K L         +       + N K+
Sbjct: 73  HEDTFQSQHR-LDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 209 LEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           LE L +  N  + +          L+   +  N        
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 6e-12
 Identities = 13/101 (12%), Positives = 33/101 (32%), Gaps = 3/101 (2%)

Query: 150 IPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSL 209
           IPG++     +   +    + L          L NLT  D++   +      +  +   L
Sbjct: 27  IPGTLPN---STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83

Query: 210 EQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSC 250
           + L +  N    +  +++     L++  +     +      
Sbjct: 84  DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIP 124

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 41/196 (20%), Positives = 68/196 (34%), Gaps = 16/196 (8%)

Query: 6   ARSPF-NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVV---PSTFR 61
           A+SPF N   L+V   ++L+H+ +          L  L   ++  N F        ++ +
Sbjct: 417 AQSPFQNLHLLKV---LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
            L  L  + LS           F SL  + ++DL  N    S    L       + L  N
Sbjct: 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN 533

Query: 122 RFQFGIPENLGNSP-VSVLVFANNDL-GGCIPGSIGKMGKTLNE--IILMNDNLTGCLPP 177
                +P  L        +    N L   C   S     +   E    L +   T C  P
Sbjct: 534 HISIILPSLLPILSQQRTINLRQNPLDCTC---SNIYFLEWYKENMQKLEDTEDTLCENP 590

Query: 178 QIGMLKNLTVFDVSFN 193
              +L+ + + DV+ +
Sbjct: 591 --PLLRGVRLSDVTLS 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  121 bits (305), Expect = 4e-29
 Identities = 40/243 (16%), Positives = 79/243 (32%), Gaps = 14/243 (5%)

Query: 9   PFNS-PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKL-- 65
           P    P L+    + L     +  +  +   L  L+   ++ N        ++  L    
Sbjct: 323 PTLDLPFLKS---LTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377

Query: 66  LYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRF 123
           L  +DLS N  +      F+ L +L++LD + +  +       F   + L  + ++    
Sbjct: 378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 124 QFGIPENLGNSPV-SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-GM 181
           +             + L  A N        ++      L  + L    L   +   +   
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDT 495

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           L  L + ++S N+L     S    + SL  L+ + NR             +L  F  + N
Sbjct: 496 LHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555

Query: 242 YFT 244
              
Sbjct: 556 SVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  113 bits (286), Expect = 9e-27
 Identities = 43/244 (17%), Positives = 76/244 (31%), Gaps = 16/244 (6%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
              ++     + L    I      ++ +        I   +           LK L    
Sbjct: 283 CLANVSA---MSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---T 334

Query: 71  LSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVP---SKLFDKDLDAIFLNDNRFQFGI 127
           L+ N+  G      ++LP L YLDL  N    S     S L    L  + L+ N     +
Sbjct: 335 LTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IM 391

Query: 128 PENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLT 186
             N      +  L F ++ L      S     + L  + +   N           L +L 
Sbjct: 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451

Query: 187 VFDVSFNHLQGSLPSSI-GNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTG 245
              ++ N  + +  S++  N  +L  L+++  +   +       L  LQ    S N    
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511

Query: 246 EPPS 249
              S
Sbjct: 512 LDSS 515

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  113 bits (284), Expect = 1e-26
 Identities = 33/274 (12%), Positives = 72/274 (26%), Gaps = 34/274 (12%)

Query: 8   SPFNSPSLRVVASIDLNHADIAGYLPPEIGR-LTDLAIFHINSNRFCGVV------PSTF 60
             F    L     + L     +  +     + L  L +  +    F          PS  
Sbjct: 199 QAFQGIKLHE---LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIM 255

Query: 61  RRLKLLY--EVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFL 118
             L  +   E  L+           F  L  +  + L     +  +          ++ +
Sbjct: 256 EGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSI 314

Query: 119 NDNRFQ--------------------FGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMG 158
              + +                        + +    +S L  + N L      S   +G
Sbjct: 315 IRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 159 KTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLP-SSIGNMKSLEQLNVAHN 217
                 + ++ N    +      L+ L   D   + L+     S+  +++ L  L++++ 
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434

Query: 218 RFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCT 251
                       L +L     + N F     S  
Sbjct: 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.9 bits (239), Expect = 6e-21
 Identities = 40/253 (15%), Positives = 75/253 (29%), Gaps = 23/253 (9%)

Query: 13  PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLS 72
             L+    +DL+  +I          L  L+   +  N      P +F  L  L  +   
Sbjct: 56  SELQW---LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112

Query: 73  NNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPE- 129
             +           L  LK L++  N          F    +L  + L+ N  Q  I   
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVN 171

Query: 130 ---NLGNSPVS--VLVFANNDLGGCIPGSIGKMGKTLNEIIL-MNDNLTGCLPPQIGMLK 183
               L  +P     L  + N +   I     + G  L+E+ L  N N +  +   +  L 
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLA 229

Query: 184 NLTVFDVSFNHLQGSL------PSSIGNMKSL--EQLNVAHNRFTGVIPSSVCQLPNLQN 235
            L V  +     +         PS +  +  +  ++  + +             L N+  
Sbjct: 230 GLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289

Query: 236 FTYSFNYFTGEPP 248
            + +         
Sbjct: 290 MSLAGVSIKYLED 302

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 95.5 bits (238), Expect = 8e-21
 Identities = 33/253 (13%), Positives = 75/253 (29%), Gaps = 19/253 (7%)

Query: 12  SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL 71
             S +    IDL+   +           ++L    ++      +    +  L  L  + L
Sbjct: 31  PSSTKN---IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 72  SNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQ-FGIP 128
           + N      P  F  L  L+ L     +   S+ S        L  + +  N      +P
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLP 146

Query: 129 ENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKT--LNEIILMNDNLTGCLPPQIGMLKNL 185
               N   +  +  + N +       +  + +   +N  + M+ N    +  Q      L
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL 206

Query: 186 TVFDVSFNHLQGSLPS-SIGNMKSLEQLNVAHNRFTG-----VIPSSVCQ-LPNLQ--NF 236
               +  N    ++    + N+  L    +    F       +   S+ + L ++    F
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 237 TYSFNYFTGEPPS 249
             ++     +   
Sbjct: 267 RLTYTNDFSDDIV 279

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 5/135 (3%)

Query: 116 IFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL 175
               D +    +P+++ +S    +  + N L      S     + L  + L    +   +
Sbjct: 16  YQCMDQKLS-KVPDDIPSS-TKNIDLSFNPLKILKSYSFSNFSE-LQWLDLSRCEIET-I 71

Query: 176 PPQ-IGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQ 234
             +    L +L+   ++ N +Q   P S   + SLE L     +   +    + QL  L+
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131

Query: 235 NFTYSFNYFTGEPPS 249
               + N+       
Sbjct: 132 KLNVAHNFIHSCKLP 146

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 18/124 (14%), Positives = 32/124 (25%), Gaps = 4/124 (3%)

Query: 127 IPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLT 186
           +   +   P       +  L   +P  I     +   I L  + L             L 
Sbjct: 4   LNPCIEVVPNITYQCMDQKLSK-VPDDIPS---STKNIDLSFNPLKILKSYSFSNFSELQ 59

Query: 187 VFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246
             D+S   ++     +   +  L  L +  N      P S   L +L+N           
Sbjct: 60  WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASL 119

Query: 247 PPSC 250
               
Sbjct: 120 ESFP 123

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 20/97 (20%)

Query: 173 GCLPPQIGMLKNLTVF--------------------DVSFNHLQGSLPSSIGNMKSLEQL 212
           G L P I ++ N+T                      D+SFN L+     S  N   L+ L
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWL 61

Query: 213 NVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           +++      +   +   L +L N   + N      P 
Sbjct: 62  DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  115 bits (290), Expect = 2e-28
 Identities = 45/245 (18%), Positives = 88/245 (35%), Gaps = 24/245 (9%)

Query: 8   SPF-NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLL 66
           S   N  +LR    + LN  +I+      +  LT +   ++ +N       S    +  L
Sbjct: 104 SALQNLTNLR---ELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGL 157

Query: 67  YEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVP-SKLFDKDLDAIFLNDNRFQF 125
             + ++ ++     P    +L  L  L L +N+ E   P + L    L       N+   
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASL--TSLHYFTAYVNQIT- 212

Query: 126 GIP--ENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLK 183
            I    N+    ++ L   NN +   +   +  +   L  + +  + ++      +  L 
Sbjct: 213 DITPVANMTR--LNSLKIGNNKITD-LSP-LANL-SQLTWLEIGTNQISD--INAVKDLT 265

Query: 184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243
            L + +V  N +     S + N+  L  L + +N+        +  L NL     S N+ 
Sbjct: 266 KLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

Query: 244 TGEPP 248
           T   P
Sbjct: 324 TDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  110 bits (277), Expect = 1e-26
 Identities = 48/245 (19%), Positives = 99/245 (40%), Gaps = 24/245 (9%)

Query: 8   SPFNS-PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLL 66
           SP ++   L    ++ +    I       +  LT+L   ++N +    +  S    L  +
Sbjct: 82  SPLSNLVKLT---NLYIGTNKITD--ISALQNLTNLRELYLNEDNISDI--SPLANLTKM 134

Query: 67  YEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVP-SKLFDKDLDAIFLNDNRFQF 125
           Y ++L  N  +        ++  L YL +  ++ +   P + L   DL ++ LN N+ + 
Sbjct: 135 YSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTPIANL--TDLYSLSLNYNQIED 191

Query: 126 GIP-ENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKN 184
             P  +L +  +       N +    P  +  M   LN + + N+ +T  L P +  L  
Sbjct: 192 ISPLASLTS--LHYFTAYVNQITDITP--VANM-TRLNSLKIGNNKITD-LSP-LANLSQ 244

Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
           LT  ++  N +     +++ ++  L+ LNV  N+ + +  S +  L  L +   + N   
Sbjct: 245 LTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLG 300

Query: 245 GEPPS 249
            E   
Sbjct: 301 NEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  100 bits (252), Expect = 3e-23
 Identities = 40/229 (17%), Positives = 80/229 (34%), Gaps = 38/229 (16%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
           ++    A I    P     L +     +           T   L+ + ++ ++  + V  
Sbjct: 4   TLATLPAPINQIFP--DADLAEGIRAVLQKASV--TDVVTQEELESITKLVVAGEK-VAS 58

Query: 80  FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVL 139
              +   L  L+YL+L  N+            D+  +             NL    ++ L
Sbjct: 59  IQGIE-YLTNLEYLNLNGNQI----------TDISPL------------SNLVK--LTNL 93

Query: 140 VFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSL 199
               N +      ++  +   L E+ L  DN++  + P +  L  +   ++  NH   S 
Sbjct: 94  YIGTNKI--TDISALQNL-TNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNL-SD 147

Query: 200 PSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248
            S + NM  L  L V  ++   V P  +  L +L + + ++N      P
Sbjct: 148 LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP 194

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 90.3 bits (225), Expect = 7e-20
 Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 17/190 (8%)

Query: 34  PEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93
             I  LTDL    +N N+   +  S    L  L+      N+     P    ++ +L  L
Sbjct: 171 TPIANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSL 226

Query: 94  DLRFNEFEGSVP-SKLFDKDLDAIFLNDNRFQFGIP--ENLGNSPVSVLVFANNDLGGCI 150
            +  N+     P + L    L  + +  N+    I   ++L    + +L   +N +   I
Sbjct: 227 KIGNNKITDLSPLANL--SQLTWLEIGTNQIS-DINAVKDLTK--LKMLNVGSNQISD-I 280

Query: 151 PGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLE 210
              +  +   LN + L N+ L       IG L NLT   +S NH+       + ++  ++
Sbjct: 281 S-VLNNL-SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI--RPLASLSKMD 336

Query: 211 QLNVAHNRFT 220
             + A+    
Sbjct: 337 SADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.4 bits (189), Expect = 3e-15
 Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 35/180 (19%)

Query: 70  DLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPE 129
                     FP     L +     L+       V                        E
Sbjct: 6   ATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT----------------------QE 41

Query: 130 NLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD 189
            L +  ++ LV A   +   I G I  +   L  + L  + +T  + P +  L  LT   
Sbjct: 42  ELES--ITKLVVAGEKVAS-IQG-IEYL-TNLEYLNLNGNQITD-ISP-LSNLVKLTNLY 94

Query: 190 VSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           +  N +  +  S++ N+ +L +L +  +  + + P  +  L  + +     N+   +   
Sbjct: 95  IGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP 150

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  113 bits (285), Expect = 6e-28
 Identities = 34/261 (13%), Positives = 81/261 (31%), Gaps = 37/261 (14%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGR-LTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
           N    ++     +  + +       + +   ++    ++ N    +  +       L  +
Sbjct: 8   NGNRYKI---EKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 70  DLSNNRF-----VGKFPKL---FLS---------LPKLKYLDLRFNEFEGSVPSKLFDKD 112
           +LS+N       +     L    L+          P ++ L    N     V      + 
Sbjct: 64  NLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSRG-QG 121

Query: 113 LDAIFLNDNRFQFGIPE----NLGNSPVSVLVFANNDLGG-CIPGSIGKMGKTLNEIILM 167
              I+L +N+    + +          V  L    N++              TL  + L 
Sbjct: 122 KKNIYLANNKIT-MLRDLDEGCRSR--VQYLDLKLNEIDTVNFAELAASS-DTLEHLNLQ 177

Query: 168 NDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSV 227
            + +   +  Q+     L   D+S N L   +     +   +  +++ +N+   +I  ++
Sbjct: 178 YNFIYD-VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKAL 233

Query: 228 CQLPNLQNFTYSFNYFTGEPP 248
               NL++F    N F     
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTL 254

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  100 bits (251), Expect = 2e-23
 Identities = 41/216 (18%), Positives = 71/216 (32%), Gaps = 20/216 (9%)

Query: 39  LTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN 98
                I  +  +     + S  +    + E+DLS N              KL+ L+L  N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 99  EFEGSVPSKLFD--KDLDAIFLNDNRFQ-FGIPENLGNSPVSVLVFANNDLGGCIPGSIG 155
                      +    L  + LN+N  Q   +  ++       L  ANN++   +  S  
Sbjct: 69  VLY-ETLD--LESLSTLRTLDLNNNYVQELLVGPSI-----ETLHAANNNISR-VSCSR- 118

Query: 156 KMGKTLNEIILMNDNLTGCLPPQ-IGMLKNLTVFDVSFNHLQG-SLPSSIGNMKSLEQLN 213
             G+    I L N+ +T  L     G    +   D+  N +   +      +  +LE LN
Sbjct: 119 --GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 214 VAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           + +N     +   V     L+    S N      P 
Sbjct: 176 LQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPE 209

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.8 bits (239), Expect = 6e-22
 Identities = 38/235 (16%), Positives = 75/235 (31%), Gaps = 38/235 (16%)

Query: 13  PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLS 72
            +LR    +DLN+  +      E+     +   H  +N    V  S  +  K +    L+
Sbjct: 80  STLRT---LDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQGKKNI---YLA 128

Query: 73  NNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLG 132
           NN+             +++YLDL+ NE + +V                        + L 
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASS---------------DTL- 171

Query: 133 NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSF 192
                 L    N +   + G +      L  + L ++ L   + P+      +T   +  
Sbjct: 172 ----EHLNLQYNFIYD-VKGQVVF--AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRN 223

Query: 193 NHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP 247
           N L   +  ++   ++LE  ++  N F            N +  T +        
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVKKLT 276

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.9 bits (208), Expect = 8e-18
 Identities = 24/196 (12%), Positives = 58/196 (29%), Gaps = 14/196 (7%)

Query: 57  PSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLD 114
               +         ++++        L  S   +K LDL  N     + +        L+
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLE 61

Query: 115 AIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC 174
            + L+ N       +    S +  L   NN +       +   G ++  +   N+N++  
Sbjct: 62  LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLV-GPSIETLHAANNNISR- 113

Query: 175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNL 233
           +       +      ++ N +        G    ++ L++  N    V           L
Sbjct: 114 VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 234 QNFTYSFNYFTGEPPS 249
           ++    +N+       
Sbjct: 172 EHLNLQYNFIYDVKGQ 187

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 7/134 (5%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
           +S +L     ++L +  I   +  ++     L    ++SN+    +   F+    +  + 
Sbjct: 167 SSDTLE---HLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWIS 220

Query: 71  LSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPEN 130
           L NN+ V    K       L++ DLR N F        F K+     +     +    +N
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 131 LGNSPVSVLVFANN 144
                V  L     
Sbjct: 280 EEECTVPTLGHYGA 293

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 6/52 (11%), Positives = 15/52 (28%)

Query: 198 SLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           ++     N    +   V  +     + S      N++    S N  +    +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA 52

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (291), Expect = 8e-28
 Identities = 28/240 (11%), Positives = 73/240 (30%), Gaps = 22/240 (9%)

Query: 9   PFNSPSLRVVASIDLNHADIAGYLPPEIGR-LTDLAIFHINSNRFCGVVPSTFRRLKLLY 67
             N    ++     +  + +       + +   ++    ++ N    +  +       L 
Sbjct: 6   KQNGNRYKI---EKVTDSSLKQ-ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 68  EVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEG-SVPSKLFDKDLDAIFLNDNRFQFG 126
            ++LS+N           SL  L+ LDL  N  +   V   +  + L      +N     
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSI--ETLH---AANNNISR- 113

Query: 127 IPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQ--IGMLKN 184
           +  + G      +  ANN +        G   + +  + L  + +   +           
Sbjct: 114 VSCSRGQG-KKNIYLANNKITMLRDLDEGCRSR-VQYLDLKLNEIDT-VNFAELAASSDT 170

Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
           L   ++ +N +   +   +     L+ L+++ N+    +         +   +   N   
Sbjct: 171 LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (265), Expect = 2e-24
 Identities = 43/222 (19%), Positives = 74/222 (33%), Gaps = 21/222 (9%)

Query: 34  PEIGR-LTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92
            EI +      I  +  +     + S  +    + E+DLS N              KL+ 
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 93  LDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQ-FGIPENLGNSPVSVLVFANNDLGGC 149
           L+L  N           +    L  + LN+N  Q   +  ++       L  ANN++   
Sbjct: 63  LNLSSNVLY-ETLD--LESLSTLRTLDLNNNYVQELLVGPSI-----ETLHAANNNISR- 113

Query: 150 IPGSIGKMGKTLNEIILMNDNLTGCLPPQ-IGMLKNLTVFDVSFNHLQG-SLPSSIGNMK 207
           +  S    G+    I L N+ +T  L     G    +   D+  N +   +      +  
Sbjct: 114 VSCSR---GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 208 SLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           +LE LN+ +N     +   V     L+    S N      P 
Sbjct: 170 TLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPE 209

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 94.5 bits (235), Expect = 1e-20
 Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 11/229 (4%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
           +S +L     ++L +  I   +  ++     L    ++SN+    +   F+    +  + 
Sbjct: 167 SSDTLE---HLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKL-AFMGPEFQSAAGVTWIS 220

Query: 71  LSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPEN 130
           L NN+ V    K       L++ DLR N F        F K+     +     +    +N
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 131 LGNSPVSVLV----FANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLT 186
                V  L     +   DL       +  + +  + ++    + T  L  +        
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339

Query: 187 VFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQN 235
             D      +  +       ++   L          + +       L  
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDG 388

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.4 bits (219), Expect = 9e-19
 Identities = 35/243 (14%), Positives = 67/243 (27%), Gaps = 16/243 (6%)

Query: 13  PSLRVVASIDLNHADIAGYLPPE--IGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
             ++    +DL   +I   +           L   ++  N    V          L  +D
Sbjct: 144 SRVQY---LDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLD 197

Query: 71  LSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPE 129
           LS+N+        F S   + ++ LR N+    +   L   ++L+   L  N F  G   
Sbjct: 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 130 NLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD 189
           +  +    V   A   +   + G   +                    P    L  L   +
Sbjct: 256 DFFSKNQRVQTVAKQTVKK-LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKE 314

Query: 190 VSFNHLQGS----LPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTG 245
            +    QGS    L     N     +++    ++  VI     +                
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDE 374

Query: 246 EPP 248
           +  
Sbjct: 375 QVS 377

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 87.6 bits (217), Expect = 2e-18
 Identities = 26/192 (13%), Positives = 60/192 (31%), Gaps = 17/192 (8%)

Query: 62  RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLN 119
           R K+     ++++        L  S   +K LDL  N     + +        L+ + L+
Sbjct: 11  RYKIE---KVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLS 66

Query: 120 DNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI 179
            N       +    S +  L   NN +       +   G ++  +   N+N++  +    
Sbjct: 67  SNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLV-GPSIETLHAANNNISR-VSC-- 116

Query: 180 GMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTY 238
              +      ++ N +        G    ++ L++  N    V           L++   
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 239 SFNYFTGEPPSC 250
            +N+        
Sbjct: 177 QYNFIYDVKGQV 188

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 6/52 (11%), Positives = 15/52 (28%)

Query: 198 SLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           ++     N    +   V  +     + S      N++    S N  +    +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAA 52

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  111 bits (281), Expect = 1e-26
 Identities = 49/232 (21%), Positives = 89/232 (38%), Gaps = 21/232 (9%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
            +D++   ++      + +LT+L      +N+   + P     L  L E+ L+ N+    
Sbjct: 181 RLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD- 235

Query: 80  FPKLFLSLPKLKYLDLRFNEFEGSVP-SKLFDKDLDAIFLNDNRFQFGIPENLGNSP-VS 137
                 SL  L  LDL  N+     P S L    L  + L  N+    I   L     ++
Sbjct: 236 -IGTLASLTNLTDLDLANNQISNLAPLSGL--TKLTELKLGANQIS-NIS-PLAGLTALT 290

Query: 138 VLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG 197
            L    N L    P  I  + K L  + L  +N++  + P +  L  L       N +  
Sbjct: 291 NLELNENQLEDISP--ISNL-KNLTYLTLYFNNISD-ISP-VSSLTKLQRLFFYNNKVSD 345

Query: 198 SLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
              SS+ N+ ++  L+  HN+ + + P  +  L  +     +   +T  P +
Sbjct: 346 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (267), Expect = 1e-24
 Identities = 40/232 (17%), Positives = 90/232 (38%), Gaps = 24/232 (10%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
           ++  +   I       +  L +L   + ++N+   + P   + L  L ++ ++NN+    
Sbjct: 50  TLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI 105

Query: 80  FPKLFLSLPKLKYLDLRFNEFEGSVP-SKLFDKDLDAIFLNDNRFQFGIP--ENLGNSPV 136
            P    +L  L  L L  N+     P   L   +L+ + L+ N     I     L +  +
Sbjct: 106 TP--LANLTNLTGLTLFNNQITDIDPLKNL--TNLNRLELSSNTIS-DISALSGLTS--L 158

Query: 137 SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQ 196
             L F N          +  +  TL  + + ++ ++      +  L NL     + N + 
Sbjct: 159 QQLSFGNQVTD---LKPLANL-TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS 212

Query: 197 GSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248
               + +G + +L++L++  N+   +   ++  L NL +   + N  +   P
Sbjct: 213 DI--TPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  100 bits (251), Expect = 1e-22
 Identities = 53/232 (22%), Positives = 94/232 (40%), Gaps = 24/232 (10%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
            ++L+   I+      +  LT L       N+   + P     L  L  +D+S+N+    
Sbjct: 138 RLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSD- 191

Query: 80  FPKLFLSLPKLKYLDLRFNEFEGSVP-SKLFDKDLDAIFLNDNRFQFGIP--ENLGNSPV 136
              +   L  L+ L    N+     P   L   +LD + LN N+ +  I    +L N  +
Sbjct: 192 -ISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLK-DIGTLASLTN--L 245

Query: 137 SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQ 196
           + L  ANN +    P  +  +   L E+ L  + ++  + P +  L  LT  +++ N L+
Sbjct: 246 TDLDLANNQISNLAP--LSGL-TKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLE 300

Query: 197 GSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248
               S I N+K+L  L +  N  + + P  V  L  LQ   +  N  +    
Sbjct: 301 D--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 89.3 bits (222), Expect = 5e-19
 Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 23/243 (9%)

Query: 8   SPF-NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLL 66
           +P     +L     + LN   +       +  LT+L    + +N+   + P     L  L
Sbjct: 215 TPLGILTNLD---ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267

Query: 67  YEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVP-SKLFDKDLDAIFLNDNRFQF 125
            E+ L  N+     P     L  L  L+L  N+ E   P S L  K+L  + L  N    
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNL--KNLTYLTLYFNNISD 323

Query: 126 GIP-ENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKN 184
             P  +L    +  L F NN +   +  S+  +   +N +   ++ ++  L P +  L  
Sbjct: 324 ISPVSSLTK--LQRLFFYNNKVSD-VS-SLANL-TNINWLSAGHNQISD-LTP-LANLTR 376

Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
           +T   ++      + P +     S+            + P+++    +      ++N  +
Sbjct: 377 ITQLGLNDQAWT-NAPVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPS 434

Query: 245 GEP 247
              
Sbjct: 435 YTN 437

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.5 bits (207), Expect = 3e-17
 Identities = 34/193 (17%), Positives = 60/193 (31%), Gaps = 14/193 (7%)

Query: 34  PEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93
             +  LT L    +N N+   + P     LK L  + L  N      P    SL KL+ L
Sbjct: 281 SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336

Query: 94  DLRFNEFEGSVP-SKLFDKDLDAIFLNDNRFQFGIP-ENLGNSPVSVLVFANNDLGGCIP 151
               N+       + L   +++ +    N+     P  NL    ++ L   +       P
Sbjct: 337 FFYNNKVSDVSSLANL--TNINWLSAGHNQISDLTPLANLTR--ITQLGLNDQAWTN-AP 391

Query: 152 GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQ 211
            +        N +  +   L    P  I    + T  D+++N                  
Sbjct: 392 VNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVT 448

Query: 212 LNVAHNRFTGVIP 224
           +      F+G + 
Sbjct: 449 IGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 72.3 bits (178), Expect = 1e-13
 Identities = 26/178 (14%), Positives = 54/178 (30%), Gaps = 35/178 (19%)

Query: 71  LSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPEN 130
             +      F     +L +     L       +V     D+ +  +  +    +    + 
Sbjct: 9   TQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQTDLDQ-VTTLQADRLGIK--SIDG 63

Query: 131 LGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDV 190
           +              L              L +I   N+ LT  + P +  L  L    +
Sbjct: 64  VEY------------L------------NNLTQINFSNNQLTD-ITP-LKNLTKLVDILM 97

Query: 191 SFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248
           + N +     + + N+ +L  L + +N+ T + P  +  L NL     S N  +    
Sbjct: 98  NNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA 151

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  107 bits (268), Expect = 3e-25
 Identities = 56/251 (22%), Positives = 89/251 (35%), Gaps = 30/251 (11%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
           N P L V   + L   D++  LP  I      L    +++N    +   TF+    L  +
Sbjct: 115 NVPLLTV---LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170

Query: 70  DLSNNRFV----GKFPKLF---LS---------LPKLKYLDLRFNEFEGSVPSKLFDKDL 113
            LS+NR         P LF   +S            ++ LD   N     V   +   +L
Sbjct: 171 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVN-VEL 228

Query: 114 DAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG 173
             + L  N         L    +  +  + N+L   +     KM + L  + + N+ L  
Sbjct: 229 TILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-LERLYISNNRLVA 286

Query: 174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNL 233
            L      +  L V D+S NHL   +  +      LE L + HN     +  S      L
Sbjct: 287 -LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHTL 341

Query: 234 QNFTYSFNYFT 244
           +N T S N + 
Sbjct: 342 KNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  102 bits (255), Expect = 2e-23
 Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 22/235 (9%)

Query: 13  PSLRVVASIDLNHADIAGYLPPEIGR-LTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL 71
            +++    + +    I  YLPP + + +  L +  +  N    +    F     L  + +
Sbjct: 93  HTIQK---LYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148

Query: 72  SNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQ-FGIPEN 130
           SNN         F +   L+ L L  N     V   L    L    ++ N      IP  
Sbjct: 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI-PSLFHANVSYNLLSTLAIPIA 206

Query: 131 LGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDV 190
           +       L  ++N +   + G +      L  + L ++NLT      +     L   D+
Sbjct: 207 V-----EELDASHNSINV-VRGPVNV---ELTILKLQHNNLTD--TAWLLNYPGLVEVDL 255

Query: 191 SFNHLQGSLPSSI-GNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
           S+N L+  +       M+ LE+L +++NR    +      +P L+    S N+  
Sbjct: 256 SYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (252), Expect = 4e-23
 Identities = 41/243 (16%), Positives = 87/243 (35%), Gaps = 18/243 (7%)

Query: 9   PFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYE 68
             N     V   + ++      Y   E   L +  I    ++    +  +     + +  
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 69  VDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFG 126
           ++L++ +        F     ++ L + FN     +P  +F     L  + L  N     
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS- 131

Query: 127 IPENL--GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKN 184
           +P  +      ++ L  +NN+L   I     +   +L  + L ++ LT  +     ++ +
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPS 187

Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
           L   +VS+N L     S++    ++E+L+ +HN    V+   V     L       N  T
Sbjct: 188 LFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNLT 239

Query: 245 GEP 247
              
Sbjct: 240 DTA 242

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 75.9 bits (187), Expect = 6e-15
 Identities = 40/210 (19%), Positives = 75/210 (35%), Gaps = 33/210 (15%)

Query: 44  IFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGS 103
           +        C  + S  +   + Y+V +        F    ++L   K +  + +     
Sbjct: 3   VKPRQPEYKC--IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-K 59

Query: 104 VPSKLFD--KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTL 161
           +P+ L D  + ++ + LND + +  I             FA                 T+
Sbjct: 60  LPAALLDSFRQVELLNLNDLQIEE-IDTY---------AFAYA--------------HTI 95

Query: 162 NEIILMNDNLTGCLPPQIGM-LKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQLNVAHNRF 219
            ++ +  + +   LPP +   +  LTV  +  N L  SLP  I  N   L  L++++N  
Sbjct: 96  QKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL 153

Query: 220 TGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
             +   +     +LQN   S N  T    S
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHVDLS 183

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 3/103 (2%)

Query: 149 CIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSI-GNMK 207
           CI  ++       +  I M           I  L N  +     + ++  LP+++  + +
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMR-KLPAALLDSFR 69

Query: 208 SLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSC 250
            +E LN+   +   +   +      +Q     FN     PP  
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (266), Expect = 3e-24
 Identities = 56/252 (22%), Positives = 90/252 (35%), Gaps = 32/252 (12%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
           N P L V   + L   D++  LP  I      L    +++N    +   TF+    L  +
Sbjct: 121 NVPLLTV---LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176

Query: 70  DLSNNRF----VGKFPKLF---LS---------LPKLKYLDLRFNEFEGSVPSKLFDKDL 113
            LS+NR     +   P LF   +S            ++ LD   N     V   +   +L
Sbjct: 177 QLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPVN-VEL 234

Query: 114 DAIFLNDNRF-QFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172
             + L  N         N     +  +  + N+L   +     KM + L  + + N+ L 
Sbjct: 235 TILKLQHNNLTDTAWLLNYPG--LVEVDLSYNELEKIMYHPFVKMQR-LERLYISNNRLV 291

Query: 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPN 232
             L      +  L V D+S NHL   +  +      LE L + HN     +  S      
Sbjct: 292 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLST--HHT 346

Query: 233 LQNFTYSFNYFT 244
           L+N T S N + 
Sbjct: 347 LKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  103 bits (259), Expect = 2e-23
 Identities = 46/240 (19%), Positives = 87/240 (36%), Gaps = 22/240 (9%)

Query: 13  PSLRVVASIDLNHADIAGYLPPEIGR-LTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL 71
            +++    + +    I  YLPP + + +  L +  +  N    +    F     L  + +
Sbjct: 99  HTIQK---LYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154

Query: 72  SNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQ-FGIPEN 130
           SNN         F +   L+ L L  N     V   L    L    ++ N      IP  
Sbjct: 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI-PSLFHANVSYNLLSTLAIPIA 212

Query: 131 LGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDV 190
           +       L  ++N +   + G +      L  + L ++NLT      +     L   D+
Sbjct: 213 V-----EELDASHNSINV-VRGPVNV---ELTILKLQHNNLTD--TAWLLNYPGLVEVDL 261

Query: 191 SFNHLQGSLPSSI-GNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           S+N L+  +       M+ LE+L +++NR    +      +P L+    S N+      +
Sbjct: 262 SYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERN 319

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  102 bits (256), Expect = 4e-23
 Identities = 41/243 (16%), Positives = 87/243 (35%), Gaps = 18/243 (7%)

Query: 9   PFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYE 68
             N     V   + ++      Y   E   L +  I    ++    +  +     + +  
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 69  VDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFG 126
           ++L++ +        F     ++ L + FN     +P  +F     L  + L  N     
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS- 137

Query: 127 IPENL--GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKN 184
           +P  +      ++ L  +NN+L   I     +   +L  + L ++ LT  +     ++ +
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPS 193

Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
           L   +VS+N L     S++    ++E+L+ +HN    V+   V     L       N  T
Sbjct: 194 LFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQHNNLT 245

Query: 245 GEP 247
              
Sbjct: 246 DTA 248

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 58.4 bits (141), Expect = 4e-09
 Identities = 27/189 (14%), Positives = 55/189 (29%), Gaps = 53/189 (28%)

Query: 56  VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDL 113
           + S  +   + Y+V +        F    ++L   K +  + +     +P+ L D  + +
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77

Query: 114 DAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG 173
           + + LND + +  I             FA                               
Sbjct: 78  ELLNLNDLQIEE-IDTY---------AFAY------------------------------ 97

Query: 174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQLNVAHNRFTGVIPSSVCQLPN 232
                      +    + FN ++  LP  +  N+  L  L +  N  + +        P 
Sbjct: 98  --------AHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPK 148

Query: 233 LQNFTYSFN 241
           L   + S N
Sbjct: 149 LTTLSMSNN 157

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 3/102 (2%)

Query: 149 CIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSI-GNMK 207
           CI  ++       +  I M           I  L N  +     + ++  LP+++  + +
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDIT-LNNQKIVTFKNSTMR-KLPAALLDSFR 75

Query: 208 SLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
            +E LN+   +   +   +      +Q     FN     PP 
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH 117

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  104 bits (261), Expect = 2e-23
 Identities = 49/247 (19%), Positives = 90/247 (36%), Gaps = 20/247 (8%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
               L+V   ++L +  I          L +L + +++ N    +  S F  L  +  +D
Sbjct: 288 TLKDLKV---LNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 71  LSNNRFVGKFPKLFLSLPKLKYLDLRFNEFE--GSVPSKLFDKDLDAIFLNDNRFQFGIP 128
           L  N       + F  L KL+ LDLR N       +PS      +  IFL+ N+    +P
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS------IPDIFLSGNKLV-TLP 397

Query: 129 ENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTV 187
           +    +  +++  + N L              L  +IL  +  + C   Q      +L  
Sbjct: 398 KINLTA--NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455

Query: 188 FDVSFNHLQGSLPSSI-----GNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY 242
             +  N LQ +  + +       +  L+ L + HN    + P     L  L+  + + N 
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515

Query: 243 FTGEPPS 249
            T    +
Sbjct: 516 LTVLSHN 522

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  102 bits (257), Expect = 5e-23
 Identities = 39/261 (14%), Positives = 85/261 (32%), Gaps = 30/261 (11%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
               L++   ++L        +  E    L +L I  + S++   + P  F+ L  L+E+
Sbjct: 46  FLEQLQL---LELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102

Query: 70  DLSNNRFVGKF--PKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQF 125
            L              F +L  L  LDL  N+         F     L +I  + N+   
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162

Query: 126 GIPE---NLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIIL---------------- 166
                   L    +S    A N L   +    GK       ++L                
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITG 222

Query: 167 -MNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMK--SLEQLNVAHNRFTGVI 223
             ++ ++      + +  ++      F++++    ++   +   S+  L+++H     + 
Sbjct: 223 NFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN 282

Query: 224 PSSVCQLPNLQNFTYSFNYFT 244
                 L +L+    ++N   
Sbjct: 283 SRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 93.3 bits (232), Expect = 5e-20
 Identities = 39/250 (15%), Positives = 85/250 (34%), Gaps = 23/250 (9%)

Query: 11  NSPSLRVVASIDLNHADIAG-YLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKL--LY 67
           N  +L     +DL+   I   YL P  G+L  L     +SN+   V       L+   L 
Sbjct: 121 NLKALT---RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 68  EVDLSNNRFVGKFPKLFLSLPK------LKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
              L+ N    +    +           L+ LD+  N +     +  F   +        
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT-VDITGNFSNAISKS----Q 232

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKT-LNEIILMNDNLTGCLPPQIG 180
            F   +  ++         F  +++      +   + ++ +  + L +  +         
Sbjct: 233 AFSLILAHHI-----MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287

Query: 181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF 240
            LK+L V ++++N +      +   + +L+ LN+++N    +  S+   LP +       
Sbjct: 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 241 NYFTGEPPSC 250
           N+        
Sbjct: 348 NHIAIIQDQT 357

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 91.0 bits (226), Expect = 3e-19
 Identities = 45/247 (18%), Positives = 93/247 (37%), Gaps = 26/247 (10%)

Query: 13  PSLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL 71
            +L+V   ++L++  + G L       L  +A   +  N    +   TF+ L+ L  +DL
Sbjct: 314 DNLQV---LNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369

Query: 72  SNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQ----FGI 127
            +N            +P +  + L  N+   ++P        + I L++NR +       
Sbjct: 370 RDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKINLT--ANLIHLSENRLENLDILYF 421

Query: 128 PENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-----GML 182
              + +  + +L+   N    C          +L ++ L  + L      ++       L
Sbjct: 422 LLRVPH--LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY 242
            +L V  ++ N+L    P    ++ +L  L++  NR T +  + +    NL+    S N 
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQ 537

Query: 243 FTGEPPS 249
                P 
Sbjct: 538 LLAPNPD 544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 90.6 bits (225), Expect = 4e-19
 Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 17/230 (7%)

Query: 28  IAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLY--EVDLSNNRFVGKFPKLFL 85
           I+      +     +       +       +TF  L       +DLS+        ++F 
Sbjct: 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287

Query: 86  SLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENLGNSP-VSVLVFA 142
           +L  LK L+L +N+    +  + F    +L  + L+ N        N    P V+ +   
Sbjct: 288 TLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 143 NNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSS 202
            N +      +   + K L  +     +L       I  + ++    +S N L  +LP  
Sbjct: 347 KNHIAIIQDQTFKFLEK-LQTL-----DLRDNALTTIHFIPSIPDIFLSGNKLV-TLPK- 398

Query: 203 IGNMKSLEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSFNYFTGEPPSCT 251
             N+ +   ++++ NR   + I   + ++P+LQ    + N F+      T
Sbjct: 399 -INL-TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 87.9 bits (218), Expect = 3e-18
 Identities = 40/210 (19%), Positives = 69/210 (32%), Gaps = 36/210 (17%)

Query: 50  NRFCG--VVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSK 107
            RFC    VP      + L    LS N         F  L +L+ L+L       ++  +
Sbjct: 11  YRFCNLTQVPQVLNTTERL---LLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 108 LFD--KDLDAIFLNDNRFQFGIPENL--GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNE 163
            F    +L  + L  ++  F +  +   G   +  L                     L++
Sbjct: 68  AFRNLPNLRILDLGSSKIYF-LHPDAFQGLFHLFELRLYFCG---------------LSD 111

Query: 164 IILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG-SLPSSIGNMKSLEQLNVAHNRFTGV 222
            +L +             LK LT  D+S N ++   L  S G + SL+ ++ + N+   V
Sbjct: 112 AVLKDGYFRN--------LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163

Query: 223 IPSS--VCQLPNLQNFTYSFNYFTGEPPSC 250
                   Q   L  F+ + N         
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVD 193

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 13  PSLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL 71
             L+V   + LNH  +   LPP +   LT L    +NSNR   +  +       L  +D+
Sbjct: 480 SHLQV---LYLNHNYLN-SLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDI 533

Query: 72  SNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLF 109
           S N+ +   P +F     L  LD+  N+F        F
Sbjct: 534 SRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTF 568

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  103 bits (257), Expect = 3e-23
 Identities = 54/273 (19%), Positives = 96/273 (35%), Gaps = 55/273 (20%)

Query: 9   PFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKL--- 65
           P   P LR   +++++   +   LP     L +L+IF          +PS   +L +   
Sbjct: 77  PALPPELR---TLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL-PALPSGLCKLWIFGN 131

Query: 66  -----------LYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDL 113
                      L E+ +S+N+     P L     +L  L    N+   S+P      ++L
Sbjct: 132 QLTSLPVLPPGLQELSVSDNQL-ASLPAL---PSELCKLWAYNNQLT-SLPMLPSGLQEL 186

Query: 114 DAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG 173
               ++DN+    +P       +  L   NN L   +P         L E+I+  + LT 
Sbjct: 187 S---VSDNQLAS-LPTLPSE--LYKLWAYNNRLT-SLPALPSG----LKELIVSGNRLT- 234

Query: 174 CLPPQIGMLK-----------------NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAH 216
            LP     LK                  L    V  N L   LP S+ ++ S   +N+  
Sbjct: 235 SLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 217 NRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           N  +     ++ ++ +   ++     F     S
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGAS 326

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 84.2 bits (208), Expect = 4e-17
 Identities = 44/249 (17%), Positives = 80/249 (32%), Gaps = 33/249 (13%)

Query: 9   PFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYE 68
           P   P L+    + ++   +A  LP     L  L      +N+    +P     L+ L  
Sbjct: 137 PVLPPGLQ---ELSVSDNQLAS-LPALPSELCKL---WAYNNQL-TSLPMLPSGLQEL-- 186

Query: 69  VDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIP 128
             +S+N+     P L   L KL   + R        PS L  K+L    ++ NR    +P
Sbjct: 187 -SVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPAL-PSGL--KELI---VSGNRLT-SLP 237

Query: 129 ENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVF 188
                  +  L+ + N L   +P         L  + +  + LT  LP  +  L + T  
Sbjct: 238 VLPSE--LKELMVSGNRLT-SLPMLPSG----LLSLSVYRNQLT-RLPESLIHLSSETTV 289

Query: 189 DVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTY--SFNYFTGE 246
           ++  N L          ++ +                +    P      +  + ++    
Sbjct: 290 NLEGNPLS-ERTLQ--ALREITSAPGYSGPII-RFDMAGASAPRETRALHLAAADWLVPA 345

Query: 247 PPSCTAAAG 255
                A A 
Sbjct: 346 REGEPAPAD 354

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 24/126 (19%)

Query: 138 VLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG 197
           VL    + L   +P  +      +  +++ ++NLT  LP     L+ L   +VS N L  
Sbjct: 44  VLNVGESGLT-TLPDCLPA---HITTLVIPDNNLT-SLPALPPELRTL---EVSGNQLT- 94

Query: 198 SLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQL--------------PNLQNFTYSFNYF 243
           SLP     +  L   +         +PS +C+L              P LQ  + S N  
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQL 153

Query: 244 TGEPPS 249
              P  
Sbjct: 154 ASLPAL 159

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 8/91 (8%)

Query: 161 LNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFT 220
              + +    LT  LP  +    ++T   +  N+L  SLP+       L  L V+ N+ T
Sbjct: 42  NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPE---LRTLEVSGNQLT 94

Query: 221 GVIPSSVCQLPNLQNFTYSFNYFTGEPPSCT 251
             +P     L  L  F+    +    P    
Sbjct: 95  -SLPVLPPGLLELSIFSNPLTHLPALPSGLC 124

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF 240
           +     V +V  + L  +LP  +     +  L +  N  T  +P+     P L+    S 
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSG 90

Query: 241 NYFTGEPPS 249
           N  T  P  
Sbjct: 91  NQLTSLPVL 99

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  101 bits (253), Expect = 5e-23
 Identities = 54/220 (24%), Positives = 86/220 (39%), Gaps = 29/220 (13%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
           LP     L  L + + N      + P        L  + +SNN+   K P+L  +   LK
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE-KLPELQ-NSSFLK 156

Query: 92  YLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPE--NLGNSPVSVLVFANNDLGGC 149
            +D+  N  +  +P       L+ I   +N+ +  +PE  NL    ++ +   NN L   
Sbjct: 157 IIDVDNNSLK-KLPDLP--PSLEFIAAGNNQLEE-LPELQNLPF--LTAIYADNNSLK-K 209

Query: 150 IPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSL 209
           +P         L  I+  N+ L     P++  L  LT      N L+ +LP    +   L
Sbjct: 210 LPDLPLS----LESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS---L 259

Query: 210 EQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           E LNV  N  T  +P     L  L      F+  +  PP+
Sbjct: 260 EALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.8 bits (239), Expect = 3e-21
 Identities = 46/232 (19%), Positives = 83/232 (35%), Gaps = 29/232 (12%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
            ++LN+  +   LP     L  L     + N     +P   + LK L   + +       
Sbjct: 75  ELELNNLGL-SSLPELPPHLESL---VASCNSL-TELPELPQSLKSLLVDNNNLK----A 125

Query: 80  FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVL 139
              L    P L+YL +  N+ E  +P       L  I +++N  +  +P+   +  +  +
Sbjct: 126 LSDL---PPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNNSLKK-LPDLPPS--LEFI 178

Query: 140 VFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSL 199
              NN L   +P  +  +   L  I   N++L   LP     L+++       N L    
Sbjct: 179 AAGNNQLE-ELP-ELQNL-PFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNIL--EE 229

Query: 200 PSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCT 251
              + N+  L  +   +N     +P      P+L+      NY T  P    
Sbjct: 230 LPELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTDLPELPQ 277

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.1 bits (232), Expect = 3e-20
 Identities = 43/243 (17%), Positives = 74/243 (30%), Gaps = 40/243 (16%)

Query: 8   SPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLY 67
              N  S           ++     PP  G   ++A+  +                +  +
Sbjct: 29  EAENVKSKT---EYYNAWSEWERNAPPGNGEQREMAVSRLRDC-----------LDRQAH 74

Query: 68  EVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFG 126
           E++L+N       P+     P L+ L    N     +P      K L     N       
Sbjct: 75  ELELNNLGLS-SLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALS-D 128

Query: 127 IPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLT 186
           +P  L       L  +NN L   +P  +      L  I + N++L   LP       +L 
Sbjct: 129 LPPLL-----EYLGVSNNQL-EKLP-ELQNS-SFLKIIDVDNNSLK-KLPDLPP---SLE 176

Query: 187 VFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246
                 N L+  LP  + N+  L  +   +N    +         +L++     N    E
Sbjct: 177 FIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILE-E 229

Query: 247 PPS 249
            P 
Sbjct: 230 LPE 232

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.9 bits (221), Expect = 5e-19
 Identities = 36/213 (16%), Positives = 66/213 (30%), Gaps = 31/213 (14%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
           LP     LT L +     +            L  L   + S+N    +   L    P L+
Sbjct: 272 LPELPQSLTFLDVSENIFSGL----SELPPNLYYL---NASSN----EIRSLCDLPPSLE 320

Query: 92  YLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIP 151
            L++  N+    +P+      L+ +  + N     +PE   N  +  L    N L    P
Sbjct: 321 ELNVSNNKLI-ELPALP--PRLERLIASFNHLAE-VPELPQN--LKQLHVEYNPLR-EFP 373

Query: 152 GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQ 211
                +        L  ++    +P       NL    V  N L+   P    +   +E 
Sbjct: 374 DIPESVED------LRMNSHLAEVPELPQ---NLKQLHVETNPLR-EFPDIPES---VED 420

Query: 212 LNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
           L +   R       +      L++  +  ++  
Sbjct: 421 LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 30/181 (16%), Positives = 54/181 (29%), Gaps = 33/181 (18%)

Query: 85  LSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFAN 143
           +S   L+      +     +P +  + K     +   + ++   P   G         A 
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGE----QREMAV 62

Query: 144 NDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSI 203
           + L  C+        +  +E+ L N  L+  LP     L++L     S N L   LP   
Sbjct: 63  SRLRDCLD-------RQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELP 110

Query: 204 GNMKSLEQLNVAHNRFTGVIPS---------------SVCQLPNLQNFTYSFNYFTGEPP 248
            ++KSL   N      + + P                 +     L+      N     P 
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPD 170

Query: 249 S 249
            
Sbjct: 171 L 171

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.5 bits (245), Expect = 7e-22
 Identities = 46/233 (19%), Positives = 86/233 (36%), Gaps = 28/233 (12%)

Query: 22  DLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFP 81
            LN  +++  LP  +     + +  I  N     +P     L+ L   D  +NR     P
Sbjct: 65  QLNRLNLSS-LPDNLP--PQITVLEITQNAL-ISLPELPASLEYL---DACDNRLS-TLP 116

Query: 82  KLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVF 141
           +L      LK+LD+  N+    +P       L+ I  ++N+    +PE   +  + VL  
Sbjct: 117 EL---PASLKHLDVDNNQLT-MLPELP--ALLEYINADNNQLTM-LPELPTS--LEVLSV 167

Query: 142 ANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLT----VFDVSFNHLQG 197
            NN L   +P     + + L+    ++ NL   LP       +       F    N +  
Sbjct: 168 RNNQLT-FLPELPESL-EALD----VSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT- 220

Query: 198 SLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSC 250
            +P +I ++     + +  N  +  I  S+ Q     ++     YF+      
Sbjct: 221 HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.6 bits (131), Expect = 5e-08
 Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 9/87 (10%)

Query: 150 IPGSIGKMGKTLNEIILMN---DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNM 206
                        +  L     +     L     ++   +   ++  +L  SLP ++   
Sbjct: 25  TYADYFSAWDKWEKQALPGENRNEAVSLLK--ECLINQFSELQLNRLNLS-SLPDNLP-- 79

Query: 207 KSLEQLNVAHNRFTGVIPSSVCQLPNL 233
             +  L +  N     +P     L  L
Sbjct: 80  PQITVLEITQNALI-SLPELPASLEYL 105

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.9 bits (239), Expect = 6e-21
 Identities = 49/219 (22%), Positives = 83/219 (37%), Gaps = 12/219 (5%)

Query: 38  RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR--FVGKFPKLFLSLPKLKYLDL 95
           +L  L      SN+  G    +   L  L  +DLS N   F G   +       LKYLDL
Sbjct: 323 KLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

Query: 96  RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVS--VLVFANNDLGGCIPG 152
            FN    ++ S     + L+ +    +  +     ++  S  +   L  ++        G
Sbjct: 381 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 153 SIGKMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTVFDVSFNHLQGSLPSSI-GNMKSLE 210
               +   L  + +  ++      P I   L+NLT  D+S   L+  L  +   ++ SL+
Sbjct: 440 IFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQ 497

Query: 211 QLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
            LN+A N+   V      +L +LQ      N +    P 
Sbjct: 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 57/220 (25%)

Query: 4   FCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRR 62
            C++S F + SL+    +DL+   +   +      L  L       +    +   S F  
Sbjct: 364 CCSQSDFGTTSLK---YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 63  LKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLDAIFLND 120
           L+ L  +D+S+      F  +F  L  L+ L +  N F+ +    +F +  +L  + L+ 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 121 NRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIG 180
            + +  +             F +                                     
Sbjct: 480 CQLEQ-LSPT---------AFNS------------------------------------- 492

Query: 181 MLKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQLNVAHNRF 219
            L +L V +++ N L+ S+P  I   + SL+++ +  N +
Sbjct: 493 -LSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 36/237 (15%), Positives = 71/237 (29%), Gaps = 15/237 (6%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
           ++DL+   +            +L +  ++      +    ++ L  L  + L+ N     
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91

Query: 80  FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQ-FGIPENLGNSP- 135
               F  L  L+ L         S+ +        L  + +  N  Q F +PE   N   
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 136 VSVLVFANNDLGGCIPGSIGKMGK--TLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFN 193
           +  L  ++N +       +  + +   LN  + ++ N    + P       L    +  N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210

Query: 194 HLQGSLPS-SIGNMKSLEQLNVAHNRFTG-----VIPSSVCQLPNLQNFTYSFNYFT 244
               ++    I  +  LE   +    F           S   L  L N T       
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA--LEGLCNLTIEEFRLA 265

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 83.6 bits (207), Expect = 4e-17
 Identities = 33/238 (13%), Positives = 62/238 (26%), Gaps = 59/238 (24%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
           +      +    +P  +          ++ N    +   +F     L  +DLS       
Sbjct: 11  TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 80  FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENLGNSPVS 137
               + SL  L  L L  N  + S+    F     L  +   +      +          
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENF------- 118

Query: 138 VLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQ- 196
                +                                      LK L   +V+ N +Q 
Sbjct: 119 --PIGH--------------------------------------LKTLKELNVAHNLIQS 138

Query: 197 GSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTY----SFNYFTGEPPSC 250
             LP    N+ +LE L+++ N+   +  + +  L  +         S N      P  
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 48/249 (19%), Positives = 86/249 (34%), Gaps = 16/249 (6%)

Query: 8   SPFNSPSLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTF-RRLKL 65
           S         +    L + D       ++   LT+++ F + S     V   ++    + 
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH 308

Query: 66  LYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQF 125
           L  V+    +F        L L  LK L    N+  G+  S++    L+ + L+ N   F
Sbjct: 309 LELVNCKFGQFP------TLKLKSLKRLTFTSNKG-GNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 126 -GIPENLGNSPVS--VLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-GM 181
            G          S   L  + N +   +  +   + + L  +   + NL       +   
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSV-CQLPNLQNFTYSF 240
           L+NL   D+S  H + +       + SLE L +A N F       +  +L NL     S 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 241 NYFTGEPPS 249
                  P+
Sbjct: 480 CQLEQLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 81.3 bits (201), Expect = 2e-16
 Identities = 43/255 (16%), Positives = 81/255 (31%), Gaps = 26/255 (10%)

Query: 13  PSLRVVASIDLNHADIAGYLPPE-IGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL 71
           P L+V   +DL+  +I   +       L+ L+   +  N    +    F  L  L ++  
Sbjct: 52  PELQV---LDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 72  SNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPE 129
                          L  LK L++  N  +     + F    +L+ + L+ N+ Q  I  
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166

Query: 130 ----NLGNSPVSV--LVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQ-IGML 182
                L   P+    L  + N +   I     K    L+++ L N+  +  +    I  L
Sbjct: 167 TDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 183 KNLTVFDVSFNHLQGS---LPSSIGNMKSLEQLNVAHNR------FTGVIPSSVCQLPNL 233
             L V  +     +            ++ L  L +   R      +   I      L N+
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 234 QNFTYSFNYFTGEPP 248
            +F+           
Sbjct: 285 SSFSLVSVTIERVKD 299

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.7 bits (189), Expect = 7e-15
 Identities = 40/245 (16%), Positives = 76/245 (31%), Gaps = 22/245 (8%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTF-------RRLKLLYEVDLS 72
           S+DL+   +  ++ P   +   L    + +N     V  T           +L+     +
Sbjct: 181 SLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239

Query: 73  NNRFVGKFPKLFLSLPKL--KYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIP 128
                         L  L  +   L + ++       LF+   ++ +  L     +  + 
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVK 298

Query: 129 ENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVF 188
           +   N     L   N   G   P    K  K L        N  G    ++  L +L   
Sbjct: 299 DFSYNFGWQHLELVNCKFG-QFPTLKLKSLKRLT----FTSNKGGNAFSEVD-LPSLEFL 352

Query: 189 DVSFNHLQ--GSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246
           D+S N L   G    S     SL+ L+++ N     + S+   L  L++  +  +     
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 411

Query: 247 PPSCT 251
                
Sbjct: 412 SEFSV 416

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 13  PSLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL 71
            SL V   + +          P+I   L +L    ++  +   + P+ F  L  L  +++
Sbjct: 445 SSLEV---LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 72  SNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNR 122
           ++N+       +F  L  L+ + L  N ++ S P   +       +LN N 
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR----WLNKNS 548

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.6 bits (220), Expect = 1e-18
 Identities = 32/243 (13%), Positives = 70/243 (28%), Gaps = 33/243 (13%)

Query: 10  FNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
            +  +  V    D         +P  +     +    ++ N+   +     R    L  +
Sbjct: 2   LSCDASGVC---DGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVL 55

Query: 70  DLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGI 127
            L ++R        F SL  L++LDL  N    S+ S  F     L  + L  N +Q  +
Sbjct: 56  ILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQ-TL 113

Query: 128 PENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQ-IGMLKNLT 186
                                        +   L  + + N      +       L +L 
Sbjct: 114 GV---------------------TSLFPNL-TNLQTLRIGNVETFSEIRRIDFAGLTSLN 151

Query: 187 VFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246
             ++    L+     S+ +++ +  L +  +    ++      L +++            
Sbjct: 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211

Query: 247 PPS 249
             S
Sbjct: 212 QFS 214

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 38/248 (15%), Positives = 73/248 (29%), Gaps = 54/248 (21%)

Query: 5   CARSPFNSPSLRVVASIDLNHADIAGYLPPEIG--------RLTDLAIFHINSNRFCGVV 56
             +       L  V   D     +  + P E              +   HI        +
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 57  PSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAI 116
            + +  L+ +  + + N++           L  L++LDL  N              +   
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN-------------LMVEE 349

Query: 117 FLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP 176
           +L ++    G   +L       LV + N L            +++ +   +   L     
Sbjct: 350 YLKNSAC-KGAWPSL-----QTLVLSQNHL------------RSMQKTGEILLTLK---- 387

Query: 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNF 236
                  NLT  D+S N     +P S    + +  LN++      V+ +  C    L+  
Sbjct: 388 -------NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVL 436

Query: 237 TYSFNYFT 244
             S N   
Sbjct: 437 DVSNNNLD 444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.3 bits (214), Expect = 6e-18
 Identities = 39/238 (16%), Positives = 85/238 (35%), Gaps = 10/238 (4%)

Query: 12  SPSLRVVASIDLNHADIAGYLPPE-IGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
           + +++    +DL+   I  Y+    +    +L +  + S+R   +    F  L  L  +D
Sbjct: 25  TAAMKS---LDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80

Query: 71  LSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQFGIP 128
           LS+N         F  L  LKYL+L  N ++    + LF    +L  + + +      I 
Sbjct: 81  LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 129 EN--LGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLT 186
                G + ++ L      L      S+  + + ++ + L        L     +L ++ 
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSI-RDIHHLTLHLSESAFLLEIFADILSSVR 199

Query: 187 VFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
             ++   +L     S +   +    +     R + +   S  +L  L  +    +   
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 85.5 bits (212), Expect = 9e-18
 Identities = 35/212 (16%), Positives = 65/212 (30%), Gaps = 41/212 (19%)

Query: 13  PSLRVVASIDLNH---ADIAGYLPPEIGRLTDLAIFHINSNRF--CGVVPSTFRRLKLLY 67
            SL     +DL+     +         G    L    ++ N              LK L 
Sbjct: 334 KSLEF---LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT 390

Query: 68  EVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGI 127
            +D+S N F    P       K+++L+L        V + +    L+ + +++N      
Sbjct: 391 SLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQT-LEVLDVSNNNLDS-F 446

Query: 128 PENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTV 187
              L                             L E+ +  + L   LP    +   L V
Sbjct: 447 SLFLPR---------------------------LQELYISRNKLK-TLPD-ASLFPVLLV 477

Query: 188 FDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRF 219
             +S N L+         + SL+++ +  N +
Sbjct: 478 MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 42/256 (16%), Positives = 86/256 (33%), Gaps = 30/256 (11%)

Query: 13  PSLRVVASIDLNHADIAGYLPPE-IGRLTDLAIFHINSNRFCGV-VPSTFRRLKLLYEVD 70
            SL     +DL+   ++  L     G L+ L   ++  N +  + V S F  L  L  + 
Sbjct: 74  GSLEH---LDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129

Query: 71  LS-NNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGI 127
           +     F       F  L  L  L+++      +  S+     +D+  + L+ +   F +
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAF-L 187

Query: 128 PENLGN--SPVSVLVFANNDLGG--CIPGSIGKMGKTLNEIILMNDNLTGC-------LP 176
            E   +  S V  L   + +L      P  + ++   + ++      LT         L 
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMK--------SLEQLNVAHNRFTGVIPSSVC 228
             I  L  +   D + N L    PS    +         ++ +L++        + +   
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 229 QLPNLQNFTYSFNYFT 244
            L  ++  T   +   
Sbjct: 308 LLEKVKRITVENSKVF 323

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 77.5 bits (191), Expect = 3e-15
 Identities = 35/267 (13%), Positives = 76/267 (28%), Gaps = 31/267 (11%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
              SL     +++    +  Y    +  + D+    ++ +    ++      L  +  ++
Sbjct: 146 GLTSLNE---LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 71  LSNNR--------FVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNR 122
           L +                   +     +   L    F   +    +  +L  +  +D  
Sbjct: 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262

Query: 123 FQ------------FGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDN 170
                               +    +  L      L   +      + K +  I +  ++
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK-VKRITV-ENS 320

Query: 171 LTGCLPPQIGM-LKNLTVFDVSFNHLQGSL---PSSIGNMKSLEQLNVAHNRFT--GVIP 224
               +P      LK+L   D+S N +        +  G   SL+ L ++ N         
Sbjct: 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380

Query: 225 SSVCQLPNLQNFTYSFNYFTGEPPSCT 251
             +  L NL +   S N F   P SC 
Sbjct: 381 EILLTLKNLTSLDISRNTFHPMPDSCQ 407

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 3/85 (3%)

Query: 166 LMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPS 225
             + + T  +P  +     +   D+SFN +       +    +L+ L +  +R   +   
Sbjct: 12  GRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 226 SVCQLPNLQNFTYSFNYFTGEPPSC 250
           +   L +L++   S N+ +    S 
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSW 93

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 18/97 (18%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 13  PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLS 72
            +L V   +D+++ ++       + RL +L   +I+ N+   +  ++     +L  + +S
Sbjct: 431 QTLEV---LDVSNNNLD-SFSLFLPRLQEL---YISRNKLKTLPDASL--FPVLLVMKIS 481

Query: 73  NNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLF 109
            N+       +F  L  L+ + L  N ++ S P   +
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 518

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 88.6 bits (219), Expect = 2e-18
 Identities = 66/315 (20%), Positives = 91/315 (28%), Gaps = 40/315 (12%)

Query: 268  CSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVK--PVPAPRPANS 325
              K    +       G  G   P ++      +           P+V      A     +
Sbjct: 1450 LVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFT 1509

Query: 326  PGPFIRPSPPPPPTSKSSPSTRSH-PTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHL 384
                        P      +  S       P  SP    +SP SP   P +   SP +  
Sbjct: 1510 AYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPS 1569

Query: 385  PPTPPPVYNVSPSPKHFPPPPSHYHNTPP---PPTKKASP-STHYAPPPPPRFYYVPKQS 440
                 P Y  SP+   + P    Y  T P   P +   SP S  Y+P  P      P  S
Sbjct: 1570 YSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1627

Query: 441  PPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPV 500
            P  P     Y P    +    P    ++   +P+  AYSP  P     +P +P+      
Sbjct: 1628 PTSPS----YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSY---SPTSPSYSPTSP 1680

Query: 501  EYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPS 560
             Y P      P +P Y   SP  S                    P SP Y     P  P+
Sbjct: 1681 SYSPTSPSYSPTSPNYSPTSPSYS--------------------PTSPGY----SPGSPA 1716

Query: 561  PSPPTPPPSPYDNTP 575
             SP        +N  
Sbjct: 1717 YSPKQDEQKHNENEN 1731

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 82.4 bits (203), Expect = 2e-16
 Identities = 63/297 (21%), Positives = 92/297 (30%), Gaps = 18/297 (6%)

Query: 244  TGEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSS 303
               P         G        ++ S +            +  SP   +    +     +
Sbjct: 1452 KYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMF--SPLVDSGSNDAMAGGFT 1509

Query: 304  PPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSF 363
                        P  A   A +   F   SP   PTS +   T    +P  P+ SP    
Sbjct: 1510 AYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPS 1569

Query: 364  HSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPP--PTKKASP 421
            +SP SP   P +   SP +       P Y  SP+   + P    Y  T P   PT     
Sbjct: 1570 YSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPT----- 1622

Query: 422  STHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPP 481
            S  Y+P  P    Y P  SP   P    Y P    +    P    ++   +P+  +YSP 
Sbjct: 1623 SPSYSPTSPS---YSP-TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPT 1678

Query: 482  PPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPP 538
             P     +P +P+       Y P      P +P Y   SP  S        + +   
Sbjct: 1679 SPSY---SPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 81.7 bits (201), Expect = 4e-16
 Identities = 60/293 (20%), Positives = 90/293 (30%), Gaps = 28/293 (9%)

Query: 298  PPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPAN 357
                   P  K             P ++    +            SP   S         
Sbjct: 1448 ESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGG 1507

Query: 358  SPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTK 417
                          P   + E+P +       P ++ + SP + P  P+           
Sbjct: 1508 FTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPT-SPTYSPTSPA----------- 1555

Query: 418  KASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFA 477
              SP++    P  P   Y P  SP   P    Y P    +    P    ++   +P+  +
Sbjct: 1556 -YSPTSPSYSPTSP--SYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1611

Query: 478  YSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNP 537
            YSP  P     +P +P+       Y P      P +P Y   SP  S      P+     
Sbjct: 1612 YSPTSPSY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS------PTSPAYS 1662

Query: 538  PSWHHQTPPSPNYHSYA---VPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASP 587
            P+    +P SP+Y   +    P  PS SP +P  SP   +  P   G S  SP
Sbjct: 1663 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSPGSP 1715

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 72.0 bits (176), Expect = 3e-13
 Identities = 57/295 (19%), Positives = 85/295 (28%), Gaps = 27/295 (9%)

Query: 311  PPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPP 370
              +VK +P  +                P S  S    +           P    S  +  
Sbjct: 1448 ESLVKYMPEQKITEIEDG---QDGGVTPYSNESGLVNADLDVKDELMFSP-LVDSGSNDA 1503

Query: 371  PP----PPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYA 426
                       +      P         SP      P  S    T  P +   SP++   
Sbjct: 1504 MAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSY 1563

Query: 427  PPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSP------ 480
             P  P   Y P  SP   P    Y P    +    P    ++   +P+  +YSP      
Sbjct: 1564 SPTSP--SYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1620

Query: 481  -----PPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPP--PSGCDIIPPSH 533
                   P +   +P +P+       Y P      P +P Y   SP   P+     P S 
Sbjct: 1621 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSP 1680

Query: 534  HHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASPP 588
             ++P S    +P SPNY   +  P  SP+ P   P     +P       +     
Sbjct: 1681 SYSPTS-PSYSPTSPNYSPTS--PSYSPTSPGYSPGSPAYSPKQDEQKHNENENS 1732

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 57.8 bits (139), Expect = 9e-09
 Identities = 41/209 (19%), Positives = 64/209 (30%), Gaps = 19/209 (9%)

Query: 224  PSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSG 283
            P+S    P    ++ +   ++   PS +  +        +               S  S 
Sbjct: 1544 PTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1603

Query: 284  WGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSS 343
                 +P+ SP S   S +S                P  + +   +   SP   PTS S 
Sbjct: 1604 SYSPTSPSYSPTSPSYSPTS----------------PSYSPTSPSYSPTSPSYSPTSPSY 1647

Query: 344  PSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPP 403
              T    +P  PA SP    +SP SP   P +   SP +       P Y  SP+   + P
Sbjct: 1648 SPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNY--SPTSPSYSP 1705

Query: 404  PPSHYHNTPPPPTKKASPSTHYAPPPPPR 432
                Y    P  +        +      R
Sbjct: 1706 TSPGYSPGSPAYS-PKQDEQKHNENENSR 1733

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 57.4 bits (138), Expect = 1e-08
 Identities = 47/232 (20%), Positives = 67/232 (28%), Gaps = 19/232 (8%)

Query: 378  ESPRTHLPPTPPPVYNVSPSPKHFP---PPPSHYHNTPPPPTKKASPSTHYAPPPPPRFY 434
            ES   ++P                P          +         SP             
Sbjct: 1448 ESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGG 1507

Query: 435  YVPKQSPPPPPPVEYYPPPYQQHMAP---PPPPGESAEVPAPSYF--AYSPPPPPARDEN 489
            +              +    +   +P      PG S   P  S    AYSP  P     +
Sbjct: 1508 FTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTS 1567

Query: 490  PVAPAT-----PGAPVEYYPPKKGNPPPAPEYYHASP--PPSGCDIIPPSHHHNPPSWHH 542
            P    T     P +P  Y P      P +P Y   SP   P+     P S  ++P S   
Sbjct: 1568 PSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PS 1625

Query: 543  QTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPPVIPY 594
             +P SP+Y      P  SP+ P+  P+    +P  P    +  S  P    Y
Sbjct: 1626 YSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSY 1675

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 41.6 bits (97), Expect = 9e-04
 Identities = 28/138 (20%), Positives = 37/138 (26%), Gaps = 6/138 (4%)

Query: 460  PPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGN-PPPAPEYYH 518
                  +  +     Y   S       D       +P           G         Y 
Sbjct: 1458 KITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAYGGADYG 1517

Query: 519  ASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPP 578
             +  P G     P+      S    +P SP Y     P  P+ SP +P  SP   +  P 
Sbjct: 1518 EATSPFGAYGEAPTSPGFGVSSPGFSPTSPTY----SPTSPAYSPTSPSYSPTSPSYSPT 1573

Query: 579  IIGVSYASPP-PPVIPYY 595
                S  SP   P  P Y
Sbjct: 1574 SPSYSPTSPSYSPTSPSY 1591

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.7 bits (215), Expect = 3e-18
 Identities = 42/248 (16%), Positives = 75/248 (30%), Gaps = 49/248 (19%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRF--- 76
           S+D +++ I       I +LT L      SN    +      +   L  +   +N+    
Sbjct: 46  SLDCHNSSITDM--TGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL 100

Query: 77  -VGKFPKL--------------FLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
            V    KL                  P L YL+   N     +      + L  +  + N
Sbjct: 101 DVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT-EIDVSHNTQ-LTELDCHLN 158

Query: 122 RFQFGIPENLGNSPVSVLVFANN-----DLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP 176
           + +    +    + ++ L  + N     D+            K LN +    +N+T  L 
Sbjct: 159 K-KITKLDVTPQTQLTTLDCSFNKITELDVSQN---------KLLNRLNCDTNNITK-LD 207

Query: 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNF 236
             +     LT  D S N L   +   +  +  L   + + N  T +    V  L  L   
Sbjct: 208 --LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTL 259

Query: 237 TYSFNYFT 244
                   
Sbjct: 260 HCIQTDLL 267

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.0 bits (203), Expect = 8e-17
 Identities = 31/242 (12%), Positives = 63/242 (26%), Gaps = 43/242 (17%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
           ++  L     +D +          ++   T L     + N+   +      + KLL  ++
Sbjct: 146 HNTQLT---ELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLN 197

Query: 71  LSNNRFVGKFPKL----FLSLPKLKYLDLRFNEFEGSVP-SKLFDKDLDAIFLNDNRFQ- 124
              N        +         +L +LD   N+    +  + L    L     + N    
Sbjct: 198 CDTN-------NITKLDLNQNIQLTFLDCSSNKLT-EIDVTPL--TQLTYFDCSVNPLTE 247

Query: 125 --FGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGML 182
                   L     + L     DL   I  +       L             L   +   
Sbjct: 248 LDVSTLSKL-----TTLHCIQTDLL-EIDLT---HNTQLIYFQAEGCRKIKELD--VTHN 296

Query: 183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY 242
             L + D     +   L   +     L  L + +   T  +   V     L++ +    +
Sbjct: 297 TQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAH 350

Query: 243 FT 244
             
Sbjct: 351 IQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 33/207 (15%), Positives = 51/207 (24%), Gaps = 56/207 (27%)

Query: 57  PSTFRRLKLLYEVDLSNNRF-----VGKFPKL--------------FLSLPKLKYLDLRF 97
             +  +L  L  +D  N+       + K   L                    L YL    
Sbjct: 35  TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDS 94

Query: 98  NEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKM 157
           N+      + L    L  +  + N         L    VS                    
Sbjct: 95  NKLTNLDVTPL--TKLTYLNCDTN--------KLTKLDVSQN------------------ 126

Query: 158 GKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHN 217
              L  +    + LT  +   +     LT  D   N     L   +     L  L+ + N
Sbjct: 127 -PLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN 180

Query: 218 RFTGVIPSSVCQLPNLQNFTYSFNYFT 244
           + T +    V Q   L       N  T
Sbjct: 181 KITEL---DVSQNKLLNRLNCDTNNIT 204

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 139 LVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGS 198
            V A  ++      S  ++  TL  +   N ++T  +   I  L  LT    + N++  +
Sbjct: 23  EVAAAFEMQATDTISEEQL-ATLTSLDCHNSSITD-MTG-IEKLTGLTKLICTSNNIT-T 78

Query: 199 LPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           L   +    +L  L    N+ T +    V  L  L       N  T    S
Sbjct: 79  LD--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKLDVS 124

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 32/242 (13%), Positives = 65/242 (26%), Gaps = 62/242 (25%)

Query: 35  EIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRF----VGKFPKL------- 83
           ++  LT L  F  + N    +  ST  +L  L+             +    +L       
Sbjct: 228 DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH---CIQTDLLEIDLTHNTQLIYFQAEG 284

Query: 84  --------FLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSP 135
                        +L  LD +         S+     L  ++LN+          L    
Sbjct: 285 CRKIKELDVTHNTQLYLLDCQAAGITELDLSQN--PKLVYLYLNNTEL-----TEL---- 333

Query: 136 VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHL 195
                    D+              L  +  +N ++       +G +  L     +    
Sbjct: 334 ---------DVSHN---------TKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQT 373

Query: 196 QGSLPSSIGNMKSL------EQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
             ++P       SL      + L+   N     I      + +    T ++   + + P+
Sbjct: 374 I-TMPKETLTNNSLTIAVSPDLLDQFGNPMN--IEPGDGGVYDQATNTITWENLSTDNPA 430

Query: 250 CT 251
            T
Sbjct: 431 VT 432

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 5/84 (5%)

Query: 161 LNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFT 220
               +     +          L  LT  D   + +   +   I  +  L +L    N  T
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNIT 77

Query: 221 GVIPSSVCQLPNLQNFTYSFNYFT 244
            +    + Q  NL       N  T
Sbjct: 78  TL---DLSQNTNLTYLACDSNKLT 98

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 83.6 bits (207), Expect = 3e-17
 Identities = 49/242 (20%), Positives = 84/242 (34%), Gaps = 16/242 (6%)

Query: 3   VFCARS-----PFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP 57
           V C R      P   P+      +DL    I      E      L    +N N    V P
Sbjct: 16  VLCHRKRFVAVPEGIPTE--TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73

Query: 58  STFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLDA 115
             F  L  L  + L +NR       +F  L  L  LD+  N+    +   +F    +L +
Sbjct: 74  GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKS 132

Query: 116 IFLNDNRFQFGIPENL--GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG 173
           + + DN   + I      G + +  L     +L      ++  +   L  + L + N+  
Sbjct: 133 LEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNIN- 189

Query: 174 CLPPQI-GMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPN 232
            +       L  L V ++S      ++  +     +L  L++ H   T V   +V  L  
Sbjct: 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249

Query: 233 LQ 234
           L+
Sbjct: 250 LR 251

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.1 bits (203), Expect = 9e-17
 Identities = 45/241 (18%), Positives = 91/241 (37%), Gaps = 16/241 (6%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
           N  +LR    + L    +   +P  +   L++L    I+ N+   ++   F+ L  L  +
Sbjct: 78  NLFNLRT---LGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133

Query: 70  DLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQF-- 125
           ++ +N  V    + F  L  L+ L L       S+P++       L  + L         
Sbjct: 134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIR 192

Query: 126 -GIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQ-IGMLK 183
               + L    + VL  ++      +  +    G  L  + + + NLT  +P   +  L 
Sbjct: 193 DYSFKRLYR--LKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTA-VPYLAVRHLV 248

Query: 184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243
            L   ++S+N +     S +  +  L+++ +   +   V P +   L  L+    S N  
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

Query: 244 T 244
           T
Sbjct: 309 T 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 37/239 (15%), Positives = 76/239 (31%), Gaps = 14/239 (5%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
              +L     +D++   I   L   +   L +L    +  N    +    F  L  L ++
Sbjct: 102 GLSNLT---KLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157

Query: 70  DLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGI 127
            L          +    L  L  L LR      ++    F     L  + ++   +   +
Sbjct: 158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTM 216

Query: 128 PEN-LGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-GMLKNL 185
             N L    ++ L   + +L      ++  +   L  + L  + ++  +   +   L  L
Sbjct: 217 TPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY-LRFLNLSYNPIS-TIEGSMLHELLRL 274

Query: 186 TVFDVSFNHLQGSLPSSI-GNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243
               +    L   +       +  L  LNV+ N+ T +  S    + NL+      N  
Sbjct: 275 QEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.4 bits (191), Expect = 3e-15
 Identities = 36/233 (15%), Positives = 78/233 (33%), Gaps = 32/233 (13%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
           ++  +       +P  I   T+  +  +  NR   +    F     L E++L+ N     
Sbjct: 15  AVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 80  FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENLGNSPVS 137
            P  F +L  L+ L LR N  +  +P  +F    +L  + +++N+    + + +      
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVI-LLDYM------ 123

Query: 138 VLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTVFDVSFNHLQ 196
              F +                 L  + +  DN    +  +    L +L    +   +L 
Sbjct: 124 ---FQDL--------------YNLKSLEV-GDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165

Query: 197 GSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
                ++ ++  L  L + H     +   S  +L  L+    S   +      
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 41/199 (20%), Positives = 60/199 (30%), Gaps = 55/199 (27%)

Query: 55  VVPST-FRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--K 111
            VP       +LL   DL  NR        F S P L+ L+L  N    +V    F+   
Sbjct: 25  AVPEGIPTETRLL---DLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLF 80

Query: 112 DLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL 171
           +L  + L  NR +  IP  +         F                              
Sbjct: 81  NLRTLGLRSNRLK-LIPLGV---------FTG---------------------------- 102

Query: 172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLP 231
                     L NLT  D+S N +   L     ++ +L+ L V  N    +   +   L 
Sbjct: 103 ----------LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152

Query: 232 NLQNFTYSFNYFTGEPPSC 250
           +L+  T      T  P   
Sbjct: 153 SLEQLTLEKCNLTSIPTEA 171

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 82.6 bits (204), Expect = 9e-17
 Identities = 38/212 (17%), Positives = 81/212 (38%), Gaps = 35/212 (16%)

Query: 38  RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97
             +++ I +   +    V      ++     +D SNN       +    L +L+ L L+ 
Sbjct: 298 IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

Query: 98  NEFEGSVP--SKLFDK--DLDAIFLNDNRFQFGIPENLGNSPVS--VLVFANNDLGGCIP 151
           N+ +  +   +++  +   L  + ++ N   +   +   +   S   L  ++N L     
Sbjct: 358 NQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL----- 411

Query: 152 GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQ 211
                            D +  CLPP       + V D+  N ++ S+P  +  +++L++
Sbjct: 412 ----------------TDTIFRCLPP------RIKVLDLHSNKIK-SIPKQVVKLEALQE 448

Query: 212 LNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243
           LNVA N+   V      +L +LQ      N +
Sbjct: 449 LNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 44/228 (19%), Positives = 82/228 (35%), Gaps = 14/228 (6%)

Query: 22  DLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFP 81
           +++   I+     +I  L+ L I  I+ NR   +  S F+  + L  +DLS+N+   K  
Sbjct: 27  NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL-VKIS 85

Query: 82  KLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQFGIPENLGN-SPVSV 138
                   LK+LDL FN F+     K F     L  + L+    +      + + +   V
Sbjct: 86  --CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143

Query: 139 LVFANNDLGGCI-PGSI-GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQ 196
           L+      G    P  +     ++L+ +   N      L   +  + NL + ++      
Sbjct: 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203

Query: 197 G------SLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTY 238
                  S+ + +     L  L + +   T      + QL       Y
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 28/217 (12%), Positives = 63/217 (29%), Gaps = 19/217 (8%)

Query: 46  HINSNRFCGVVPSTFRRLKL--LYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGS 103
            +         P   +      L+ V  +N  F         ++  L+  +++    +  
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205

Query: 104 VPS------------KLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIP 151
                          KL +  L+ I    N F   I + + ++ V     +N  L G + 
Sbjct: 206 CSYFLSILAKLQTNPKLSNLTLNNIETTWNSF-IRILQLVWHTTVWYFSISNVKLQGQLD 264

Query: 152 GSIGKMGKT-LNEIILMNDNLTGCLPPQIGM---LKNLTVFDVSFNHLQGSLPSSIGNMK 207
                   T L  + +          PQ  +     N+ + + + +  +         + 
Sbjct: 265 FRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS 324

Query: 208 SLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
               L+ ++N  T  +  +   L  L+      N   
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 40/229 (17%), Positives = 77/229 (33%), Gaps = 22/229 (9%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
           +P ++       I +I+ N    +  S    L  L  + +S+NR       +F    +L+
Sbjct: 15  VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72

Query: 92  YLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPE-----NLGNSPVSVLVFANNDL 146
           YLDL  N+    +        L  + L+ N F   +P      N+    +  L  +   L
Sbjct: 73  YLDLSHNKLV-KISCHPTVN-LKHLDLSFNAFD-ALPICKEFGNMSQ--LKFLGLSTTHL 127

Query: 147 GGCIPGSIGKMGKTLNEIILMNDNLTGCLPP---QIGMLKNLTVFDVSFNHLQGSLPSSI 203
                  I  +      ++++ +       P   Q    ++L +   +       L  S+
Sbjct: 128 EKSSVLPIAHL-NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSV 186

Query: 204 GNMKSLEQLNVAHNRFTGV------IPSSVCQLPNLQNFTYSFNYFTGE 246
             + +LE  N+              I + +   P L N T +    T  
Sbjct: 187 KTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 36/246 (14%), Positives = 86/246 (34%), Gaps = 29/246 (11%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGR-LTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
           N  +L     + L +  I+  + P     L  L   +++ N+   +     + L+ L   
Sbjct: 74  NLKNLHT---LILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR-- 127

Query: 70  DLSNNRFVGKFPKLFLSLPKLKYLDLRFNEF-EGSVPSKLFD--KDLDAIFLNDNRF--- 123
            +  N        +F  L ++  ++L  N      + +  F   K L  I + D      
Sbjct: 128 -VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186

Query: 124 QFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-GML 182
             G+P +L     + L    N +      S+  +   L ++ L  ++++  +        
Sbjct: 187 PQGLPPSL-----TELHLDGNKITKVDAASLKGLNN-LAKLGLSFNSIS-AVDNGSLANT 239

Query: 183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ------LPNLQNF 236
            +L    ++ N L   +P  + + K ++ + + +N  + +  +  C         +    
Sbjct: 240 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGV 298

Query: 237 TYSFNY 242
           +   N 
Sbjct: 299 SLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 56/235 (23%), Positives = 104/235 (44%), Gaps = 17/235 (7%)

Query: 14  SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSN 73
            LRVV   DL    +   LPP+   L       + +N+   +    F+ LK L+ + L N
Sbjct: 32  HLRVVQCSDLGLEKVPKDLPPDTALL------DLQNNKITEIKDGDFKNLKNLHTLILIN 85

Query: 74  NRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENL-- 131
           N+     P  F  L KL+ L L  N+ +  +P K+  K L  + +++N     + +++  
Sbjct: 86  NKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP-KTLQELRVHENEITK-VRKSVFN 142

Query: 132 GNSPVSVLVFANNDLGGCI--PGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD 189
           G + + V+    N L       G+   M K L+ I + + N+T  +P   G+  +LT   
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKK-LSYIRIADTNITT-IPQ--GLPPSLTELH 198

Query: 190 VSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
           +  N +     +S+  + +L +L ++ N  + V   S+   P+L+    + N   
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 32/211 (15%), Positives = 62/211 (29%), Gaps = 52/211 (24%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
               L     I +   +I   +P  +     L   H++ N+   V  ++ + L  L ++ 
Sbjct: 169 GMKKLSY---IRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 71  LSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPE 129
           LS N           + P L+ L L  N+    VP  L D K +  ++L++N     I  
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGS 280

Query: 130 NLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD 189
           N                                           C P       + +   
Sbjct: 281 N-----------------------------------------DFCPPGYNTKKASYSGVS 299

Query: 190 VSFNHLQ-GSLPSSI-GNMKSLEQLNVAHNR 218
           +  N +Q   +  S    +     + + + +
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.7 bits (197), Expect = 2e-16
 Identities = 53/255 (20%), Positives = 96/255 (37%), Gaps = 35/255 (13%)

Query: 14  SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSN 73
            LRVV   DL    +   + P+   L       + +N    +    F+ L+ LY + L N
Sbjct: 34  HLRVVQCSDLGLKAVPKEISPDTTLL------DLQNNDISELRKDDFKGLQHLYALVLVN 87

Query: 74  NRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPEN--- 130
           N+      K F  L KL+ L +  N     +P  L    L  + ++DNR +  +P+    
Sbjct: 88  NKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP-SSLVELRIHDNRIRK-VPKGVFS 144

Query: 131 --------------LGNSPVSVLVFANN-----DLGGCIPGSIGK-MGKTLNEIILMNDN 170
                         L NS      F         +       I K + +TLNE+ L ++ 
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNK 204

Query: 171 LTGCLPPQI-GMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ 229
           +   +  +       L    +  N ++     S+  + +L +L++ +N+ +  +P+ +  
Sbjct: 205 IQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262

Query: 230 LPNLQNFTYSFNYFT 244
           L  LQ      N  T
Sbjct: 263 LKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.5 bits (194), Expect = 5e-16
 Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 17/206 (8%)

Query: 39  LTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN 98
           L  L   +I+ N    + P+    L  L    + +NR       +F  L  +  +++  N
Sbjct: 101 LRKLQKLYISKNHLVEIPPNLPSSLVELR---IHDNRIRKVPKGVFSGLRNMNCIEMGGN 157

Query: 99  EF-EGSVPSKLFDK-DLDAIFLNDNRF---QFGIPENLGNSPVSVLVFANNDLGGCIPGS 153
                      FD   L+ + +++ +       +PE L     + L   +N +       
Sbjct: 158 PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETL-----NELHLDHNKIQAIELED 212

Query: 154 IGKMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQL 212
           + +  K L  + L ++ +   +       L  L    +  N L   +P+ + ++K L+ +
Sbjct: 213 LLRYSK-LYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVV 269

Query: 213 NVAHNRFTGVIPSSVCQLPNLQNFTY 238
            +  N  T V  +  C +       Y
Sbjct: 270 YLHTNNITKVGVNDFCPVGFGVKRAY 295

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 42/242 (17%), Positives = 89/242 (36%), Gaps = 23/242 (9%)

Query: 10  FNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
           F  P+L     I    +++          L  +            +     + L  L  +
Sbjct: 13  FPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGL 68

Query: 70  DLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEG-SVPSKLFDKDLDAIFLNDNRFQFGIP 128
           +L +N+ +     L  +L K+  L+L  N  +  S  + L  + +  + L   +    + 
Sbjct: 69  ELKDNQ-ITDLAPL-KNLTKITELELSGNPLKNVSAIAGL--QSIKTLDLTSTQIT-DVT 123

Query: 129 --ENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLT 186
               L N  + VL    N +   I   +  +   L  + + N  ++  L P +  L  LT
Sbjct: 124 PLAGLSN--LQVLYLDLNQITN-ISP-LAGL-TNLQYLSIGNAQVSD-LTP-LANLSKLT 176

Query: 187 VFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE 246
                 N +   + S + ++ +L ++++ +N+ + V  S +    NL   T +    T +
Sbjct: 177 TLKADDNKIS-DI-SPLASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTNQTITNQ 232

Query: 247 PP 248
           P 
Sbjct: 233 PV 234

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 82.0 bits (202), Expect = 2e-16
 Identities = 79/304 (25%), Positives = 101/304 (33%), Gaps = 31/304 (10%)

Query: 271  MQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFI 330
               G G G+     G       SP        SP      P V             G   
Sbjct: 1467 TLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLG 1526

Query: 331  RPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPP 390
              SP     S    S  S    P    + P    S P     P     SP     PT P 
Sbjct: 1527 AASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSP--SYSPTSP- 1583

Query: 391  VYNVSP-SPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEY 449
              + SP SP + P  PS+   +P      ++ S  Y+P  P      P  SP  P     
Sbjct: 1584 --SYSPTSPSYSPTSPSYSPTSPSY----SATSPSYSPTSPSYSPTSPSYSPTSPS---- 1633

Query: 450  YPPPYQQHMAPPPPPGESAEVPA--PSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKK 507
            Y P    +   P  P  S   P+  P+  +YSP  P     +P +P+       Y P   
Sbjct: 1634 YSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSY---SPTSPSYSPTSPSYSPTSP 1688

Query: 508  GNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPP 567
               P +P Y   SP  S     P S  ++P S    +P SP+Y     P  PS SP +P 
Sbjct: 1689 SYSPTSPSYSPTSPSYS-----PTSPSYSPTS-PSYSPTSPSY----SPTSPSYSPTSPS 1738

Query: 568  PSPY 571
             SP 
Sbjct: 1739 YSPT 1742

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 77.0 bits (189), Expect = 1e-14
 Identities = 59/253 (23%), Positives = 77/253 (30%), Gaps = 23/253 (9%)

Query: 274  GRGGGSGGSGWGGSPAPATSPRSSPPS-SSSPPPPKRKPPVVKPVPAPRPANSPGPFIRP 332
              G              A SP     S   + P      P           +SPG    P
Sbjct: 1510 QGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSP 1569

Query: 333  --SPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPP 390
               P  P  S +SPS     +P  P+ SP    +SP SP     +   SP +       P
Sbjct: 1570 AYMPSSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSP 1625

Query: 391  VYNVSPSPKHFPPPPSHYHNTPPP--PTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVE 448
             Y  SP+   + P    Y  T P   PT  +   T  +  P    Y     S  P  P  
Sbjct: 1626 SY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-- 1681

Query: 449  YYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKG 508
                P     +P  P             +YSP  P     +P +P+       Y P    
Sbjct: 1682 -SYSPTSPSYSPTSPSYSPTSP------SYSPTSP---SYSPTSPSYSPTSPSYSPTSPS 1731

Query: 509  NPPPAPEYYHASP 521
              P +P Y   SP
Sbjct: 1732 YSPTSPSYSPTSP 1744

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 67.4 bits (164), Expect = 9e-12
 Identities = 70/263 (26%), Positives = 90/263 (34%), Gaps = 28/263 (10%)

Query: 231  PNLQNFTYSFNYFTGEPPSCTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAP 290
            P +Q  +     F        A+   G +         S M  G G  S       SP  
Sbjct: 1507 PLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYS-PSSPGY 1565

Query: 291  ATSPRSSPPSSS-SPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSH 349
            +TSP   P S S SP  P   P      P   P+ SP      SP    TS S   T   
Sbjct: 1566 STSPAYMPSSPSYSPTSPSYSPTSPSYSPTS-PSYSPT-----SPSYSATSPSYSPTSPS 1619

Query: 350  PTPPPPANSP------PKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPP 403
             +P  P+ SP      P S    P+ P   PT   SP     PT P   + SP+   + P
Sbjct: 1620 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT---SP--SYSPTSP---SYSPTSPSYSP 1671

Query: 404  PPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPP---PPVEYYPPPYQQHMAP 460
                Y  T P  +     S  Y+P  P      P  SP  P   P    Y P    +   
Sbjct: 1672 TSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1728

Query: 461  PPPPGESAEVPAPSYFAYSPPPP 483
             P    ++   +P+  +YSP  P
Sbjct: 1729 SPSYSPTSPSYSPTSPSYSPTSP 1751

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 63.6 bits (154), Expect = 1e-10
 Identities = 58/265 (21%), Positives = 79/265 (29%), Gaps = 27/265 (10%)

Query: 332  PSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPV 391
                  P    +P  RS         SP  +  SP                 L    P  
Sbjct: 1473 MGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYK 1532

Query: 392  YNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYP 451
               SP                  P+           P  P +   P   P  P     Y 
Sbjct: 1533 GVQSPGYTSPFSSAMSPGYGLTSPS---------YSPSSPGYSTSPAYMPSSP----SYS 1579

Query: 452  PPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPP 511
            P    +    P    ++   +P+  +YS   P     +P +P+       Y P      P
Sbjct: 1580 PTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSY---SPTSPSYSPTSPSYSPTSPSYSP 1636

Query: 512  PAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPY 571
             +P Y   SP  S     P S  ++P S  + +P SP+Y     P  PS SP +P  SP 
Sbjct: 1637 TSPSYSPTSPSYS-----PTSPSYSPTSPSY-SPTSPSYS----PTSPSYSPTSPSYSPT 1686

Query: 572  DNTPLPPIIGVSYASPP-PPVIPYY 595
              +  P     S  SP   P  P Y
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPTSPSY 1711

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.5 bits (189), Expect = 3e-16
 Identities = 24/190 (12%), Positives = 55/190 (28%), Gaps = 34/190 (17%)

Query: 59  TFRRLKLLYEVDLSNNRFVGKFPKL-FLS-LPKLKYLDLRFNEFEGSVPSKLFDKDLDAI 116
           T  ++  L  + L+N         L  +     +K L +                + + I
Sbjct: 39  TEAQMNSLTYITLANINVT----DLTGIEYAHNIKDLTINNIHA----------TNYNPI 84

Query: 117 FLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP 176
                         L N  +  L     D+      ++  +  +L  + + +      + 
Sbjct: 85  ------------SGLSN--LERLRIMGKDVTSDKIPNLSGL-TSLTLLDISHSAHDDSIL 129

Query: 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNF 236
            +I  L  +   D+S+N     +   +  +  L+ LN+  +         +   P L   
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQL 186

Query: 237 TYSFNYFTGE 246
                   G+
Sbjct: 187 YAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 6e-11
 Identities = 27/150 (18%), Positives = 56/150 (37%), Gaps = 14/150 (9%)

Query: 102 GSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFAN--N----DLGGC----IP 151
           G+          D + + D+ F+  +   LG S  + +  A   +     L       + 
Sbjct: 1   GAAEQTGLKASQDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLT 60

Query: 152 GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQ 211
           G I      + ++ + N + T    P I  L NL    +    +      ++  + SL  
Sbjct: 61  G-IEYA-HNIKDLTINNIHATN-YNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 212 LNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           L+++H+     I + +  LP + +   S+N
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
            + +N+     Y P  I  L++L    I               L  L  +D+S++     
Sbjct: 70  DLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127

Query: 80  FPKLFLSLPKLKYLDLRFNEFEGSVP--SKLFDKDLDAIFLNDNR 122
                 +LPK+  +DL +N     +     L   +L ++ +  + 
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPLKTL--PELKSLNIQFDG 170

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.4 bits (191), Expect = 8e-16
 Identities = 53/239 (22%), Positives = 93/239 (38%), Gaps = 17/239 (7%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR--FV 77
            I  N   +   +P  I   +      + SN+   +    F +L  L ++ LS+N   F 
Sbjct: 11  EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK 67

Query: 78  GKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQ----FGIPENLG 132
           G   +       LKYLDL FN    ++ S     + L+ +    +  +    F +  +L 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 133 NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTVFDVS 191
           N  +  L  ++        G    +   L  + +  ++      P I   L+NLT  D+S
Sbjct: 127 N--LIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 192 FNHLQGSLPSSI-GNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
              L+  L  +   ++ SL+ LN++HN F  +       L +LQ   YS N+       
Sbjct: 184 QCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 36/221 (16%)

Query: 5   CARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRL 63
           C++S F + SL+    +DL+   +   +      L  L       +    +   S F  L
Sbjct: 70  CSQSDFGTTSLKY---LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125

Query: 64  KLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLDAIFLNDN 121
           + L  +D+S+      F  +F  L  L+ L +  N F+ +    +F +  +L  + L+  
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 122 RFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-G 180
           + +  +             F +                +L  + + ++N    L      
Sbjct: 186 QLEQ-LSPT---------AFNS--------------LSSLQVLNMSHNNFFS-LDTFPYK 220

Query: 181 MLKNLTVFDVSFNHLQGSLPSSI--GNMKSLEQLNVAHNRF 219
            L +L V D S NH+  +           SL  LN+  N F
Sbjct: 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 40/208 (19%), Positives = 69/208 (33%), Gaps = 31/208 (14%)

Query: 39  LTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPK-LFLSLPKLKYLDLRF 97
            T L    ++ N     + S F  L+ L  +D  ++         +FLSL  L YLD+  
Sbjct: 77  TTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

Query: 98  NEFEGSVPSKLFDK--DLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIG 155
                   + +F+    L+ + +  N FQ     ++         F    L         
Sbjct: 136 THTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---------FTE--LRN------- 176

Query: 156 KMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNV 214
                L  + L    L   L P     L +L V ++S N+           + SL+ L+ 
Sbjct: 177 -----LTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230

Query: 215 AHNRFTGVIPSSVCQLP-NLQNFTYSFN 241
           + N         +   P +L     + N
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.6 bits (191), Expect = 9e-16
 Identities = 41/218 (18%), Positives = 71/218 (32%), Gaps = 26/218 (11%)

Query: 22  DLNHADIAGYLPPEIGRLT--DLAIFHINSNRFCGVVPSTFR----RLKLLYEVDLSNNR 75
            L + ++ G  PP +   T  DL I ++ +  +                 L  + ++   
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 76  FVGKFPKLFLSLPKLKYLDLRFNEFEG--SVPSKLFDKDLDAI---FLNDNRFQ--FGIP 128
            +    +     P L  LDL  N   G   + S L       +    L +   +   G+ 
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 129 ENLGNSPVS--VLVFANNDLGGCIPGSIGKMGKTLNEIILMN---DNLTGCLPPQIGMLK 183
             L  + V    L  ++N L              LN + L       +   LP       
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA------ 274

Query: 184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTG 221
            L+V D+S+N L    PS    +  +  L++  N F  
Sbjct: 275 KLSVLDLSYNRLD-RNPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 34/212 (16%), Positives = 64/212 (30%), Gaps = 21/212 (9%)

Query: 57  PSTFRRLKLLYEVDLSNNRFVGKFPKL---FLSLPKLKYLDLRFNEFEGSVPSKLFD--- 110
               + L L   + +   R   +        L +  L+ L L   E  G+ P  L +   
Sbjct: 62  TDIIKSLSLKR-LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120

Query: 111 KDLDAIFLNDNRFQFGIPE-----NLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEII 165
            DL+ + L +  +                 + VL  A             ++   L+ + 
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCEQVRVFPALSTLD 179

Query: 166 LMNDNLTG-------CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNR 218
           L ++   G         P +   L+ L + +       G   +       L+ L+++HN 
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239

Query: 219 FTGVIPSSVCQLP-NLQNFTYSFNYFTGEPPS 249
                 +  C  P  L +   SF      P  
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG 271

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.4 bits (167), Expect = 8e-13
 Identities = 39/214 (18%), Positives = 63/214 (29%), Gaps = 34/214 (15%)

Query: 66  LYEVDLSNNRFVGKFPK--LFLSLPKLKYLDLRFNEFEGSVP-----SKLFDKDLDAIFL 118
           L E+ L N    G  P   L  + P L  L+LR   +           +     L  + +
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 119 NDNRFQFGIPENLGNSP-VSVLVFANNDLGGCIP---GSIGKMGKTLNEIILMNDNLT-- 172
                     E +   P +S L  ++N   G              TL  + L N  +   
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 173 -GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQLNVAHNRFTGV---IPSS- 226
            G           L   D+S N L+ +  +        L  LN++      V   +P+  
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL 276

Query: 227 ---------------VCQLPNLQNFTYSFNYFTG 245
                            +LP + N +   N F  
Sbjct: 277 SVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 31/200 (15%), Positives = 62/200 (31%), Gaps = 41/200 (20%)

Query: 8   SPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCG-------VVPSTF 60
             +  P L+    + +  A    +   ++     L+   ++ N   G       + P  F
Sbjct: 144 QQWLKPGLK---VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200

Query: 61  RRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFL 118
             L++L   +       G    L  +  +L+ LDL  N    +  +   D    L+++ L
Sbjct: 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

Query: 119 NDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQ 178
           +    +  +P+ L    +SVL  + N L               +              P 
Sbjct: 261 SFTGLK-QVPKGLPAK-LSVLDLSYNRL---------------DRN------------PS 291

Query: 179 IGMLKNLTVFDVSFNHLQGS 198
              L  +    +  N    S
Sbjct: 292 PDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 5   CARSPFNSPSLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRL 63
           C+        L+    +DL+H  +            + L   +++      V      +L
Sbjct: 220 CSALAAARVQLQ---GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL 276

Query: 64  KLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGS 103
            +L   DLS NR     P     LP++  L L+ N F  S
Sbjct: 277 SVL---DLSYNRLDR-NP-SPDELPQVGNLSLKGNPFLDS 311

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.9 bits (179), Expect = 9e-14
 Identities = 44/236 (18%), Positives = 84/236 (35%), Gaps = 15/236 (6%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
            +      ++  +P  I   ++    ++  N    +   TFR L  L  + L  N     
Sbjct: 58  KVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI 114

Query: 80  FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQF---GIPENLGNS 134
               F  L  L  L+L  N     +PS  F+    L  ++L +N  +         + + 
Sbjct: 115 EVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS- 172

Query: 135 PVSVLVFA-NNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFN 193
            +  L       L     G+   +   L  + L   N+     P +  L  L   ++S N
Sbjct: 173 -LMRLDLGELKKLEYISEGAFEGLFN-LKYLNLGMCNIKD--MPNLTPLVGLEELEMSGN 228

Query: 194 HLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           H     P S   + SL++L V +++ + +  ++   L +L     + N  +  P  
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.1 bits (164), Expect = 6e-12
 Identities = 43/210 (20%), Positives = 77/210 (36%), Gaps = 12/210 (5%)

Query: 14  SLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLS 72
            L  +  + L    I   +       L  L    +  N    +    F  L  L E+ L 
Sbjct: 97  HLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155

Query: 73  NNRFVGKFPKLFLSLPKLKYLDL-RFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPE 129
           NN         F  +P L  LDL    + E  +    F+   +L  + L     +  +P 
Sbjct: 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKD-MPN 213

Query: 130 NLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQ-IGMLKNLTVF 188
                 +  L  + N      PGS   +   L ++ +MN  ++  +       L +L   
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSS-LKKLWVMNSQVSL-IERNAFDGLASLVEL 271

Query: 189 DVSFNHLQGSLPSSI-GNMKSLEQLNVAHN 217
           +++ N+L  SLP  +   ++ L +L++ HN
Sbjct: 272 NLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 31/228 (13%), Positives = 74/228 (32%), Gaps = 19/228 (8%)

Query: 40  TDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPK-LFLSLPKLKYLDLRFN 98
             +    ++ N    +  ++F RL+ L  + +             F  L  L  L L +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 99  EFEGSVPSKLFDK--DLDAIFLNDNRFQ-FGIPENL--GNSPVSVLVFANNDLGGCIPGS 153
           +F   + +  F+   +L+ + L         +  N     + + +LV  +N++    P S
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 154 IGKMGKTLNEIILMNDNLTGCLPPQI-----------GMLKNLTVFDVSFNHLQGSLPSS 202
                +  + + L  + +   +  +              L ++T+ D++   L      +
Sbjct: 149 FFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 203 IGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSC 250
                S+  L+++ N F   +                    +    S 
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS 255

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.2 bits (172), Expect = 6e-13
 Identities = 45/294 (15%), Positives = 83/294 (28%), Gaps = 62/294 (21%)

Query: 13  PSLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL 71
             L+ +  + +        +       L+ L I  ++ N+F  +    F  L  L  + L
Sbjct: 51  SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110

Query: 72  SNNRFVGKF--PKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQFGI 127
           +     G       F  L  L+ L LR N  +   P+  F        + L  N+ +  I
Sbjct: 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SI 169

Query: 128 PE----NLGNSPVSVLVFANNDLGGCIPGSIGKM-------GKTLNEIILMNDNLTGCLP 176
            E    N      ++L  ++  L       +G           ++  + L  +       
Sbjct: 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK-ESM 228

Query: 177 P------------------------------QIGMLKN----------LTVFDVSFNHLQ 196
                                                N          +   D+S + + 
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF 288

Query: 197 GSLPSSI-GNMKSLEQLNVAHNRFTGVIPSSVC-QLPNLQNFTYSFNYFTGEPP 248
            +L  S+  +   LEQL +A N     I  +    L +L     S N+      
Sbjct: 289 -ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDS 340

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 7e-11
 Identities = 39/219 (17%), Positives = 82/219 (37%), Gaps = 26/219 (11%)

Query: 38  RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLF---LSLPKLKYLD 94
           RL+ + +  +N             +   +  +DLS N F     K F   ++  K++ L 
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245

Query: 95  LRFNEFEGSVPS-------------KLFDKDLDAIFLNDNRFQF---GIPENLGNSPVSV 138
           L  +   GS                 L    +    L+ ++       +  +  +  +  
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD--LEQ 303

Query: 139 LVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTVFDVSFNHLQG 197
           L  A N++      +   +   L ++ L + N  G +  ++   L  L V D+S+NH++ 
Sbjct: 304 LTLAQNEINKIDDNAFWGLTH-LLKLNL-SQNFLGSIDSRMFENLDKLEVLDLSYNHIR- 360

Query: 198 SLPSSI-GNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQN 235
           +L       + +L++L +  N+   V      +L +LQ 
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.1 bits (138), Expect = 9e-09
 Identities = 31/198 (15%), Positives = 55/198 (27%), Gaps = 59/198 (29%)

Query: 56  VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DL 113
           +P+    +      DLS N         F  L  L++L +        + +  F     L
Sbjct: 28  LPAHVNYV------DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81

Query: 114 DAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG 173
             + L+ N+F   +             F                           + L  
Sbjct: 82  IILKLDYNQFLQ-LETG---------AF---------------------------NGLA- 103

Query: 174 CLPPQIGMLKNLTVFDVSFNHLQGS-LPSSI-GNMKSLEQLNVAHNRFTGVIPSSV-CQL 230
                     NL V  ++  +L G+ L  +    + SLE L +  N    + P+S    +
Sbjct: 104 ----------NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153

Query: 231 PNLQNFTYSFNYFTGEPP 248
                   +FN       
Sbjct: 154 RRFHVLDLTFNKVKSICE 171

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.5 bits (173), Expect = 2e-13
 Identities = 34/236 (14%), Positives = 75/236 (31%), Gaps = 18/236 (7%)

Query: 14  SLRVVASIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLS 72
               + ++ L    I   +  +    L  L    ++ N    +  S F+ L  L  ++L 
Sbjct: 74  RCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132

Query: 73  NNRFVGKFPK-LFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQFGIPE 129
            N +       LF  L KL+ L +   +    +  K F     L+ + ++ +  Q     
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEP 191

Query: 130 NL--GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-------- 179
                   VS L+         +      +  ++  + L + +L      ++        
Sbjct: 192 KSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250

Query: 180 GMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQN 235
                     ++   L   +   +  +  L +L  + N+   V      +L +LQ 
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.9 bits (161), Expect = 9e-12
 Identities = 34/225 (15%), Positives = 70/225 (31%), Gaps = 21/225 (9%)

Query: 40  TDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNE 99
             +    +++NR   +  S  +R   L  + L++N         F SL  L++LDL +N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 100 FEGSVPSKLFDK--DLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCI----PGS 153
              ++ S  F     L  + L  N ++  + E    S ++ L                  
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169

Query: 154 IGKMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQ 211
              +   L E+ +   +L     P+    ++N++   +        L         S+E 
Sbjct: 170 FAGLTF-LEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVEC 226

Query: 212 LNVAHNRFTGVIPSSVC--------QLPNLQNFTYSFNYFTGEPP 248
           L +          S +         +    +N   +         
Sbjct: 227 LELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK 271

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 37/232 (15%), Positives = 71/232 (30%), Gaps = 46/232 (19%)

Query: 38  RLTDLAIFHINSNRFCGVVPS-TFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96
            LT L I  + +      +    F  L  L E+++  +      PK   S+  + +L L 
Sbjct: 147 HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH 206

Query: 97  FNEFEGSVPSKLFDK-------DLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGC 149
             +    +     D        +L    L+   F   +     NS +    F N  +   
Sbjct: 207 MKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFS-ELSTGETNSLIKKFTFRNVKI--- 261

Query: 150 IPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSI-GNMKS 208
                              D     +   +  +  L   + S N L+ S+P  I   + S
Sbjct: 262 ------------------TDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTS 302

Query: 209 LEQLNVAHNRFTGVIPSSVC---QLPNLQNFTYSFNYFTGEPPSCTAAAGGG 257
           L+++ +  N +        C   ++  L  +    +        C   +G G
Sbjct: 303 LQKIWLHTNPWD-------CSCPRIDYLSRWLNKNSQKEQGSAKC---SGSG 344

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.7 bits (175), Expect = 2e-13
 Identities = 44/242 (18%), Positives = 79/242 (32%), Gaps = 14/242 (5%)

Query: 5   CARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLT----DLAIFHINSNRFCGVVPSTF 60
             R+P        V   DL  A +   LP    R+     D     +             
Sbjct: 286 EWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDS 345

Query: 61  RRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLND 120
              + L+  +LS  +          S  +L+ L+        ++   +  + LD +    
Sbjct: 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM--RALDPLLYEK 402

Query: 121 NRFQ-FGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI 179
              Q F   + +     + L    +           +    +  + L + +LT  L   +
Sbjct: 403 ETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY-ADVRVLHLAHKDLT-VLCH-L 459

Query: 180 GMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYS 239
             L  +T  D+S N L+ +LP ++  ++ LE L  + N    V    V  LP LQ     
Sbjct: 460 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLLC 516

Query: 240 FN 241
            N
Sbjct: 517 NN 518

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.9 bits (165), Expect = 4e-12
 Identities = 40/221 (18%), Positives = 75/221 (33%), Gaps = 15/221 (6%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
              +      L    ++  +   V+ S     K L E++  N   +     L  +L  L 
Sbjct: 341 WCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399

Query: 92  YLD---LRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGG 148
           Y       F+  +   P +    D                  +  + V VL  A+ DL  
Sbjct: 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN----SVLKMEYADVRVLHLAHKDLT- 454

Query: 149 CIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKS 208
            +   + ++   +  + L ++ L   LPP +  L+ L V   S N L+ ++   + N+  
Sbjct: 455 VLCH-LEQLLL-VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPR 509

Query: 209 LEQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSFNYFTGEPP 248
           L++L + +NR         +   P L       N    E  
Sbjct: 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 47/244 (19%), Positives = 87/244 (35%), Gaps = 18/244 (7%)

Query: 12  SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL 71
           S     V  +  N  ++   +      L +L     + N+   +  ++F+ L+ L  + L
Sbjct: 42  SNQFSKVICVRKNLREVPDGISTNTRLL-NL-----HENQIQIIKVNSFKHLRHLEILQL 95

Query: 72  SNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQF---G 126
           S N         F  L  L  L+L  N    ++P+  F     L  ++L +N  +     
Sbjct: 96  SRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSY 154

Query: 127 IPENLGNSPVSVLVFA-NNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNL 185
               + +  +  L       L     G+   +   L  + L   NL     P +  L  L
Sbjct: 155 AFNRIPS--LRRLDLGELKRLSYISEGAFEGLSN-LRYLNLAMCNLRE--IPNLTPLIKL 209

Query: 186 TVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTG 245
              D+S NHL    P S   +  L++L +  ++   +  ++   L +L     + N  T 
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269

Query: 246 EPPS 249
            P  
Sbjct: 270 LPHD 273

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 55/205 (26%), Positives = 92/205 (44%), Gaps = 16/205 (7%)

Query: 38  RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97
            L  L I  ++ N    +    F  L  L  ++L +NR        F+ L KLK L LR 
Sbjct: 86  HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145

Query: 98  NEFEGSVPSKLFD--KDLDAIFLND-NRFQFGIPEN----LGNSPVSVLVFANNDLGGCI 150
           N  E S+PS  F+    L  + L +  R  + I E     L N  +  L  A  +L   I
Sbjct: 146 NPIE-SIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLSN--LRYLNLAMCNLRE-I 200

Query: 151 PGSIGKMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTVFDVSFNHLQGSLPSSIGNMKSL 209
           P ++  + K L+E+ L  ++L+  + P     L +L    +  + +Q    ++  N++SL
Sbjct: 201 P-NLTPLIK-LDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 210 EQLNVAHNRFTGVIPSSVCQLPNLQ 234
            ++N+AHN  T +       L +L+
Sbjct: 258 VEINLAHNNLTLLPHDLFTPLHHLE 282

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 39/184 (21%), Positives = 71/184 (38%), Gaps = 10/184 (5%)

Query: 39  LTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL-RF 97
           L +L    +  NR   +    F  L  L E+ L NN         F  +P L+ LDL   
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 98  NEFEGSVPSKLFDK--DLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIG 155
                 +    F+   +L  + L     +  IP       +  L  + N L    PGS  
Sbjct: 171 KRLS-YISEGAFEGLSNLRYLNLAMCNLRE-IPNLTPLIKLDELDLSGNHLSAIRPGSFQ 228

Query: 156 KMGKTLNEIILMNDNLTGCLPPQ-IGMLKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQLN 213
            +   L ++ ++   +   +       L++L   +++ N+L   LP  +   +  LE+++
Sbjct: 229 GLMH-LQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

Query: 214 VAHN 217
           + HN
Sbjct: 286 LHHN 289

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 69.9 bits (170), Expect = 1e-12
 Identities = 32/196 (16%), Positives = 46/196 (23%), Gaps = 5/196 (2%)

Query: 395 SPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPY 454
               + +P     Y     P             PP               PP    P   
Sbjct: 3   HHKKRVYPQAQLQYGQNATPL-----QQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMG 57

Query: 455 QQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAP 514
           QQ    P       ++   +              +P A   P  PV+   P +    P  
Sbjct: 58  QQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117

Query: 515 EYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNT 574
              +  P  +    + P +   P     + PP     +   PP   P      PS   N 
Sbjct: 118 APAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNA 177

Query: 575 PLPPIIGVSYASPPPP 590
               I     A P   
Sbjct: 178 SPDYIRSTLNAVPKNS 193

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 68.7 bits (167), Expect = 3e-12
 Identities = 33/233 (14%), Positives = 43/233 (18%), Gaps = 11/233 (4%)

Query: 342 SSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHF 401
           S    R +P               P    PP               PP     S   + F
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQF 61

Query: 402 PPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPP 461
             P     +           +T            V   +   P        P QQ   P 
Sbjct: 62  LTPAQEQLHQQIDQ-----ATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPM 116

Query: 462 PPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASP 521
             P       A              D     P          PP     PP      +  
Sbjct: 117 AAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPP--LVIPPERMLVPSEL 174

Query: 522 PPSGCDIIPPSHHHNPPSWHHQT----PPSPNYHSYAVPPPPSPSPPTPPPSP 570
             +  D I  + +  P +         P       Y         PP      
Sbjct: 175 SNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGL 227

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 64.1 bits (155), Expect = 8e-11
 Identities = 20/167 (11%), Positives = 36/167 (21%)

Query: 323 ANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRT 382
             +   + + + P    ++  P                    + PS            + 
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 383 HLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPP 442
           H                + P    + +  P  P +  +P      P     Y  P  +  
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129

Query: 443 PPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDEN 489
                     P       PPP  +    P P          P+   N
Sbjct: 130 QNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSN 176

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 61.0 bits (147), Expect = 8e-10
 Identities = 23/171 (13%), Positives = 37/171 (21%), Gaps = 7/171 (4%)

Query: 294 PRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPP 353
            +   P +          P+ +P     P +     +       P   + PS        
Sbjct: 5   KKRVYPQAQLQYGQNA-TPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT 63

Query: 354 PPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPP 413
           P      +      +       H      ++P   P  Y     P     P         
Sbjct: 64  PAQEQLHQQIDQATTSMNDMHLH------NVPLVDPNAYMQPQVPVQMGTPLQQQQQPMA 117

Query: 414 PPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPP 464
            P      +       P    Y        PPP+     P    + PP   
Sbjct: 118 APAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERM 168

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 59.1 bits (142), Expect = 3e-09
 Identities = 28/159 (17%), Positives = 36/159 (22%), Gaps = 2/159 (1%)

Query: 439 QSPPPPPPVEYYPPPYQQ--HMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATP 496
             P           P QQ     PP  P  +               P    +  + PA  
Sbjct: 8   VYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQE 67

Query: 497 GAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVP 556
               +                    P +      P     P     Q   +P Y   +  
Sbjct: 68  QLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAA 127

Query: 557 PPPSPSPPTPPPSPYDNTPLPPIIGVSYASPPPPVIPYY 595
              +  P          T LPP I      PPP VIP  
Sbjct: 128 MGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPE 166

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 58.7 bits (141), Expect = 4e-09
 Identities = 31/215 (14%), Positives = 47/215 (21%), Gaps = 3/215 (1%)

Query: 285 GGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSP 344
           G +  P   P    P             +  P     P+     F+ P+           
Sbjct: 17  GQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQA 76

Query: 345 STRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPP 404
           +T          ++ P    +    P  P       +    P   P Y    +       
Sbjct: 77  TT---SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMR 133

Query: 405 PSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPP 464
           P +        T+   P T    PPPP      +   P                A P   
Sbjct: 134 PMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNS 193

Query: 465 GESAEVPAPSYFAYSPPPPPARDENPVAPATPGAP 499
               +   P      P      D +P      G  
Sbjct: 194 SLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDGLI 228

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 25/158 (15%), Positives = 40/158 (25%), Gaps = 4/158 (2%)

Query: 278 GSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPP 337
            + G  +G    P      S        P + +             +     +    P  
Sbjct: 36  AAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNA 95

Query: 338 PTSKSSPSTRSHPTPP--PPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVS 395
                 P     P      P  +P     S        P ++  P   L   PPP+ +++
Sbjct: 96  YMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLT 155

Query: 396 --PSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPP 431
             P P   PP      +     +     ST  A P   
Sbjct: 156 LPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNS 193

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 42/282 (14%), Positives = 77/282 (27%), Gaps = 76/282 (26%)

Query: 14  SLRVVASIDLNHADI----AGYLPPEIGRLTDLAIFHINSNRF----CGVVPSTFRRLKL 65
           S+       L    I       +   +     +    ++ N         +       K 
Sbjct: 5   SIE---GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61

Query: 66  LYEVDLSNN---RFVGKFPKLFLSL-------PKLKYLDLRFNEF--EG--------SVP 105
           L   + S+    R   + P+    L       PKL  + L  N F            S  
Sbjct: 62  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 106 SKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEII 165
           + L  + L    L++N         LG    + +  A   L         K    L  II
Sbjct: 122 TPL--EHLY---LHNN--------GLGPQAGAKIARA---LQELAVNKKAKNAPPLRSII 165

Query: 166 LMNDNLTGCLPPQIG---------MLK---NLTVFDVSFNHL-----QGSLPSSIGNMKS 208
               N       ++            +    L    +  N +     +  L   +   + 
Sbjct: 166 C-GRN-------RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217

Query: 209 LEQLNVAHNRFT--GV--IPSSVCQLPNLQNFTYSFNYFTGE 246
           L+ L++  N FT  G   +  ++   PNL+    +    +  
Sbjct: 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 59.7 bits (145), Expect = 9e-10
 Identities = 44/241 (18%), Positives = 68/241 (28%), Gaps = 75/241 (31%)

Query: 11  NSPSLRVVASIDLNH--------ADIAGYLP-----PEIGRLTDLAIFHINSNRFC--GV 55
               L     + L++        A IA  L       +      L       NR     +
Sbjct: 120 KHTPLE---HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 56  VP--STFRRLKLLYEVDLSNNRF-----VGKFPKLFLSLPKLKYLDLRFNEF--EGSVPS 106
                TF+  +LL+ V +  N            +      +LK LDL+ N F   GS   
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS--- 233

Query: 107 KLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLG--GCIPGSIGKMGKTLNEI 164
                 L AI L           NL       L   +  L   G    ++          
Sbjct: 234 ----SAL-AIALKSWP-------NL-----RELGLNDCLLSARGAA--AVVDA------- 267

Query: 165 ILMNDNLTGCLPPQIGMLKNLTVFDVSFNHL--QG--SLPSSIG-NMKSLEQLNVAHNRF 219
               +N+             L    + +N +      +L + I   M  L  L +  NRF
Sbjct: 268 FSKLENIG------------LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

Query: 220 T 220
           +
Sbjct: 316 S 316

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 33/216 (15%), Positives = 79/216 (36%), Gaps = 23/216 (10%)

Query: 38  RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97
              +    ++        V      L  + ++  +N+  +     +   LP +  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-IKSVQGIQ-YLPNVTKLFLNG 77

Query: 98  NEFEG-SVPSKLFDKDLDAIFLNDNRFQFGIP--ENLGNSP-VSVLVFANNDLGGCIPGS 153
           N+       + L  K+L  +FL++N+    +    +L +   +  L   +N +   I G 
Sbjct: 78  NKLTDIKPLANL--KNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNGIS-DING- 129

Query: 154 IGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLN 213
           +  + + L  + L N+ +T  +   +  L  L    +  N +   +   +  +  L+ L 
Sbjct: 130 LVHLPQ-LESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLY 184

Query: 214 VAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           ++ N  + +   ++  L NL            +P +
Sbjct: 185 LSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 48/221 (21%), Positives = 73/221 (33%), Gaps = 32/221 (14%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
           +P  I          ++ NR   V  ++FR  + L  + L +N         F  L  L+
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 92  YLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGC 149
            LDL  N    SV    F     L  + L+    Q  +            +F    L   
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPG---------LFRG--L--- 128

Query: 150 IPGSIGKMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTVFDVSFNHLQGSLPSSI-GNMK 207
                      L  + L ++ L   LP      L NLT   +  N +  S+P      + 
Sbjct: 129 ---------AALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLH 177

Query: 208 SLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248
           SL++L +  NR   V P +   L  L       N  +  P 
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 22  DLNHADIAGYLPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKF 80
            L+   I+  +P      L  L    ++ NR   V P  FR L  L  + L  N      
Sbjct: 159 FLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 81  PKLFLSLPKLKYLDLRFN 98
            +    L  L+YL L  N
Sbjct: 218 TEALAPLRALQYLRLNDN 235

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 40/238 (16%), Positives = 85/238 (35%), Gaps = 40/238 (16%)

Query: 14  SLRVVASIDLNHADIAGYLPPEIG---RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
           S   + S+ + H     +L  +        ++ I  ++ +    +             ++
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLN 359

Query: 71  LSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-----KDLDAIFLNDNRFQF 125
            + N F     +   +L +L+ L L+ N  + +   K+         L+ + ++ N    
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFF-KVALMTKNMSSLETLDVSLNSLNS 417

Query: 126 GIPENLGNSPVS--VLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLK 183
              +       S  VL  ++N L                       ++  CLPP      
Sbjct: 418 HAYDRTCAWAESILVLNLSSNML---------------------TGSVFRCLPP------ 450

Query: 184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
            + V D+  N +  S+P  + ++++L++LNVA N+   V      +L +LQ      N
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 35/219 (15%), Positives = 63/219 (28%), Gaps = 26/219 (11%)

Query: 39  LTDLAIFHINSNRFCGVVPSTF-----RRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL 93
              +   +I +      +           LK L    + N  F+     L+    ++   
Sbjct: 275 PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334

Query: 94  DLRFNE---FEGSVPSKLFDKDLDAIFLNDNRFQ---FGIPENLGNSPVSVLVFANNDLG 147
            L  ++        P          +    N F    F     L    +  L+   N L 
Sbjct: 335 MLSISDTPFIHMVCPPSP--SSFTFLNFTQNVFTDSVFQGCSTLKR--LQTLILQRNGLK 390

Query: 148 GCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-----GMLKNLTVFDVSFNHLQGSLPSS 202
                         +   L  D     L            +++ V ++S N L GS+   
Sbjct: 391 N-FFKVALMTKNMSSLETL--DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447

Query: 203 IGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           +     ++ L++ +NR    IP  V  L  LQ    + N
Sbjct: 448 LP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.4 bits (149), Expect = 5e-10
 Identities = 47/249 (18%), Positives = 89/249 (35%), Gaps = 33/249 (13%)

Query: 22  DLNHADIAGYLPP-EIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFV--- 77
            L+   I+  L   +I  L++L +  ++ NR   +    F   + L  +D+S+NR     
Sbjct: 58  SLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116

Query: 78  -GKFPKL------------------FLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFL 118
                 L                  F +L KL +L L   +F       +    L  I L
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILL 176

Query: 119 N--DNRFQFGIPENLGNSPVSVL--VFANNDLGGCIPGSIGKM--GKTLNEIILMNDNLT 172
           +      + G  E+L     +VL  VF  N L                L+ I L ++N  
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236

Query: 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPN 232
             +     + +  T+ +V+  H++ +   S+   +      V +     +   ++ +  +
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL---TITERID 293

Query: 233 LQNFTYSFN 241
            + FTYS  
Sbjct: 294 REEFTYSET 302

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 30/215 (13%), Positives = 59/215 (27%), Gaps = 17/215 (7%)

Query: 46  HINSNRFCGVVPSTFRRLKL--LYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGS 103
            + S    G    + +      L+ V   N+ F  +      +L  L+  +++ N+    
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236

Query: 104 VPSKLFDK----------DLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGS 153
                  +           L  I          + +     PV  L   N  +   I   
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCS-VKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 154 IGKMGKT-LNEIILMNDNLTGCLPPQIGM---LKNLTVFDVSFNHLQGSLPSSIGNMKSL 209
                +T L  +++ +      L  +  +      + +  +S +           +  S 
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

Query: 210 EQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT 244
             LN   N FT  +      L  LQ      N   
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 37/224 (16%), Positives = 77/224 (34%), Gaps = 20/224 (8%)

Query: 33  PPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92
           P ++          ++ N    +       L  L  + LS+NR       +FL    L+Y
Sbjct: 47  PKDL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104

Query: 93  LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPE-----NLGNSPVSVLVFANNDLG 147
           LD+  N  + ++        L  + L+ N F   +P      NL    ++ L  +     
Sbjct: 105 LDVSHNRLQ-NISCCPMAS-LRHLDLSFNDFD-VLPVCKEFGNLTK--LTFLGLSAAKFR 159

Query: 148 GCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMK 207
                 +  +  +   + L++ ++ G    +   + N TV  + F+           ++ 
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGG-ETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 208 SLEQLNVAHNRFTGV-------IPSSVCQLPNLQNFTYSFNYFT 244
           +L  L +++ +             S + + P L N T      T
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.3 bits (144), Expect = 6e-10
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 26/191 (13%)

Query: 63  LKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVP--SKLFDKDLDAIFLND 120
           L    + +L     V         L  ++  +   +  + S+         +L  + L+ 
Sbjct: 18  LANAVKQNLGKQS-VTDLVSQK-ELSGVQNFNGDNSNIQ-SLAGMQFF--TNLKELHLSH 72

Query: 121 NRFQFGIP--ENLGNSP-VSVLVFANNDLGGCIPGSI-GKMGKTLNEIILMNDNLTGCLP 176
           N+    I     L +   +  L    N L      ++ G     L+ + L N+ L     
Sbjct: 73  NQ----ISDLSPLKDLTKLEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELRDTDS 123

Query: 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNF 236
             +  LKNL +  +  N L+ S+   +G +  LE L++  N  T      + +L  +   
Sbjct: 124 --LIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWI 177

Query: 237 TYSFNYFTGEP 247
             +      EP
Sbjct: 178 DLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 34/219 (15%), Positives = 71/219 (32%), Gaps = 69/219 (31%)

Query: 20  SIDLNH---ADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRF 76
           + + ++     +AG     +   T+L   H++ N+   +  S  + L  L E+ ++ NR 
Sbjct: 45  NFNGDNSNIQSLAG-----MQFFTNLKELHLSHNQISDL--SPLKDLTKLEELSVNRNR- 96

Query: 77  VGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPV 136
           +       +    L  L L  NE           +D D++             +L N   
Sbjct: 97  LKNLN--GIPSACLSRLFLDNNEL----------RDTDSL------------IHLKN--- 129

Query: 137 SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQ 196
                                   L  + + N+ L   +   +G L  L V D+  N + 
Sbjct: 130 ------------------------LEILSIRNNKLKS-IVM-LGFLSKLEVLDLHGNEIT 163

Query: 197 GSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQN 235
            +    +  +K +  +++   +    +   V   P L  
Sbjct: 164 -NT-GGLTRLKKVNWIDLTGQK---CVNEPVKYQPELYI 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 41/188 (21%), Positives = 71/188 (37%), Gaps = 19/188 (10%)

Query: 39  LTDLAIFHINSNRFCGVVPS-TFRRLKLLYEVDLSNNRFVGKFPK-LFLSLPKLKYLDLR 96
           L +++  +++ +     + S +F  L  +  +++ N R +          LP LK+L + 
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 97  FNEFEGSVPSKLFDKDLDAIF---LNDNRFQFGIPEN----LGNSPVSVLVFANNDLGGC 149
               +   P        D  F   + DN +   IP N    L N     L   NN     
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-TLTLKLYNNGFTS- 170

Query: 150 IPGSIGKMGKTLNEIILM-NDNLTGCLPPQI--GMLKNLTVFDVSFNHLQGSLPSSI-GN 205
           + G     G  L+ + L  N  LT  +      G+    ++ DVS   +  +LPS    +
Sbjct: 171 VQGYAFN-GTKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEH 227

Query: 206 MKSLEQLN 213
           +K L   N
Sbjct: 228 LKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 27/211 (12%), Positives = 63/211 (29%), Gaps = 15/211 (7%)

Query: 34  PEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFP-KLFLSLPKLKY 92
           P +          +       +    F  L  +  + +S +  + +     F +L K+ +
Sbjct: 27  PSL--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTH 84

Query: 93  LDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQFGIPENL---GNSPVSVLVFANNDLG 147
           +++R       +      +   L  + + +   +   P+           +L   +N   
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYM 143

Query: 148 GCIP-GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSI--G 204
             IP  +   +      + L N+  T  +         L    ++ N     +      G
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG 202

Query: 205 NMKSLEQLNVAHNRFTGVIPSSVCQ-LPNLQ 234
                  L+V+    T  +PS   + L  L 
Sbjct: 203 VYSGPSLLDVSQTSVT-ALPSKGLEHLKELI 232

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 29/181 (16%), Positives = 54/181 (29%), Gaps = 16/181 (8%)

Query: 56  VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--KDL 113
           +PS     + L    L            F +LP +  + +  +     + S  F     +
Sbjct: 26  IPSLPPSTQTL---KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82

Query: 114 DAIFLNDNRFQFGIP----ENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMND 169
             I + + R    I     + L    +  L   N  L    P         +  I+ + D
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPL--LKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITD 139

Query: 170 NLT-GCLPPQI--GMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSS 226
           N     +P     G+        +  N    S+     N   L+ + +  N++  VI   
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

Query: 227 V 227
            
Sbjct: 199 A 199

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 33/232 (14%), Positives = 76/232 (32%), Gaps = 19/232 (8%)

Query: 12  SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL 71
             S RV    +    +I   LP     L           +   +    F     L ++++
Sbjct: 8   HCSNRVFLCQESKVTEIPSDLPRNAIEL------RFVLTKLRVIQKGAFSGFGDLEKIEI 61

Query: 72  SNNRFVGKFPK-LFLSLPKLKYLDL-RFNEFEGSVPSKLFDK--DLDAIFLNDNRFQFGI 127
           S N  +      +F +LPKL  + + + N     +  + F    +L  + +++   +  +
Sbjct: 62  SQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKH-L 119

Query: 128 PEN--LGNSPVSVLVFANNDLGGCIP-GSIGKMGKTLNEIILMNDNLTGCLPPQI-GMLK 183
           P+   + +    +L   +N     I   S   +      + L  + +   +        +
Sbjct: 120 PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQ 178

Query: 184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ-LPNLQ 234
              +     N+L+               L+++  R    +PS   + L  L+
Sbjct: 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLR 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 59.7 bits (144), Expect = 1e-09
 Identities = 27/189 (14%), Positives = 64/189 (33%), Gaps = 23/189 (12%)

Query: 58  STFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD----KDL 113
                     + +L     V         L  +  +    ++        +       ++
Sbjct: 15  FPDDAFAETIKDNLKKKS-VTDAVTQ-NELNSIDQIIANNSDI-----KSVQGIQYLPNV 67

Query: 114 DAIFLNDNRFQFGIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT 172
             +FLN N+    I + L N   +  L    N +   +   +  + K L  + L ++ ++
Sbjct: 68  TKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKI-KDLSS-LKDL-KKLKSLSLEHNGIS 122

Query: 173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPN 232
             +   +  L  L    +  N +  +  + +  +  L+ L++  N+ + +    +  L  
Sbjct: 123 -DING-LVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDI--VPLAGLTK 176

Query: 233 LQNFTYSFN 241
           LQN   S N
Sbjct: 177 LQNLYLSKN 185

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.3 bits (130), Expect = 7e-08
 Identities = 42/225 (18%), Positives = 78/225 (34%), Gaps = 21/225 (9%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
            I  N++DI   +   I  L ++    +N N+   + P     LK L  + L  N+ +  
Sbjct: 47  QIIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-IKD 101

Query: 80  FPKLFLSLPKLKYLDLRFNEFEGSVP--SKLFDKDLDAIFLNDNRFQFGIPENLGNSP-V 136
              L   L KLK L L  N     +     L    L++++L +N+        L     +
Sbjct: 102 LSSLK-DLKKLKSLSLEHNGIS-DINGLVHL--PQLESLYLGNNKIT--DITVLSRLTKL 155

Query: 137 SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQ 196
             L   +N +   I   +  + K L  + L + N    L   +  LKNL V ++      
Sbjct: 156 DTLSLEDNQISD-IVP-LAGLTK-LQNLYL-SKNHISDLRA-LAGLKNLDVLELFSQECL 210

Query: 197 GSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
               +   N+     +           P  +    + +     ++
Sbjct: 211 NKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.5 bits (107), Expect = 4e-05
 Identities = 10/81 (12%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 161 LNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFT 220
           + E I ++  +    P            ++    +      +   + S++Q+   ++   
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK 56

Query: 221 GVIPSSVCQLPNLQNFTYSFN 241
            V    +  LPN+     + N
Sbjct: 57  SV--QGIQYLPNVTKLFLNGN 75

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 40/185 (21%), Positives = 79/185 (42%), Gaps = 13/185 (7%)

Query: 40  TDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNE 99
            D     + SN+   +    F RL  L  + L++N+       +F  L  L+ L +  N+
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 100 FEGSVPSKLFDK--DLDAIFLNDNRFQF---GIPENLGNSPVSVLVFANNDLGGCIPGSI 154
            + ++P  +FD+  +L  + L+ N+ +     + ++L    ++ L    N+L     G  
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK--LTYLSLGYNELQSLPKGVF 153

Query: 155 GKMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQL 212
            K+   L E+ L N+ L   +P      L  L    +  N L+  +P     +++ L+ L
Sbjct: 154 DKLTS-LKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKML 210

Query: 213 NVAHN 217
            +  N
Sbjct: 211 QLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 43/192 (22%), Positives = 82/192 (42%), Gaps = 17/192 (8%)

Query: 56  VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DL 113
           +P+  ++L      DL +N+      K F  L KL+ L L  N+ + ++P+ +F +  +L
Sbjct: 35  IPADTKKL------DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNL 87

Query: 114 DAIFLNDNRFQFGIPENLGNSPVS--VLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL 171
           + +++ DN+ Q  +P  + +  V+   L    N L    P     + K L  + L  + L
Sbjct: 88  ETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-LTYLSLGYNEL 145

Query: 172 TGCLPPQI-GMLKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQLNVAHNRFTGVIPSSVCQ 229
              LP  +   L +L    +  N L+  +P      +  L+ L + +N+   V   +   
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 230 LPNLQNFTYSFN 241
           L  L+      N
Sbjct: 204 LEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 4/93 (4%)

Query: 32  LPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90
           LPP +   LT L    +  N    +    F +L  L E+ L NN+        F  L +L
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTEL 183

Query: 91  KYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDN 121
           K L L  N+ +  VP   FD  + L  + L +N
Sbjct: 184 KTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 32  LPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90
           LP  +  +L +LA   ++ N+   + P  F  L  L  + L  N        +F  L  L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159

Query: 91  KYLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQFGIPEN 130
           K L L  N+ +  VP   FDK  +L  + L++N+ +  +PE 
Sbjct: 160 KELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEG 199

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 34/210 (16%), Positives = 65/210 (30%), Gaps = 23/210 (10%)

Query: 40  TDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNE 99
                  ++ N    +   +F     L  +DLS           + SL  L  L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 100 FEGSVPSKLFDK--DLDAIFLNDNRFQ------FGIPENLGNSPVSVLVFANNDLGGCI- 150
            + S+    F     L  +   +           G  + L       L  A+N +     
Sbjct: 88  IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL-----KELNVAHNLIQSFKL 141

Query: 151 PGSIGKMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTVF----DVSFNHLQGSLPSSIGN 205
           P     +   L  + L ++ +   +      +L  + +     D+S N +   +      
Sbjct: 142 PEYFSNLTN-LEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198

Query: 206 MKSLEQLNVAHNRFTGVIPSSVCQLPNLQN 235
              L++L +  N+   V      +L +LQ 
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQK 228

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 46/192 (23%)

Query: 57  PSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLD 114
           P + + L      DLS N         F S P+L+ LDL   E + ++    +     L 
Sbjct: 27  PFSTKNL------DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLS 79

Query: 115 AIFLNDNRFQF---GIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL 171
            + L  N  Q    G    L +                           L +++ +  NL
Sbjct: 80  TLILTGNPIQSLALGAFSGLSS---------------------------LQKLVAVETNL 112

Query: 172 TGCLPPQI-GMLKNLTVFDVSFNHLQGSLPSSIG---NMKSLEQLNVAHNRFTGVIPSSV 227
              L     G LK L   +V+ N +Q S         N+ +LE L+++ N+   +  + +
Sbjct: 113 A-SLENFPIGHLKTLKELNVAHNLIQ-SFKLP-EYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 228 CQLPNLQNFTYS 239
             L  +     S
Sbjct: 170 RVLHQMPLLNLS 181

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 30/184 (16%), Positives = 59/184 (32%), Gaps = 27/184 (14%)

Query: 38  RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97
            L+ L+   +  N    +    F  L  L ++                 L  LK L++  
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 98  NEFEGSVPS-KLFDK--DLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSI 154
           N  + S    + F    +L+ + L+ N+ Q  I                          +
Sbjct: 134 NLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQS-IYCT---------DLRV----------L 172

Query: 155 GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQLN 213
            +M      + L  + +   + P       L    +  N L+ S+P  I   + SL+++ 
Sbjct: 173 HQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIW 230

Query: 214 VAHN 217
           +  N
Sbjct: 231 LHTN 234

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 58.0 bits (139), Expect = 6e-09
 Identities = 14/183 (7%), Positives = 32/183 (17%), Gaps = 2/183 (1%)

Query: 287 SPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPST 346
           +  P  S  ++   S        +          R           +     +  S+ + 
Sbjct: 24  TAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAA 83

Query: 347 RSHPTPPPPANSPPKSFHSPPSPPPPPPTH--KESPRTHLPPTPPPVYNVSPSPKHFPPP 404
            +       A  P +      +  P        +      P          P+ +     
Sbjct: 84  TTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTE 143

Query: 405 PSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPP 464
                + P    K   P             + P                 ++        
Sbjct: 144 KEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEK 203

Query: 465 GES 467
              
Sbjct: 204 ASK 206

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 58.0 bits (139), Expect = 6e-09
 Identities = 15/197 (7%), Positives = 44/197 (22%)

Query: 286 GSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPS 345
           G+     S  S   ++ +    + +      +       +      P+     T++++ +
Sbjct: 31  GANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEA 90

Query: 346 TRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPP 405
             +       +    ++  +   P     T  +   T+      P    + + K   P  
Sbjct: 91  ASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDV 150

Query: 406 SHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPG 465
                    P +    S        P        +                  A      
Sbjct: 151 PKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKV 210

Query: 466 ESAEVPAPSYFAYSPPP 482
           ++          ++   
Sbjct: 211 QALSNTNSKAKDHASVG 227

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 57.3 bits (137), Expect = 1e-08
 Identities = 23/251 (9%), Positives = 47/251 (18%), Gaps = 15/251 (5%)

Query: 298 PPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPAN 357
              ++ P        +V                          + +   +          
Sbjct: 21  GEETAVPENSGANTELVSGESEHST---------NEADKQNEGEHARENKLEKAEGVATA 71

Query: 358 SPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTK 417
           S   S  S  +          + +     +       S   K      +           
Sbjct: 72  SETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGD 131

Query: 418 KASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFA 477
           ++ P+             VPK +     P E     +++ +   P   E   +   S   
Sbjct: 132 ESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVL 191

Query: 478 YSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNP 537
            S       +E     A   A        K +                       +  + 
Sbjct: 192 ASRRTGHLVNEKASKEAKVQALSNTNSKAKDHA------SVGGEEFKAYAFDYWQYLDSM 245

Query: 538 PSWHHQTPPSP 548
             W    P   
Sbjct: 246 VFWEGLVPTPD 256

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 52.3 bits (124), Expect = 4e-07
 Identities = 14/216 (6%), Positives = 24/216 (11%), Gaps = 22/216 (10%)

Query: 362 SFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASP 421
            F    +  P               T         S           H       K    
Sbjct: 18  YFQGEETAVPENSG---------ANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGV 68

Query: 422 STHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPP 481
           +T      P         +              +          E+    A         
Sbjct: 69  ATASETASP-------ASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKP----KSD 117

Query: 482 PPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWH 541
                            P       +    P                           W 
Sbjct: 118 KETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEE--LLKWE 175

Query: 542 HQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLP 577
                    +  +V      +             + 
Sbjct: 176 PGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQ 211

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 51.5 bits (122), Expect = 6e-07
 Identities = 18/220 (8%), Positives = 34/220 (15%), Gaps = 10/220 (4%)

Query: 332 PSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPV 391
                 P +  + +                   +           +E+            
Sbjct: 21  GEETAVPENSGANTELVSGESEHST--------NEADKQNEGEHARENKLEKAEGVATAS 72

Query: 392 YNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYP 451
              SP+        +    +   P +KAS     A  P         +     P      
Sbjct: 73  ETASPASNEAATTETAEAASAAKPEEKASEVV--AETPSAEAKPKSDKETEAKPEATNQG 130

Query: 452 PPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPP 511
              +          E       +      P     +             E     +G+  
Sbjct: 131 DESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVV 190

Query: 512 PAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYH 551
            A                      N  S            
Sbjct: 191 LASRRTGHLVNEKASKEAKVQALSNTNSKAKDHASVGGEE 230

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 51.1 bits (121), Expect = 8e-07
 Identities = 21/235 (8%), Positives = 44/235 (18%), Gaps = 28/235 (11%)

Query: 340 SKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPK 399
              +   +   T  P  +       S  S        K++   H                
Sbjct: 13  QLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLE--------- 63

Query: 400 HFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMA 459
                           ++ ASP+++ A           + +    P  +      +   A
Sbjct: 64  --KAEG------VATASETASPASNEAATTET-----AEAASAAKPEEKASEVVAETPSA 110

Query: 460 PPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHA 519
              P  +      P          PA + N           +               +  
Sbjct: 111 EAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEE 170

Query: 520 SPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNT 574
                      P    +          +     + V    S        S  ++ 
Sbjct: 171 LLKWE------PGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALSNTNSK 219

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 44.2 bits (103), Expect = 1e-04
 Identities = 19/184 (10%), Positives = 32/184 (17%), Gaps = 11/184 (5%)

Query: 411 TPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEV 470
           T  P    A+                   +         +    +   A           
Sbjct: 24  TAVPENSGANTELVSGESEHS-------TNEADKQNEGEHARENKLEKAEGVATASETAS 76

Query: 471 PAPSYFAYSPPPPPARDENPVAPATPGAP----VEYYPPKKGNPPPAPEYYHASPPPSGC 526
           PA +  A +     A    P   A+         E  P         PE  +        
Sbjct: 77  PASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPA 136

Query: 527 DIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPPPSPSPPTPPPSPYDNTPLPPIIGVSYAS 586
                +     P     T  +                  P     D      ++  S  +
Sbjct: 137 AEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRT 196

Query: 587 PPPP 590
               
Sbjct: 197 GHLV 200

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 38  RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97
           +L  L   + ++N+   +    F     + E+ L++NR      K+F  L  LK L LR 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114

Query: 98  NEFEGSVPSKLFDK--DLDAIFLNDNRFQ 124
           N     V +  F     +  + L DN+  
Sbjct: 115 NRIT-CVGNDSFIGLSSVRLLSLYDNQIT 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 5/93 (5%)

Query: 40  TDLAIFHINSNRFCGVVPS-TFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN 98
              A   +N+N F  +  +  F++L  L +++ SNN+        F     +  + L  N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 99  EFEGSVPSKLFDK--DLDAIFLNDNRFQFGIPE 129
             E +V  K+F     L  + L  NR    +  
Sbjct: 92  RLE-NVQHKMFKGLESLKTLMLRSNRITC-VGN 122

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 39/276 (14%), Positives = 83/276 (30%), Gaps = 95/276 (34%)

Query: 11  NSPSLRVVASIDLNH--------ADIAGYLPPEIGRLTDLAIFHINSNRF--------CG 54
              S+    S++L+          ++   L      +T L   +++ N            
Sbjct: 49  TPASVT---SLNLSGNSLGFKNSDELVQILAAIPANVTSL---NLSGNFLSYKSSDELVK 102

Query: 55  VVPSTFRRLKLLYEVDLSNNRF----VGKFPKLFLSLPK-LKYLDLRFNEF--EG----- 102
            + +    + +L   DL  N F      +F + F +LP  +  L+LR N+   +      
Sbjct: 103 TLAAIPFTITVL---DLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159

Query: 103 ----SVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFA---NN------DLGGC 149
               ++P+ +    L+   L  N        NL +   + L              DL   
Sbjct: 160 QILAAIPANV--NSLN---LRGN--------NLASKNCAELAKFLASIPASVTSLDLSAN 206

Query: 150 IPGSIGKMG-KTLNEIILMND------NLTGCLPPQIG------------MLKNLTVFDV 190
               +G      L  I           NL       +              LK+L    +
Sbjct: 207 ---LLGLKSYAELAYIFSSIPNHVVSLNLCLN---CLHGPSLENLKLLKDSLKHLQTVYL 260

Query: 191 SFNHLQG-------SLPSSIGNMKSLEQLNVAHNRF 219
            ++ ++        +L ++  N++ +  ++      
Sbjct: 261 DYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 6/126 (4%)

Query: 307 PKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSP 366
                     VP       P   +  +      +   P T   P PPPP           
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAA------ 58

Query: 367 PSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYA 426
            +PP          R    PT P   +++P+ ++   P      + PP   +A P  ++ 
Sbjct: 59  GNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118

Query: 427 PPPPPR 432
           P P P 
Sbjct: 119 PVPEPD 124

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 55.5 bits (133), Expect = 3e-08
 Identities = 24/128 (18%), Positives = 34/128 (26%), Gaps = 7/128 (5%)

Query: 292 TSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPT 351
           +S      SS   P            P+    ++   F+    PP      +P     P 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVI-----PSASVTSAASDFLAALHPPVTVPDPAPPPPPAPA 57

Query: 352 PPPPANSPPKSFHSPPSPPPP--PPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYH 409
              P ++             P  P T   +P       P P    S  P      P  YH
Sbjct: 58  AGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYH 117

Query: 410 NTPPPPTK 417
           +  P P  
Sbjct: 118 HPVPEPDP 125

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 23/114 (20%), Positives = 30/114 (26%), Gaps = 1/114 (0%)

Query: 287 SPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPST 346
              P  S    P +S +         +  PV  P PA  P P      PP   +  S   
Sbjct: 13  GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQ 72

Query: 347 RSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKH 400
           R    P  P  +           P P       P       P   ++  P P  
Sbjct: 73  RILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAG-RAVPGLYHHPVPEPDP 125

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 50.5 bits (120), Expect = 9e-07
 Identities = 22/155 (14%), Positives = 37/155 (23%), Gaps = 9/155 (5%)

Query: 332 PSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPV 391
                    + S       +    A+    + H P + P P P    +P       PP  
Sbjct: 8   HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPA---AGNPPDT 64

Query: 392 YNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYP 451
                  +     P+       P T   +P+  Y   P P        +     P  Y+ 
Sbjct: 65  VTGDSVLQRILRGPTG------PGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHH 118

Query: 452 PPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPAR 486
           P  +             +  A       P     +
Sbjct: 119 PVPEPDPVRVEEVSRRIKRWAEDEVQLYPEEWEGQ 153

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 48.6 bits (115), Expect = 4e-06
 Identities = 20/120 (16%), Positives = 28/120 (23%), Gaps = 1/120 (0%)

Query: 404 PPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPP 463
              H+H++   P          +       +      PP   P    PPP       PP 
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALH-PPVTVPDPAPPPPPAPAAGNPPD 63

Query: 464 PGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPP 523
                 V        + P   +          PG       P          Y+H  P P
Sbjct: 64  TVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEP 123

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 47.8 bits (113), Expect = 6e-06
 Identities = 27/138 (19%), Positives = 36/138 (26%), Gaps = 13/138 (9%)

Query: 333 SPPPPPTSKSSPSTRSHPTPPPPANSPPKS-FHSPPSPPPPPPTHKESPRTHLPPTPPPV 391
           S      S       SH   P  + +   S F +   PP   P     P        PP 
Sbjct: 4   SHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPD 63

Query: 392 YNVSPS-PKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYY 450
                S  +     P+       P T   +P+  Y   P P        +  PP      
Sbjct: 64  TVTGDSVLQRILRGPTG------PGTTSLAPAVRYGRQPGPE-----APASAPPAAGRAV 112

Query: 451 PPPYQQHMAPPPPPGESA 468
           P  Y   +  P P     
Sbjct: 113 PGLYHHPVPEPDPVRVEE 130

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 46.3 bits (109), Expect = 2e-05
 Identities = 24/128 (18%), Positives = 39/128 (30%), Gaps = 2/128 (1%)

Query: 258 GRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPV 317
           G            +  G       +    + +   +    P +   P PP    P     
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 318 PAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPP--PANSPPKSFHSPPSPPPPPPT 375
           P     +S    I   P  P T+  +P+ R    P P  PA++PP +  + P     P  
Sbjct: 62  PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVP 121

Query: 376 HKESPRTH 383
             +  R  
Sbjct: 122 EPDPVRVE 129

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.7 bits (105), Expect = 7e-05
 Identities = 26/130 (20%), Positives = 32/130 (24%), Gaps = 5/130 (3%)

Query: 395 SPSPKHFP--PPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPP 452
           S    H      P   H   P  +  ++ S   A   PP     P   PPP P     P 
Sbjct: 4   SHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPD 63

Query: 453 PYQQHMAPPP-PPGESAEVPAPSYFAYSPPPPPARDENPVAPATPG--APVEYYPPKKGN 509
                        G +         A      P  +    AP   G   P  Y+ P    
Sbjct: 64  TVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEP 123

Query: 510 PPPAPEYYHA 519
            P   E    
Sbjct: 124 DPVRVEEVSR 133

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 22/136 (16%), Positives = 33/136 (24%), Gaps = 5/136 (3%)

Query: 385 PPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPP 444
                    + P   H   P +   +          P      P PP     P  +P   
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPP-----PPPAPAAG 59

Query: 445 PPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYP 504
            P +              P G      AP+      P P A    P A       + ++P
Sbjct: 60  NPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHP 119

Query: 505 PKKGNPPPAPEYYHAS 520
             + +P    E     
Sbjct: 120 VPEPDPVRVEEVSRRI 135

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 41.3 bits (96), Expect = 8e-04
 Identities = 20/110 (18%), Positives = 28/110 (25%), Gaps = 7/110 (6%)

Query: 277 GGSGGSGWGGSPAPATSPRSSPPSSSSP----PPPKRKPPVVKPVPAPRPANSPGPFIRP 332
             +          P T P  +PP   +P    PP       V       P       + P
Sbjct: 29  TSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILRGPTGPGTTSLAP 88

Query: 333 SPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRT 382
           +                  PP    + P  +H P   P P    + S R 
Sbjct: 89  AVRYGRQ---PGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVSRRI 135

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 40/153 (26%), Positives = 61/153 (39%), Gaps = 11/153 (7%)

Query: 22  DLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFP 81
           DL    +A         LT L   +++ N+   +    F  L  L  + L+NN+      
Sbjct: 41  DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100

Query: 82  KLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQFGIPE----NLGNSP 135
            +F  L +L  L L  N+ + S+PS +FD+   L  + LN N+ Q  IP      L N  
Sbjct: 101 GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTN-- 156

Query: 136 VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMN 168
           +  L  + N L   +P         L  I L  
Sbjct: 157 LQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFG 188

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 45/208 (21%), Positives = 75/208 (36%), Gaps = 55/208 (26%)

Query: 33  PPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92
           P  I   T+     + S     +  +TFR L  L  ++L  N+       +F  L +L  
Sbjct: 30  PSGIPADTE--KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87

Query: 93  LDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCI 150
           L L  N+   S+P  +FD    LD ++L  N+ +  +P           VF         
Sbjct: 88  LGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSG---------VF--------- 127

Query: 151 PGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSI-GNMKSL 209
                             D LT            L    ++ N LQ S+P+     + +L
Sbjct: 128 ------------------DRLT-----------KLKELRLNTNQLQ-SIPAGAFDKLTNL 157

Query: 210 EQLNVAHNRFTGVIPSSVCQLPNLQNFT 237
           + L+++ N+   V   +  +L  LQ  T
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTIT 185

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 14/160 (8%)

Query: 21  IDLNHADIAGYLPPEI--GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVG 78
           +DL+H +++  L  E    RLT+L    ++ N    +    F  +  L  +DLS+N    
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 79  KFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQ------FGIPEN 130
               LF  L  L+ L L  N     V    F+    L  ++L+ N+              
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161

Query: 131 LGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDN 170
           L    + +L  ++N L       + K+   +   + +++N
Sbjct: 162 LPK--LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 34/217 (15%), Positives = 64/217 (29%), Gaps = 63/217 (29%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPST-FRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90
           LP     L       ++ N    +       RL  L+ + LS+N       + F+ +P L
Sbjct: 37  LPSYTALL------DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90

Query: 91  KYLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGG 148
           +YLDL  N    ++   LF     L+ + L +N     +  N          F +     
Sbjct: 91  RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVV-VDRN---------AFED----- 134

Query: 149 CIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLP----SSIG 204
                                            +  L    +S N +    P        
Sbjct: 135 ---------------------------------MAQLQKLYLSQNQIS-RFPVELIKDGN 160

Query: 205 NMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
            +  L  L+++ N+   +  + + +LP         +
Sbjct: 161 KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 6e-05
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 11/102 (10%)

Query: 32  LPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRF----VGKFPKLFLS 86
           L   +   L  L +  + +N    V  + F  +  L ++ LS N+     V         
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGN-K 161

Query: 87  LPKLKYLDLRFNEFEGSVPSKLFDK----DLDAIFLNDNRFQ 124
           LPKL  LDL  N+ +  +P     K      + ++L++N  +
Sbjct: 162 LPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 33/181 (18%), Positives = 47/181 (25%), Gaps = 7/181 (3%)

Query: 294 PRSSPPSSSSPPP---PKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHP 350
            R  P      PP    +   P    + AP  A S        P  P   ++ P  R   
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 351 TPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHN 410
                  S P +  +P  P  P P  K    T     PP + +                 
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

Query: 411 TPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEV 470
                  +A  ++             P+    P  P     P YQ+  A   P      +
Sbjct: 131 RELGARVRALKASAQDAGESC----TPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVL 186

Query: 471 P 471
           P
Sbjct: 187 P 187

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 50.5 bits (119), Expect = 1e-06
 Identities = 24/164 (14%), Positives = 45/164 (27%), Gaps = 2/164 (1%)

Query: 287 SPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPST 346
           +P+PA     +P S++S    + +PP        RP       +       P++  +P  
Sbjct: 29  TPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEAPDI 88

Query: 347 RSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPS 406
            + P+P         +   PP           S           +     + K       
Sbjct: 89  PACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDAG 148

Query: 407 HYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYY 450
              +  P    +         P   RF+ + +   P       Y
Sbjct: 149 --ESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYKY 190

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 48.6 bits (114), Expect = 4e-06
 Identities = 22/172 (12%), Positives = 32/172 (18%)

Query: 331 RPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPP 390
           R +PP       SP+  +   P    +   K    P +P           R  L      
Sbjct: 19  RIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVS 78

Query: 391 VYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYY 450
             +   +P     P          P     P    A                        
Sbjct: 79  SPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVR 138

Query: 451 PPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEY 502
                   A      E+   P       +P                  P +Y
Sbjct: 139 ALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPGLPGLVLPYKY 190

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 47.8 bits (112), Expect = 8e-06
 Identities = 22/170 (12%), Positives = 36/170 (21%)

Query: 305 PPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFH 364
              +  PP + P        SP      +P    +     +          A  P +   
Sbjct: 11  ARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRL 70

Query: 365 SPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTH 424
                    P+  E+P     P+P      S      PP  +   +        +     
Sbjct: 71  RLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

Query: 425 YAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPS 474
                  R      Q        E    P +      P       +  P 
Sbjct: 131 RELGARVRALKASAQDAGESCTPEAEGRPEEPCGEKAPAYQRFHALAQPG 180

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 45.5 bits (106), Expect = 4e-05
 Identities = 25/158 (15%), Positives = 35/158 (22%)

Query: 329 FIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTP 388
           F     P PP           P+P  PA   P S  S       PP      +   P   
Sbjct: 9   FFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARR 68

Query: 389 PPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVE 448
               +V        P        P P  K    +     PP                 ++
Sbjct: 69  RLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQ 128

Query: 449 YYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPAR 486
                  +  A      ++ E   P        P   +
Sbjct: 129 RARELGARVRALKASAQDAGESCTPEAEGRPEEPCGEK 166

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 16/122 (13%), Positives = 27/122 (22%)

Query: 285 GGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSP 344
            GS   A  P +     + PP  +R    V  V +P    +P     PSP       +  
Sbjct: 45  SGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPA 104

Query: 345 STRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPP 404
           + +                 S             + +             +      P  
Sbjct: 105 AGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDAGESCTPEAEGRPEEPCG 164

Query: 405 PS 406
             
Sbjct: 165 EK 166

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 61/188 (32%)

Query: 64  KLLYEVDLSNNRF--VGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAI--FLN 119
             L EV+L++ +    G    L     + + L L+ N            +    +   L 
Sbjct: 101 HALDEVNLASCQLDPAG-LRTLLPVFLRARKLGLQLNSLG--------PEACKDLRDLLL 151

Query: 120 DNRFQFGIPENLGNSPVSVLVFANNDLG--GCIPGSIGKMGKTLNEIILMNDNLT----- 172
            +              ++ L  +NN L   G            L E +  N ++T     
Sbjct: 152 HD-----------QCQITTLRLSNNPLTAAGV---------AVLMEGLAGNTSVTHLSLL 191

Query: 173 GCLPPQIG---------MLKN---LTVFDVSFNHL--QG--SLPSSIGNMKSLEQLNVAH 216
                 +G          L     L   +V++N        +L  +     SLE L++  
Sbjct: 192 HT---GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248

Query: 217 NRFT--GV 222
           N  +  G 
Sbjct: 249 NELSSEGR 256

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 40/263 (15%), Positives = 78/263 (29%), Gaps = 50/263 (19%)

Query: 12  SPSLRVVASIDLNHADI----AGYLPPEIGRLTDLAIFHIN-SNRFCGVVPSTFRRLKLL 66
           S  ++   S+D+   ++       L P + +   + +     +   C  + S  R    L
Sbjct: 2   SLDIQ---SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 67  YEVDLSNNRFVGKFPKLF---LSLP--KLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDN 121
            E++L +N             L  P  K++ L L+           L       +     
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC--------CLTGAGCGVLS---- 106

Query: 122 RFQFGIPENLGNSP-VSVLVFANNDLGG----CIPGSIGKMGKTLNEIILMNDNLT--GC 174
                    L   P +  L  ++N LG      +   +      L ++ L   +L+   C
Sbjct: 107 -------STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159

Query: 175 --LPPQIGMLKNLTVFDVSFNHLQGS----LPSSIGNMK-SLEQLNVAHNRFT----GVI 223
             L   +    +     VS N +  +    L   + +    LE L +     T      +
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 219

Query: 224 PSSVCQLPNLQNFTYSFNYFTGE 246
              V    +L+      N     
Sbjct: 220 CGIVASKASLRELALGSNKLGDV 242

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 51/298 (17%), Positives = 95/298 (31%), Gaps = 75/298 (25%)

Query: 11  NSPSLRVVASIDLNHADI--------AGYLPPEIGRLTDLAIFHINSNRF----CGVVPS 58
            +P+L     ++L   ++           L     ++  L    + +       CGV+ S
Sbjct: 54  VNPALA---ELNLRSNELGDVGVHCVLQGLQTPSCKIQKL---SLQNCCLTGAGCGVLSS 107

Query: 59  TFRRLKLLYEVDLSNNRFVGKFPKLFLSL-----PKLKYLDLRFNEFEGSVPSKLFD--- 110
           T R L  L E+ LS+N       +L          +L+ L L +     +    L     
Sbjct: 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167

Query: 111 -----KDLDAIFLNDNRFQFG------IPENLGNSPVS--VLVFANNDLG--GCIPGSIG 155
                K+L    +++N           + + L +SP     L   +  +    C    + 
Sbjct: 168 AKPDFKELT---VSNN--DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR--DLC 220

Query: 156 KM---GKTLNEIILMNDNLT---------GCLPPQIGMLKNLTVFDVSFNHLQ----GSL 199
            +     +L E+ L ++ L          G L P       L    +    +     G L
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPS----SRLRTLWIWECGITAKGCGDL 276

Query: 200 PSSIGNMKSLEQLNVAHNRFT--GVIP-SSVCQLPN--LQNFTYSFNYFTGEPPSCTA 252
              +   +SL++L++A N     G          P   L++       FT     C+ 
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA--CCSH 332

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 38/281 (13%), Positives = 81/281 (28%), Gaps = 56/281 (19%)

Query: 11  NSPSLRVVASIDLNHADI----AGYLPPEIGRLTDLAIFHINSNRF--------CGVVPS 58
               L     + L +  +       L   +    D     +++N          C  +  
Sbjct: 140 PQCRLE---KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKD 196

Query: 59  TFRRLKLLYEVDLSNNRF----VGKFPKLFLSLPKLKYLDLRFNEF--EG----SVPSKL 108
           +  +L+ L    L +             +  S   L+ L L  N+    G          
Sbjct: 197 SPCQLEAL---KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLH 253

Query: 109 FDKDLDAIFLNDNRFQF----GIPENLGNSP-VSVLVFANNDLG--GC--IPGSIGKMGK 159
               L  +++ +          +   L     +  L  A N+LG  G   +  ++ + G 
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313

Query: 160 TLNEIILMNDNLT--GC--LPPQIGMLKNLTVFDVSFNHLQGS--------LPSSIGNMK 207
            L  + + + + T   C      +   + L    +S N L+ +        L        
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ---PGS 370

Query: 208 SLEQLNVAHNRFT--GV--IPSSVCQLPNLQNFTYSFNYFT 244
            L  L +A    +      + +++    +L+    S N   
Sbjct: 371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A Length = 536

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 24/146 (16%), Positives = 38/146 (26%), Gaps = 2/146 (1%)

Query: 287 SPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPST 346
               +  P  +    SS     R       VP  R   +     +P           PS 
Sbjct: 15  GNRRSDEPAKTKKGLSSILDAARWNRGEPQVPDFRHLKAEVDAEKPGATDRKGGVGMPSR 74

Query: 347 RSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPP-PVYNVSPSPKHFPPPP 405
                  P  ++P  S H      P      ++P      +P  P+   S +P       
Sbjct: 75  DR-NIGAPGQDTPGVSLHPLSLDSPDREPGADAPLELGDSSPQGPMSLESLAPPESTDEG 133

Query: 406 SHYHNTPPPPTKKASPSTHYAPPPPP 431
           +   +  P    +   S     P  P
Sbjct: 134 AETESPEPGDEGEPGRSGLELEPEEP 159

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 154 IGKMGKTLNEIILMNDNLTGCLPPQIGM---LKNLTVFDVSFNHLQGSLPSSIGNMKSLE 210
             +    + E++L  DN         G+    + L         L  S+ +++  +  L+
Sbjct: 12  RNRTPSDVKELVL--DNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLK 67

Query: 211 QLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
           +L ++ NR +G +     + PNL +   S N
Sbjct: 68  KLELSDNRVSGGLEVLAEKCPNLTHLNLSGN 98

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 8e-06
 Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 5/104 (4%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
            +D + ++  G L        +L      +     +  +   +L  L +++LS+NR  G 
Sbjct: 23  VLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG 79

Query: 80  FPKLFLSLPKLKYLDLRFNEFEG-SVPSKLFD-KDLDAIFLNDN 121
              L    P L +L+L  N+ +  S    L   ++L ++ L + 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 24/126 (19%), Positives = 54/126 (42%), Gaps = 16/126 (12%)

Query: 111 KDLDAIFLNDNRFQFGIPENLGNSPVSV--LVFANNDLGGCIPGSIGKMGKTLNEIILMN 168
            D+  + L+++R   G  E L +    +  L   N  L   I   + K+   L ++ L +
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKL-NKLKKLELSD 73

Query: 169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQ--GSLPSSIGNMKSLEQLNVAHNRFTGVIPSS 226
           + ++G L        NLT  ++S N ++   ++   +  +++L+ L++ +          
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC------E-- 124

Query: 227 VCQLPN 232
           V  L +
Sbjct: 125 VTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 13  PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGV-VPSTFRRLKLLYEVDL 71
           P L  +  ++L+   ++G L     +  +L   +++ N+   +      ++L+ L  +DL
Sbjct: 61  PKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

Query: 72  SNNRFVGKFP----KLFLSLPKLKYLD 94
            N   V         +F  LP+L YLD
Sbjct: 121 FNCE-VTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 11/94 (11%)

Query: 11  NSPSLRVVASIDLNH---ADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLY 67
            +     +  +   +     IA      + +L  L    ++ NR  G +     +   L 
Sbjct: 37  LTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91

Query: 68  EVDLSNNRF--VGKFPKLFLSLPKLKYLDLRFNE 99
            ++LS N+   +     L   L  LK LDL   E
Sbjct: 92  HLNLSGNKIKDLSTIEPLK-KLENLKSLDLFNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 13/97 (13%)

Query: 145 DLGGCIPGSIGKMGKTLN--EIILMNDN----LTGCLPPQIGMLKNLTVFDVSFNHLQGS 198
           D      G +  +       E +   +     +   LP     L  L   ++S N + G 
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPK----LNKLKKLELSDNRVSGG 79

Query: 199 LPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQN 235
           L        +L  LN++ N+      S++  L  L+N
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKD--LSTIEPLKKLEN 114

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 51.6 bits (123), Expect = 4e-07
 Identities = 24/140 (17%), Positives = 32/140 (22%), Gaps = 10/140 (7%)

Query: 282 SGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSK 341
                    +T   SS  S +               P+  P+  PG         P ++ 
Sbjct: 8   HVDDDDKMFSTQVNSSLTSPTGRGSM--------AAPSLHPSLGPGIGSPGQLHSPISTL 59

Query: 342 SSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHF 401
           SSP     P  P    S P   HS   P  P             P  P   +    P   
Sbjct: 60  SSPINGMGP--PFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLG 117

Query: 402 PPPPSHYHNTPPPPTKKASP 421
                     P       + 
Sbjct: 118 LNGVLKVPAHPSGNMASFTK 137

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 49.3 bits (117), Expect = 2e-06
 Identities = 21/133 (15%), Positives = 29/133 (21%), Gaps = 2/133 (1%)

Query: 332 PSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPV 391
                     S+    S  +P    +    S H    P    P    SP +    + P  
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPIS--TLSSPIN 64

Query: 392 YNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYP 451
               P      P   H  + P  PT   S  +     P           PP         
Sbjct: 65  GMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKV 124

Query: 452 PPYQQHMAPPPPP 464
           P +          
Sbjct: 125 PAHPSGNMASFTK 137

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 24/123 (19%), Positives = 35/123 (28%), Gaps = 7/123 (5%)

Query: 332 PSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPV 391
            + P    S ++PS   HP+  P   SP    HSP S    P      P + +     P 
Sbjct: 24  LTSPTGRGSMAAPS--LHPSLGPGIGSPG-QLHSPISTLSSPINGMGPPFSVISSPMGP- 79

Query: 392 YNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYP 451
                      P       +P   +     S+     PP     V K    P   +  + 
Sbjct: 80  ---HSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNMASFT 136

Query: 452 PPY 454
              
Sbjct: 137 KHI 139

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 44.3 bits (104), Expect = 9e-05
 Identities = 19/121 (15%), Positives = 28/121 (23%)

Query: 348 SHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSH 407
                    NS   S     S   P       P    P       +   SP +   PP  
Sbjct: 12  DDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS 71

Query: 408 YHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGES 467
             ++P  P   + P+T                +P         P      +  P  P  +
Sbjct: 72  VISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGN 131

Query: 468 A 468
            
Sbjct: 132 M 132

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 42.0 bits (98), Expect = 5e-04
 Identities = 20/142 (14%), Positives = 30/142 (21%), Gaps = 7/142 (4%)

Query: 300 SSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRS--HPTPPPPAN 357
           +            +          +  G        P       P   S      P    
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRG--SMAAPSLHPSLGPGIGSPGQLHSPISTL 59

Query: 358 SPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTK 417
           S P +   PP      P     P +   PT P +   + SP+   P      +    P  
Sbjct: 60  SSPINGMGPPFSVISSPM---GPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPL 116

Query: 418 KASPSTHYAPPPPPRFYYVPKQ 439
             +        P        K 
Sbjct: 117 GLNGVLKVPAHPSGNMASFTKH 138

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 22/135 (16%), Positives = 32/135 (23%), Gaps = 2/135 (1%)

Query: 405 PSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPP 464
             H+H+      K  S   + +   P     +   S  P        P       P    
Sbjct: 2   AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHS--PISTL 59

Query: 465 GESAEVPAPSYFAYSPPPPPARDENPVAPATPGAPVEYYPPKKGNPPPAPEYYHASPPPS 524
                   P +   S P  P     P  P    +          NP  + E        +
Sbjct: 60  SSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLN 119

Query: 525 GCDIIPPSHHHNPPS 539
           G   +P     N  S
Sbjct: 120 GVLKVPAHPSGNMAS 134

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 23/134 (17%), Positives = 32/134 (23%), Gaps = 4/134 (2%)

Query: 364 HSPPSPPPPPPTHKESPRTHLPPTPPP-VYNVSPSPKHFPPPPSHYHNTPPPPTKKASPS 422
           H          T   S  T           ++ PS       P   H+     +   SP 
Sbjct: 7   HHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS---SPI 63

Query: 423 THYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPP 482
               PP       +   S   P             ++ P  P  S+E   P         
Sbjct: 64  NGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLK 123

Query: 483 PPARDENPVAPATP 496
            PA     +A  T 
Sbjct: 124 VPAHPSGNMASFTK 137

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 41.2 bits (96), Expect = 8e-04
 Identities = 26/155 (16%), Positives = 38/155 (24%), Gaps = 27/155 (17%)

Query: 439 QSPPPPPPVEYYPPPYQQHMAPPPPPGESAEVPAPSYFAYSPPPPPARDENPVAPATPGA 498
                    + +       +  P   G  A   APS      P               G+
Sbjct: 5   HHHHVDDDDKMFSTQVNSSLTSPTGRGSMA---APSLHPSLGP-------------GIGS 48

Query: 499 PVEYYPPKKGNPPPAPEYYHASPPPSGCDIIPPSHHHNPPSWHHQTPPSPNYHSYAVPPP 558
           P + + P                 P      P S   +P   H  + P+     ++   P
Sbjct: 49  PGQLHSPI-----------STLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSP 97

Query: 559 PSPSPPTPPPSPYDNTPLPPIIGVSYASPPPPVIP 593
              SP  P  S  D  P   + GV      P    
Sbjct: 98  QLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGNM 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 160 TLNEIILMNDNLT-GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNR 218
            + E++L N     G +        NL    +    L  S+ S++  +  L++L ++ NR
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENR 82

Query: 219 FTGVIPSSVCQLPNLQNFTYSFN 241
             G +     +LPNL +   S N
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGN 105

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 7/104 (6%)

Query: 21  IDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKF 80
           +D   ++  G +        +L    + +     V  S   +L  L +++LS NR  G  
Sbjct: 31  LDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGL 87

Query: 81  PKLFLSLPKLKYLDLRFNEFE--GSVPSKLFD-KDLDAIFLNDN 121
             L   LP L +L+L  N+ +   ++   L   + L ++ L + 
Sbjct: 88  DMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRLKLLYEV 69
           N P L  +  ++L+   I G L     +L +L   +++ N+   +      ++L+ L  +
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 70  DLSNNRFVGKFP----KLFLSLPKLKYLDLR 96
           DL N   V         +F  LP+L YLD  
Sbjct: 126 DLFNCE-VTNLNDYRESVFKLLPQLTYLDGY 155

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 5/93 (5%)

Query: 145 DLGGCIPGSIGKMGKTLN--EIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSS 202
           D      G I  +       E + + +     +   +  L  L   ++S N + G L   
Sbjct: 32  DNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSENRIFGGLDML 90

Query: 203 IGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQN 235
              + +L  LN++ N+   +  S++  L  L+ 
Sbjct: 91  AEKLPNLTHLNLSGNKLKDI--STLEPLKKLEC 121

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 6e-05
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 11/85 (12%)

Query: 20  SIDLNH---ADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRF 76
            + L +     ++  LP    +L  L    ++ NR  G +     +L  L  ++LS N+ 
Sbjct: 53  FLSLINVGLISVSN-LP----KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 77  --VGKFPKLFLSLPKLKYLDLRFNE 99
             +     L   L  LK LDL   E
Sbjct: 108 KDISTLEPLK-KLECLKSLDLFNCE 131

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
           LP     L  L +  ++ NR   +     R L  L E+ L  N      P L    PKL+
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 92  YLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQ 124
            L L  N     +P+ L +   +LD + L +N   
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 41/210 (19%), Positives = 67/210 (31%), Gaps = 53/210 (25%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR------FVG------- 78
           LPP++    D  I H++ N       +T      L +++L                    
Sbjct: 25  LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82

Query: 79  --------KFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQFGIP 128
                     P L  +LP L  LD+ FN    S+P        +L  ++L  N  +  +P
Sbjct: 83  DLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT-LP 140

Query: 129 ENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQI-GMLKNLTV 187
                      +                    L ++ L N+NLT  LP  +   L+NL  
Sbjct: 141 PG---------LLTP--TPK------------LEKLSLANNNLTE-LPAGLLNGLENLDT 176

Query: 188 FDVSFNHLQGSLPSSIGNMKSLEQLNVAHN 217
             +  N L  ++P        L    +  N
Sbjct: 177 LLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 26/166 (15%), Positives = 42/166 (25%), Gaps = 7/166 (4%)

Query: 286 GSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPS 345
           G+ A   +   S   S     P       +  P      +P     P   PP      P 
Sbjct: 20  GTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPGGLAEPPG 79

Query: 346 TRSHPTPP--PPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPP 403
           +      P   P ++ P       +P     + ++  +         + N+S    +   
Sbjct: 80  SAGPQAGPTVVPGSATPMETGIAETPEGRRTSRRKRAKVEYREMDESLANLSEDEYYSEE 139

Query: 404 PPSH-----YHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPP 444
             +          PPPP           P  P        QS  P 
Sbjct: 140 ERNAKAEKEKKLPPPPPQAPPEEENESEPEEPSGVEGAAFQSRLPH 185

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 9/95 (9%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
           LP  I  +       +  N    + P  F   K L  +DLSNN+     P  F  L  L 
Sbjct: 30  LPETITEI------RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83

Query: 92  YLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQ 124
            L L  N+    +P  LF+    L  + LN N+  
Sbjct: 84  SLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN 117

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 38  RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97
            L  L    +  N+   +  S F  L  L  + L+ N+        F  L  L  L L  
Sbjct: 78  GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 98  NEFEGSVPSKLFD--KDLDAIFLNDN 121
           N+ + ++    F   + +  + L  N
Sbjct: 138 NKLQ-TIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 26/182 (14%), Positives = 55/182 (30%), Gaps = 59/182 (32%)

Query: 56  VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DL 113
           +P T   +       L  N      P  F    KL+ +DL  N+    +    F     L
Sbjct: 30  LPETITEI------RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSL 82

Query: 114 DAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG 173
           +++ L  N+    +P++         +F                           + L  
Sbjct: 83  NSLVLYGNKITE-LPKS---------LF---------------------------EGLF- 104

Query: 174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSI-GNMKSLEQLNVAHNRFTGVIPSSVCQLPN 232
                     +L +  ++ N +   L      ++ +L  L++  N+   +   +   L  
Sbjct: 105 ----------SLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153

Query: 233 LQ 234
           +Q
Sbjct: 154 IQ 155

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 3/94 (3%)

Query: 33  PPEIGRLTDLAIFHINSNRFCGVVPS-TFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
              +    +L   +I + +    +     R L  L  + +  +      P  F   P+L 
Sbjct: 24  LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83

Query: 92  YLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQ 124
            L+L FN  E S+  K      L  + L+ N   
Sbjct: 84  RLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 4/94 (4%)

Query: 56  VPSTFRRLKLLYEVDLSNNRFVGKFPK-LFLSLPKLKYLDLRFNEFEGSVPSKLFD--KD 112
                   + L E+ + N + +          L +L+ L +  +     V    F     
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 113 LDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDL 146
           L  + L+ N  +    + +    +  LV + N L
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 22/148 (14%), Positives = 34/148 (22%), Gaps = 1/148 (0%)

Query: 325 SPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPP-PPPPTHKESPRTH 383
           +    I+  P     S +  +  S     P  ++         SP    P +    P   
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGS 65

Query: 384 LPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPP 443
           L       +  S + K   P P                    +P   P       +  P 
Sbjct: 66  LQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILELLKCEPD 125

Query: 444 PPPVEYYPPPYQQHMAPPPPPGESAEVP 471
            P V+     Y Q         E     
Sbjct: 126 EPQVQAKIMAYLQQEQANRSKHEKLSTF 153

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 22/154 (14%), Positives = 33/154 (21%), Gaps = 12/154 (7%)

Query: 343 SPSTRSHPTPPPPANS------PPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSP 396
           + S      P     S         S   P +    PPT  +       P    +     
Sbjct: 6   AMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTM----- 60

Query: 397 SPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPRFYYVPKQSPPPPPPVEYYPPPYQQ 456
            P H        +   P    K+     Y   P     Y    S     P        + 
Sbjct: 61  -PPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPESIMGYSYMDSYQTSSPASIPHLILEL 119

Query: 457 HMAPPPPPGESAEVPAPSYFAYSPPPPPARDENP 490
               P  P   A++ A      +      +    
Sbjct: 120 LKCEPDEPQVQAKIMAYLQQEQANRSKHEKLSTF 153

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 22/144 (15%), Positives = 39/144 (27%), Gaps = 6/144 (4%)

Query: 288 PAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTR 347
            A +   ++ P   +     +      K +P    A  P  + R      P S + P   
Sbjct: 5   EAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHG 64

Query: 348 SHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPSH 407
           S        + P ++  S    P        SP + +  +    Y  + SP   P     
Sbjct: 65  SLQGYQTYGHFPSRAIKSEYPDPYTS-----SPESIMGYSYMDSYQ-TSSPASIPHLILE 118

Query: 408 YHNTPPPPTKKASPSTHYAPPPPP 431
                P   +  +    Y      
Sbjct: 119 LLKCEPDEPQVQAKIMAYLQQEQA 142

>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin, armadillo repeat, nuclear receptor LIGA binding domain, protein binding; HET: P6L; 2.76A {Homo sapiens} Length = 352

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 4/118 (3%)

Query: 292 TSPRSSPPSSSSPPPPK--RKPPVVKPVP-APRPANSPGPFIRPSPPPPPTSKSSPSTRS 348
           ++ +  P + ++ PP    R P V  P+     P  S   +      P    KS      
Sbjct: 29  SASKGLPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPY 88

Query: 349 HPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPPPPS 406
             +P           +   SP   P    E  +   P  P     +    +      S
Sbjct: 89  TSSPESIMGYSYMDSYQTSSPASIPHLILELLKCE-PDEPQVQAKIMAYLQQEQANRS 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 12/79 (15%)

Query: 170 NLTGCLPPQI----GMLKNLTVFDVSFNHLQGSLPSSIGN---MKSLEQLNVAHNRFTGV 222
           +L G   P I      L      D S N +       +     ++ L+ L V +NR   +
Sbjct: 25  DLRGYKIPVIENLGATLDQFDAIDFSDNEI-----RKLDGFPLLRRLKTLLVNNNRICRI 79

Query: 223 IPSSVCQLPNLQNFTYSFN 241
                  LP+L     + N
Sbjct: 80  GEGLDQALPDLTELILTNN 98

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 24/140 (17%)

Query: 63  LKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNE---FEGSVPSKLFDKDLDAIFLN 119
                E+DL   + +     L  +L +   +D   NE    +G     L  + L  + +N
Sbjct: 18  AVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDGF--PLL--RRLKTLLVN 72

Query: 120 DNRFQFGIPENLGNSPVS--VLVFANN---DLGGCIPGSIGKMGKTLNEIILMNDNLTGC 174
           +NR    I E L  +      L+  NN   +LG   P  +  + K+L  + ++ + +   
Sbjct: 73  NNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDP--LASL-KSLTYLCILRNPV--T 126

Query: 175 LPPQ-----IGMLKNLTVFD 189
                    I  +  + V D
Sbjct: 127 NKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 145 DLGGCIPGSIGKMGKTLN--EIILMNDN----LTGCLPPQIGMLKNLTVFDVSFNHLQGS 198
           DL G     I  +G TL+  + I  +DN    L G       +L+ L    V+ N +   
Sbjct: 25  DLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG-----FPLLRRLKTLLVNNNRICRI 79

Query: 199 LPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQN 235
                  +  L +L + +N         +  L +L++
Sbjct: 80  GEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKS 114

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 37/114 (32%)

Query: 13  PSLRVVASIDLNHADIA--GYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
                   ID +  +I      P     L  L    +N+NR C +     + L  L E+ 
Sbjct: 42  DQFDA---IDFSDNEIRKLDGFP----LLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94

Query: 71  LSNNR--------FVGKFPKL--------------------FLSLPKLKYLDLR 96
           L+NN          +     L                       +P+++ LD +
Sbjct: 95  LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 58  STFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFE--GSVPSKLFD-KDLD 114
             F  L+ L  + ++NNR       L  +LP L  L L  N     G +   L   K L 
Sbjct: 58  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLT 116

Query: 115 AIFLNDN 121
            + +  N
Sbjct: 117 YLCILRN 123

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 54/197 (27%)

Query: 54  GVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDL 113
            VV +   +++L             K      +L   K+L L  N  E     K+     
Sbjct: 19  SVVATEAEKVEL----HGMIPPIE-KMDATLSTLKACKHLALSTNNIE-----KI----- 63

Query: 114 DAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMN---D 169
                           +L     + +L    N +   I   +  +  TL E+ +      
Sbjct: 64  ---------------SSLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYNQIA 106

Query: 170 NLTGCLPPQIGMLKNLTVFDVSFNHLQ--GSLPSSIGNMKSLEQLNVAHNRFTGVIPSS- 226
           +L+G     I  L NL V  +S N +   G +   +  +  LE L +A N        + 
Sbjct: 107 SLSG-----IEKLVNLRVLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENN 160

Query: 227 ---------VCQLPNLQ 234
                    V +LPNL+
Sbjct: 161 ATSEYRIEVVKRLPNLK 177

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 5/101 (4%)

Query: 32  LPPEI-GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL 90
           LP  +  +LT+L    +  N+   +    F +L  L  ++L++N+       +F  L  L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159

Query: 91  KYLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQFGIPE 129
             LDL +N+ + S+P  +FDK   L  + L  N+ +  +P+
Sbjct: 160 TELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPD 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 9/95 (9%)

Query: 34  PEIGRLTDLAIFHINSNRF--CGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
             I  L ++    +  N+           + L  L  + L+ N+       +F  L  LK
Sbjct: 57  QGIQYLPNVRYLALGGNKLHDISA----LKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112

Query: 92  YLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQ 124
            L L  N+ + S+P  +FDK  +L  + L  N+ Q
Sbjct: 113 ELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ 146

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 47.6 bits (112), Expect = 7e-06
 Identities = 28/195 (14%), Positives = 59/195 (30%), Gaps = 23/195 (11%)

Query: 49  SNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKL 108
           S      +      + LL  + +     +          P LK L++       SV   +
Sbjct: 157 SWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK---KPRPNLKSLEIISGGLPDSVVEDI 213

Query: 109 FDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMN 168
              DL    L       G+ +   +  ++V            P         L  + +++
Sbjct: 214 LGSDLPN--LEKLVLYVGVEDYGFDGDMNVFR----------PLFSKDRFPNLKWLGIVD 261

Query: 169 DNLTGCLPPQIG---MLKNLTVFDVSFNHLQGS----LPSSIGNMKSLEQLNVAHNRFTG 221
                 +        +L  L   D+S   L       L   +  +K L+ +N+ +N  + 
Sbjct: 262 AEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321

Query: 222 VIPSSVCQ-LPNLQN 235
            +   + + LP   +
Sbjct: 322 EMKKELQKSLPMKID 336

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 4/112 (3%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK 79
            +DL    +          LT L   ++  N+   +    F +L  L  ++LS N+    
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 80  FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQFGIPE 129
              +F  L +LK L L  N+ + S+P  +FDK   L  + L  N+ +  +P+
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPD 141

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 40  TDLAIFHINSNRFCGVVPS-TFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN 98
                  +N N    +     F RL  L +++L  N+  G  P  F     ++ L L  N
Sbjct: 29  LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88

Query: 99  EFEGSVPSKLFDK--DLDAIFLNDNRFQFGIPE 129
           + +  + +K+F     L  + L DN+    +  
Sbjct: 89  KIK-EISNKMFLGLHQLKTLNLYDNQIS-CVMP 119

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 38  RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97
           RL  L    +  N+  G+ P+ F     + E+ L  N+      K+FL L +LK L+L  
Sbjct: 52  RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111

Query: 98  NEFEGSVPSKLFD--KDLDAIFLNDN 121
           N+    V    F+    L ++ L  N
Sbjct: 112 NQIS-CVMPGSFEHLNSLTSLNLASN 136

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 46.8 bits (109), Expect = 2e-05
 Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 9/102 (8%)

Query: 324 NSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTH 383
            +    + P    P       +    P      N   ++  + P      PT    P   
Sbjct: 402 ATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRA-VNVPKVTKEKPTPPVKPTAP 460

Query: 384 LPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHY 425
             PT      + P+P             P PPT+      H+
Sbjct: 461 TKPTYETEKPLKPAPVAPNYEK-----EPTPPTR---LEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 46.4 bits (108), Expect = 2e-05
 Identities = 38/203 (18%), Positives = 58/203 (28%), Gaps = 10/203 (4%)

Query: 190 VSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS 249
           ++F++   S+ S      S+E       +F  +  SS+ +   +   T + N+  GE  S
Sbjct: 301 INFDNALLSVASLNREHNSIEMAKDYSGKFVKISGSSIGEKNGMIYATDTLNFKQGEGGS 360

Query: 250 CTAAAGGGGRMMAARPADCSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKR 309
                           +D      G G              ATS  +  P S  P  P +
Sbjct: 361 RWTMYKNSQAGSGWDSSDAPNSWYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGK 420

Query: 310 KPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSP 369
                K        N         P               PTPP    +P K  +    P
Sbjct: 421 DNTDGKKPNIWYSLNGK-IRAVNVPKVTKE---------KPTPPVKPTAPTKPTYETEKP 470

Query: 370 PPPPPTHKESPRTHLPPTPPPVY 392
             P P      +   PPT    +
Sbjct: 471 LKPAPVAPNYEKEPTPPTRLEHH 493

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 10/115 (8%)

Query: 344 PSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVYNVSPSPKHFPP 403
           P+  + P  P  A +   +   P +P PP      +          P     P P     
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 404 PPSHYHNTPPPPTKKASPSTHYAP----PPPP-----RFYYVPKQSPPPPPPVEY 449
             +  H T     +        A     PPP      +F   P++ P  P    Y
Sbjct: 62  TVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQF-EQPRRCPTRPEGQNY 115

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 17/97 (17%), Positives = 25/97 (25%), Gaps = 6/97 (6%)

Query: 322 PANSPGPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKS--FHSPPSPPPPPPTHKES 379
           PA    P           +   P+T + P         PK      P +P PP P    +
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNA 61

Query: 380 PRTHLPPTPPPVYNVSPSPKHFPPPPSHYHNTPPPPT 416
                  T         +          ++  PPP  
Sbjct: 62  TVAAGHATLREHLRDIKAENTDAN----FYVCPPPTG 94

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 286 GSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSPS 345
           G+P  A + +++    ++P PP        P   P+P  +  P   P+PP P    ++ +
Sbjct: 9   GTPGVAAATQAANGGPATPAPP---ALGAAPTGDPKPKKNKKP-KNPTPPRPAGDNATVA 64

Query: 346 TRSHPTPPPPANSPPKSFHSPPSPPPPPPT 375
                      +   ++  +     PPP  
Sbjct: 65  AGHATLREHLRDIKAENTDANFYVCPPPTG 94

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 34/222 (15%), Positives = 66/222 (29%), Gaps = 41/222 (18%)

Query: 38  RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97
            +TD  +  I +  F       F+ L L      S +        +  +   LK LDLR 
Sbjct: 116 VVTDDCLELI-AKSF-----KNFKVLVLSSCEGFSTDGLA----AIAATCRNLKELDLRE 165

Query: 98  NEFEGSVPSKLFDKDLDAIFLNDNRFQ----FGIPENLGNSPVSVLVFANN-------DL 146
           ++        +    L                 +   +  S +  L             L
Sbjct: 166 SDV-----DDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL--VTRCPNLKSLKL 218

Query: 147 GGCIP----GSIGKMGKTLNEIIL------MNDNLTGCLPPQIGMLKNLTVFDVSFNHLQ 196
              +P     ++ +    L E+        +  ++   L   +   K L      ++ + 
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP 278

Query: 197 GSLPSSIGNMKSLEQLNVAHNRFT--GVIPSSVCQLPNLQNF 236
             LP+       L  LN+++       ++   +CQ P LQ  
Sbjct: 279 AYLPAVYSVCSRLTTLNLSYATVQSYDLV-KLLCQCPKLQRL 319

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
           +P E+     L +  +++NR   +   +F  +  L  + LS NR     P+ F  L  L+
Sbjct: 46  VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105

Query: 92  YLDLRFNEFEGSVPSKLFD--KDLDAIFLNDN 121
            L L  N+    VP   F+    L  + +  N
Sbjct: 106 LLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 4/92 (4%)

Query: 40  TDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNE 99
           +      + SN+   +    F +L  L ++ LS N+       +F  L KL  L L  N+
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 100 FEGSVPSKLFDK--DLDAIFLNDNRFQFGIPE 129
            + S+P+ +FDK   L  + L+ N+ +  +P+
Sbjct: 88  LQ-SLPNGVFDKLTQLKELALDTNQLK-SVPD 117

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 38  RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF 97
           +LT L    ++ N+   +    F +L  L  + L  N+       +F  L +LK L L  
Sbjct: 50  KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109

Query: 98  NEFEGSVPSKLFD--KDLDAIFLNDN 121
           N+ + SVP  +FD    L  I+L+ N
Sbjct: 110 NQLK-SVPDGIFDRLTSLQKIWLHTN 134

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 19/108 (17%), Positives = 30/108 (27%), Gaps = 7/108 (6%)

Query: 327 GPFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPP 386
             F          +++           P A++                     P+ + PP
Sbjct: 337 CQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPP 396

Query: 387 --TPPPVYNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTHYAPPPPPR 432
               PP       P+ +PP        PPPP    +P     P  PP+
Sbjct: 397 PQGYPPQ---GYPPQGYPPQGYPPQGYPPPPQ--GAPPQGAPPAAPPQ 439

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 41.4 bits (97), Expect = 6e-04
 Identities = 18/107 (16%), Positives = 28/107 (26%)

Query: 268 CSKMQCGRGGGSGGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPG 327
              + C +           +     +  SS  + S+     ++   +      + A  P 
Sbjct: 331 PWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPP 390

Query: 328 PFIRPSPPPPPTSKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPP 374
               P P   P     P        PP    PP     P   PP  P
Sbjct: 391 QGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAP 437

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 33  PPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92
           P  I   T+  I +++ N+   + P  F  L  L E+ L +N+       +F SL +L  
Sbjct: 35  PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTV 92

Query: 93  LDLRFNEFEGSVPSKLFDK--DLDAIFLNDNRFQ 124
           LDL  N+    +PS +FD+   L  +F+  N+  
Sbjct: 93  LDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT 125

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 16/111 (14%), Positives = 21/111 (18%), Gaps = 3/111 (2%)

Query: 285 GGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPTSKSSP 344
            G       P+  PP  S+  P                A        PSP          
Sbjct: 20  NGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFS 79

Query: 345 STRS---HPTPPPPANSPPKSFHSPPSPPPPPPTHKESPRTHLPPTPPPVY 392
           S  +     T    A    +               +       P T    Y
Sbjct: 80  SLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPHTDWAKY 130

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 37/236 (15%), Positives = 66/236 (27%), Gaps = 49/236 (20%)

Query: 11  NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVD 70
           N  SL  V   D    ++ G        L +     +N       +P  +  L    ++ 
Sbjct: 218 NCRSLVSVKVGDFEILELVG-FFKAAANLEEFCGGSLNE---DIGMPEKYMNLVFPRKLC 273

Query: 71  LSNNRFVGK--FPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIP 128
                ++G    P LF    +++ LDL +          L  +D   +            
Sbjct: 274 RLGLSYMGPNEMPILFPFAAQIRKLDLLYA--------LLETEDHCTLI----------- 314

Query: 129 ENLGNSPVSVLVFANNDLGGCIP----GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKN 184
           +   N  + VL     +    I       + +  K L  +      +      Q    + 
Sbjct: 315 QKCPN--LEVL-----ETRNVIGDRGLEVLAQYCKQLKRL-----RIERGADEQGMEDEE 362

Query: 185 LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ-LPNLQNFTYS 239
             V       L           + LE + V  +  T     S+   L NL +F   
Sbjct: 363 GLVSQRGLIAL-------AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 22/153 (14%), Positives = 39/153 (25%), Gaps = 10/153 (6%)

Query: 280 GGSGWGGSPAPATSPRSSPPSSSSPPPPKRKPPVVKPVPAPRPANSPGPFIRPSPPPPPT 339
                  S  P      + PS  +PP  +        V   R +       R +PPP  +
Sbjct: 295 YQQSQIASAPPRAVGHGAGPSGLAPPALQNDRQ--SGVDEGRTSGWSSMDRRRAPPPIAS 352

Query: 340 SKSSPSTRSHPTPPPPANSPPKSFHSPPSPPPPPPTHKES--------PRTHLPPTPPPV 391
             +    ++        +  P    S         + + +        P     P+    
Sbjct: 353 VGTLAKQKAPVGNDASFSKEPVISASNFLGRSSGSSRRPAVSSSRDVMPIDTSEPSRTRA 412

Query: 392 YNVSPSPKHFPPPPSHYHNTPPPPTKKASPSTH 424
            + SP        P           K +S + H
Sbjct: 413 TDASPGAFRRTSGPQKSSPVNSAEPKHSSSARH 445

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
           +P  I   TD     +N+N+   + P  F  L  L ++  ++N+       +F  L +L 
Sbjct: 27  VPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLT 84

Query: 92  YLDLRFNEFEGSVPSKLFD--KDLDAIFLNDN 121
            LDL  N  + S+P   FD  K L  I+L +N
Sbjct: 85  QLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNN 115

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.5 bits (93), Expect = 8e-04
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
           +P  I   T   + ++  N+   + P  F RL  L  +DL NN+       +F  L +L 
Sbjct: 24  VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81

Query: 92  YLDLRFNEFEGSVPSKLFD--KDLDAIFLNDN 121
            L L  N+ + S+P   FD  K L  I+L +N
Sbjct: 82  QLSLNDNQLK-SIPRGAFDNLKSLTHIWLLNN 112

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 9e-04
 Identities = 36/242 (14%), Positives = 67/242 (27%), Gaps = 64/242 (26%)

Query: 7   RSPFNSP-SLRVVAS-IDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLK 64
                      ++   +D    D    LP E+       +  I          +T+   K
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQD----LPREVLTTNPRRLSIIA--ESIRDGLATWDNWK 348

Query: 65  LLYEVDLSNNRFVGKFPKLF-LSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRF 123
                D        K   +   SL  L+  + R          K+F   L ++F      
Sbjct: 349 H-VNCD--------KLTTIIESSLNVLEPAEYR----------KMF-DRL-SVF------ 381

Query: 124 QFGIPENLGNSPVSVLVFANNDLGGCIPGSI--GKMGKTLNEIILMNDNLTGCLPPQIGM 181
               P +  + P  +L             S+    + K+   ++ +N      L     +
Sbjct: 382 ----PPSA-HIPTILL-------------SLIWFDVIKSDVMVV-VNKLHKYSL-----V 417

Query: 182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN 241
            K      +S   +   L   + N  +L +  V H        S     P L    Y ++
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--YFYS 475

Query: 242 YF 243
           + 
Sbjct: 476 HI 477

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	595
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.82
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.77
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.66
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.62
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.55
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.54
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.47
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.39
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.38
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.34
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.18
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.1
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.04
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.95
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.87
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.84
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.84
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.72
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.62
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.95
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.8
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.68
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.33
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.13
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	89.16
3pss_A	216	QNR; pentapeptide repeat, antibiotic resistance, D	88.7
2j8k_A	201	NP275-NP276; pentapeptide repeat protein, PRP, rig	87.27
2xt2_A	200	ALBG, MCBG-like protein; cell cycle, right handed	85.82
2w7z_A	214	EFSQNR, pentapeptide repeat family protein; glutar	83.76
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	82.67

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=3.6e-36  Score=312.18  Aligned_cols=262  Identities=25%  Similarity=0.413  Sum_probs=234.2

Q ss_pred             CceecccCCCCCCCCCceeEEEccCCCCCC--CCchhhcCCCCCcEEEccC-CcCCCCCchhhcCCCCCCEEeccCCcCC
Q 007628            1 MGVFCARSPFNSPSLRVVASIDLNHADIAG--YLPPEIGRLTDLAIFHINS-NRFCGVVPSTFRRLKLLYEVDLSNNRFV   77 (595)
Q Consensus         1 ~gv~C~~~~~~~~~l~~L~~LdLs~n~i~~--~lp~~~~~L~~L~~L~Ls~-N~l~~~lp~~~~~L~~L~~L~Ls~N~Ls   77 (595)
                      .||+|+...    ...+|+.|+|++|+|++  .++..|+++.+|++|+|++ |+|.+.++.+|++|.+|++|+|++|+|+
T Consensus        39 ~gv~C~~~~----~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  114 (313)
T 1ogq_A           39 LGVLCDTDT----QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS  114 (313)
T ss_dssp             TTEEECCSS----SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE
T ss_pred             cceEeCCCC----CCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC
Confidence            489997532    12579999999999999  8999999999999999995 9999999999999999999999999999


Q ss_pred             CcCchhcCCCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-C-CceeEEeeccCCCCCcCccc
Q 007628           78 GKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-S-PVSVLVFANNDLGGCIPGSI  154 (595)
Q Consensus        78 g~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~-~L~~L~L~~N~l~~~ip~~l  154 (595)
                      +.++..|.++.+|++|||++|+|++.++..+.. .+|++|+|++|++++.++..+.. . .|++|+|++|++++.++..|
T Consensus       115 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~  194 (313)
T 1ogq_A          115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence            999999999999999999999999988887766 89999999999999888887766 3 79999999999999999999


Q ss_pred             ccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCc
Q 007628          155 GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQ  234 (595)
Q Consensus       155 ~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~  234 (595)
                      +.+ . |++|+|++|++.+.++..|..+.+|++|+|++|.|++.++. +..+.+|++|+|++|+|++.++.+|.++.+|+
T Consensus       195 ~~l-~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~  271 (313)
T 1ogq_A          195 ANL-N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             GGC-C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             hCC-c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence            998 4 99999999999999999999999999999999999977665 88899999999999999999999999999999


Q ss_pred             EEEcccccCCCCCCccccccCCCCcccccCCCCCC
Q 007628          235 NFTYSFNYFTGEPPSCTAAAGGGGRMMAARPADCS  269 (595)
Q Consensus       235 ~L~Ls~N~Lsg~~p~~~~~~~~~~~~~~~~~~~c~  269 (595)
                      +|+|++|+|+|.++............+.+|.+.|+
T Consensus       272 ~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             EEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             EEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence            99999999999988764444444444555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=9.8e-35  Score=336.62  Aligned_cols=259  Identities=23%  Similarity=0.413  Sum_probs=227.8

Q ss_pred             CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628           12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK   91 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~   91 (595)
                      +.++.+|+.|+|++|++++.++..|+++.+|++|+|++|+|.+.++..|+++.+|++|+|++|+|++.++..|.++.+|+
T Consensus       414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  493 (768)
T 3rgz_A          414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN  493 (768)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence            45677888888888888888888888888899999999988888888888999999999999999988888899999999


Q ss_pred             EEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccc------------
Q 007628           92 YLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKM------------  157 (595)
Q Consensus        92 ~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l------------  157 (595)
                      +|||++|+|+|.++.++.. .+|++|+|++|++++.++..+.. .+|++|+|++|.|+|.++..++++            
T Consensus       494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~  573 (768)
T 3rgz_A          494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK  573 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred             EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence            9999999999888887766 78999999999998888877765 679999999999888777655431            


Q ss_pred             ---------------------------------------------------------cchhhHHHhhccccCCCCCCccC
Q 007628          158 ---------------------------------------------------------GKTLNEIILMNDNLTGCLPPQIG  180 (595)
Q Consensus       158 ---------------------------------------------------------~~~L~~L~Ls~N~l~g~ip~~~~  180 (595)
                                                                               ..+|+.|+|++|+++|.++.+|+
T Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~  653 (768)
T 3rgz_A          574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG  653 (768)
T ss_dssp             EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence                                                                     14578899999999999999999


Q ss_pred             CCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccccCCCCcc
Q 007628          181 MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAGGGGRM  260 (595)
Q Consensus       181 ~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~~~~~~~  260 (595)
                      +|.+|++|||++|+|+|.++++|++|++|++|||++|+|+|.++..|.++.+|++|||++|+|+|.|+....+.......
T Consensus       654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~  733 (768)
T 3rgz_A          654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK  733 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG
T ss_pred             ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999877776667777


Q ss_pred             cccCCCCCCC
Q 007628          261 MAARPADCSK  270 (595)
Q Consensus       261 ~~~~~~~c~~  270 (595)
                      +.+|...|+.
T Consensus       734 ~~gN~~Lcg~  743 (768)
T 3rgz_A          734 FLNNPGLCGY  743 (768)
T ss_dssp             GCSCTEEEST
T ss_pred             hcCCchhcCC
Confidence            8888888864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=2.3e-33  Score=291.08  Aligned_cols=233  Identities=26%  Similarity=0.419  Sum_probs=217.6

Q ss_pred             CCCCCCceeEEEccC-CCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCC
Q 007628           11 NSPSLRVVASIDLNH-ADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPK   89 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~-n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~   89 (595)
                      .+.++.+|++|+|++ |++.+.++..|+++.+|++|+|++|+|++.++..|+++.+|++|+|++|+|++.++..|.++.+
T Consensus        71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            456789999999995 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEccCCCCCCCCCccccc-c-CCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhh
Q 007628           90 LKYLDLRFNEFEGSVPSKLFD-K-DLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILM  167 (595)
Q Consensus        90 L~~LdLs~N~l~g~ip~~l~~-~-~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls  167 (595)
                      |++|+|++|+|+|.++..+.. . +|++|+|++|++++.++..+....|++|+|++|+|++.++..|..+ .+|++|+|+
T Consensus       151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~  229 (313)
T 1ogq_A          151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD-KNTQKIHLA  229 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTT-SCCSEEECC
T ss_pred             CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcC-CCCCEEECC
Confidence            999999999999999888876 4 8999999999999999988888779999999999999999999888 899999999


Q ss_pred             ccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEccccc-CCCC
Q 007628          168 NDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY-FTGE  246 (595)
Q Consensus       168 ~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~-Lsg~  246 (595)
                      +|++++.++. +..+.+|++|+|++|+|++.++.+|..+.+|++|+|++|+|+|.++.. .++.+|+.|+|++|. ++|.
T Consensus       230 ~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             SSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             CCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            9999977665 888999999999999999999999999999999999999999999876 889999999999998 6664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=5.5e-32  Score=313.57  Aligned_cols=240  Identities=29%  Similarity=0.508  Sum_probs=222.4

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      +.+|+.|+|++|++++.++..|+++.+|++|+|++|+|++.++..|+++.+|++|+|++|+|++.++..|.++.+|++|+
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence            66799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           95 LRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        95 Ls~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      |++|+|+|.++..+.. .+|++|+|++|++++.++.++.. .+|++|+|++|++++.++..++++ .+|++|+|++|.+.
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSLIWLDLNTNLFN  551 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTCCEEECCSSEEE
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCCCEEECCCCccC
Confidence            9999999999888776 89999999999999999988765 789999999999999999999998 89999999999988


Q ss_pred             CCCCCcc----------------------------------------------------------------------CCC
Q 007628          173 GCLPPQI----------------------------------------------------------------------GML  182 (595)
Q Consensus       173 g~ip~~~----------------------------------------------------------------------~~L  182 (595)
                      |.++.++                                                                      +.+
T Consensus       552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l  631 (768)
T 3rgz_A          552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNN  631 (768)
T ss_dssp             SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSS
T ss_pred             CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcc
Confidence            7776543                                                                      345


Q ss_pred             ccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccccC
Q 007628          183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAG  255 (595)
Q Consensus       183 ~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~~  255 (595)
                      .+|++|||++|+|+|.++++|++|.+|++|+|++|+|+|.++..|++|.+|+.|||++|+|+|.++.......
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~  704 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT  704 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence            7799999999999999999999999999999999999999999999999999999999999999997765543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=1.5e-30  Score=281.99  Aligned_cols=112  Identities=17%  Similarity=0.225  Sum_probs=67.5

Q ss_pred             eeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccC
Q 007628          137 SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAH  216 (595)
Q Consensus       137 ~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~  216 (595)
                      ++|+|++|++++.++..|+.+ .+|++|+|++|++.+..+..|+++.+|++|+|++|.|++..+..|+.+.+|++|+|++
T Consensus       278 ~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  356 (455)
T 3v47_A          278 KTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY  356 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCS
T ss_pred             eEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCC
Confidence            333333344443344444444 5566666666666665566666666666666666666655556666666666666666


Q ss_pred             CcCCCCCchhccCCCCCcEEEcccccCCCCCCc
Q 007628          217 NRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPS  249 (595)
Q Consensus       217 N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~  249 (595)
                      |+|++..+..|.++.+|++|+|++|+|++....
T Consensus       357 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  389 (455)
T 3v47_A          357 NHIRALGDQSFLGLPNLKELALDTNQLKSVPDG  389 (455)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             CcccccChhhccccccccEEECCCCccccCCHh
Confidence            666666566666666666666666666665443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=4.2e-30  Score=268.48  Aligned_cols=225  Identities=20%  Similarity=0.231  Sum_probs=196.4

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      ...|+.|+|++|+|+. ++..+++|.+|++|+|++|+|+ .++..|++|.+|++|+|++|+|+ .++..|.+|.+|++||
T Consensus        80 ~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            3579999999999984 6778999999999999999999 88999999999999999999999 7788999999999999


Q ss_pred             ccCCCCCCCCCcccc----------ccCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhH
Q 007628           95 LRFNEFEGSVPSKLF----------DKDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNE  163 (595)
Q Consensus        95 Ls~N~l~g~ip~~l~----------~~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~  163 (595)
                      |++|++.+.++..+.          ..+|++|+|++|+++ .++..+. ..+|++|+|++|+|++ ++..|+.+ .+|++
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l-~~L~~  233 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL-PKLEE  233 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGC-TTCCE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccC-CCCCE
Confidence            999999889988764          478999999999888 5555554 4678999999999885 55567777 78999


Q ss_pred             HHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccC
Q 007628          164 IILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF  243 (595)
Q Consensus       164 L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~L  243 (595)
                      |+|++|++.+.++..|+.+.+|++|+|++|++.+.++..|++|.+|++|+|++|.+.+.++..|++|.+|+.+++..|.+
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            99999988888888889999999999999888888888888999999999999998889999999999999998888776


Q ss_pred             CC
Q 007628          244 TG  245 (595)
Q Consensus       244 sg  245 (595)
                      ..
T Consensus       314 ~~  315 (328)
T 4fcg_A          314 AQ  315 (328)
T ss_dssp             CC
T ss_pred             HH
Confidence            54

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=3.3e-30  Score=279.23  Aligned_cols=237  Identities=19%  Similarity=0.264  Sum_probs=184.5

Q ss_pred             CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchh--hcCCCCCCEEeccCCcCCCcCchh-cCCCC
Q 007628           12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPST--FRRLKLLYEVDLSNNRFVGKFPKL-FLSLP   88 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~--~~~L~~L~~L~Ls~N~Lsg~lp~~-l~~L~   88 (595)
                      +.++.+|++|||++|+|+++.+..|+++.+|++|+|++|+|++.+...  |+++.+|++|+|++|+|++..+.. |.+++
T Consensus        75 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             TTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             ccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            456677777777777777766777777777777777777776644443  677777777777777777665554 67777


Q ss_pred             CCCEEEccCCCCCCCCCccccc-----------------------------------cCCCeeeccCC------------
Q 007628           89 KLKYLDLRFNEFEGSVPSKLFD-----------------------------------KDLDAIFLNDN------------  121 (595)
Q Consensus        89 ~L~~LdLs~N~l~g~ip~~l~~-----------------------------------~~L~~L~L~~N------------  121 (595)
                      +|++|||++|+|++.....+..                                   .+|++|+|++|            
T Consensus       155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence            7777777777776554432211                                   12444444444            


Q ss_pred             ---------------------------------------------------ccccCCCcccCC-CCceeEEeeccCCCCC
Q 007628          122 ---------------------------------------------------RFQFGIPENLGN-SPVSVLVFANNDLGGC  149 (595)
Q Consensus       122 ---------------------------------------------------~l~~~~p~~l~~-~~L~~L~L~~N~l~~~  149 (595)
                                                                         ++.+.++..+.. .+|++|+|++|+|++.
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  314 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI  314 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred             cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccccc
Confidence                                                               333333444433 6799999999999998


Q ss_pred             cCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccC
Q 007628          150 IPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ  229 (595)
Q Consensus       150 ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~  229 (595)
                      ....|..+ .+|++|+|++|++.+.....|+.+.+|++|||++|+|++..+.+|..+.+|++|+|++|+|++.....|..
T Consensus       315 ~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  393 (455)
T 3v47_A          315 DDNAFWGL-THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR  393 (455)
T ss_dssp             CTTTTTTC-TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred             ChhHhcCc-ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhcc
Confidence            88899888 89999999999999888899999999999999999999888999999999999999999999877778899


Q ss_pred             CCCCcEEEcccccCCCCCCc
Q 007628          230 LPNLQNFTYSFNYFTGEPPS  249 (595)
Q Consensus       230 l~~L~~L~Ls~N~Lsg~~p~  249 (595)
                      +.+|++|+|++|.|+|.++.
T Consensus       394 l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          394 LTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CTTCCEEECCSSCBCCCTTT
T ss_pred             CCcccEEEccCCCcccCCCc
Confidence            99999999999999998874

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=6.8e-31  Score=298.28  Aligned_cols=236  Identities=22%  Similarity=0.334  Sum_probs=184.1

Q ss_pred             CceecccCCCCCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcC----------------------------
Q 007628            1 MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRF----------------------------   52 (595)
Q Consensus         1 ~gv~C~~~~~~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l----------------------------   52 (595)
                      .||+|+..       .+|+.|+|++++++|.++.+|++|++|++|+|++|++                            
T Consensus        73 ~GV~C~~~-------~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l  145 (636)
T 4eco_A           73 PGVSLNSN-------GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY  145 (636)
T ss_dssp             TTEEECTT-------CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHH
T ss_pred             CCeEEcCC-------CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhH
Confidence            49999753       4788999999999988888999999999999988843                            


Q ss_pred             --------------------------------------------------CCCCchhhcCCCCCCEEeccCCcCCCc---
Q 007628           53 --------------------------------------------------CGVVPSTFRRLKLLYEVDLSNNRFVGK---   79 (595)
Q Consensus        53 --------------------------------------------------~~~lp~~~~~L~~L~~L~Ls~N~Lsg~---   79 (595)
                                                                        +| ++.+|++|++|++|+|++|+|+|.   
T Consensus       146 ~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~  224 (636)
T 4eco_A          146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENIC  224 (636)
T ss_dssp             HHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBS
T ss_pred             HHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccc
Confidence                                                              34 677788899999999999998875   


Q ss_pred             --------------CchhcC--CCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCc-ccc-CCCcccCC-------
Q 007628           80 --------------FPKLFL--SLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNR-FQF-GIPENLGN-------  133 (595)
Q Consensus        80 --------------lp~~l~--~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~-l~~-~~p~~l~~-------  133 (595)
                                    ++..|.  +|.+|++|+|++|+|.|.++..+.. .+|++|+|++|+ +++ .++..++.       
T Consensus       225 ~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l  304 (636)
T 4eco_A          225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVG  304 (636)
T ss_dssp             SSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGG
T ss_pred             ccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccC
Confidence                          788888  8889999999999888888877765 788888888887 777 66666544       


Q ss_pred             CCceeEEeeccCCCCCcCc--ccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCC-cc
Q 007628          134 SPVSVLVFANNDLGGCIPG--SIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKS-LE  210 (595)
Q Consensus       134 ~~L~~L~L~~N~l~~~ip~--~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~-L~  210 (595)
                      .+|++|+|++|+|+ .++.  .|+++ .+|++|+|++|++.|.++ .|+.+.+|++|+|++|+|+ .++..|+.+.+ |+
T Consensus       305 ~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~  380 (636)
T 4eco_A          305 EKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVE  380 (636)
T ss_dssp             GTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCC
T ss_pred             CCCCEEECCCCcCC-ccCchhhhccC-CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCc
Confidence            67888888888887 6776  77777 678888888888877777 7777777777777777777 67777777777 77


Q ss_pred             EEEccCCcCCCCCchhccCCC--CCcEEEcccccCCCCCCc
Q 007628          211 QLNVAHNRFTGVIPSSVCQLP--NLQNFTYSFNYFTGEPPS  249 (595)
Q Consensus       211 ~L~Ls~N~Lsg~iP~~l~~l~--~L~~L~Ls~N~Lsg~~p~  249 (595)
                      +|+|++|+|+ .++..+..+.  +|++|+|++|.|++.++.
T Consensus       381 ~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~  420 (636)
T 4eco_A          381 NLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK  420 (636)
T ss_dssp             EEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred             EEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence            7777777777 5666665544  677777777777765544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.9e-29  Score=274.39  Aligned_cols=229  Identities=20%  Similarity=0.206  Sum_probs=203.8

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      .+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++....|.+|.+|++|+|++|+|+++..+.|.+|.+|++|+|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            47999999999999999999999999999999999999998899999999999999999999887888999999999999


Q ss_pred             cCCCCCCCCCccccc--cCCCeeeccCCccccCCCc-cc-CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhcccc
Q 007628           96 RFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPE-NL-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL  171 (595)
Q Consensus        96 s~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~-~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l  171 (595)
                      ++|+|+ .++...+.  .+|++|+|++|+..+.+.. .+ ...+|++|+|++|+|++.  ..+..+ .+|++|+|++|+|
T Consensus       155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l-~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPL-VGLEELEMSGNHF  230 (452)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTC-TTCCEEECTTSCC
T ss_pred             CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--cccccc-ccccEEECcCCcC
Confidence            999998 44443333  7999999999665555544 23 347899999999999865  356666 7899999999999


Q ss_pred             CCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       172 ~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      .+..+..|.++.+|++|+|++|+|++.....|.++.+|++|+|++|+|++...+.|..+.+|+.|+|++|.|.++..
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            99989999999999999999999998889999999999999999999998888889999999999999999987643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=1.6e-29  Score=276.07  Aligned_cols=258  Identities=19%  Similarity=0.199  Sum_probs=169.4

Q ss_pred             CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628           11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL   90 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L   90 (595)
                      .+.++.+|+.|+|++|+|+++.+..|.+|.+|++|+|++|+|+++....|.+|.+|++|+|++|+|.+.....|.++.+|
T Consensus        51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  130 (477)
T 2id5_A           51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL  130 (477)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence            45677788888888888888777888888888888888888887666677888888888888888877777777777777


Q ss_pred             CEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCC--------------------
Q 007628           91 KYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGG--------------------  148 (595)
Q Consensus        91 ~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~--------------------  148 (595)
                      ++|+|++|+|++.....+.. .+|++|+|++|++++.....+. ..+|+.|+|.+|.+.+                    
T Consensus       131 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~  210 (477)
T 2id5_A          131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW  210 (477)
T ss_dssp             CEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred             CEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence            77777777776544433333 5666666666666543332222 2334444444444443                    


Q ss_pred             ----CcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCc
Q 007628          149 ----CIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIP  224 (595)
Q Consensus       149 ----~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP  224 (595)
                          .+...+... .+|++|+|++|++++.....|..+.+|++|+|++|.|++.....|.++.+|++|+|++|+|++..+
T Consensus       211 ~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (477)
T 2id5_A          211 PYLDTMTPNCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP  289 (477)
T ss_dssp             TTCCEECTTTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT
T ss_pred             ccccccCcccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH
Confidence                333333333 245556666666664433456777777777887777776666677777777888888777777777


Q ss_pred             hhccCCCCCcEEEcccccCCCCCCcccccc-CCCCcccccCCCCCC
Q 007628          225 SSVCQLPNLQNFTYSFNYFTGEPPSCTAAA-GGGGRMMAARPADCS  269 (595)
Q Consensus       225 ~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~-~~~~~~~~~~~~~c~  269 (595)
                      ..|.++.+|+.|+|++|+|++.....+... ......+.+|.+.|+
T Consensus       290 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             TTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             HHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            777777778888888887777655433221 223333444554443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2e-29  Score=259.41  Aligned_cols=231  Identities=18%  Similarity=0.219  Sum_probs=203.2

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCC--CchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGV--VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~--lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .+|+.|+|++|+|+++....|.++.+|++|+|++|+|+.+  +...+.++.+|++|+|++|+|. .++..|.++.+|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence            5799999999999987666789999999999999999843  3677889999999999999998 566779999999999


Q ss_pred             EccCCCCCCCCC-ccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCC-CcCcccccccchhhHHHhhcc
Q 007628           94 DLRFNEFEGSVP-SKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGG-CIPGSIGKMGKTLNEIILMND  169 (595)
Q Consensus        94 dLs~N~l~g~ip-~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~-~ip~~l~~l~~~L~~L~Ls~N  169 (595)
                      +|++|+|++... ..+.. .+|++|+|++|++.+.....+.. .+|++|+|++|.+++ .++..+..+ .+|++|+|++|
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n  185 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQC  185 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTS
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC-cCCCEEECCCC
Confidence            999999986544 22222 79999999999999887776654 789999999999987 577888887 89999999999


Q ss_pred             ccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCC-CCCcEEEcccccCCCCCC
Q 007628          170 NLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQL-PNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       170 ~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l-~~L~~L~Ls~N~Lsg~~p  248 (595)
                      ++.+..+..|..+.+|++|+|++|.|++.....|..+.+|++|+|++|+|++..+..+..+ .+|++|+|++|.|++...
T Consensus       186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            9998889999999999999999999997777789999999999999999999999999998 599999999999988643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=5.8e-29  Score=269.60  Aligned_cols=229  Identities=22%  Similarity=0.229  Sum_probs=202.2

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      .+++.|+|++|+|+++....|.++.+|++|+|++|+|+++...+|.+|.+|++|+|++|+|+++..+.|.++.+|++|+|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            56899999999999998899999999999999999999988899999999999999999999777778999999999999


Q ss_pred             cCCCCCCCCCccccc-cCCCeeeccCCccccCCCc-cc-CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPE-NL-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~-~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      ++|+|++.....+.. .+|++|+|++|+..+.+.. .+ ...+|++|+|++|+|+.. + .+..+ .+|++|+|++|+|+
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l-~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPL-IKLDELDLSGNHLS  220 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTC-SSCCEEECTTSCCC
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCC-cccCEEECCCCccC
Confidence            999998443333333 7999999999665555544 33 347899999999999843 3 46666 78999999999999


Q ss_pred             CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP  247 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~  247 (595)
                      +..+..|.++.+|++|+|++|+|++....+|.++.+|++|+|++|+|++...+.|..+.+|+.|+|++|.|.++.
T Consensus       221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred             ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCC
Confidence            988999999999999999999999888999999999999999999999888888999999999999999998653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=2.7e-29  Score=274.36  Aligned_cols=237  Identities=16%  Similarity=0.133  Sum_probs=189.1

Q ss_pred             CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628           11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL   90 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L   90 (595)
                      .+.++.+|+.|+|++|+|+++....|.++.+|++|+|++|+|.++....|.++.+|++|+|++|+|+++....|.++.+|
T Consensus        75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  154 (477)
T 2id5_A           75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSL  154 (477)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTC
T ss_pred             hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCC
Confidence            45677888888888888887766677888888888888888887777788888888888888888877777777778888


Q ss_pred             CEEEccCCCCCCCCCccccc-cCCCeeeccCCccccC------------------------CCcc-cCCCCceeEEeecc
Q 007628           91 KYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFG------------------------IPEN-LGNSPVSVLVFANN  144 (595)
Q Consensus        91 ~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~------------------------~p~~-l~~~~L~~L~L~~N  144 (595)
                      ++|+|++|+|++.....+.. .+|+.|+|++|++.+.                        +... +...+|++|+|++|
T Consensus       155 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n  234 (477)
T 2id5_A          155 EQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC  234 (477)
T ss_dssp             CEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred             CEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC
Confidence            88888888777433222222 4566666655555433                        2222 22247888999999


Q ss_pred             CCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCc
Q 007628          145 DLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIP  224 (595)
Q Consensus       145 ~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP  224 (595)
                      +|++.....|..+ .+|++|+|++|.|.+.....|..+.+|++|+|++|+|++..+.+|.++.+|++|+|++|+|++...
T Consensus       235 ~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  313 (477)
T 2id5_A          235 NLTAVPYLAVRHL-VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE  313 (477)
T ss_dssp             CCCSCCHHHHTTC-TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCG
T ss_pred             cccccCHHHhcCc-cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCH
Confidence            9986555667777 899999999999998888899999999999999999999889999999999999999999998888


Q ss_pred             hhccCCCCCcEEEcccccCCCCCC
Q 007628          225 SSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       225 ~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      ..|..+.+|+.|+|++|.|++...
T Consensus       314 ~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          314 SVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             GGBSCGGGCCEEECCSSCEECSGG
T ss_pred             hHcCCCcccCEEEccCCCccCccc
Confidence            889999999999999999987643

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.6e-29  Score=265.78  Aligned_cols=242  Identities=19%  Similarity=0.241  Sum_probs=197.2

Q ss_pred             cccCCCCCCCC-----CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc
Q 007628            5 CARSPFNSPSL-----RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK   79 (595)
Q Consensus         5 C~~~~~~~~~l-----~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~   79 (595)
                      |++...+...+     .+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++....|+++.+|++|+|++|+|++.
T Consensus        36 c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  115 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL  115 (353)
T ss_dssp             EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred             eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence            66554443333     4799999999999998877899999999999999999998889999999999999999999977


Q ss_pred             CchhcCCCCCCCEEEccCCCCCCCCCc-ccc--ccCCCeeeccCCc-cccCCCcccC-CCCceeEEeeccCCCCCcCccc
Q 007628           80 FPKLFLSLPKLKYLDLRFNEFEGSVPS-KLF--DKDLDAIFLNDNR-FQFGIPENLG-NSPVSVLVFANNDLGGCIPGSI  154 (595)
Q Consensus        80 lp~~l~~L~~L~~LdLs~N~l~g~ip~-~l~--~~~L~~L~L~~N~-l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l  154 (595)
                      ....|.++.+|++|||++|+|+ .++. ..+  ..+|++|+|++|+ +.+.....+. ..+|++|+|++|++++..+..|
T Consensus       116 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  194 (353)
T 2z80_A          116 SSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL  194 (353)
T ss_dssp             CHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             CHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence            6777999999999999999998 4554 333  2899999999995 5544444454 4689999999999999889999


Q ss_pred             ccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCC-------------------------------CCc
Q 007628          155 GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLP-------------------------------SSI  203 (595)
Q Consensus       155 ~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP-------------------------------~~l  203 (595)
                      ..+ .+|++|+|++|++.......+..+.+|++|+|++|.|++...                               +.|
T Consensus       195 ~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l  273 (353)
T 2z80_A          195 KSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL  273 (353)
T ss_dssp             TTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred             hcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence            988 789999999999864433344568899999999999986432                               235


Q ss_pred             CCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          204 GNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       204 ~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      ..+.+|++|+|++|+|++.....|.++.+|++|+|++|.|+|...
T Consensus       274 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             HTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             hcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            677889999999999984433446888999999999999988754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=6.1e-29  Score=253.40  Aligned_cols=227  Identities=16%  Similarity=0.182  Sum_probs=198.4

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF   97 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~   97 (595)
                      .+.+++++++++.+ +..  ...+|++|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|||++
T Consensus        13 ~~~~~c~~~~l~~i-p~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           13 KVTTSCPQQGLQAV-PVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SCEEECCSSCCSSC-CTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCcCCcccC-CcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            36889999998874 433  356899999999999988888899999999999999999988888999999999999999


Q ss_pred             CC-CCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCC
Q 007628           98 NE-FEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC  174 (595)
Q Consensus        98 N~-l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~  174 (595)
                      |+ +++.....+.. .+|++|+|++|++++.....+. ..+|++|+|++|+|++.....|.++ .+|++|+|++|++++.
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISSV  168 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCEE
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccC-CCccEEECCCCccccc
Confidence            97 66443444443 7899999999999987776665 4789999999999998777778877 8999999999999977


Q ss_pred             CCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       175 ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      ....|..+.+|++|+|++|.|++..+..|.++.+|++|+|++|+|++.....|..+.+|++|+|++|.|++...
T Consensus       169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            77789999999999999999998889999999999999999999998877889999999999999999987644

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=4.4e-28  Score=252.65  Aligned_cols=229  Identities=18%  Similarity=0.245  Sum_probs=190.5

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      .+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++.+.+|++|.+|++|+|++|+|+ .++..+.  .+|++|+|
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEEC
Confidence            46888999999888877778888999999999999998888888899999999999999888 4454443  78899999


Q ss_pred             cCCCCCCCCCccccc-cCCCeeeccCCcccc--CCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQF--GIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~--~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      ++|+|++.....+.. .+|++|+|++|+++.  .....+...+|++|++++|++++ ++..+.   .+|++|+|++|++.
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~---~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP---ETLNELHLDHNKIQ  206 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC---SSCSCCBCCSSCCC
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc---CCCCEEECCCCcCC
Confidence            999888444333333 789999999998853  55566665688899999998886 455443   57999999999999


Q ss_pred             CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcccc
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTA  252 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~  252 (595)
                      +.....|..+.+|++|+|++|.|++.....|+.+.+|++|+|++|+|+ .++..+.++.+|++|+|++|+|++.....++
T Consensus       207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence            888889999999999999999999888888999999999999999998 7888899999999999999999987665443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=2.9e-29  Score=292.86  Aligned_cols=237  Identities=20%  Similarity=0.319  Sum_probs=207.0

Q ss_pred             CceecccCCCCCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEc-cCCcCCCC------------------------
Q 007628            1 MGVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHI-NSNRFCGV------------------------   55 (595)
Q Consensus         1 ~gv~C~~~~~~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~L-s~N~l~~~------------------------   55 (595)
                      .||+|++.       .+|+.|+|++++|.|.++.+|++|++|++|+| ++|.|.|.                        
T Consensus       315 ~GV~C~~~-------~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~  387 (876)
T 4ecn_A          315 PGVDLDNN-------GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY  387 (876)
T ss_dssp             TTEEECTT-------SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHH
T ss_pred             CceEecCC-------CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhh
Confidence            48999762       47999999999999999999999999999999 77754333                        


Q ss_pred             ----------------------------------------------------CchhhcCCCCCCEEeccCCcCCC-----
Q 007628           56 ----------------------------------------------------VPSTFRRLKLLYEVDLSNNRFVG-----   78 (595)
Q Consensus        56 ----------------------------------------------------lp~~~~~L~~L~~L~Ls~N~Lsg-----   78 (595)
                                                                          ++.+|++|.+|++|+|++|+|+|     
T Consensus       388 ~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~  467 (876)
T 4ecn_A          388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV  467 (876)
T ss_dssp             HHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSS
T ss_pred             hhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccc
Confidence                                                                77889999999999999999998     


Q ss_pred             ------------cCchhcC--CCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCc-ccc-CCCcccCC--------
Q 007628           79 ------------KFPKLFL--SLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNR-FQF-GIPENLGN--------  133 (595)
Q Consensus        79 ------------~lp~~l~--~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~-l~~-~~p~~l~~--------  133 (595)
                                  .++..|.  +|.+|++|+|++|+|.|.++..+.. .+|++|+|++|+ +++ .++..++.        
T Consensus       468 ~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l  547 (876)
T 4ecn_A          468 DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG  547 (876)
T ss_dssp             SCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTT
T ss_pred             cccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccccc
Confidence                        3888877  9999999999999999999987776 799999999998 887 66654432        


Q ss_pred             CCceeEEeeccCCCCCcCc--ccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCC-cc
Q 007628          134 SPVSVLVFANNDLGGCIPG--SIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKS-LE  210 (595)
Q Consensus       134 ~~L~~L~L~~N~l~~~ip~--~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~-L~  210 (595)
                      .+|++|+|++|+|+ .++.  .|+++ .+|++|+|++|+|. .++ .|+.|.+|++|+|++|.|+ .++..|..+.+ |+
T Consensus       548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L-~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~  622 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE-EFPASASLQKM-VKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE  622 (876)
T ss_dssp             TTCCEEECCSSCCC-BCCCHHHHTTC-TTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred             CCccEEEeeCCcCC-ccCChhhhhcC-CCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence            47999999999999 7888  88888 79999999999998 777 8999999999999999999 88989999998 99


Q ss_pred             EEEccCCcCCCCCchhccCCCC--CcEEEcccccCCCCCCcc
Q 007628          211 QLNVAHNRFTGVIPSSVCQLPN--LQNFTYSFNYFTGEPPSC  250 (595)
Q Consensus       211 ~L~Ls~N~Lsg~iP~~l~~l~~--L~~L~Ls~N~Lsg~~p~~  250 (595)
                      +|+|++|+|+ .++..+..+..  |+.|+|++|+|+|.++..
T Consensus       623 ~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l  663 (876)
T 4ecn_A          623 GLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI  663 (876)
T ss_dssp             EEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSC
T ss_pred             EEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccc
Confidence            9999999998 77888877654  999999999998876543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=3.5e-28  Score=258.83  Aligned_cols=106  Identities=19%  Similarity=0.207  Sum_probs=61.1

Q ss_pred             ceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEcc
Q 007628          136 VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVA  215 (595)
Q Consensus       136 L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls  215 (595)
                      |++|+|++|++++.  ..+..+ .+|++|+|++|.+.+..+..|..+.+|++|+|++|+|++ ++..+..+.+|++|+|+
T Consensus       228 L~~L~l~~n~l~~~--~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~  303 (390)
T 3o6n_A          228 LTILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLS  303 (390)
T ss_dssp             CCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECC
T ss_pred             ccEEECCCCCCccc--HHHcCC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECC
Confidence            33444444444332  233344 456666666666666556666666666666666666663 44445556666666666


Q ss_pred             CCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          216 HNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       216 ~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      +|+|+ .++..+..+.+|++|+|++|.|+..
T Consensus       304 ~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          304 HNHLL-HVERNQPQFDRLENLYLDHNSIVTL  333 (390)
T ss_dssp             SSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             CCcce-ecCccccccCcCCEEECCCCcccee
Confidence            66666 3445555666666666666666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=5.5e-28  Score=252.42  Aligned_cols=213  Identities=18%  Similarity=0.239  Sum_probs=195.8

Q ss_pred             CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc-cCCCee
Q 007628           38 RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAI  116 (595)
Q Consensus        38 ~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L  116 (595)
                      ...+|+.|+|++|+|+ .++..|++|.+|++|+|++|+|+ .++..|.+|.+|++|||++|+|+ .++..+.. .+|++|
T Consensus        79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            4578999999999999 67888999999999999999999 88899999999999999999999 77777665 899999


Q ss_pred             eccCCccccCCCcccC----------CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccce
Q 007628          117 FLNDNRFQFGIPENLG----------NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLT  186 (595)
Q Consensus       117 ~L~~N~l~~~~p~~l~----------~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~  186 (595)
                      +|++|++.+.++..+.          ..+|++|+|++|+|+ .++..|+.+ .+|++|+|++|++.+ ++.+|+.|.+|+
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~  232 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLE  232 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC-TTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC-CCCCEEEccCCCCCc-CchhhccCCCCC
Confidence            9999999999888775          678999999999999 788889888 899999999999995 667899999999


Q ss_pred             EEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccccCC
Q 007628          187 VFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAAGG  256 (595)
Q Consensus       187 ~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~~~  256 (595)
                      +|+|++|++.+.++..|+.+.+|++|+|++|++.+.++..|.++.+|++|+|++|++.+.++........
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence            9999999999999999999999999999999999999999999999999999999999999987666543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=4.3e-28  Score=272.37  Aligned_cols=255  Identities=16%  Similarity=0.225  Sum_probs=150.7

Q ss_pred             CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCch-hcCCCCCC
Q 007628           12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPK-LFLSLPKL   90 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~-~l~~L~~L   90 (595)
                      +.++.+|+.|+|++|+|+. ++..|.++.+|++|+|++|+|.++.+..|.++.+|++|+|++|++.+.++. .|.++.+|
T Consensus       274 ~~~l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             hccccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            4556667777777777663 555666677777777777776665555666666666666666655544332 34555555


Q ss_pred             CEEEccCCCCCC--------------------------CCCccccc-cCCCeeeccCCccccCCCcc-c-CCCCceeEEe
Q 007628           91 KYLDLRFNEFEG--------------------------SVPSKLFD-KDLDAIFLNDNRFQFGIPEN-L-GNSPVSVLVF  141 (595)
Q Consensus        91 ~~LdLs~N~l~g--------------------------~ip~~l~~-~~L~~L~L~~N~l~~~~p~~-l-~~~~L~~L~L  141 (595)
                      ++|||++|+|++                          ..+..+.. .+|++|+|++|++.+..... + ...+|++|+|
T Consensus       353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  432 (606)
T 3t6q_A          353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL  432 (606)
T ss_dssp             CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred             CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence            555555555543                          32222222 44555555555555443322 2 2245666666


Q ss_pred             eccCCCCCcCcccccccchhhHHHhhccccCCC---CCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCc
Q 007628          142 ANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC---LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNR  218 (595)
Q Consensus       142 ~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~---ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~  218 (595)
                      ++|.+++.....|+.+ .+|++|+|++|++.+.   ....|..+.+|++|+|++|+|++..+.+|+.+.+|++|+|++|+
T Consensus       433 ~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          433 SHSLLDISSEQLFDGL-PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR  511 (606)
T ss_dssp             TTCCCBTTCTTTTTTC-TTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCccCCcCHHHHhCC-CCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence            6666666555556555 5666666666666542   22456666677777777777766666677777777777777777


Q ss_pred             CCCCCchhccCCCCCcEEEcccccCCCCCCcccccc-CCCCcccccCCCCCC
Q 007628          219 FTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAA-GGGGRMMAARPADCS  269 (595)
Q Consensus       219 Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~-~~~~~~~~~~~~~c~  269 (595)
                      |++.+++.|.++.+| .|||++|+|++.++...... ......+.+|.+.|+
T Consensus       512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred             cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence            777777777777777 77777777776665433222 223334555555553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=1.4e-27  Score=248.34  Aligned_cols=229  Identities=19%  Similarity=0.250  Sum_probs=189.4

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      ..|+.|+|++|+|+++....|+++.+|++|+|++|+|+++.+..|++|.+|++|+|++|+|+ .++..+.  .+|++|+|
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence            46888999999998887778899999999999999999888888999999999999999988 4454443  68999999


Q ss_pred             cCCCCCCCCCccccc-cCCCeeeccCCcccc--CCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhcccc
Q 007628           96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQF--GIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL  171 (595)
Q Consensus        96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~--~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l  171 (595)
                      ++|+|++.....+.. .+|++|+|++|++..  .....+. ..+|++|++++|+++. ++..+.   .+|++|+|++|++
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~---~~L~~L~l~~n~l  204 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP---PSLTELHLDGNKI  204 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC---TTCSEEECTTSCC
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc---ccCCEEECCCCcC
Confidence            999988544433333 789999999998863  3444443 4689999999999885 444443   6799999999999


Q ss_pred             CCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccc
Q 007628          172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCT  251 (595)
Q Consensus       172 ~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~  251 (595)
                      .+.....|..+.+|++|+|++|.|++.....|..+.+|++|+|++|+|+ .++..+..+.+|++|+|++|+|++.....+
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f  283 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF  283 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence            9888889999999999999999999887788999999999999999998 778889999999999999999998766544


Q ss_pred             c
Q 007628          252 A  252 (595)
Q Consensus       252 ~  252 (595)
                      +
T Consensus       284 ~  284 (330)
T 1xku_A          284 C  284 (330)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=8.7e-28  Score=261.23  Aligned_cols=248  Identities=17%  Similarity=0.162  Sum_probs=207.6

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      ....++.++++++. ++..+.  .+|++|+|++|+|+++..+.|.+|.+|++|+|++|+|+++....|.+|.+|++|||+
T Consensus        55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            45678999998886 455443  689999999999999999999999999999999999998888999999999999999


Q ss_pred             CCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCc-ccccccchhhHHHhhccccCC
Q 007628           97 FNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPG-SIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        97 ~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~-~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      +|+|++.....+.. .+|++|+|++|+++......+. ..+|++|+|++|+..+.+.. .|..+ .+|++|+|++|++++
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l-~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGL-FNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC-TTCCEEECTTSCCSS
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCC-CCCCEEECCCCcccc
Confidence            99999544443333 7999999999999866555554 47899999999655555554 46666 899999999999986


Q ss_pred             CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccc
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAA  253 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~  253 (595)
                      .  ..|..+.+|++|+|++|.|++..+..|.++.+|++|+|++|+|++.....|.++.+|+.|||++|+|++........
T Consensus       211 ~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  288 (452)
T 3zyi_A          211 M--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP  288 (452)
T ss_dssp             C--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred             c--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence            4  46889999999999999999888999999999999999999999988999999999999999999999877665443


Q ss_pred             cC-CCCcccccCCCCCCC
Q 007628          254 AG-GGGRMMAARPADCSK  270 (595)
Q Consensus       254 ~~-~~~~~~~~~~~~c~~  270 (595)
                      .. .....+.+|.+.|++
T Consensus       289 l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          289 LRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             CTTCCEEECCSSCEECST
T ss_pred             ccCCCEEEccCCCcCCCC
Confidence            32 344456777777763

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=1.2e-27  Score=259.25  Aligned_cols=248  Identities=18%  Similarity=0.199  Sum_probs=207.7

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      .++.++.++++++. ++..+.  .+|+.|+|++|+|+++....|.+|.+|++|+|++|+|+++....|.+|.+|++|||+
T Consensus        44 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            35678999998886 555554  689999999999999988999999999999999999998888999999999999999


Q ss_pred             CCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCc-ccccccchhhHHHhhccccCC
Q 007628           97 FNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPG-SIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        97 ~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~-~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      +|+|++.....+.. .+|++|+|++|+++......+. ..+|++|+|++|+..+.+.. .|..+ .+|++|+|++|+|+.
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l-~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL-SNLRYLNLAMCNLRE  199 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC-SSCCEEECTTSCCSS
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc-cccCeecCCCCcCcc
Confidence            99999544433333 8999999999999866655554 47899999999655555554 56666 899999999999984


Q ss_pred             CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccc
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAA  253 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~  253 (595)
                       ++ .|..+.+|++|||++|+|++..+..|.++.+|++|+|++|+|++.....|.++.+|+.|||++|+|++.....+..
T Consensus       200 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  277 (440)
T 3zyj_A          200 -IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP  277 (440)
T ss_dssp             -CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred             -cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence             44 5889999999999999999888999999999999999999999988899999999999999999999877665443


Q ss_pred             c-CCCCcccccCCCCCCC
Q 007628          254 A-GGGGRMMAARPADCSK  270 (595)
Q Consensus       254 ~-~~~~~~~~~~~~~c~~  270 (595)
                      . ......+.+|.+.|++
T Consensus       278 l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          278 LHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             CTTCCEEECCSSCEECSS
T ss_pred             ccCCCEEEcCCCCccCCC
Confidence            3 2344556777777764

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.4e-28  Score=250.26  Aligned_cols=247  Identities=21%  Similarity=0.270  Sum_probs=206.2

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc--CchhcCCCCCCCEEEc
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK--FPKLFLSLPKLKYLDL   95 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~--lp~~l~~L~~L~~LdL   95 (595)
                      .+.+++++++++.+ +..+  ..+|++|+|++|+|+++....|+++.+|++|+|++|+|+..  +...+.++.+|++|||
T Consensus         9 ~~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A            9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TTEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CCEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            45789999998874 4433  36899999999999976666789999999999999999833  3567778999999999


Q ss_pred             cCCCCCCCCCccccc-cCCCeeeccCCccccCCC--cccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIP--ENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p--~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      ++|+|+ .++..+.. .+|++|+|++|++++...  .+....+|++|+|++|.+++.....|..+ .+|++|+|++|.+.
T Consensus        86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~  163 (306)
T 2z66_A           86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQ  163 (306)
T ss_dssp             CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC-TTCCEEECTTCEEG
T ss_pred             CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC-cCCCEEECCCCccc
Confidence            999998 45544443 899999999999987654  33345789999999999998888888888 89999999999998


Q ss_pred             C-CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccc
Q 007628          173 G-CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCT  251 (595)
Q Consensus       173 g-~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~  251 (595)
                      + .++..|..+.+|++|+|++|+|++..+..|..+.+|++|+|++|+|++.....|.++.+|++|||++|+|++......
T Consensus       164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  243 (306)
T 2z66_A          164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL  243 (306)
T ss_dssp             GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred             cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence            7 678899999999999999999998889999999999999999999998877789999999999999999999877654


Q ss_pred             ccc--CCCCcccccCCCCCC
Q 007628          252 AAA--GGGGRMMAARPADCS  269 (595)
Q Consensus       252 ~~~--~~~~~~~~~~~~~c~  269 (595)
                      ...  ......+.+|.+.|+
T Consensus       244 ~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          244 QHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCCCTTCCEEECTTCCEECS
T ss_pred             HhhhccCCEEEccCCCeecc
Confidence            443  233344555555553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=4.5e-27  Score=245.01  Aligned_cols=227  Identities=16%  Similarity=0.241  Sum_probs=199.4

Q ss_pred             CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628           11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL   90 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L   90 (595)
                      .+.++.+|+.|+|++|+|+++.+..|+++.+|++|+|++|+|+. ++..+.  .+|++|+|++|+|++.....|.++.+|
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM  149 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred             HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence            46788999999999999999989999999999999999999994 555444  899999999999998777889999999


Q ss_pred             CEEEccCCCCCC--CCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhc
Q 007628           91 KYLDLRFNEFEG--SVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMN  168 (595)
Q Consensus        91 ~~LdLs~N~l~g--~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~  168 (595)
                      ++|+|++|.++.  .....+...+|++|+|++|++++ ++..+. .+|++|+|++|++++.....|..+ .+|++|+|++
T Consensus       150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l-~~L~~L~L~~  226 (332)
T 2ft3_A          150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP-ETLNELHLDHNKIQAIELEDLLRY-SKLYRLGLGH  226 (332)
T ss_dssp             CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCSSSC-SSCSCCBCCSSCCCCCCTTSSTTC-TTCSCCBCCS
T ss_pred             CEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCcccc-CCCCEEECCCCcCCccCHHHhcCC-CCCCEEECCC
Confidence            999999999963  44444433589999999999986 444443 689999999999999888889888 8999999999


Q ss_pred             cccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCC------CCCcEEEccccc
Q 007628          169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQL------PNLQNFTYSFNY  242 (595)
Q Consensus       169 N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l------~~L~~L~Ls~N~  242 (595)
                      |++.+.....|+.+.+|++|+|++|+|+ .++..|..+.+|++|+|++|+|++.....|..+      .+|+.|+|++|.
T Consensus       227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          227 NQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             SCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             CcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence            9999988889999999999999999999 888999999999999999999998766666653      679999999999


Q ss_pred             CC
Q 007628          243 FT  244 (595)
Q Consensus       243 Ls  244 (595)
                      +.
T Consensus       306 ~~  307 (332)
T 2ft3_A          306 VP  307 (332)
T ss_dssp             SC
T ss_pred             cc
Confidence            87

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=1.6e-27  Score=267.76  Aligned_cols=231  Identities=17%  Similarity=0.242  Sum_probs=165.6

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      ..++.|||++|+|+++.+.+|+++++|++|+|++|+|.++.+++|++|.+|++|+|++|+|++..+..|.++.+|++|||
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            35788888888888877778888888888888888888777788888888888888888888777777888888888888


Q ss_pred             cCCCCCCCCCccccc-cCCCeeeccCCcccc-CCCcccCCCCceeEEeeccCCCCCcCcccccccc--------------
Q 007628           96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQF-GIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGK--------------  159 (595)
Q Consensus        96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~-~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~--------------  159 (595)
                      ++|+|++.....+.. .+|++|+|++|++.+ .++.++...+|++|+|++|.+++...+.|+.+ .              
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL-QQATNLSLNLNGNDI  191 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT-TTCCSEEEECTTCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhh-cccceeEEecCCCcc
Confidence            888877543333333 677777777777775 33555555666667666666665444433333 2              


Q ss_pred             ---------------------------------------------------------------hhhHHHhhccccCCCCC
Q 007628          160 ---------------------------------------------------------------TLNEIILMNDNLTGCLP  176 (595)
Q Consensus       160 ---------------------------------------------------------------~L~~L~Ls~N~l~g~ip  176 (595)
                                                                                     +|++|++++|++.+...
T Consensus       192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~  271 (606)
T 3t6q_A          192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS  271 (606)
T ss_dssp             CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred             CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence                                                                           34455555566665555


Q ss_pred             CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      ..|+.+.+|++|+|++|+|+ .+++.|.++.+|++|+|++|+|++..+..+.++.+|++|+|++|.+.+.+.
T Consensus       272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  342 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG  342 (606)
T ss_dssp             TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred             HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence            56777778888888888877 677777888888888888888877666777777777777777777765544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=3e-28  Score=276.48  Aligned_cols=229  Identities=14%  Similarity=0.226  Sum_probs=170.1

Q ss_pred             CCCCCceeEEEccCCCCCCC-----------------Cchhhc--CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEecc
Q 007628           12 SPSLRVVASIDLNHADIAGY-----------------LPPEIG--RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLS   72 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~-----------------lp~~~~--~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls   72 (595)
                      +.++.+|++|+|++|+|++.                 ++..|+  +|++|++|+|++|++.+.++.+|++|.+|++|+|+
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  281 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA  281 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence            45677888888888888885                 777877  88888888888888888888888888888888888


Q ss_pred             CCc-CCC-cCchhcCCC------CCCCEEEccCCCCCCCCCc--cccc-cCCCeeeccCCccccCCCcccCCCCceeEEe
Q 007628           73 NNR-FVG-KFPKLFLSL------PKLKYLDLRFNEFEGSVPS--KLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVF  141 (595)
Q Consensus        73 ~N~-Lsg-~lp~~l~~L------~~L~~LdLs~N~l~g~ip~--~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L  141 (595)
                      +|+ |+| .++..|.+|      .+|++|+|++|+|+ .++.  .+.. .+|++|+|++|+++|.++.+....+|++|+|
T Consensus       282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L  360 (636)
T 4eco_A          282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL  360 (636)
T ss_dssp             TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEEC
T ss_pred             CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEEC
Confidence            887 887 677777665      78888888888887 6766  4444 6788888888888877773333356777777


Q ss_pred             eccCCCCCcCcccccccch-hhHHHhhccccCCCCCCccCCCc--cceEEeccCccccCCCCCCcC-------CCCCccE
Q 007628          142 ANNDLGGCIPGSIGKMGKT-LNEIILMNDNLTGCLPPQIGMLK--NLTVFDVSFNHLQGSLPSSIG-------NMKSLEQ  211 (595)
Q Consensus       142 ~~N~l~~~ip~~l~~l~~~-L~~L~Ls~N~l~g~ip~~~~~L~--~L~~LdLs~N~L~g~lP~~l~-------~L~~L~~  211 (595)
                      ++|+|+ .++..|+.+ .+ |++|+|++|+++ .++..|+.+.  +|++|+|++|.|++.+++.|.       .+.+|++
T Consensus       361 ~~N~l~-~lp~~l~~l-~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~  437 (636)
T 4eco_A          361 AYNQIT-EIPANFCGF-TEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS  437 (636)
T ss_dssp             CSSEEE-ECCTTSEEE-CTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred             CCCccc-cccHhhhhh-cccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence            777777 666777777 45 777777777777 6666666654  777777777777777777666       6667777


Q ss_pred             EEccCCcCCCCCchhccCCCCCcEEEcccccCC
Q 007628          212 LNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT  244 (595)
Q Consensus       212 L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Ls  244 (595)
                      |+|++|+|++.....+..+.+|++|+|++|+|+
T Consensus       438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             EECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            777777777443344555777777777777776

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=1.3e-27  Score=269.21  Aligned_cols=227  Identities=19%  Similarity=0.204  Sum_probs=130.1

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      .+|++|+|++|+|+++....|+++.+|+.|+|++|.|+++....|++|.+|++|+|++|+|+++....|.++.+|++|+|
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            44555555555555554445555555555555555555555555555555555555555555444444455555555555


Q ss_pred             cCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC--------------------------------------CCCc
Q 007628           96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG--------------------------------------NSPV  136 (595)
Q Consensus        96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~--------------------------------------~~~L  136 (595)
                      ++|.|++..+..+.. .+|++|+|++|++.+.....+.                                      ..+|
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L  234 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL  234 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCC
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCC
Confidence            555555444333322 4555555555554432111100                                      0124


Q ss_pred             eeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccC
Q 007628          137 SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAH  216 (595)
Q Consensus       137 ~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~  216 (595)
                      ++|+|++|.|++.  ..++.+ .+|++|+|++|.|.+.++..|+.|.+|++|+|++|.|++ ++..+..+.+|++|+|++
T Consensus       235 ~~L~L~~n~l~~~--~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~  310 (597)
T 3oja_B          235 TILKLQHNNLTDT--AWLLNY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSH  310 (597)
T ss_dssp             CEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCS
T ss_pred             CEEECCCCCCCCC--hhhccC-CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCC
Confidence            4444444544432  344444 567777777777777777777777777777777777774 455566677777777777


Q ss_pred             CcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628          217 NRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP  247 (595)
Q Consensus       217 N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~  247 (595)
                      |.|+ .++..+..+.+|+.|+|++|.|++..
T Consensus       311 N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~  340 (597)
T 3oja_B          311 NHLL-HVERNQPQFDRLENLYLDHNSIVTLK  340 (597)
T ss_dssp             SCCC-CCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             CCCC-ccCcccccCCCCCEEECCCCCCCCcC
Confidence            7777 45566677777777777777776653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.8e-28  Score=247.51  Aligned_cols=234  Identities=19%  Similarity=0.225  Sum_probs=201.1

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCc-CCCcCchhcCCCCCCCEE
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR-FVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~-Lsg~lp~~l~~L~~L~~L   93 (595)
                      ..+|+.|+|++|+|+++..+.|.++.+|++|+|++|+|+++...+|.++.+|++|+|++|+ +.+.....|.++.+|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            4579999999999999888889999999999999999999889999999999999999997 887768899999999999


Q ss_pred             EccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhcccc
Q 007628           94 DLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL  171 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l  171 (595)
                      +|++|+|++.....+.. .+|++|+|++|++++.....+. ..+|++|+|++|+|++.....|..+ .+|++|+|++|++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l  189 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRV  189 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCc-cccCEEECCCCcc
Confidence            99999999766655544 8999999999999977666554 4789999999999997777778877 8999999999999


Q ss_pred             CCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcc
Q 007628          172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSC  250 (595)
Q Consensus       172 ~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~  250 (595)
                      .+..+..|..+.+|++|+|++|+|++...+.|..+.+|++|+|++|.|.+..... ..+..|+.++++.|.+.+..+..
T Consensus       190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            9998999999999999999999999776677999999999999999998754321 11233556667777777665543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=4.4e-27  Score=263.63  Aligned_cols=110  Identities=23%  Similarity=0.281  Sum_probs=89.0

Q ss_pred             hhHHHhhcccc-CCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcc
Q 007628          161 LNEIILMNDNL-TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYS  239 (595)
Q Consensus       161 L~~L~Ls~N~l-~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls  239 (595)
                      |++|+|++|++ .+.+++.|..+.+|++|||++|+|++..+.+|.+|.+|++|+|++|+|++.....|.++.+|++|||+
T Consensus       471 L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls  550 (635)
T 4g8a_A          471 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  550 (635)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECT
T ss_pred             hhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECC
Confidence            44455555543 33466778889999999999999998889999999999999999999999888899999999999999


Q ss_pred             cccCCCCCCcccccc--CCCCcccccCCCCCCC
Q 007628          240 FNYFTGEPPSCTAAA--GGGGRMMAARPADCSK  270 (595)
Q Consensus       240 ~N~Lsg~~p~~~~~~--~~~~~~~~~~~~~c~~  270 (595)
                      +|+|++..+......  ......+.+|++.|++
T Consensus       551 ~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          551 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             TSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            999999888766543  2344557778888863

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=7e-27  Score=243.16  Aligned_cols=228  Identities=16%  Similarity=0.237  Sum_probs=199.4

Q ss_pred             CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628           11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL   90 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L   90 (595)
                      .+.++.+|++|+|++|+|+++.+..|+++.+|++|+|++|+|+. ++..+.  .+|++|+|++|+|++.....|.++.+|
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L  147 (330)
T 1xku_A           71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQM  147 (330)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred             hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccc
Confidence            35678999999999999999989999999999999999999984 555443  799999999999998888899999999


Q ss_pred             CEEEccCCCCCC--CCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhh
Q 007628           91 KYLDLRFNEFEG--SVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILM  167 (595)
Q Consensus        91 ~~LdLs~N~l~g--~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls  167 (595)
                      ++|+|++|+++.  .....+.. .+|++|+|++|+++. ++..+. .+|++|+|++|++++.....|..+ .+|++|+|+
T Consensus       148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls  224 (330)
T 1xku_A          148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP-PSLTELHLDGNKITKVDAASLKGL-NNLAKLGLS  224 (330)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC-TTCSEEECTTSCCCEECTGGGTTC-TTCCEEECC
T ss_pred             cEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc-ccCCEEECCCCcCCccCHHHhcCC-CCCCEEECC
Confidence            999999999963  33433333 799999999999985 444443 789999999999999888889888 899999999


Q ss_pred             ccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccC------CCCCcEEEcccc
Q 007628          168 NDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ------LPNLQNFTYSFN  241 (595)
Q Consensus       168 ~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~------l~~L~~L~Ls~N  241 (595)
                      +|++.+.....|..+.+|++|+|++|+|+ .++..+..+.+|++|+|++|+|++.....|..      +..|+.|+|++|
T Consensus       225 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N  303 (330)
T 1xku_A          225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN  303 (330)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             CCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC
Confidence            99999888889999999999999999999 88899999999999999999999876666654      377999999999


Q ss_pred             cCCC
Q 007628          242 YFTG  245 (595)
Q Consensus       242 ~Lsg  245 (595)
                      .+..
T Consensus       304 ~~~~  307 (330)
T 1xku_A          304 PVQY  307 (330)
T ss_dssp             SSCG
T ss_pred             cccc
Confidence            9864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=1.7e-27  Score=264.18  Aligned_cols=153  Identities=22%  Similarity=0.281  Sum_probs=117.3

Q ss_pred             ceecccCCCCCCCC-----CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcC
Q 007628            2 GVFCARSPFNSPSL-----RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRF   76 (595)
Q Consensus         2 gv~C~~~~~~~~~l-----~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~L   76 (595)
                      || |++...+...+     .+|++|||++|+|+++.+.+|.++++|++|+|++|+|+++.+++|++|.+|++|+|++|+|
T Consensus         8 ~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A            8 GV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             SE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence            55 77664444333     4799999999999988888899999999999999999988888999999999999999999


Q ss_pred             CCcCchhcCCCCCCCEEEccCCCCCCC-CCccccc-cCCCeeeccCCccccCCC-ccc-CCCCceeEEeeccCCCCCcCc
Q 007628           77 VGKFPKLFLSLPKLKYLDLRFNEFEGS-VPSKLFD-KDLDAIFLNDNRFQFGIP-ENL-GNSPVSVLVFANNDLGGCIPG  152 (595)
Q Consensus        77 sg~lp~~l~~L~~L~~LdLs~N~l~g~-ip~~l~~-~~L~~L~L~~N~l~~~~p-~~l-~~~~L~~L~L~~N~l~~~ip~  152 (595)
                      ++.....|.+|.+|++|||++|+|++. ++..+.. .+|++|+|++|++.+.+. ..+ ...+|++|+|++|++++.++.
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            988888899999999999999998853 3333333 678888888887544443 223 335677777777777766555


Q ss_pred             ccc
Q 007628          153 SIG  155 (595)
Q Consensus       153 ~l~  155 (595)
                      .|+
T Consensus       167 ~l~  169 (549)
T 2z81_A          167 SLK  169 (549)
T ss_dssp             TTT
T ss_pred             hhh
Confidence            544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=4.8e-27  Score=267.58  Aligned_cols=259  Identities=17%  Similarity=0.212  Sum_probs=164.4

Q ss_pred             CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCC--CCchhhcCC--CCCCEEeccCCcCCCcCchhcCC
Q 007628           11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCG--VVPSTFRRL--KLLYEVDLSNNRFVGKFPKLFLS   86 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~--~lp~~~~~L--~~L~~L~Ls~N~Lsg~lp~~l~~   86 (595)
                      .+..+.+|+.|+|++|+|+++....|.++.+|++|+|++|.+.+  +....|..+  .+|++|+|++|+|+++.+..|.+
T Consensus       324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~  403 (680)
T 1ziw_A          324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW  403 (680)
T ss_dssp             TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred             hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence            45567888888888888888777778887777777776665322  111122211  24444444445554444445555


Q ss_pred             CCCCCEEEccCCCCCCCCCccccc--------------------------cCCCeeeccCCccc--cCCCcccCC-CCce
Q 007628           87 LPKLKYLDLRFNEFEGSVPSKLFD--------------------------KDLDAIFLNDNRFQ--FGIPENLGN-SPVS  137 (595)
Q Consensus        87 L~~L~~LdLs~N~l~g~ip~~l~~--------------------------~~L~~L~L~~N~l~--~~~p~~l~~-~~L~  137 (595)
                      +.+|++|||++|+|.+.++...+.                          .+|++|+|++|++.  +.++..+.. .+|+
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence            555555555555554433322221                          34445555544443  233343333 5678


Q ss_pred             eEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC--------CccCCCccceEEeccCccccCCCCCCcCCCCCc
Q 007628          138 VLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP--------PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSL  209 (595)
Q Consensus       138 ~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip--------~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L  209 (595)
                      +|+|++|+|++.....|..+ .+|++|+|++|++++...        ..|++|.+|++|+|++|+|+....+.|.+|.+|
T Consensus       484 ~L~Ls~N~l~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L  562 (680)
T 1ziw_A          484 ILDLSNNNIANINDDMLEGL-EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL  562 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             EEECCCCCCCcCChhhhccc-cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence            88888888887666667666 678888888887764321        236777888888888888884444567888888


Q ss_pred             cEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcccc--ccCCCCcccccCCCCCCC
Q 007628          210 EQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTA--AAGGGGRMMAARPADCSK  270 (595)
Q Consensus       210 ~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~--~~~~~~~~~~~~~~~c~~  270 (595)
                      ++|+|++|+|++.....|.++.+|++|+|++|+|++.......  ........+.+|.+.|++
T Consensus       563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred             ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence            8888888888876666778888888888888888887665432  233444556777887764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=3e-27  Score=251.66  Aligned_cols=231  Identities=17%  Similarity=0.246  Sum_probs=168.1

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .+.++++|+|++|.|+.+....|.++++|++|+|++|+|+++....|+++.+|++|+|++|+|++..+..|.++.+|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            34667777777777776655556777777777777777777666677777777777777777777667777777777777


Q ss_pred             EccCCCCCCCCCcccc--ccCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccc-------------
Q 007628           94 DLRFNEFEGSVPSKLF--DKDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKM-------------  157 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~--~~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l-------------  157 (595)
                      ||++|+|+ .++..++  ..+|++|+|++|++++.....+.. .+|++|+|++|++++.....+..+             
T Consensus       123 ~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~  201 (390)
T 3o6n_A          123 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL  201 (390)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred             ECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc
Confidence            77777777 4444443  267777777777777665554443 567777777777665322221111             


Q ss_pred             -----------------------cchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEc
Q 007628          158 -----------------------GKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNV  214 (595)
Q Consensus       158 -----------------------~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~L  214 (595)
                                             ..+|++|+|++|++++.  ..|+.+.+|++|+|++|.|++..+..|..+.+|++|+|
T Consensus       202 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (390)
T 3o6n_A          202 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  279 (390)
T ss_dssp             ECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             CCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence                                   12466777777777654  56788889999999999999888888999999999999


Q ss_pred             cCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          215 AHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       215 s~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      ++|+|++ ++..+..+.+|++|+|++|+|++...
T Consensus       280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~  312 (390)
T 3o6n_A          280 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVER  312 (390)
T ss_dssp             CSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGG
T ss_pred             CCCcCcc-cCcccCCCCCCCEEECCCCcceecCc
Confidence            9999985 55667788999999999999986543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.94  E-value=3.6e-27  Score=260.14  Aligned_cols=230  Identities=21%  Similarity=0.244  Sum_probs=161.1

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      .+|+.|||++|+|+++....|.++.+|++|+|++|+|+++.++.|++|.+|++|||++|+|+ .++..  .+.+|++|||
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            57889999999999888888999999999999999999888888999999999999999988 45554  7888888888


Q ss_pred             cCCCCCC-CCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCC--CCCcCccccccc-------------
Q 007628           96 RFNEFEG-SVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDL--GGCIPGSIGKMG-------------  158 (595)
Q Consensus        96 s~N~l~g-~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l--~~~ip~~l~~l~-------------  158 (595)
                      ++|+|++ .++..+.. .+|++|+|++|++.+..-..+....|++|+|++|++  .+.++..|..+.             
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~  177 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE  177 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSC
T ss_pred             cCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcc
Confidence            8888886 35555544 778888888877764221111111225555555555  333333332210             


Q ss_pred             ---------------------------------------------------------------------chhhHHHhhcc
Q 007628          159 ---------------------------------------------------------------------KTLNEIILMND  169 (595)
Q Consensus       159 ---------------------------------------------------------------------~~L~~L~Ls~N  169 (595)
                                                                                           .+|++|+|++|
T Consensus       178 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n  257 (520)
T 2z7x_B          178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV  257 (520)
T ss_dssp             CCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEE
T ss_pred             hhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecc
Confidence                                                                                 13444555555


Q ss_pred             ccCCCCCCcc-----------------------------------------------------CCCccceEEeccCcccc
Q 007628          170 NLTGCLPPQI-----------------------------------------------------GMLKNLTVFDVSFNHLQ  196 (595)
Q Consensus       170 ~l~g~ip~~~-----------------------------------------------------~~L~~L~~LdLs~N~L~  196 (595)
                      ++.|.++..+                                                     ..+.+|++|+|++|+|+
T Consensus       258 ~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~  337 (520)
T 2z7x_B          258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT  337 (520)
T ss_dssp             EEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCC
T ss_pred             cccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccC
Confidence            5555444443                                                     45667777888888887


Q ss_pred             CCCCCCcCCCCCccEEEccCCcCCC--CCchhccCCCCCcEEEcccccCCCCCC
Q 007628          197 GSLPSSIGNMKSLEQLNVAHNRFTG--VIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       197 g~lP~~l~~L~~L~~L~Ls~N~Lsg--~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      +.++..|+.+.+|++|+|++|+|++  .++..|+++.+|++|+|++|.|++.++
T Consensus       338 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~  391 (520)
T 2z7x_B          338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK  391 (520)
T ss_dssp             TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred             hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence            7777777788888888888888876  455667777788888888888777443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=2.3e-27  Score=266.41  Aligned_cols=251  Identities=18%  Similarity=0.147  Sum_probs=183.1

Q ss_pred             CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc--CchhcCCCCC
Q 007628           12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK--FPKLFLSLPK   89 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~--lp~~l~~L~~   89 (595)
                      +..+.+|+.|+|++|++ +.++ .+ ++.+|++|+|++|++.+.+  .+.++.+|++|+|++|+|++.  +...+.++.+
T Consensus       303 l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~  377 (606)
T 3vq2_A          303 VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS  377 (606)
T ss_dssp             CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSC
T ss_pred             ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCc
Confidence            34455666666666666 3344 34 6666666666666444333  566778888888888887755  3677788888


Q ss_pred             CCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCC-ccc-CCCCceeEEeeccCCCCCcCcccccccchhhHHHh
Q 007628           90 LKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIP-ENL-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIIL  166 (595)
Q Consensus        90 L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p-~~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~L  166 (595)
                      |++|+|++|++++ ++..+.. .+|++|+|++|++.+... ..+ ...+|++|+|++|++++.++..|+.+ .+|++|+|
T Consensus       378 L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l  455 (606)
T 3vq2_A          378 LRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL-TSLNTLKM  455 (606)
T ss_dssp             CCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEEC
T ss_pred             ccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC-CCCCEEEC
Confidence            8888888888774 3333333 788888888888887765 333 34678888888888888888888877 78888888


Q ss_pred             hccccCC-CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCC
Q 007628          167 MNDNLTG-CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTG  245 (595)
Q Consensus       167 s~N~l~g-~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg  245 (595)
                      ++|++.+ .++..|+.+.+|++|+|++|+|++..++.|+++.+|++|+|++|+|++.++..|.++.+|++|||++|+|+.
T Consensus       456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  535 (606)
T 3vq2_A          456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET  535 (606)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred             CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence            8888887 467888888889999999998888888888888889999999998888888888888889999999998885


Q ss_pred             CCCcccccc-CCCCcccccCCCCCC
Q 007628          246 EPPSCTAAA-GGGGRMMAARPADCS  269 (595)
Q Consensus       246 ~~p~~~~~~-~~~~~~~~~~~~~c~  269 (595)
                      ......... ......+.+|.+.|+
T Consensus       536 ~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          536 SKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             EESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             cCHhHhhhcccCcEEEccCCCcccC
Confidence            433322221 134445666666664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1e-26  Score=235.60  Aligned_cols=214  Identities=18%  Similarity=0.225  Sum_probs=169.6

Q ss_pred             ceecccCCCCCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCc
Q 007628            2 GVFCARSPFNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFP   81 (595)
Q Consensus         2 gv~C~~~~~~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp   81 (595)
                      |+.|.|.       ..++.|++++++|+. ++..+.  .+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++..
T Consensus         9 ~~~C~c~-------~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~   78 (270)
T 2o6q_A            9 GGVCSCN-------NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA   78 (270)
T ss_dssp             TCSBEEE-------TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCT
T ss_pred             CCCCEeC-------CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeCh
Confidence            5667664       356799999999987 455444  689999999999998888899999999999999999997777


Q ss_pred             hhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchh
Q 007628           82 KLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTL  161 (595)
Q Consensus        82 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L  161 (595)
                      ..|.++.+|++|+|++|+|++.....+..                      ..+|++|+|++|+|++.....|..+ .+|
T Consensus        79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------l~~L~~L~l~~n~l~~~~~~~~~~l-~~L  135 (270)
T 2o6q_A           79 GIFKELKNLETLWVTDNKLQALPIGVFDQ----------------------LVNLAELRLDRNQLKSLPPRVFDSL-TKL  135 (270)
T ss_dssp             TTTSSCTTCCEEECCSSCCCCCCTTTTTT----------------------CSSCCEEECCSSCCCCCCTTTTTTC-TTC
T ss_pred             hhhcCCCCCCEEECCCCcCCcCCHhHccc----------------------ccCCCEEECCCCccCeeCHHHhCcC-cCC
Confidence            77899999999999999998433222211                      1334455555555555555555555 677


Q ss_pred             hHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccc
Q 007628          162 NEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN  241 (595)
Q Consensus       162 ~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N  241 (595)
                      ++|+|++|+|.+.....|..+.+|++|+|++|+|++.....|..+.+|++|+|++|+|++.....|..+.+|+.|+|++|
T Consensus       136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence            88888888887666667888999999999999999777777899999999999999999777777888999999999999


Q ss_pred             cCCCCCC
Q 007628          242 YFTGEPP  248 (595)
Q Consensus       242 ~Lsg~~p  248 (595)
                      .|.+...
T Consensus       216 ~~~c~c~  222 (270)
T 2o6q_A          216 PWDCTCN  222 (270)
T ss_dssp             CBCCSSS
T ss_pred             CeeCCCc
Confidence            9987643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=1.1e-26  Score=259.26  Aligned_cols=230  Identities=17%  Similarity=0.220  Sum_probs=167.8

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      .+|+.|||++|+|+++...+|.++.+|++|+|++|+|+++.+++|++|.+|++|||++|+|+ .++..  .+.+|++|||
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            57899999999999888889999999999999999999888889999999999999999988 55554  7889999999


Q ss_pred             cCCCCCCC-CCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCC--CCCcCccccccc-------------
Q 007628           96 RFNEFEGS-VPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDL--GGCIPGSIGKMG-------------  158 (595)
Q Consensus        96 s~N~l~g~-ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l--~~~ip~~l~~l~-------------  158 (595)
                      ++|+|++. ++..+.. .+|++|+|++|++++..-..+....|++|+|++|.+  ++..+..|..+.             
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~  208 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL  208 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence            99998852 3344443 788888888888875332222222347777777776  555554444321             


Q ss_pred             -------------------------------------------------------------------chhhHHHhhcccc
Q 007628          159 -------------------------------------------------------------------KTLNEIILMNDNL  171 (595)
Q Consensus       159 -------------------------------------------------------------------~~L~~L~Ls~N~l  171 (595)
                                                                                         .+|++|++++|++
T Consensus       209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l  288 (562)
T 3a79_B          209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI  288 (562)
T ss_dssp             CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred             hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence                                                                               1455666666666


Q ss_pred             CCCCCCcc-----------------------------------------------------CCCccceEEeccCccccCC
Q 007628          172 TGCLPPQI-----------------------------------------------------GMLKNLTVFDVSFNHLQGS  198 (595)
Q Consensus       172 ~g~ip~~~-----------------------------------------------------~~L~~L~~LdLs~N~L~g~  198 (595)
                      .|.++..+                                                     +.+.+|++|+|++|+|++.
T Consensus       289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~  368 (562)
T 3a79_B          289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS  368 (562)
T ss_dssp             CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT
T ss_pred             eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccc
Confidence            66665544                                                     5566777778888877777


Q ss_pred             CCCCcCCCCCccEEEccCCcCCCC--CchhccCCCCCcEEEcccccCCCCCC
Q 007628          199 LPSSIGNMKSLEQLNVAHNRFTGV--IPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       199 lP~~l~~L~~L~~L~Ls~N~Lsg~--iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      ++..|+++.+|++|+|++|+|++.  ++..|.++.+|++|+|++|+|++.++
T Consensus       369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  420 (562)
T 3a79_B          369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY  420 (562)
T ss_dssp             TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred             hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC
Confidence            777777777788888888777752  34557777777777777777776443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=1.6e-26  Score=270.42  Aligned_cols=236  Identities=20%  Similarity=0.216  Sum_probs=119.5

Q ss_pred             CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchh--hcCCCCCCEEeccCCcCCCcCc-hhcCCCC
Q 007628           12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPST--FRRLKLLYEVDLSNNRFVGKFP-KLFLSLP   88 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~--~~~L~~L~~L~Ls~N~Lsg~lp-~~l~~L~   88 (595)
                      +.++.+|++|+|++|+|+++.++.|++|.+|++|+|++|+|++.+...  |++|.+|++|+|++|+|++... ..|.+|.
T Consensus        69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~  148 (844)
T 3j0a_A           69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN  148 (844)
T ss_dssp             TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred             hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCC
Confidence            445555555555555555555555555555555555555555544333  5555566666666665554432 3455566


Q ss_pred             CCCEEEccCCCCCCCCCccccc---cCCCeeeccCCccccCCCcccCC-------CCceeEEeeccCCCCCcCcccccc-
Q 007628           89 KLKYLDLRFNEFEGSVPSKLFD---KDLDAIFLNDNRFQFGIPENLGN-------SPVSVLVFANNDLGGCIPGSIGKM-  157 (595)
Q Consensus        89 ~L~~LdLs~N~l~g~ip~~l~~---~~L~~L~L~~N~l~~~~p~~l~~-------~~L~~L~L~~N~l~~~ip~~l~~l-  157 (595)
                      +|++|+|++|.|++.....+..   .+|+.|+|++|.+.+.+...+..       ..|++|+|++|++++.+...+.+. 
T Consensus       149 ~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l  228 (844)
T 3j0a_A          149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI  228 (844)
T ss_dssp             SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTS
T ss_pred             CCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhc
Confidence            6666666666555444433322   34444444444444333222111       125555555555444333322211 


Q ss_pred             ------------------------------------cchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCC
Q 007628          158 ------------------------------------GKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPS  201 (595)
Q Consensus       158 ------------------------------------~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~  201 (595)
                                                          ..+|++|+|++|.+.+.....|..+.+|++|+|++|+|++..+.
T Consensus       229 ~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~  308 (844)
T 3j0a_A          229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE  308 (844)
T ss_dssp             CSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTT
T ss_pred             CcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChH
Confidence                                                02345555555555554455555555555555555555555555


Q ss_pred             CcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628          202 SIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP  247 (595)
Q Consensus       202 ~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~  247 (595)
                      +|..+.+|++|+|++|+|++..+..|.++.+|+.|+|++|+|++..
T Consensus       309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~  354 (844)
T 3j0a_A          309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ  354 (844)
T ss_dssp             TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC
T ss_pred             HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC
Confidence            5555555555555555555544555555555555555555554433

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=7.3e-27  Score=236.86  Aligned_cols=206  Identities=15%  Similarity=0.174  Sum_probs=134.8

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF   97 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~   97 (595)
                      |+.|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|+|++|+|++.....|.++.+|++|+|++
T Consensus        30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  109 (276)
T 2z62_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE  109 (276)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC
Confidence            55555555555554444555555555555555555544444555555555555555555544444555555555555555


Q ss_pred             CCCCCCCCccccccCCCeeeccCCccccCCCccc-CCCCceeEEeeccCCCCC-cCcccccccchhhHHHhhccccCCCC
Q 007628           98 NEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENL-GNSPVSVLVFANNDLGGC-IPGSIGKMGKTLNEIILMNDNLTGCL  175 (595)
Q Consensus        98 N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l-~~~~L~~L~L~~N~l~~~-ip~~l~~l~~~L~~L~Ls~N~l~g~i  175 (595)
                      |+|+                       +.....+ ...+|++|+|++|++++. ++..|+.+ .+|++|+|++|++++..
T Consensus       110 n~l~-----------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l-~~L~~L~Ls~N~l~~~~  165 (276)
T 2z62_A          110 TNLA-----------------------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL-TNLEHLDLSSNKIQSIY  165 (276)
T ss_dssp             SCCC-----------------------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC-TTCCEEECCSSCCCEEC
T ss_pred             CCcc-----------------------ccCchhcccCCCCCEEECcCCccceecCchhhccC-CCCCEEECCCCCCCcCC
Confidence            5554                       3322222 224566666666666653 46666666 67777888887777666


Q ss_pred             CCccCCCccce----EEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          176 PPQIGMLKNLT----VFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       176 p~~~~~L~~L~----~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      ...|..+.+|+    +|+|++|.|++.....+. ..+|++|+|++|+|++.....|.++.+|+.|+|++|.|++...
T Consensus       166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            66666666666    899999999965555554 4589999999999998777778999999999999999998765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=4.2e-28  Score=251.10  Aligned_cols=202  Identities=19%  Similarity=0.233  Sum_probs=126.3

Q ss_pred             CCCCCcEEEccCCcCCCCCchhh--cCCCCCCEEeccCCcCCCcCchhcCCC-----CCCCEEEccCCCCCCCCCccccc
Q 007628           38 RLTDLAIFHINSNRFCGVVPSTF--RRLKLLYEVDLSNNRFVGKFPKLFLSL-----PKLKYLDLRFNEFEGSVPSKLFD  110 (595)
Q Consensus        38 ~L~~L~~L~Ls~N~l~~~lp~~~--~~L~~L~~L~Ls~N~Lsg~lp~~l~~L-----~~L~~LdLs~N~l~g~ip~~l~~  110 (595)
                      ++.+|++|+|++|+|++.++..+  +++.+|++|+|++|+|++. +..|.++     .+|++|+|++|+|++.....+..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            56677777777777776666655  6677777777777777655 5555554     67777777777776555444433


Q ss_pred             -cCCCeeeccCCccccCC--C-cc--cCCCCceeEEeeccCCCC--CcCcccccccchhhHHHhhccccCCCCC-CccCC
Q 007628          111 -KDLDAIFLNDNRFQFGI--P-EN--LGNSPVSVLVFANNDLGG--CIPGSIGKMGKTLNEIILMNDNLTGCLP-PQIGM  181 (595)
Q Consensus       111 -~~L~~L~L~~N~l~~~~--p-~~--l~~~~L~~L~L~~N~l~~--~ip~~l~~l~~~L~~L~Ls~N~l~g~ip-~~~~~  181 (595)
                       .+|++|+|++|++.+.+  . ..  ....+|++|+|++|+|++  .+...++....+|++|+|++|++.+.++ ..+..
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence             66777777777665431  1 11  233567777777777663  2222222222567777777777776553 34555


Q ss_pred             CccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCC
Q 007628          182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTG  245 (595)
Q Consensus       182 L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg  245 (595)
                      +.+|++|+|++|+|+ .++..+.  .+|++|+|++|+|++. +. +..+.+|++|+|++|.|++
T Consensus       252 l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            667777777777776 5666555  6677777777777654 33 6667777777777777765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=1.6e-26  Score=263.22  Aligned_cols=232  Identities=21%  Similarity=0.256  Sum_probs=196.4

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCc-hhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp-~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      ..|+.|+|++|+|+++....|..+.+|++|+|++|+|.+.+. ..|.++.+|++|+|++|++.+.....|..+.+|++|+
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  460 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM  460 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred             CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence            357778888888888888888899999999999999887555 6788999999999999998888888888999999999


Q ss_pred             ccCCCCC--CCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCc--------ccccccchhh
Q 007628           95 LRFNEFE--GSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPG--------SIGKMGKTLN  162 (595)
Q Consensus        95 Ls~N~l~--g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~--------~l~~l~~~L~  162 (595)
                      |++|.+.  +.++..+.. .+|++|+|++|++++.....+. ..+|++|+|++|++++....        .|..+ .+|+
T Consensus       461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l-~~L~  539 (680)
T 1ziw_A          461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL-SHLH  539 (680)
T ss_dssp             CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTC-TTCC
T ss_pred             hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCC-CCCC
Confidence            9999886  455555544 7899999999999977766554 47899999999999865322        25556 7899


Q ss_pred             HHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhcc-CCCCCcEEEcccc
Q 007628          163 EIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVC-QLPNLQNFTYSFN  241 (595)
Q Consensus       163 ~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~-~l~~L~~L~Ls~N  241 (595)
                      +|+|++|++.......|.+|.+|++|||++|+|++.....|..+.+|++|+|++|+|++.....|. .+.+|+.|+|++|
T Consensus       540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN  619 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred             EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence            999999999965556799999999999999999977777789999999999999999998888887 7899999999999


Q ss_pred             cCCCCCC
Q 007628          242 YFTGEPP  248 (595)
Q Consensus       242 ~Lsg~~p  248 (595)
                      .|.+...
T Consensus       620 ~~~c~c~  626 (680)
T 1ziw_A          620 PFDCTCE  626 (680)
T ss_dssp             CCCBCCC
T ss_pred             CcccCCc
Confidence            9988754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=5.2e-27  Score=246.64  Aligned_cols=246  Identities=17%  Similarity=0.191  Sum_probs=199.7

Q ss_pred             eEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCC
Q 007628           19 ASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN   98 (595)
Q Consensus        19 ~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N   98 (595)
                      .+.|+++++++. ++..+.  .+|++|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|||++|
T Consensus        34 ~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (353)
T 2z80_A           34 GICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN  110 (353)
T ss_dssp             SEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             eEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence            358999999987 455554  48999999999999888779999999999999999999888889999999999999999


Q ss_pred             CCCCCCCcc-ccc-cCCCeeeccCCccccCCC-ccc-CCCCceeEEeeccC-CCCCcCcccccccchhhHHHhhccccCC
Q 007628           99 EFEGSVPSK-LFD-KDLDAIFLNDNRFQFGIP-ENL-GNSPVSVLVFANND-LGGCIPGSIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        99 ~l~g~ip~~-l~~-~~L~~L~L~~N~l~~~~p-~~l-~~~~L~~L~L~~N~-l~~~ip~~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      +|++ +... +.. .+|++|+|++|++++... ..+ ...+|++|++++|+ +++.....|+.+ .+|++|+|++|++.+
T Consensus       111 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          111 YLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEIDASDLQS  188 (353)
T ss_dssp             CCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEEEETTCCE
T ss_pred             cCCc-CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC-CCCCEEECCCCCcCc
Confidence            9994 5544 333 799999999999985444 234 45789999999995 666667778887 899999999999999


Q ss_pred             CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCC-------------------------------
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV-------------------------------  222 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~-------------------------------  222 (595)
                      ..+..|+++.+|++|+|++|.++......+..+.+|++|+|++|+|++.                               
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~  268 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ  268 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred             cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence            9899999999999999999999743333445689999999999999873                               


Q ss_pred             CchhccCCCCCcEEEcccccCCCCCCccc-cccCCCCcccccCCCCCC
Q 007628          223 IPSSVCQLPNLQNFTYSFNYFTGEPPSCT-AAAGGGGRMMAARPADCS  269 (595)
Q Consensus       223 iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~-~~~~~~~~~~~~~~~~c~  269 (595)
                      ++..|.++.+|++|||++|+|+....... .........+.+|.+.|+
T Consensus       269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            34567889999999999999996544432 223344455666666665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=2.3e-26  Score=269.17  Aligned_cols=236  Identities=19%  Similarity=0.184  Sum_probs=174.8

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCC-chhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVV-PSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~l-p~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      .+|+.|||++|+|+++....|.+|.+|++|+|++|.+.+.+ +.+|++|.+|++|+|++|+|+++.++.|.+|.+|++||
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            56888899988888888888888888888888888655544 67788888888888888888877788888888888888


Q ss_pred             ccCCCCCCCCCcc--ccc-cCCCeeeccCCccccCCC-ccc-CCCCceeEEeeccCCCCCcCccccccc-ch--------
Q 007628           95 LRFNEFEGSVPSK--LFD-KDLDAIFLNDNRFQFGIP-ENL-GNSPVSVLVFANNDLGGCIPGSIGKMG-KT--------  160 (595)
Q Consensus        95 Ls~N~l~g~ip~~--l~~-~~L~~L~L~~N~l~~~~p-~~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~-~~--------  160 (595)
                      |++|+|++.+...  +.. .+|++|+|++|++++... ..+ ...+|++|+|++|.|++.....|+.+. .+        
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~  183 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA  183 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCC
Confidence            8888888755443  222 678888888888876543 233 346788888888887776666554431 22        


Q ss_pred             ----------------------hhHHHhhccccCCCCCCccCC-------------------------------------
Q 007628          161 ----------------------LNEIILMNDNLTGCLPPQIGM-------------------------------------  181 (595)
Q Consensus       161 ----------------------L~~L~Ls~N~l~g~ip~~~~~-------------------------------------  181 (595)
                                            |++|+|++|++.+.+...|..                                     
T Consensus       184 n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l  263 (844)
T 3j0a_A          184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL  263 (844)
T ss_dssp             SBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred             CccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence                                  555555555554443332221                                     


Q ss_pred             -CccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccc
Q 007628          182 -LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCT  251 (595)
Q Consensus       182 -L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~  251 (595)
                       +.+|++|+|++|.+.+.....|..+.+|++|+|++|+|++..+..|.++.+|++|+|++|.|++......
T Consensus       264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  334 (844)
T 3j0a_A          264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF  334 (844)
T ss_dssp             TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred             ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh
Confidence             1467778888888777777788888899999999999988888888889999999999999887755433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.94  E-value=6.3e-27  Score=262.84  Aligned_cols=231  Identities=16%  Similarity=0.154  Sum_probs=205.7

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCC--CchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGV--VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK   91 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~--lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~   91 (595)
                      .+.+|+.|+|++|.+.+.+  .++.+.+|++|+|++|+|++.  +...|.++.+|++|+|++|++++ ++..|.++.+|+
T Consensus       326 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~  402 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ  402 (606)
T ss_dssp             CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred             CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence            7789999999999655433  788999999999999999876  48899999999999999999985 558899999999


Q ss_pred             EEEccCCCCCCCCCcc-ccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCC-CcCcccccccchhhHHHhh
Q 007628           92 YLDLRFNEFEGSVPSK-LFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGG-CIPGSIGKMGKTLNEIILM  167 (595)
Q Consensus        92 ~LdLs~N~l~g~ip~~-l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~-~ip~~l~~l~~~L~~L~Ls  167 (595)
                      +|+|++|++.+..+.. +.. .+|++|+|++|++.+..+..+.. .+|++|+|++|++++ .++..|+.+ .+|++|+|+
T Consensus       403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls  481 (606)
T 3vq2_A          403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT-TNLTFLDLS  481 (606)
T ss_dssp             EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECT
T ss_pred             eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC-CCCCEEECC
Confidence            9999999999877633 333 89999999999999888777654 789999999999998 478888888 899999999


Q ss_pred             ccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCC-CCcEEEcccccCCCC
Q 007628          168 NDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLP-NLQNFTYSFNYFTGE  246 (595)
Q Consensus       168 ~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~-~L~~L~Ls~N~Lsg~  246 (595)
                      +|++++..+..|+.|.+|++|+|++|+|++.++..|++|.+|++|+|++|+|+ .++..|..+. +|++|+|++|.|.+.
T Consensus       482 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             CCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence            99999999999999999999999999999988999999999999999999999 6777788886 699999999999986


Q ss_pred             CCc
Q 007628          247 PPS  249 (595)
Q Consensus       247 ~p~  249 (595)
                      ...
T Consensus       561 c~~  563 (606)
T 3vq2_A          561 CEH  563 (606)
T ss_dssp             STT
T ss_pred             Ccc
Confidence            654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=5.3e-26  Score=252.78  Aligned_cols=110  Identities=18%  Similarity=0.245  Sum_probs=63.5

Q ss_pred             hhhHHHhhccccCCCCCCccCCCccceEEeccCcccc-CCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEc
Q 007628          160 TLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQ-GSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTY  238 (595)
Q Consensus       160 ~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~-g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~L  238 (595)
                      +|++|+|++|.+.+.++..|.++.+|++|+|++|.++ +.++..|+.+.+|++|+|++|+|++..+..|.++.+|++|+|
T Consensus       422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  501 (570)
T 2z63_A          422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM  501 (570)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence            3444444445444445555556666666666666665 456666666666777777777766666666677777777777


Q ss_pred             ccccCCCCCCcccccc-CCCCcccccCCCCCC
Q 007628          239 SFNYFTGEPPSCTAAA-GGGGRMMAARPADCS  269 (595)
Q Consensus       239 s~N~Lsg~~p~~~~~~-~~~~~~~~~~~~~c~  269 (595)
                      ++|+|++......... ......+.+|.+.|+
T Consensus       502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            7777766655433222 222333444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=2.2e-26  Score=259.20  Aligned_cols=230  Identities=17%  Similarity=0.251  Sum_probs=194.3

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .+.++++|+|++|.|..+....|.+|.+|++|+|++|+|.++....|++|.+|++|+|++|+|++..+..|.+|.+|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            45778999999999998877788999999999999999999988899999999999999999999888899999999999


Q ss_pred             EccCCCCCCCCCcccc-c-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccc-------------
Q 007628           94 DLRFNEFEGSVPSKLF-D-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKM-------------  157 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~-~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l-------------  157 (595)
                      +|++|+|+ .++..++ . .+|++|+|++|++.+.....+.. .+|++|+|++|.|++.....+..+             
T Consensus       129 ~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l  207 (597)
T 3oja_B          129 VLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL  207 (597)
T ss_dssp             ECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEE
T ss_pred             EeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccc
Confidence            99999999 4554443 3 89999999999999888776654 789999999999986533322211             


Q ss_pred             -----------------------cchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEc
Q 007628          158 -----------------------GKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNV  214 (595)
Q Consensus       158 -----------------------~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~L  214 (595)
                                             ..+|+.|+|++|.+++.  ..|+.+.+|++|+|++|.|++.++..|+.|.+|++|+|
T Consensus       208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  285 (597)
T 3oja_B          208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  285 (597)
T ss_dssp             ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEEC
Confidence                                   12356666667766653  66888899999999999999888999999999999999


Q ss_pred             cCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628          215 AHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP  247 (595)
Q Consensus       215 s~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~  247 (595)
                      ++|+|++ ++..+..+.+|+.|+|++|.|++..
T Consensus       286 s~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~  317 (597)
T 3oja_B          286 SNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVE  317 (597)
T ss_dssp             TTSCCCE-EECSSSCCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCCC-CCcccccCCCCcEEECCCCCCCccC
Confidence            9999986 5677778899999999999998643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=2.4e-26  Score=256.61  Aligned_cols=235  Identities=22%  Similarity=0.192  Sum_probs=173.9

Q ss_pred             CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc-CchhcCCCCC
Q 007628           11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK-FPKLFLSLPK   89 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~-lp~~l~~L~~   89 (595)
                      .+.++.+|++|+|++|+|+++.++.|.++.+|++|||++|+|+. ++..  .+.+|++|+|++|+|++. ++..|.+|.+
T Consensus        71 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~  147 (562)
T 3a79_B           71 DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTK  147 (562)
T ss_dssp             GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTT
T ss_pred             hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCc
Confidence            46788999999999999999889999999999999999999994 5554  899999999999999863 4578999999


Q ss_pred             CCEEEccCCCCCCCCCccccccCCCeeeccCCcc--ccCCCcccCC----------------------------------
Q 007628           90 LKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRF--QFGIPENLGN----------------------------------  133 (595)
Q Consensus        90 L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l--~~~~p~~l~~----------------------------------  133 (595)
                      |++|||++|+|++..-..+...+|++|+|++|++  ++..+..+..                                  
T Consensus       148 L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~  227 (562)
T 3a79_B          148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN  227 (562)
T ss_dssp             CCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred             ccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence            9999999999875322222112337777777666  3332222111                                  


Q ss_pred             ------------------------------------------------CCceeEEeeccCCCCCcCccc-----------
Q 007628          134 ------------------------------------------------SPVSVLVFANNDLGGCIPGSI-----------  154 (595)
Q Consensus       134 ------------------------------------------------~~L~~L~L~~N~l~~~ip~~l-----------  154 (595)
                                                                      .+|++|++++|.++|.++..+           
T Consensus       228 l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L  307 (562)
T 3a79_B          228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSL  307 (562)
T ss_dssp             EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEE
T ss_pred             ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchhe
Confidence                                                            156666666676666665544           


Q ss_pred             ------------------------------------------ccccchhhHHHhhccccCCCCCCccCCCccceEEeccC
Q 007628          155 ------------------------------------------GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSF  192 (595)
Q Consensus       155 ------------------------------------------~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~  192 (595)
                                                                ..+ .+|++|+|++|++++.++.+|+++.+|++|+|++
T Consensus       308 ~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  386 (562)
T 3a79_B          308 MIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP-SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR  386 (562)
T ss_dssp             EEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC-CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCS
T ss_pred             ehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCC-CCceEEECCCCccccchhhhhcccCCCCEEECCC
Confidence                                                      223 5778888888888887888888888888888888


Q ss_pred             ccccC--CCCCCcCCCCCccEEEccCCcCCCCCch-hccCCCCCcEEEcccccCCCCCCc
Q 007628          193 NHLQG--SLPSSIGNMKSLEQLNVAHNRFTGVIPS-SVCQLPNLQNFTYSFNYFTGEPPS  249 (595)
Q Consensus       193 N~L~g--~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~-~l~~l~~L~~L~Ls~N~Lsg~~p~  249 (595)
                      |+|++  .++..|+.+.+|++|+|++|+|++.++. .+..+.+|++|+|++|+|++.+..
T Consensus       387 N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  446 (562)
T 3a79_B          387 NGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR  446 (562)
T ss_dssp             SCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGS
T ss_pred             CCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhh
Confidence            88875  2345678888888888888888874443 466777777777777777665443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.5e-27  Score=245.76  Aligned_cols=218  Identities=19%  Similarity=0.241  Sum_probs=178.1

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .+.+|+.|||++|+|+++....|.++.+|++|+|++|+|++...  |.++.+|++|+|++|+|++..     .+.+|++|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence            34578999999999998888889999999999999999987654  888999999999999887432     34789999


Q ss_pred             EccCCCCCCCCCccccccCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           94 DLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      +|++|+|++.....  ..+|++|+|++|++++.....+. ..+|++|+|++|.|++.....+.....+|++|+|++|+|+
T Consensus       105 ~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          105 HAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             ECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             ECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            99999988544332  26799999999999876665554 4679999999999998777777543378999999999988


Q ss_pred             CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCC
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT  244 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Ls  244 (595)
                      +.  ..+..+.+|++|+|++|+|++ ++..|..+.+|++|+|++|+|+ .++..+..+.+|+.|+|++|.|+
T Consensus       183 ~~--~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          183 DV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             EE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred             cc--ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence            55  334458899999999999984 5556889999999999999998 46778889999999999999998

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=6.5e-27  Score=242.69  Aligned_cols=240  Identities=10%  Similarity=0.069  Sum_probs=197.4

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      ..++.++++++++...+...+..+.+|++|+|++|+|+++....|.++.+|++|+|++|+|++...  |.++.+|++|||
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            468889999999887777778888899999999999999888999999999999999999997664  999999999999


Q ss_pred             cCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC
Q 007628           96 RFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL  175 (595)
Q Consensus        96 s~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i  175 (595)
                      ++|+|++..    ...+|++|+|++|++++.....  ..+|++|+|++|+|++.....++.+ .+|++|+|++|++.+..
T Consensus        88 s~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           88 NNNYVQELL----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             CSSEEEEEE----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCCCEEE
T ss_pred             cCCcccccc----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCCCccc
Confidence            999988422    2279999999999998765544  3579999999999999888888887 89999999999999877


Q ss_pred             CCccC-CCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcccccc
Q 007628          176 PPQIG-MLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAA  254 (595)
Q Consensus       176 p~~~~-~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~  254 (595)
                      ...|. .+.+|++|+|++|.|++.  ..+..+.+|++|+|++|+|++. +..|..+.+|++|+|++|.|++.........
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~  237 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQ  237 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCT
T ss_pred             HHHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHhhcCC
Confidence            77764 789999999999999855  3344589999999999999965 4558999999999999999996433322222


Q ss_pred             CCCCcccccCCCC
Q 007628          255 GGGGRMMAARPAD  267 (595)
Q Consensus       255 ~~~~~~~~~~~~~  267 (595)
                      ......+.+|.+.
T Consensus       238 ~L~~L~l~~N~~~  250 (317)
T 3o53_A          238 NLEHFDLRGNGFH  250 (317)
T ss_dssp             TCCEEECTTCCCB
T ss_pred             CCCEEEccCCCcc
Confidence            2333334444444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=3e-26  Score=252.76  Aligned_cols=83  Identities=17%  Similarity=0.193  Sum_probs=52.7

Q ss_pred             CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCC-CCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628           12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCG-VVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL   90 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~-~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L   90 (595)
                      +.++.+|++|||++|+|++ ++..  .+.+|++|+|++|+|++ .++..|++|.+|++|+|++|+|++   ..|..+.+|
T Consensus        65 ~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L  138 (520)
T 2z7x_B           65 FKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHL  138 (520)
T ss_dssp             GTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTS
T ss_pred             hhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccc
Confidence            4566777777777777774 3333  67777777777777776 356777777777777777777654   233333444


Q ss_pred             --CEEEccCCCC
Q 007628           91 --KYLDLRFNEF  100 (595)
Q Consensus        91 --~~LdLs~N~l  100 (595)
                        ++|+|++|++
T Consensus       139 ~L~~L~l~~n~l  150 (520)
T 2z7x_B          139 NISKVLLVLGET  150 (520)
T ss_dssp             CEEEEEEEECTT
T ss_pred             eeeEEEeecccc
Confidence              4555544444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=3.8e-26  Score=266.55  Aligned_cols=229  Identities=15%  Similarity=0.186  Sum_probs=180.2

Q ss_pred             CCCCCCceeEEEccCCCCCC-----------------CCchhhc--CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEec
Q 007628           11 NSPSLRVVASIDLNHADIAG-----------------YLPPEIG--RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDL   71 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~n~i~~-----------------~lp~~~~--~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~L   71 (595)
                      .+.+|.+|+.|+|++|+|++                 .++..|+  +|.+|++|+|++|++.+.++..|++|.+|++|+|
T Consensus       443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI  522 (876)
T ss_dssp             GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred             HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence            35678889999999999998                 3788877  9999999999999999999999999999999999


Q ss_pred             cCCc-CCC-cCchhcCCCC-------CCCEEEccCCCCCCCCCc--cccc-cCCCeeeccCCccccCCCcccCCCCceeE
Q 007628           72 SNNR-FVG-KFPKLFLSLP-------KLKYLDLRFNEFEGSVPS--KLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVL  139 (595)
Q Consensus        72 s~N~-Lsg-~lp~~l~~L~-------~L~~LdLs~N~l~g~ip~--~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L  139 (595)
                      ++|+ |+| .++..|.+|.       +|++|+|++|+|+ .++.  .+.. .+|++|+|++|+++ .++.+....+|++|
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L  600 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDL  600 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEE
Confidence            9998 887 6776665554       8999999999998 7777  4544 78999999999988 66644445678899


Q ss_pred             EeeccCCCCCcCcccccccch-hhHHHhhccccCCCCCCccCCCcc--ceEEeccCccccCCCCCCc---C--CCCCccE
Q 007628          140 VFANNDLGGCIPGSIGKMGKT-LNEIILMNDNLTGCLPPQIGMLKN--LTVFDVSFNHLQGSLPSSI---G--NMKSLEQ  211 (595)
Q Consensus       140 ~L~~N~l~~~ip~~l~~l~~~-L~~L~Ls~N~l~g~ip~~~~~L~~--L~~LdLs~N~L~g~lP~~l---~--~L~~L~~  211 (595)
                      +|++|+|+ .++..|+.+ .+ |++|+|++|+|. .++..|..+..  |++|+|++|+|+|.++...   .  .+.+|++
T Consensus       601 ~Ls~N~l~-~lp~~l~~l-~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~  677 (876)
T 4ecn_A          601 KLDYNQIE-EIPEDFCAF-TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST  677 (876)
T ss_dssp             ECCSSCCS-CCCTTSCEE-CTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred             ECcCCccc-cchHHHhhc-cccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence            99999988 788888888 55 999999999888 77777777654  8888888888887655322   2  2347778


Q ss_pred             EEccCCcCCCCCchhccCCCCCcEEEcccccCC
Q 007628          212 LNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT  244 (595)
Q Consensus       212 L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Ls  244 (595)
                      |+|++|+|++.....+..+.+|+.|+|++|+|+
T Consensus       678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             EEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence            888888777433333446777777777777777

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.93  E-value=1.9e-26  Score=255.70  Aligned_cols=121  Identities=17%  Similarity=0.157  Sum_probs=100.4

Q ss_pred             CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc-CchhcCCCCC
Q 007628           11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK-FPKLFLSLPK   89 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~-lp~~l~~L~~   89 (595)
                      .+.++.+|++|+|++|+|+++.++.|+++.+|++|+|++|+|+++....|++|.+|++|+|++|+|++. ++..|.++.+
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  124 (549)
T 2z81_A           45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN  124 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence            467889999999999999998888999999999999999999988888899999999999999999863 4667888999


Q ss_pred             CCEEEccCCCCCCCCCccccc--cCCCeeeccCCccccCCCccc
Q 007628           90 LKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENL  131 (595)
Q Consensus        90 L~~LdLs~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l  131 (595)
                      |++|+|++|++.+.++...+.  .+|++|+|++|++++.++..+
T Consensus       125 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A          125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             ccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence            999999999865566543332  678888888888776655544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=7.8e-28  Score=249.06  Aligned_cols=223  Identities=17%  Similarity=0.170  Sum_probs=184.0

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCC-CCCchhhc-------CCCCCCEEeccCCcCCCcCchhc--
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFC-GVVPSTFR-------RLKLLYEVDLSNNRFVGKFPKLF--   84 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~-~~lp~~~~-------~L~~L~~L~Ls~N~Lsg~lp~~l--   84 (595)
                      +++|+.|+|++|++  .++..+...  |+.|+|++|+|. +.+...+.       ++.+|++|+|++|+|++.++..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            45678888999999  567777665  899999999994 45666665       89999999999999999888876  


Q ss_pred             CCCCCCCEEEccCCCCCCCCCccccc------cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCC--cCccc-
Q 007628           85 LSLPKLKYLDLRFNEFEGSVPSKLFD------KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGC--IPGSI-  154 (595)
Q Consensus        85 ~~L~~L~~LdLs~N~l~g~ip~~l~~------~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~--ip~~l-  154 (595)
                      .++.+|++|||++|+|++. +..+..      .+|++|+|++|++.+.....+.. .+|++|+|++|++.+.  +...+ 
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  196 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC  196 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence            8999999999999999976 544432      68999999999999887666654 7899999999998765  23333 


Q ss_pred             -ccccchhhHHHhhccccCCC--C-CCccCCCccceEEeccCccccCCCC-CCcCCCCCccEEEccCCcCCCCCchhccC
Q 007628          155 -GKMGKTLNEIILMNDNLTGC--L-PPQIGMLKNLTVFDVSFNHLQGSLP-SSIGNMKSLEQLNVAHNRFTGVIPSSVCQ  229 (595)
Q Consensus       155 -~~l~~~L~~L~Ls~N~l~g~--i-p~~~~~L~~L~~LdLs~N~L~g~lP-~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~  229 (595)
                       +.+ .+|++|+|++|+|++.  + ...+..+.+|++|||++|+|++..+ ..+..+.+|++|+|++|+|+ .++..+. 
T Consensus       197 ~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-  273 (312)
T 1wwl_A          197 PLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-  273 (312)
T ss_dssp             TTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred             hccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence             555 7899999999999832  2 2334577999999999999998774 56677899999999999999 6777666 


Q ss_pred             CCCCcEEEcccccCCCC
Q 007628          230 LPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       230 l~~L~~L~Ls~N~Lsg~  246 (595)
                       .+|++|||++|+|++.
T Consensus       274 -~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          274 -AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             -SEEEEEECCSSCCCSC
T ss_pred             -CCceEEECCCCCCCCC
Confidence             7899999999999987

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=1.5e-26  Score=234.68  Aligned_cols=224  Identities=17%  Similarity=0.190  Sum_probs=167.4

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      +.++..+++.++.+.+.  ..+.++.+|+.|++++|.|...  ..|+++.+|++|+|++|+|++.  ..|.++.+|++|+
T Consensus        18 ~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~   91 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLI   91 (272)
T ss_dssp             HHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEE
T ss_pred             HHHHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEE
Confidence            34455566666666654  3456677788888888877743  3577788888888888887753  3677788888888


Q ss_pred             ccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           95 LRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        95 Ls~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      |++|+|++.....+.. .+|++|+|++|++++.....+. ..+|++|+|++|+|++.....|..+ .+|++|+|++|+++
T Consensus        92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~  170 (272)
T 3rfs_A           92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL-TNLTELDLSYNQLQ  170 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCC
T ss_pred             CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccC-ccCCEEECCCCCcC
Confidence            8888887544443332 6777777777777765555443 3678888888888887666666666 78888888888888


Q ss_pred             CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcccc
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTA  252 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~  252 (595)
                      +.....|+.|.+|++|+|++|+|++.....|..+.+|++|+|++|.+.+.       +.+|++|++++|.++|.++...+
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence            77777788889999999999999887777788899999999999988754       45788889999999988876544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=2.6e-26  Score=252.61  Aligned_cols=218  Identities=19%  Similarity=0.232  Sum_probs=189.0

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .+.+|+.|+|++|+|+++.+..|+++.+|++|+|++|.|++...  |++|.+|++|+|++|+|++..     .+.+|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence            44589999999999999888999999999999999999997665  999999999999999998543     34899999


Q ss_pred             EccCCCCCCCCCccccccCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           94 DLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      +|++|+|++.....  ..+|+.|+|++|++++..+..+. ..+|++|+|++|.|++.++..|+....+|++|+|++|.|+
T Consensus       105 ~L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          105 HAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             ECCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             ECcCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            99999999655433  26899999999999988776665 4789999999999999888888743389999999999998


Q ss_pred             CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCC
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFT  244 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Ls  244 (595)
                      +.  ..+..+.+|++|||++|.|++ ++..|..+.+|+.|+|++|+|++ ++..+..+.+|+.|+|++|.|.
T Consensus       183 ~~--~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          183 DV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EE--ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             cc--cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            66  334568999999999999996 45558999999999999999995 6788999999999999999998

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.93  E-value=4.7e-26  Score=253.26  Aligned_cols=238  Identities=21%  Similarity=0.191  Sum_probs=192.8

Q ss_pred             CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhh-------------------cCCCCCCEEecc
Q 007628           12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTF-------------------RRLKLLYEVDLS   72 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~-------------------~~L~~L~~L~Ls   72 (595)
                      +..+.+|+.|+|++|++++ ++..+..+ +|+.|+|++|++..+-...+                   ..+.+|++|+|+
T Consensus       278 ~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~  355 (570)
T 2z63_A          278 FNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS  355 (570)
T ss_dssp             TGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECC
T ss_pred             hcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCc
Confidence            4456777788888777774 55556666 66666666666652211111                   567888888888


Q ss_pred             CCcCCCcC--chhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCc--ccCCCCceeEEeeccCCCC
Q 007628           73 NNRFVGKF--PKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPE--NLGNSPVSVLVFANNDLGG  148 (595)
Q Consensus        73 ~N~Lsg~l--p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~--~l~~~~L~~L~L~~N~l~~  148 (595)
                      +|+|++..  ...+.++.+|++|+|++|++.+.........+|++|+|++|++.+....  +....+|++|+|++|.+.+
T Consensus       356 ~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  435 (570)
T 2z63_A          356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV  435 (570)
T ss_dssp             SSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE
T ss_pred             CCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc
Confidence            88888553  6778889999999999999885444322227899999999999876652  2344789999999999999


Q ss_pred             CcCcccccccchhhHHHhhccccC-CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhc
Q 007628          149 CIPGSIGKMGKTLNEIILMNDNLT-GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSV  227 (595)
Q Consensus       149 ~ip~~l~~l~~~L~~L~Ls~N~l~-g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l  227 (595)
                      .+...|..+ .+|++|+|++|.+. +.++..|+.+.+|++|+|++|+|++..+.+|+.+.+|++|+|++|+|++.....|
T Consensus       436 ~~~~~~~~l-~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  514 (570)
T 2z63_A          436 AFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF  514 (570)
T ss_dssp             CCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cchhhhhcC-CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence            998888888 89999999999998 6788999999999999999999998889999999999999999999999888889


Q ss_pred             cCCCCCcEEEcccccCCCCCCcccc
Q 007628          228 CQLPNLQNFTYSFNYFTGEPPSCTA  252 (595)
Q Consensus       228 ~~l~~L~~L~Ls~N~Lsg~~p~~~~  252 (595)
                      .++.+|++|+|++|.|+|.++....
T Consensus       515 ~~l~~L~~L~l~~N~~~~~~~~~~~  539 (570)
T 2z63_A          515 DRLTSLQKIWLHTNPWDCSCPRIDY  539 (570)
T ss_dssp             TTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred             hcccCCcEEEecCCcccCCCcchHH
Confidence            9999999999999999998775443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=5.5e-25  Score=229.88  Aligned_cols=222  Identities=18%  Similarity=0.272  Sum_probs=134.5

Q ss_pred             CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628           12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK   91 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~   91 (595)
                      +.++.+|++|+|++|+|+++  ..|.++.+|++|+|++|+|.++..  |.++.+|++|+|++|.+...+. .+.++.+|+
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~  158 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLN  158 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCC
T ss_pred             hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCc
Confidence            45778888999999888874  468888889999999888886432  7788888888888885553433 366777777


Q ss_pred             EEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCC----------------------CCceeEEeeccCCCCC
Q 007628           92 YLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGN----------------------SPVSVLVFANNDLGGC  149 (595)
Q Consensus        92 ~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~----------------------~~L~~L~L~~N~l~~~  149 (595)
                      +|+|++|++.+... .....+|++|+|++|++.+... ....                      .+|++|+|++|++++.
T Consensus       159 ~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~  236 (347)
T 4fmz_A          159 YLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDL  236 (347)
T ss_dssp             EEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             EEEecCCCcCCchh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCC
Confidence            77777777663322 2222566666666666553221 2222                      3455555555555433


Q ss_pred             cCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccC
Q 007628          150 IPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ  229 (595)
Q Consensus       150 ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~  229 (595)
                      ..  +..+ .+|++|++++|++.+.  ..|..+.+|++|+|++|.|++.  ..+..+.+|++|+|++|+|++.....|++
T Consensus       237 ~~--~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  309 (347)
T 4fmz_A          237 SP--LANL-SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGG  309 (347)
T ss_dssp             GG--GTTC-TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred             cc--hhcC-CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence            22  3333 4555555555555532  3455555566666666655532  34555556666666666665555555556


Q ss_pred             CCCCcEEEcccccCCCCC
Q 007628          230 LPNLQNFTYSFNYFTGEP  247 (595)
Q Consensus       230 l~~L~~L~Ls~N~Lsg~~  247 (595)
                      +.+|++|+|++|.|++..
T Consensus       310 l~~L~~L~L~~n~l~~~~  327 (347)
T 4fmz_A          310 LTNLTTLFLSQNHITDIR  327 (347)
T ss_dssp             CTTCSEEECCSSSCCCCG
T ss_pred             cccCCEEEccCCcccccc
Confidence            666666666666655543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.2e-26  Score=251.92  Aligned_cols=198  Identities=12%  Similarity=0.104  Sum_probs=174.2

Q ss_pred             CCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeec
Q 007628           39 LTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFL  118 (595)
Q Consensus        39 L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L  118 (595)
                      +.+|+.|+|++|.|+++.+..|++|.+|++|+|++|+|++..+  |.++.+|++|||++|.|++..    ...+|++|+|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----CCCCcCEEEC
Confidence            3489999999999999989999999999999999999997765  899999999999999998432    2278999999


Q ss_pred             cCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccC-CCccceEEeccCccccC
Q 007628          119 NDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIG-MLKNLTVFDVSFNHLQG  197 (595)
Q Consensus       119 ~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~-~L~~L~~LdLs~N~L~g  197 (595)
                      ++|++.+.....+  .+|++|+|++|.|++..+..|+.+ .+|++|+|++|.|++.++..|. .|.+|++|+|++|.|++
T Consensus       107 ~~N~l~~~~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          107 ANNNISRVSCSRG--QGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             CSSCCCCEEECCC--SSCEEEECCSSCCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             cCCcCCCCCcccc--CCCCEEECCCCCCCCCCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            9999987665543  679999999999999989899888 8999999999999998888886 79999999999999996


Q ss_pred             CCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          198 SLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       198 ~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      .  ..+..+.+|++|+|++|+|++.. ..|..+.+|+.|||++|.|++...
T Consensus       184 ~--~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~lp~  231 (487)
T 3oja_A          184 V--KGQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEK  231 (487)
T ss_dssp             E--ECCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCEECT
T ss_pred             c--cccccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcccch
Confidence            6  33456999999999999999755 458899999999999999997443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=1.6e-24  Score=222.46  Aligned_cols=204  Identities=19%  Similarity=0.234  Sum_probs=160.9

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY   92 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~   92 (595)
                      .++.+++.|++++++|+. ++..+.  .+|++|+|++|+|+++....|.++.+|++|+|++|+|+++..  +..+.+|++
T Consensus         7 ~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred             cccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence            466788999999999886 444443  678999999999988888889999999999999999885432  377888999


Q ss_pred             EEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           93 LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        93 LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      |||++|+|+ .++..+.                      ...+|++|+|++|+|++.....|..+ .+|++|+|++|+|+
T Consensus        82 L~Ls~N~l~-~l~~~~~----------------------~l~~L~~L~l~~N~l~~l~~~~~~~l-~~L~~L~L~~N~l~  137 (290)
T 1p9a_G           82 LDLSHNQLQ-SLPLLGQ----------------------TLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLKGNELK  137 (290)
T ss_dssp             EECCSSCCS-SCCCCTT----------------------TCTTCCEEECCSSCCCCCCSSTTTTC-TTCCEEECTTSCCC
T ss_pred             EECCCCcCC-cCchhhc----------------------cCCCCCEEECCCCcCcccCHHHHcCC-CCCCEEECCCCCCC
Confidence            999999887 4433221                      12345666666666665555666666 77888888888888


Q ss_pred             CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      +.....|..+.+|++|+|++|+|++.....|..+.+|++|+|++|+|+ .++..+..+.+|+.|+|++|.|.+.
T Consensus       138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            777777888999999999999999666667788999999999999998 6777888888999999999998765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=3.3e-24  Score=234.05  Aligned_cols=212  Identities=19%  Similarity=0.174  Sum_probs=172.4

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY   92 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~   92 (595)
                      .++.+|+.|||++|+|+++ + .|+++.+|++|+|++|+|+++   .|+++.+|++|+|++|+|++.   .|.++.+|++
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~  110 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTY  110 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCE
T ss_pred             hHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee---ecCCCCcCCE
Confidence            3477899999999999985 3 788999999999999999975   288999999999999999975   2888999999


Q ss_pred             EEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           93 LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        93 LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      |||++|+|++ ++ .....+|++|+|++|++++.  +.....+|++|++++|++.+.+  .++.+ .+|++|+|++|+++
T Consensus       111 L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l-~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          111 LNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQ-TQLTTLDCSFNKIT  183 (457)
T ss_dssp             EECCSSCCSC-CC-CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTC-TTCCEEECCSSCCC
T ss_pred             EECCCCcCCe-ec-CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccC-CcCCEEECCCCccc
Confidence            9999999986 43 22237899999999998874  3344577899999998666655  46666 78899999999888


Q ss_pred             CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      +. +  ++.+.+|++|+|++|+|++.   .|+.+.+|++|+|++|+|++ ++  ++.+.+|+.|+|++|+|++...
T Consensus       184 ~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~  250 (457)
T 3bz5_A          184 EL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV  250 (457)
T ss_dssp             CC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC
T ss_pred             ee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH
Confidence            64 3  78888899999999998864   48888889999999999987 44  7888889999999998888653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=1.6e-24  Score=236.44  Aligned_cols=219  Identities=22%  Similarity=0.335  Sum_probs=165.9

Q ss_pred             CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628           12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK   91 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~   91 (595)
                      +.++.+|+.|+|++|+++++  ..+.++.+|++|+|++|+|.+...  ++.+.+|++|+|++|+|++.  ..|.++.+|+
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  246 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLT  246 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCC
Confidence            45667788888888887764  357778888888888888876544  77788888888888888754  4577788888


Q ss_pred             EEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhcccc
Q 007628           92 YLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL  171 (595)
Q Consensus        92 ~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l  171 (595)
                      +|||++|+|++... .....+|++|+|++|++.+... .....+|++|+|++|++++...  +..+ .+|++|+|++|++
T Consensus       247 ~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l-~~L~~L~L~~n~l  321 (466)
T 1o6v_A          247 DLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNL-KNLTYLTLYFNNI  321 (466)
T ss_dssp             EEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGC-TTCSEEECCSSCC
T ss_pred             EEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCC-CCCCEEECcCCcC
Confidence            88888888875443 2223678888888888876443 4445678888888888876544  5555 7788888888888


Q ss_pred             CCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628          172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP  247 (595)
Q Consensus       172 ~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~  247 (595)
                      .+..+  +..+.+|++|+|++|.+++.  ..+..|.+|++|+|++|+|++..+  +.++.+|+.|+|++|.|++..
T Consensus       322 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          322 SDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             SCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred             CCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence            87654  67888888888888888854  567888888888888888887765  788888888888888888753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=3.9e-24  Score=223.38  Aligned_cols=218  Identities=18%  Similarity=0.283  Sum_probs=119.6

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY   92 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~   92 (595)
                      ..+.+|++|+|++|+|+++..  |.++.+|++|+|++|+|+++  ..|.++.+|++|+|++|+|++...  +.++.+|++
T Consensus        63 ~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~  136 (347)
T 4fmz_A           63 EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYS  136 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCE
T ss_pred             hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeE
Confidence            344555566666555554322  55555666666666655542  245556666666666665553322  555566666


Q ss_pred             EEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           93 LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        93 LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      |+|++|.+.+.+.......+|++|+|++|++.+... .....+|++|++++|++++...  +..+ .+|++|++++|++.
T Consensus       137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~  212 (347)
T 4fmz_A          137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASL-TSLHYFTAYVNQIT  212 (347)
T ss_dssp             EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGC-TTCCEEECCSSCCC
T ss_pred             EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCC-CccceeecccCCCC
Confidence            666665444344332222566666666666553322 3334566677777776664332  3333 45555555555555


Q ss_pred             CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      +...  +..+.+|++|+|++|.+++...  +..+.+|++|+|++|+|++.  ..+..+.+|++|+|++|.|++.
T Consensus       213 ~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~  280 (347)
T 4fmz_A          213 DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI  280 (347)
T ss_dssp             CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC
T ss_pred             CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC
Confidence            3322  5556666666666666653322  56666666666666666643  4566666666666666666653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=6.5e-25  Score=222.63  Aligned_cols=208  Identities=19%  Similarity=0.206  Sum_probs=182.9

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY   92 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~   92 (595)
                      ..++.|+.|++++|+|+.+  ..|.++.+|++|+|++|+|++.  ..|.++.+|++|+|++|+|++.....|.++.+|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence            4567899999999999864  4688999999999999999974  58999999999999999999888888999999999


Q ss_pred             EEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccc
Q 007628           93 LDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDN  170 (595)
Q Consensus        93 LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~  170 (595)
                      |+|++|+|++.....+.. .+|++|+|++|++++.....+. ..+|++|+|++|+|++.....|+.+ .+|++|+|++|+
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~N~  192 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL-TQLKDLRLYQNQ  192 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSC
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC-ccCCEEECCCCc
Confidence            999999999665554443 8999999999999977666654 4789999999999998877777777 899999999999


Q ss_pred             cCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCC
Q 007628          171 LTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPN  232 (595)
Q Consensus       171 l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~  232 (595)
                      +.+.....|+.+.+|++|+|++|.+.+.       +.+|+.|++.+|+++|.++.+++.+..
T Consensus       193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            9998888899999999999999998743       567899999999999999999887664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=2e-24  Score=216.23  Aligned_cols=180  Identities=20%  Similarity=0.232  Sum_probs=122.1

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      .++.|++++++++. ++..+.  .+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|+|+
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            56789999999986 455544  589999999999999988899999999999999999998888889999999999999


Q ss_pred             CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628           97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP  176 (595)
Q Consensus        97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip  176 (595)
                      +|+|++.....+..                      ..+|++|+|++|+|+                         +...
T Consensus        92 ~n~l~~~~~~~~~~----------------------l~~L~~L~L~~N~l~-------------------------~~~~  124 (251)
T 3m19_A           92 NNQLASLPLGVFDH----------------------LTQLDKLYLGGNQLK-------------------------SLPS  124 (251)
T ss_dssp             TSCCCCCCTTTTTT----------------------CTTCCEEECCSSCCC-------------------------CCCT
T ss_pred             CCcccccChhHhcc----------------------cCCCCEEEcCCCcCC-------------------------CcCh
Confidence            99998433222111                      122333333333333                         2333


Q ss_pred             CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      ..|..+.+|++|+|++|+|++.....|+.+.+|++|+|++|+|++.....|.++.+|+.|+|++|.|++.
T Consensus       125 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            3344555566666666666544444555566666666666666555555555556666666666666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.91  E-value=6.2e-24  Score=231.76  Aligned_cols=221  Identities=21%  Similarity=0.357  Sum_probs=117.0

Q ss_pred             CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628           12 SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK   91 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~   91 (595)
                      +..+.+|++|||++|+|+++..  |.++.+|++|+|++|+|.++..  |++|.+|++|+|++|+|++...  |.++.+|+
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~  137 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLN  137 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCC
Confidence            3456777888888887776533  7777777777777777775543  7777777777777777764422  55666666


Q ss_pred             EEEccCCCCCCCCCcc--------------------c-cccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCc
Q 007628           92 YLDLRFNEFEGSVPSK--------------------L-FDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCI  150 (595)
Q Consensus        92 ~LdLs~N~l~g~ip~~--------------------l-~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~i  150 (595)
                      +|||++|+|++. ...                    + ...+|++|+|++|++.+. .......+|++|++++|++++..
T Consensus       138 ~L~l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~  215 (466)
T 1o6v_A          138 RLELSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT  215 (466)
T ss_dssp             EEEEEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred             EEECCCCccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccc
Confidence            666666655431 110                    0 013455555555554422 11222233444444444443322


Q ss_pred             C--------------------cccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCcc
Q 007628          151 P--------------------GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLE  210 (595)
Q Consensus       151 p--------------------~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~  210 (595)
                      .                    ..+..+ .+|++|+|++|++.+...  |..+.+|++|+|++|.+++...  +..+.+|+
T Consensus       216 ~~~~l~~L~~L~l~~n~l~~~~~l~~l-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  290 (466)
T 1o6v_A          216 PLGILTNLDELSLNGNQLKDIGTLASL-TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT  290 (466)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCGGGGGC-TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             cccccCCCCEEECCCCCcccchhhhcC-CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccC
Confidence            2                    223333 445555555555543322  4455555555555555553222  44555555


Q ss_pred             EEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628          211 QLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP  247 (595)
Q Consensus       211 ~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~  247 (595)
                      +|+|++|+|++...  +..+.+|+.|+|++|+|++..
T Consensus       291 ~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~  325 (466)
T 1o6v_A          291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS  325 (466)
T ss_dssp             EEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred             eEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence            55555555554322  455555555555555555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.91  E-value=6e-24  Score=231.96  Aligned_cols=208  Identities=17%  Similarity=0.191  Sum_probs=166.9

Q ss_pred             CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628           11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL   90 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L   90 (595)
                      ++..+.+|++|+|++|+|+++   .|+++.+|++|+|++|+|+++   .|+++.+|++|+|++|+|+++ +  |.++.+|
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L  129 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLL  129 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCC-C--CTTCTTC
T ss_pred             hhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCee-c--CCCCCcC
Confidence            356778999999999999985   389999999999999999975   389999999999999999974 3  8899999


Q ss_pred             CEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccc
Q 007628           91 KYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDN  170 (595)
Q Consensus        91 ~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~  170 (595)
                      ++|+|++|+|++. . .....+|++|+|++|++.+.+ ......+|++|+|++|+|++. +  ++.+ .+|++|++++|+
T Consensus       130 ~~L~l~~N~l~~l-~-l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l-~--l~~l-~~L~~L~l~~N~  202 (457)
T 3bz5_A          130 TYLNCARNTLTEI-D-VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITEL-D--VSQN-KLLNRLNCDTNN  202 (457)
T ss_dssp             CEEECTTSCCSCC-C-CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCC-C--CTTC-TTCCEEECCSSC
T ss_pred             CEEECCCCcccee-c-cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCcccee-c--cccC-CCCCEEECcCCc
Confidence            9999999999963 2 222378999999999766666 344557899999999999874 3  6666 789999999999


Q ss_pred             cCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccC
Q 007628          171 LTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF  243 (595)
Q Consensus       171 l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~L  243 (595)
                      +++.   .|+.+.+|++|+|++|+|++ ++  ++.+.+|++|+|++|+|++....   .+.+|+.|++++|+|
T Consensus       203 l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~---~l~~L~~L~l~~n~L  266 (457)
T 3bz5_A          203 ITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTDL  266 (457)
T ss_dssp             CSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT---TCTTCCEEECTTCCC
T ss_pred             CCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH---HCCCCCEEeccCCCC
Confidence            9875   48888999999999999986 44  88889999999999999876533   344444444444433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=9.1e-25  Score=225.66  Aligned_cols=223  Identities=17%  Similarity=0.158  Sum_probs=177.5

Q ss_pred             ceeEEEccCCCCCCCCch---hhcCCCCCcEEEccCCcCCCCCchhh--cCCCCCCEEeccCCcCCCcCc----hhcCCC
Q 007628           17 VVASIDLNHADIAGYLPP---EIGRLTDLAIFHINSNRFCGVVPSTF--RRLKLLYEVDLSNNRFVGKFP----KLFLSL   87 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~---~~~~L~~L~~L~Ls~N~l~~~lp~~~--~~L~~L~~L~Ls~N~Lsg~lp----~~l~~L   87 (595)
                      .++.|+|+++++....-.   .+..+.+|++|+|++|+|.+.++..|  .++.+|++|+|++|+|++.+.    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            467888888877542111   12345679999999999999998888  899999999999999997544    455689


Q ss_pred             CCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccC--CC-cc--cCCCCceeEEeeccCCCCCc--Ccc-ccccc
Q 007628           88 PKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFG--IP-EN--LGNSPVSVLVFANNDLGGCI--PGS-IGKMG  158 (595)
Q Consensus        88 ~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~--~p-~~--l~~~~L~~L~L~~N~l~~~i--p~~-l~~l~  158 (595)
                      .+|++|+|++|+|.+.....+.. .+|++|+|++|++.+.  +. ..  ....+|++|+|++|+|+..-  ... +..+ 
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l-  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG-  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT-
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC-
Confidence            99999999999998766655544 7899999999997642  11 12  23467999999999997321  112 3444 


Q ss_pred             chhhHHHhhccccCCCCCCccCCC---ccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcE
Q 007628          159 KTLNEIILMNDNLTGCLPPQIGML---KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQN  235 (595)
Q Consensus       159 ~~L~~L~Ls~N~l~g~ip~~~~~L---~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~  235 (595)
                      .+|++|+|++|+|.+.++..+..+   .+|++|+|++|+|+ .++..+.  .+|++|+|++|+|++.  ..+..+.+|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~--~~~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA--PQPDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC--CCTTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC--chhhhCCCccE
Confidence            789999999999999888888887   69999999999999 7777775  7999999999999974  23788899999


Q ss_pred             EEcccccCCC
Q 007628          236 FTYSFNYFTG  245 (595)
Q Consensus       236 L~Ls~N~Lsg  245 (595)
                      |+|++|.|+.
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            9999999975

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.90  E-value=7.8e-24  Score=214.54  Aligned_cols=224  Identities=19%  Similarity=0.218  Sum_probs=179.5

Q ss_pred             EEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCC
Q 007628           20 SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNE   99 (595)
Q Consensus        20 ~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~   99 (595)
                      .++..+.++.. ++..+.  .+|++|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|||++|+
T Consensus        11 ~~~c~~~~l~~-ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           11 TYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EEECTTSCCSS-CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             eEEecCCCccc-cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            56666666665 444443  579999999999998888899999999999999999998777889999999999999999


Q ss_pred             CCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCC-CCCc
Q 007628          100 FEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC-LPPQ  178 (595)
Q Consensus       100 l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~-ip~~  178 (595)
                      |++.....+                      ....+|++|++++|++++.....++.+ .+|++|+|++|++.+. ++..
T Consensus        88 l~~~~~~~~----------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~l~~~  144 (276)
T 2z62_A           88 IQSLALGAF----------------------SGLSSLQKLVAVETNLASLENFPIGHL-KTLKELNVAHNLIQSFKLPEY  144 (276)
T ss_dssp             CCEECTTTT----------------------TTCTTCCEEECTTSCCCCSTTCCCTTC-TTCCEEECCSSCCCCCCCCGG
T ss_pred             cCccChhhh----------------------cCCccccEEECCCCCccccCchhcccC-CCCCEEECcCCccceecCchh
Confidence            873322111                      123678889999999998777778888 8999999999999874 6889


Q ss_pred             cCCCccceEEeccCccccCCCCCCcCCCCCcc----EEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccc-
Q 007628          179 IGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLE----QLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAA-  253 (595)
Q Consensus       179 ~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~----~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~-  253 (595)
                      |+++.+|++|+|++|+|++.....|..+.+|+    +|+|++|+|++.....+.. .+|+.|+|++|+|++........ 
T Consensus       145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l  223 (276)
T 2z62_A          145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRL  223 (276)
T ss_dssp             GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTC
T ss_pred             hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhccc
Confidence            99999999999999999987777787777777    8999999999766555544 48999999999999877655432 


Q ss_pred             cCCCCcccccCCCCCCC
Q 007628          254 AGGGGRMMAARPADCSK  270 (595)
Q Consensus       254 ~~~~~~~~~~~~~~c~~  270 (595)
                      .......+.+|.+.|+.
T Consensus       224 ~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          224 TSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CSCCEEECCSSCBCCCT
T ss_pred             ccccEEEccCCcccccC
Confidence            33444556777777754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.7e-23  Score=214.79  Aligned_cols=179  Identities=21%  Similarity=0.253  Sum_probs=144.7

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      ..++.|+|++|+|+++....|.++.+|++|+|++|+|+++..  ++.+.+|++|+|++|+|+ .++..+.++.+|++|+|
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            579999999999999888999999999999999999996533  388999999999999999 67788899999999999


Q ss_pred             cCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCC
Q 007628           96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC  174 (595)
Q Consensus        96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~  174 (595)
                      ++|+|++.....+.. .+|++|                       +|++|+|++.....|..+ .+|++|+|++|+|++.
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L-----------------------~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQEL-----------------------YLKGNELKTLPPGLLTPT-PKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEE-----------------------ECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCSCC
T ss_pred             CCCcCcccCHHHHcCCCCCCEE-----------------------ECCCCCCCccChhhcccc-cCCCEEECCCCcCCcc
Confidence            999998543333322 444444                       455555554444444445 6778888888888766


Q ss_pred             CCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCC
Q 007628          175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV  222 (595)
Q Consensus       175 ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~  222 (595)
                      ....|..+.+|++|+|++|+|+ .++..+..+.+|+.|+|++|.+...
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence            6667788999999999999999 7888888889999999999998754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.90  E-value=9.4e-24  Score=209.54  Aligned_cols=196  Identities=14%  Similarity=0.161  Sum_probs=111.3

Q ss_pred             CCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCc-CCCcCchhcCCCCCCCEEEccC-CCCCCCCCccccc-cCCCeee
Q 007628           41 DLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR-FVGKFPKLFLSLPKLKYLDLRF-NEFEGSVPSKLFD-KDLDAIF  117 (595)
Q Consensus        41 ~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~-Lsg~lp~~l~~L~~L~~LdLs~-N~l~g~ip~~l~~-~~L~~L~  117 (595)
                      +|++|+|++|+|+++...+|+++.+|++|+|++|+ |+++....|.++.+|++|+|++ |+|++.....+.. .+|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            45555555555554444455555555555555554 4433344455555555555554 5554222121111 3444444


Q ss_pred             ccCCccccCCCcccCCCCce---eEEeecc-CCCCCcCcccccccchhh-HHHhhccccCCCCCCccCCCccceEEeccC
Q 007628          118 LNDNRFQFGIPENLGNSPVS---VLVFANN-DLGGCIPGSIGKMGKTLN-EIILMNDNLTGCLPPQIGMLKNLTVFDVSF  192 (595)
Q Consensus       118 L~~N~l~~~~p~~l~~~~L~---~L~L~~N-~l~~~ip~~l~~l~~~L~-~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~  192 (595)
                      |++|++++ ++.+.....|+   +|+|++| ++++.....|..+ .+|+ +|+|++|++. .++..+....+|++|+|++
T Consensus       112 l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l-~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~  188 (239)
T 2xwt_C          112 IFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL-CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK  188 (239)
T ss_dssp             EEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTT-BSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred             CCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccch-hcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence            44444443 22222223344   7777777 6665555556655 6777 7777777776 4444333336788888888


Q ss_pred             cc-ccCCCCCCcCCC-CCccEEEccCCcCCCCCchhccCCCCCcEEEccccc
Q 007628          193 NH-LQGSLPSSIGNM-KSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY  242 (595)
Q Consensus       193 N~-L~g~lP~~l~~L-~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~  242 (595)
                      |. |++...+.|..+ .+|++|+|++|+|++. +..  .+.+|+.|+++++.
T Consensus       189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC-
T ss_pred             CCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCcc
Confidence            84 775556677777 7888888888888743 332  56677788777653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=2.5e-24  Score=222.57  Aligned_cols=210  Identities=17%  Similarity=0.246  Sum_probs=133.9

Q ss_pred             EccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCC
Q 007628           22 DLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFE  101 (595)
Q Consensus        22 dLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~  101 (595)
                      .+..+++++.+  .+.++.+|+.|+|++|+|..+ . .|..+.+|++|+|++|+|++...  |.++.+|++|+|++|+|+
T Consensus        25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (308)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence            34444444321  233455556666666655532 2 45556666666666666553322  555666666666666655


Q ss_pred             CCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCC
Q 007628          102 GSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM  181 (595)
Q Consensus       102 g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~  181 (595)
                      + +.......+|++|+|++|++++. .......+|++|+|++|++++...  ++.+ .+|++|+|++|++.+...  |..
T Consensus        99 ~-~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~~~~--l~~  171 (308)
T 1h6u_A           99 N-VSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISP--LAGL-TNLQYLSIGNAQVSDLTP--LAN  171 (308)
T ss_dssp             C-CGGGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG--GTT
T ss_pred             C-chhhcCCCCCCEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCcCcc--ccCC-CCccEEEccCCcCCCChh--hcC
Confidence            3 22222225566666666655542 223334567777777777765433  5555 678888888888875432  788


Q ss_pred             CccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       182 L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      +.+|++|+|++|.|++...  +..+.+|++|+|++|+|++..  .+..+.+|+.|+|++|.|++...
T Consensus       172 l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          172 LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred             CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence            8899999999999885432  788899999999999998665  48888999999999999887433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=8.2e-26  Score=240.36  Aligned_cols=234  Identities=17%  Similarity=0.183  Sum_probs=187.9

Q ss_pred             CCCceeEEEccCCCCCCCCc----hhhcCCCCCcEEEccCCc---CCCCCchhh-------cCCCCCCEEeccCCcCCC-
Q 007628           14 SLRVVASIDLNHADIAGYLP----PEIGRLTDLAIFHINSNR---FCGVVPSTF-------RRLKLLYEVDLSNNRFVG-   78 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp----~~~~~L~~L~~L~Ls~N~---l~~~lp~~~-------~~L~~L~~L~Ls~N~Lsg-   78 (595)
                      .+.+|+.|+|++|+|.+...    ..|.++.+|++|+|++|.   |.+.++..+       .++.+|++|+|++|+|++ 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            45679999999999987633    447789999999999964   444555554       789999999999999997 


Q ss_pred             ---cCchhcCCCCCCCEEEccCCCCCCCCCccccc--------------cCCCeeeccCCccc-cCCC---ccc-CCCCc
Q 007628           79 ---KFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD--------------KDLDAIFLNDNRFQ-FGIP---ENL-GNSPV  136 (595)
Q Consensus        79 ---~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~--------------~~L~~L~L~~N~l~-~~~p---~~l-~~~~L  136 (595)
                         .+...|.++.+|++|+|++|+|++.....+..              .+|++|+|++|++. +.+.   ..+ ...+|
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  189 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  189 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence               46778899999999999999997433333322              58999999999987 3333   122 34689


Q ss_pred             eeEEeeccCCCC-----CcCcccccccchhhHHHhhccccC----CCCCCccCCCccceEEeccCccccCC----CCCCc
Q 007628          137 SVLVFANNDLGG-----CIPGSIGKMGKTLNEIILMNDNLT----GCLPPQIGMLKNLTVFDVSFNHLQGS----LPSSI  203 (595)
Q Consensus       137 ~~L~L~~N~l~~-----~ip~~l~~l~~~L~~L~Ls~N~l~----g~ip~~~~~L~~L~~LdLs~N~L~g~----lP~~l  203 (595)
                      ++|+|++|+|+.     .+...+..+ .+|++|+|++|.|+    +.+...|..+.+|++|+|++|.|++.    +...|
T Consensus       190 ~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l  268 (386)
T 2ca6_A          190 HTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF  268 (386)
T ss_dssp             CEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             CEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence            999999999983     233366666 78999999999996    56777889999999999999999865    45566


Q ss_pred             --CCCCCccEEEccCCcCCC----CCchhc-cCCCCCcEEEcccccCCCCCC
Q 007628          204 --GNMKSLEQLNVAHNRFTG----VIPSSV-CQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       204 --~~L~~L~~L~Ls~N~Lsg----~iP~~l-~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                        +.+.+|++|+|++|+|++    .++..+ .++.+|+.|+|++|.|++...
T Consensus       269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence              448999999999999997    477776 668999999999999998763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.90  E-value=4e-23  Score=225.23  Aligned_cols=83  Identities=33%  Similarity=0.443  Sum_probs=34.4

Q ss_pred             hhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCC--CCchhccCC-------
Q 007628          160 TLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTG--VIPSSVCQL-------  230 (595)
Q Consensus       160 ~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg--~iP~~l~~l-------  230 (595)
                      +|++|+|++|++.+ ++..   +.+|++|+|++|+|+ .++.   .+.+|++|+|++|+|++  .++.+++++       
T Consensus       318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~  389 (454)
T 1jl5_A          318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLA  389 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---
T ss_pred             cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccc
Confidence            45555555555553 3322   345666666666665 3444   34566666666666666  555555555       


Q ss_pred             ------CCCcEEEcccccCCC--CCCcc
Q 007628          231 ------PNLQNFTYSFNYFTG--EPPSC  250 (595)
Q Consensus       231 ------~~L~~L~Ls~N~Lsg--~~p~~  250 (595)
                            .+|++|||++|+|++  .++..
T Consensus       390 ~i~~~~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          390 EVPELPQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             ----------------------------
T ss_pred             ccccccCcCCEEECCCCcCCccccchhh
Confidence                  556666666666665  44443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.2e-22  Score=205.65  Aligned_cols=185  Identities=20%  Similarity=0.284  Sum_probs=151.7

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      .+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|+|
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            46999999999999988889999999999999999999877778899999999999999999877788999999999999


Q ss_pred             cCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC
Q 007628           96 RFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL  175 (595)
Q Consensus        96 s~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i  175 (595)
                      ++|+|++.....+..                      ..+|++|+|++|+|++.....|..+ .+|++|+|++|++.+..
T Consensus       117 ~~n~l~~~~~~~~~~----------------------l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~  173 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDS----------------------LTKLTYLSLGYNELQSLPKGVFDKL-TSLKELRLYNNQLKRVP  173 (270)
T ss_dssp             CSSCCCCCCTTTTTT----------------------CTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCC
T ss_pred             CCCccCeeCHHHhCc----------------------CcCCCEEECCCCcCCccCHhHccCC-cccceeEecCCcCcEeC
Confidence            999998544332211                      2344555555555554444445555 67888888888888777


Q ss_pred             CCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628          176 PPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI  223 (595)
Q Consensus       176 p~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i  223 (595)
                      ...|..+.+|++|+|++|.|++.....|..+.+|++|+|++|.+....
T Consensus       174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            777889999999999999999776777899999999999999987653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.89  E-value=3.3e-23  Score=232.09  Aligned_cols=229  Identities=17%  Similarity=0.195  Sum_probs=186.7

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCC--CCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCG--VVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY   92 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~--~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~   92 (595)
                      +..|+.+++.+|.+.+.  ..+..+.+|++|++++|.+..  .....+..+.+|++|++.+|.+.+ +...|..+.+|+.
T Consensus       348 l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~  424 (635)
T 4g8a_A          348 LKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEH  424 (635)
T ss_dssp             CTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCE
T ss_pred             chhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccc
Confidence            34455555555544432  233457788888888888753  456667788888888888888773 4556788999999


Q ss_pred             EEccCCCCCCCCCccccc--cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCC-CCcCcccccccchhhHHHhhc
Q 007628           93 LDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLG-GCIPGSIGKMGKTLNEIILMN  168 (595)
Q Consensus        93 LdLs~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~-~~ip~~l~~l~~~L~~L~Ls~  168 (595)
                      +++++|++.+.+....+.  .+|+.++++.|++.+.....+.. ..+++|+|++|.+. +.+++.|..+ .+|++|+|++
T Consensus       425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l-~~L~~L~Ls~  503 (635)
T 4g8a_A          425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQ  503 (635)
T ss_dssp             EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTT
T ss_pred             hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc-cccCEEECCC
Confidence            999988877666655554  78999999999998877766654 67999999999754 4567777777 8999999999


Q ss_pred             cccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCC-CCCcEEEcccccCCCCC
Q 007628          169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQL-PNLQNFTYSFNYFTGEP  247 (595)
Q Consensus       169 N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l-~~L~~L~Ls~N~Lsg~~  247 (595)
                      |+|++..+.+|++|.+|++|+|++|+|++..+..|..|.+|++|||++|+|++..+++|..+ .+|++|+|++|.|+++.
T Consensus       504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            99999999999999999999999999998888899999999999999999999999999988 68999999999998753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.4e-22  Score=202.83  Aligned_cols=180  Identities=18%  Similarity=0.229  Sum_probs=139.9

Q ss_pred             CCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeecc
Q 007628           40 TDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLN  119 (595)
Q Consensus        40 ~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~  119 (595)
                      .++++|+++++.|+ .++..+.  .+|++|+|++|+|++.....|.++.+|++|+|++|+|++.....+           
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----------   79 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF-----------   79 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT-----------
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh-----------
Confidence            45778999999998 4555554  689999999999998888889999999999999998874332211           


Q ss_pred             CCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCC
Q 007628          120 DNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSL  199 (595)
Q Consensus       120 ~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~l  199 (595)
                                                         ..+ .+|++|+|++|+|++.....|..+.+|++|+|++|+|++..
T Consensus        80 -----------------------------------~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  123 (251)
T 3m19_A           80 -----------------------------------DDL-TELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP  123 (251)
T ss_dssp             -----------------------------------TTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             -----------------------------------ccC-CcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC
Confidence                                               222 34555555555555555567788999999999999999777


Q ss_pred             CCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcccccc-CCCCcccccCCCCCC
Q 007628          200 PSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAAA-GGGGRMMAARPADCS  269 (595)
Q Consensus       200 P~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~~-~~~~~~~~~~~~~c~  269 (595)
                      ...|..+.+|++|+|++|+|++.....|.++.+|++|+|++|+|++.....+... ......+.+|.+.|.
T Consensus       124 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            7778999999999999999998777789999999999999999998877544332 344445666777665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.6e-24  Score=228.76  Aligned_cols=231  Identities=13%  Similarity=0.165  Sum_probs=172.2

Q ss_pred             CceeEEEccCCCCCCCCc----hhhcCCC-CCcEEEccCCcCCCCCchhhcCC-----CCCCEEeccCCcCCCcCchh--
Q 007628           16 RVVASIDLNHADIAGYLP----PEIGRLT-DLAIFHINSNRFCGVVPSTFRRL-----KLLYEVDLSNNRFVGKFPKL--   83 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp----~~~~~L~-~L~~L~Ls~N~l~~~lp~~~~~L-----~~L~~L~Ls~N~Lsg~lp~~--   83 (595)
                      ++|+.|||++|+|++...    +.|.++. +|++|+|++|+|++.....|..+     .+|++|+|++|+|++.....  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            458999999999888766    6777888 89999999999988777777665     88999999999988666553  


Q ss_pred             --cCCC-CCCCEEEccCCCCCCCCCccccc------cCCCeeeccCCccccCCCccc----C-C-CCceeEEeeccCCCC
Q 007628           84 --FLSL-PKLKYLDLRFNEFEGSVPSKLFD------KDLDAIFLNDNRFQFGIPENL----G-N-SPVSVLVFANNDLGG  148 (595)
Q Consensus        84 --l~~L-~~L~~LdLs~N~l~g~ip~~l~~------~~L~~L~L~~N~l~~~~p~~l----~-~-~~L~~L~L~~N~l~~  148 (595)
                        |..+ .+|++|||++|+|++.....+..      .+|++|+|++|++.+.....+    . . .+|++|+|++|+|++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              4444 78999999999987555443322      489999999998885443332    2 2 379999999999887


Q ss_pred             CcCcccccc----cchhhHHHhhccccCCC----CCCccCC-CccceEEeccCccccCCCC----CCcCCCCCccEEEcc
Q 007628          149 CIPGSIGKM----GKTLNEIILMNDNLTGC----LPPQIGM-LKNLTVFDVSFNHLQGSLP----SSIGNMKSLEQLNVA  215 (595)
Q Consensus       149 ~ip~~l~~l----~~~L~~L~Ls~N~l~g~----ip~~~~~-L~~L~~LdLs~N~L~g~lP----~~l~~L~~L~~L~Ls  215 (595)
                      .....|+++    ..+|++|+|++|+|.+.    +...|.. ..+|++|||++|.|++...    ..+..+.+|++|+|+
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            766555432    14788999999988853    3334444 3589999999999876433    345777889999999


Q ss_pred             CCcCCCC-------CchhccCCCCCcEEEcccccCCCC
Q 007628          216 HNRFTGV-------IPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       216 ~N~Lsg~-------iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      +|.|.+.       +...+.++.+|+.|||++|.|.+.
T Consensus       262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            9985543       233567788899999999998765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=2.2e-24  Score=227.77  Aligned_cols=229  Identities=16%  Similarity=0.152  Sum_probs=184.4

Q ss_pred             EEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCc----hhhcCCC-CCCEEeccCCcCCCcCchhcCCC-----CC
Q 007628           20 SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP----STFRRLK-LLYEVDLSNNRFVGKFPKLFLSL-----PK   89 (595)
Q Consensus        20 ~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp----~~~~~L~-~L~~L~Ls~N~Lsg~lp~~l~~L-----~~   89 (595)
                      .++|++|++++.+++.+....+|++|||++|+|++...    +.|.++. +|++|+|++|+|++.....|..+     .+
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            57899999999988888888889999999999998777    7888998 99999999999998767666664     99


Q ss_pred             CCEEEccCCCCCCCCCccccc------cCCCeeeccCCccccCCCcccC------CCCceeEEeeccCCCCCcCccc---
Q 007628           90 LKYLDLRFNEFEGSVPSKLFD------KDLDAIFLNDNRFQFGIPENLG------NSPVSVLVFANNDLGGCIPGSI---  154 (595)
Q Consensus        90 L~~LdLs~N~l~g~ip~~l~~------~~L~~L~L~~N~l~~~~p~~l~------~~~L~~L~L~~N~l~~~ip~~l---  154 (595)
                      |++|||++|+|++.....+..      .+|++|+|++|++++.....+.      ...|++|+|++|+|++.....+   
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            999999999998766554433      5899999999999876554432      2589999999999996554444   


Q ss_pred             -ccccchhhHHHhhccccCCCCCCccCC----C-ccceEEeccCccccCC----CCCCcCC-CCCccEEEccCCcCCCCC
Q 007628          155 -GKMGKTLNEIILMNDNLTGCLPPQIGM----L-KNLTVFDVSFNHLQGS----LPSSIGN-MKSLEQLNVAHNRFTGVI  223 (595)
Q Consensus       155 -~~l~~~L~~L~Ls~N~l~g~ip~~~~~----L-~~L~~LdLs~N~L~g~----lP~~l~~-L~~L~~L~Ls~N~Lsg~i  223 (595)
                       ..+..+|++|+|++|+|++....+|..    + .+|++|||++|.|++.    +...+.. ..+|++|+|++|+|++..
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~  241 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS  241 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence             444348999999999998776654443    4 6999999999999863    3445555 459999999999998754


Q ss_pred             c----hhccCCCCCcEEEcccccCCCCCC
Q 007628          224 P----SSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       224 P----~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      .    ..+..+.+|++|+|++|.|++...
T Consensus       242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~  270 (362)
T 3goz_A          242 LENLKLLKDSLKHLQTVYLDYDIVKNMSK  270 (362)
T ss_dssp             HHHHHHTTTTTTTCSEEEEEHHHHTTCCH
T ss_pred             HHHHHHHHhcCCCccEEEeccCCccccCH
Confidence            3    445778999999999999765543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=5.2e-23  Score=212.44  Aligned_cols=202  Identities=15%  Similarity=0.133  Sum_probs=161.6

Q ss_pred             CCCcEEEccCCcCCCCCch---hhcCCCCCCEEeccCCcCCCcCchhc--CCCCCCCEEEccCCCCCCCCCccc-----c
Q 007628           40 TDLAIFHINSNRFCGVVPS---TFRRLKLLYEVDLSNNRFVGKFPKLF--LSLPKLKYLDLRFNEFEGSVPSKL-----F  109 (595)
Q Consensus        40 ~~L~~L~Ls~N~l~~~lp~---~~~~L~~L~~L~Ls~N~Lsg~lp~~l--~~L~~L~~LdLs~N~l~g~ip~~l-----~  109 (595)
                      ..++.|+|+++++....-.   .+..+.+|++|+|++|+|.+.++..+  .++.+|++|||++|+|++.+....     .
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3478889998887642111   12345779999999999999998888  899999999999999997655221     1


Q ss_pred             ccCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCC--cC--cccccccchhhHHHhhccccCCCCCC----ccC
Q 007628          110 DKDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGC--IP--GSIGKMGKTLNEIILMNDNLTGCLPP----QIG  180 (595)
Q Consensus       110 ~~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~--ip--~~l~~l~~~L~~L~Ls~N~l~g~ip~----~~~  180 (595)
                      ..+|++|+|++|++.+.....+. ..+|++|+|++|++.+.  +.  ..+..+ .+|++|+|++|+++. +..    .++
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~-l~~~~~~l~~  221 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF-PAIQNLALRNTGMET-PTGVCAALAA  221 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS-CCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC-CCCCEEECCCCCCCc-hHHHHHHHHh
Confidence            37999999999999887776664 47899999999998753  21  223455 789999999999963 222    256


Q ss_pred             CCccceEEeccCccccCCCCCCcCCC---CCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          181 MLKNLTVFDVSFNHLQGSLPSSIGNM---KSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       181 ~L~~L~~LdLs~N~L~g~lP~~l~~L---~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      .+.+|++|||++|+|++.++..+..+   .+|++|+|++|+|+ .++..+.  .+|++|||++|+|++.
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC
Confidence            78999999999999998888888777   69999999999999 5666664  7999999999999985

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1.7e-22  Score=208.88  Aligned_cols=193  Identities=17%  Similarity=0.280  Sum_probs=165.5

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .+.+|+.|+|++|+|+.+  ..|.++.+|++|+|++|+|.++..  |.++.+|++|+|++|+|++.  ..|.++.+|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence            467899999999999875  368999999999999999997544  99999999999999999964  369999999999


Q ss_pred             EccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628           94 DLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      +|++|+|++ +.......+|++|+|++|++++... .....+|++|+|++|++++...  +..+ .+|++|+|++|++.+
T Consensus       113 ~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          113 DLTSTQITD-VTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANL-SKLTTLKADDNKISD  187 (308)
T ss_dssp             ECTTSCCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCCC
T ss_pred             ECCCCCCCC-chhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCC-CCCCEEECCCCccCc
Confidence            999999985 4443333899999999999986543 4455789999999999987544  7777 889999999999986


Q ss_pred             CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCC
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTG  221 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg  221 (595)
                      ...  |..+.+|++|+|++|.|++..  .+..+.+|++|+|++|.|++
T Consensus       188 ~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          188 ISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             Chh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            543  889999999999999999655  48999999999999999986

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.88  E-value=2.9e-23  Score=226.33  Aligned_cols=213  Identities=21%  Similarity=0.229  Sum_probs=102.5

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCC-------------CEEeccCCcCCCcC
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLL-------------YEVDLSNNRFVGKF   80 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L-------------~~L~Ls~N~Lsg~l   80 (595)
                      +.+.|+.|+|++|+| +.++.+|++|++|++|+|++|++.|.++.+|+++.+|             ++|+|++|+|++ +
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence            346777788888877 5677778888888888888777777777777666543             556666665553 1


Q ss_pred             chhc-----------------CCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeec
Q 007628           81 PKLF-----------------LSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFAN  143 (595)
Q Consensus        81 p~~l-----------------~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~  143 (595)
                      +...                 ..+.+|++|||++|+|++ ++..  ..+|++|+|++|++++ ++++....+|++|++++
T Consensus        87 p~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~--~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~  162 (454)
T 1jl5_A           87 PELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL--PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDN  162 (454)
T ss_dssp             CSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC--CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCS
T ss_pred             CCCcCCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccCC--CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCC
Confidence            2110                 012344444444444442 1111  1356666666666654 44333335566666666


Q ss_pred             cCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628          144 NDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI  223 (595)
Q Consensus       144 N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i  223 (595)
                      |++++ ++..+    .+|++|+|++|++.+ ++ +|++|.+|++|+|++|+|++ ++..+   .+|++|+|++|+|+ .+
T Consensus       163 N~l~~-lp~~~----~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~l  230 (454)
T 1jl5_A          163 NSLKK-LPDLP----PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-EL  230 (454)
T ss_dssp             SCCSC-CCCCC----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SC
T ss_pred             CcCcc-cCCCc----ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cc
Confidence            66654 33322    355666666666664 33 46666666666666666653 33221   35555555555555 34


Q ss_pred             chhccCCCCCcEEEcccccCCC
Q 007628          224 PSSVCQLPNLQNFTYSFNYFTG  245 (595)
Q Consensus       224 P~~l~~l~~L~~L~Ls~N~Lsg  245 (595)
                      + .|+++.+|++|++++|+|++
T Consensus       231 p-~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          231 P-ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             C-CCTTCTTCCEEECCSSCCSS
T ss_pred             c-ccCCCCCCCEEECCCCcCCc
Confidence            4 35566666666666666655

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=4.3e-24  Score=221.88  Aligned_cols=219  Identities=17%  Similarity=0.159  Sum_probs=102.5

Q ss_pred             eeEEEccCCCCCCCCchhhcCC--CCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc-CchhcCCCCCCCEEE
Q 007628           18 VASIDLNHADIAGYLPPEIGRL--TDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK-FPKLFLSLPKLKYLD   94 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L--~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~-lp~~l~~L~~L~~Ld   94 (595)
                      ++.|||+++++.   ...+.++  .+|+.|+|++|.|.+.... +.++.+|++|+|++|+|++. +...+.++.+|++|+
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~  124 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS  124 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence            455555555544   2334444  4555555555555544333 33455555555555555433 444455555555555


Q ss_pred             ccCCCCCCCCCccccc-cCCCeeeccCC-ccccC-CCccc-CCCCceeEEeecc-CCCCC-cCcccccccc-hhhHHHhh
Q 007628           95 LRFNEFEGSVPSKLFD-KDLDAIFLNDN-RFQFG-IPENL-GNSPVSVLVFANN-DLGGC-IPGSIGKMGK-TLNEIILM  167 (595)
Q Consensus        95 Ls~N~l~g~ip~~l~~-~~L~~L~L~~N-~l~~~-~p~~l-~~~~L~~L~L~~N-~l~~~-ip~~l~~l~~-~L~~L~Ls  167 (595)
                      |++|++++.+...+.. .+|++|+|++| .+++. +...+ ...+|++|+|++| ++++. +...+..+ . +|++|+|+
T Consensus       125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l-~~~L~~L~l~  203 (336)
T 2ast_B          125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV-SETITQLNLS  203 (336)
T ss_dssp             CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS-CTTCCEEECC
T ss_pred             CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc-ccCCCEEEeC
Confidence            5555554333333322 45555555555 33321 22211 1234555555555 44432 23333333 3 55555555


Q ss_pred             cc--ccC-CCCCCccCCCccceEEeccCcc-ccCCCCCCcCCCCCccEEEccCCc-CCCCCchhccCCCCCcEEEcccc
Q 007628          168 ND--NLT-GCLPPQIGMLKNLTVFDVSFNH-LQGSLPSSIGNMKSLEQLNVAHNR-FTGVIPSSVCQLPNLQNFTYSFN  241 (595)
Q Consensus       168 ~N--~l~-g~ip~~~~~L~~L~~LdLs~N~-L~g~lP~~l~~L~~L~~L~Ls~N~-Lsg~iP~~l~~l~~L~~L~Ls~N  241 (595)
                      +|  .++ +.+...+..+.+|++|+|++|. +++.....|.++.+|++|+|++|. ++...-..|.++.+|+.|+|++|
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            55  222 2233344445555555555555 444444455555555555555552 22111123445555555555555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=3.4e-22  Score=193.99  Aligned_cols=178  Identities=16%  Similarity=0.233  Sum_probs=133.1

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF   97 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~   97 (595)
                      .+.+++++++++.+ +..  ...+|++|+|++|+|+++....|+++.+|++|+|++|+|+++....|.++.+|++|||++
T Consensus         9 ~~~v~c~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A            9 GTTVECYSQGRTSV-PTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TTEEECCSSCCSSC-CSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCccCC-CCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            56888888888764 333  356899999999999988777889999999999999999977777788999999999999


Q ss_pred             CCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCC
Q 007628           98 NEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPP  177 (595)
Q Consensus        98 N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~  177 (595)
                      |+|++.....+                                              ..+ .+|++|+|++|+|.+....
T Consensus        86 n~l~~~~~~~~----------------------------------------------~~l-~~L~~L~L~~N~l~~~~~~  118 (208)
T 2o6s_A           86 NQLQSLPNGVF----------------------------------------------DKL-TQLKELALNTNQLQSLPDG  118 (208)
T ss_dssp             SCCCCCCTTTT----------------------------------------------TTC-TTCCEEECCSSCCCCCCTT
T ss_pred             CcCCccCHhHh----------------------------------------------cCc-cCCCEEEcCCCcCcccCHh
Confidence            98873222111                                              111 3344444444444444445


Q ss_pred             ccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCcccc
Q 007628          178 QIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTA  252 (595)
Q Consensus       178 ~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~  252 (595)
                      .|..+.+|++|+|++|+|++.....|..+.+|++|+|++|.+.+       .+.+|++|++++|+|+|.++...+
T Consensus       119 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          119 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence            56778888888888888886666668888888888888887764       345788888888888888876544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=5.4e-22  Score=208.57  Aligned_cols=222  Identities=18%  Similarity=0.199  Sum_probs=167.1

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCc-hhhcCCCCCCE-EeccCCcCCCcCchhcCCCCCCCEE
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRLKLLYE-VDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp-~~~~~L~~L~~-L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      ++++.|+|++|+|+.+-.++|.+|.+|++|+|++|+|.+.++ .+|.+|.+|++ +++++|+|+++.++.|.+|.+|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            579999999999998777789999999999999999876554 56889988875 6677899998888999999999999


Q ss_pred             EccCCCCCCCCCccccc-cCCCeeeccCC-ccccCCCcccCC--CCceeEEeeccCCCCCcCcccccccchhhHHHhhcc
Q 007628           94 DLRFNEFEGSVPSKLFD-KDLDAIFLNDN-RFQFGIPENLGN--SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMND  169 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~-~~L~~L~L~~N-~l~~~~p~~l~~--~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N  169 (595)
                      +|++|+|++........ .++..|++.++ ++.......+..  ..+++|+|++|+|+. +...++.+ .+|++|++.+|
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~-~~L~~l~l~~~  187 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNG-TQLDELNLSDN  187 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTT-EEEEEEECTTC
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccc-cchhHHhhccC
Confidence            99999998544333322 56777888664 444333333333  358899999999985 55555555 57899999864


Q ss_pred             ccCCCCC-CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccC
Q 007628          170 NLTGCLP-PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF  243 (595)
Q Consensus       170 ~l~g~ip-~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~L  243 (595)
                      +..+.++ +.|..|.+|++|||++|+|+ .++..  .+.+|+.|++.++.-...++ .+.++.+|+.+++.++..
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH  258 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred             CcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence            4444555 56899999999999999999 45442  34566666655544333565 488899999999987653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=3.2e-22  Score=198.45  Aligned_cols=181  Identities=15%  Similarity=0.156  Sum_probs=151.8

Q ss_pred             CCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCC-CCCCCCccccc--cCCCeeeccC-CccccCCCcccC-CCCcee
Q 007628           64 KLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNE-FEGSVPSKLFD--KDLDAIFLND-NRFQFGIPENLG-NSPVSV  138 (595)
Q Consensus        64 ~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~-l~g~ip~~l~~--~~L~~L~L~~-N~l~~~~p~~l~-~~~L~~  138 (595)
                      .+|++|+|++|+|+++....|.++.+|++|||++|+ |+ .+....+.  .+|++|+|++ |++++.....+. ..+|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence            489999999999998777799999999999999997 77 45543333  7999999998 999866655554 468999


Q ss_pred             EEeeccCCCCCcCcccccccchhh---HHHhhcc-ccCCCCCCccCCCccce-EEeccCccccCCCCCCcCCCCCccEEE
Q 007628          139 LVFANNDLGGCIPGSIGKMGKTLN---EIILMND-NLTGCLPPQIGMLKNLT-VFDVSFNHLQGSLPSSIGNMKSLEQLN  213 (595)
Q Consensus       139 L~L~~N~l~~~ip~~l~~l~~~L~---~L~Ls~N-~l~g~ip~~~~~L~~L~-~LdLs~N~L~g~lP~~l~~L~~L~~L~  213 (595)
                      |+|++|+|++ ++. |..+ .+|+   +|+|++| ++.+.....|.++.+|+ +|+|++|+|+ .++..+....+|++|+
T Consensus       110 L~l~~n~l~~-lp~-~~~l-~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~  185 (239)
T 2xwt_C          110 LGIFNTGLKM-FPD-LTKV-YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY  185 (239)
T ss_dssp             EEEEEECCCS-CCC-CTTC-CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEE
T ss_pred             EeCCCCCCcc-ccc-cccc-cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEE
Confidence            9999999987 555 6666 6777   9999999 99877777899999999 9999999999 5555544448999999


Q ss_pred             ccCCc-CCCCCchhccCC-CCCcEEEcccccCCCCCCc
Q 007628          214 VAHNR-FTGVIPSSVCQL-PNLQNFTYSFNYFTGEPPS  249 (595)
Q Consensus       214 Ls~N~-Lsg~iP~~l~~l-~~L~~L~Ls~N~Lsg~~p~  249 (595)
                      |++|+ |++.....|.++ .+|+.|||++|+|++....
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence            99995 987767889999 9999999999999976443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.87  E-value=3.6e-22  Score=223.18  Aligned_cols=188  Identities=22%  Similarity=0.378  Sum_probs=141.9

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      +|+.|+|++|+|++ ++..+  +.+|++|+|++|+|+. ++   ..+.+|++|+|++|+|++ ++. |.+  +|++|+|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            68888999888887 55545  3678899999998884 45   557888899999998886 555 554  88899999


Q ss_pred             CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628           97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP  176 (595)
Q Consensus        97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip  176 (595)
                      +|+|++ ++.  ...+|+.|+|++|++++ ++.  ...+|++|+|++|.|++ ++. |.   .+|++|+|++|+|+ .++
T Consensus       129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L~~-lp~-l~---~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          129 NNQLTM-LPE--LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQLTF-LPE-LP---ESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             SSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC-CC---TTCCEEECCSSCCS-SCC
T ss_pred             CCcCCC-CCC--cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCCCC-cch-hh---CCCCEEECcCCCCC-chh
Confidence            998886 655  45788888888888876 444  34678888888888876 555 44   67888888888887 555


Q ss_pred             CccCCCccc-------eEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCC
Q 007628          177 PQIGMLKNL-------TVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLP  231 (595)
Q Consensus       177 ~~~~~L~~L-------~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~  231 (595)
                      . |..  +|       ++|+|++|+|+ .++..+..|.+|++|+|++|.|++.++..|..+.
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            5 554  66       88888888888 5777777788888888888888887777766543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=2e-23  Score=216.90  Aligned_cols=233  Identities=13%  Similarity=0.066  Sum_probs=185.2

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCC-CchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGV-VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~-lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      ..++.|+|++|.|.+.... +.++.+|++|+|++|+|++. +...+.++.+|++|+|++|++++.+...|.++.+|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            6799999999999987655 66899999999999999876 788899999999999999999988888999999999999


Q ss_pred             ccCC-CCCCC-CCccccc-cCCCeeeccCC-ccccC-CCcccC-CC-CceeEEeecc--CCC-CCcCcccccccchhhHH
Q 007628           95 LRFN-EFEGS-VPSKLFD-KDLDAIFLNDN-RFQFG-IPENLG-NS-PVSVLVFANN--DLG-GCIPGSIGKMGKTLNEI  164 (595)
Q Consensus        95 Ls~N-~l~g~-ip~~l~~-~~L~~L~L~~N-~l~~~-~p~~l~-~~-~L~~L~L~~N--~l~-~~ip~~l~~l~~~L~~L  164 (595)
                      |++| .|++. +...+.. .+|++|+|++| ++++. +...+. .. +|++|+|++|  .++ +.+...+..+ .+|++|
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~-~~L~~L  227 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC-PNLVHL  227 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC-TTCSEE
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhC-CCCCEE
Confidence            9999 67743 3333332 78999999999 88753 333333 35 8999999999  555 4455566666 799999


Q ss_pred             Hhhccc-cCCCCCCccCCCccceEEeccCcc-ccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEccccc
Q 007628          165 ILMNDN-LTGCLPPQIGMLKNLTVFDVSFNH-LQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY  242 (595)
Q Consensus       165 ~Ls~N~-l~g~ip~~~~~L~~L~~LdLs~N~-L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~  242 (595)
                      +|++|. +++.....|.++.+|++|+|++|. +....-..|+++.+|++|+|++| ++...-..+.  .+|+.|+|++|+
T Consensus       228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~  304 (336)
T 2ast_B          228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSH  304 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCC
T ss_pred             eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEeccc
Confidence            999999 776777789999999999999995 43333346888999999999999 6543323332  246777799999


Q ss_pred             CCCCCCccccc
Q 007628          243 FTGEPPSCTAA  253 (595)
Q Consensus       243 Lsg~~p~~~~~  253 (595)
                      |++..+...+.
T Consensus       305 l~~~~~~~~~~  315 (336)
T 2ast_B          305 FTTIARPTIGN  315 (336)
T ss_dssp             SCCTTCSSCSS
T ss_pred             CccccCCcccc
Confidence            99987765443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=6.3e-21  Score=215.38  Aligned_cols=209  Identities=22%  Similarity=0.273  Sum_probs=117.2

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      .+|+.|+|++|+|+.+ +.   .+.+|++|+|++|+|++ ++.   .+.+|++|+|++|+|+++ +.   .+.+|++|+|
T Consensus        61 ~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEEC
Confidence            4567777777776643 22   45667777777777664 332   556666666666666532 22   2344444444


Q ss_pred             cCCCCCCCCCccccccCCCeeeccCCccccCCCcc------------------cCCCCceeEEeeccCCCCCcCcccc--
Q 007628           96 RFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPEN------------------LGNSPVSVLVFANNDLGGCIPGSIG--  155 (595)
Q Consensus        96 s~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~------------------l~~~~L~~L~L~~N~l~~~ip~~l~--  155 (595)
                      ++|+|++ ++..+  .+|++|+|++|++++. +..                  ....+|++|+|++|.|++ ++..+.  
T Consensus       129 ~~N~l~~-lp~~l--~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L  203 (622)
T 3g06_A          129 FGNQLTS-LPVLP--PGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSEL  203 (622)
T ss_dssp             CSSCCSC-CCCCC--TTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTC
T ss_pred             CCCCCCc-CCCCC--CCCCEEECcCCcCCCc-CCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchh
Confidence            4444442 22221  3444444444444321 110                  011345555555555553 111111  


Q ss_pred             --------------cccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCC
Q 007628          156 --------------KMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTG  221 (595)
Q Consensus       156 --------------~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg  221 (595)
                                    ....+|++|+|++|+|++ ++   ..+.+|++|+|++|+|+ .++.   .+.+|++|+|++|+|+ 
T Consensus       204 ~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-  274 (622)
T 3g06_A          204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-  274 (622)
T ss_dssp             CEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-
T ss_pred             hEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-
Confidence                          111346666666666664 33   34566777777777776 4444   4567888888888887 


Q ss_pred             CCchhccCCCCCcEEEcccccCCCCCCcc
Q 007628          222 VIPSSVCQLPNLQNFTYSFNYFTGEPPSC  250 (595)
Q Consensus       222 ~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~  250 (595)
                      .++..|.++.+|+.|+|++|.|++.+...
T Consensus       275 ~lp~~l~~l~~L~~L~L~~N~l~~~~~~~  303 (622)
T 3g06_A          275 RLPESLIHLSSETTVNLEGNPLSERTLQA  303 (622)
T ss_dssp             SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred             cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence            66777888888888888888887765543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.86  E-value=3.4e-22  Score=205.04  Aligned_cols=193  Identities=17%  Similarity=0.234  Sum_probs=125.5

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      +.++..++|.++.+++++  .+.++.+|+.|+|++|+|.++  ..|..|.+|++|+|++|+|++...  |.++.+|++|+
T Consensus        23 l~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~   96 (291)
T 1h6t_A           23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLF   96 (291)
T ss_dssp             HHHHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEE
Confidence            344455566666666542  345678888888888888754  357888888888888888886544  88888888888


Q ss_pred             ccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCC
Q 007628           95 LRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC  174 (595)
Q Consensus        95 Ls~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~  174 (595)
                      |++|+|++ +.......+|++|+|++|++++                       .  ..+..+ .+|++|+|++|++.+.
T Consensus        97 l~~n~l~~-~~~l~~l~~L~~L~L~~n~i~~-----------------------~--~~l~~l-~~L~~L~l~~n~l~~~  149 (291)
T 1h6t_A           97 LDENKVKD-LSSLKDLKKLKSLSLEHNGISD-----------------------I--NGLVHL-PQLESLYLGNNKITDI  149 (291)
T ss_dssp             CCSSCCCC-GGGGTTCTTCCEEECTTSCCCC-----------------------C--GGGGGC-TTCCEEECCSSCCCCC
T ss_pred             CCCCcCCC-ChhhccCCCCCEEECCCCcCCC-----------------------C--hhhcCC-CCCCEEEccCCcCCcc
Confidence            88888874 3322222455555555555442                       1  233333 4555555555555543


Q ss_pred             CCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       175 ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                        ..|+.+.+|++|+|++|.|++...  +..+.+|++|+|++|+|++.  ..+..+.+|+.|+|++|.++..
T Consensus       150 --~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          150 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECC
T ss_pred             --hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCC
Confidence              456667777777777777765433  66777777777777777643  3466777777777777776653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.9e-23  Score=222.11  Aligned_cols=226  Identities=15%  Similarity=0.215  Sum_probs=175.8

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCC----chhhcCCCCCCEEeccCCc---CCCcCchhc------
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVV----PSTFRRLKLLYEVDLSNNR---FVGKFPKLF------   84 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~l----p~~~~~L~~L~~L~Ls~N~---Lsg~lp~~l------   84 (595)
                      |+..+|+..++.. +...+..+.+|+.|+|++|+|.+..    ...|.++.+|++|+|++|.   |.+.++..+      
T Consensus        11 L~~~~l~~~~~~~-l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~   89 (386)
T 2ca6_A           11 LKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA   89 (386)
T ss_dssp             CEESSCCSHHHHT-TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred             cccCCCCHHHHHH-HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence            4444444444443 5567888999999999999998763    3447799999999999964   444555444      


Q ss_pred             -CCCCCCCEEEccCCCCCCC----CCccccc-cCCCeeeccCCccccCCCcccCC--------------CCceeEEeecc
Q 007628           85 -LSLPKLKYLDLRFNEFEGS----VPSKLFD-KDLDAIFLNDNRFQFGIPENLGN--------------SPVSVLVFANN  144 (595)
Q Consensus        85 -~~L~~L~~LdLs~N~l~g~----ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~--------------~~L~~L~L~~N  144 (595)
                       .++.+|++|||++|+|++.    +...+.. .+|++|+|++|++.......+..              .+|++|+|++|
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence             7899999999999999863    3334333 78999999999987443333322              68999999999


Q ss_pred             CCCC-CcC---cccccccchhhHHHhhccccC--C---CCCCccCCCccceEEeccCcccc----CCCCCCcCCCCCccE
Q 007628          145 DLGG-CIP---GSIGKMGKTLNEIILMNDNLT--G---CLPPQIGMLKNLTVFDVSFNHLQ----GSLPSSIGNMKSLEQ  211 (595)
Q Consensus       145 ~l~~-~ip---~~l~~l~~~L~~L~Ls~N~l~--g---~ip~~~~~L~~L~~LdLs~N~L~----g~lP~~l~~L~~L~~  211 (595)
                      +|+. .+.   ..|..+ .+|++|+|++|+|.  |   .+...|..+.+|++|+|++|.|+    +.+...|..+.+|++
T Consensus       170 ~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          170 RLENGSMKEWAKTFQSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             CCTGGGHHHHHHHHHHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             CCCcHHHHHHHHHHHhC-CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            9983 333   345555 68999999999987  2   33447889999999999999996    567788899999999


Q ss_pred             EEccCCcCCCC----Cchhc--cCCCCCcEEEcccccCCC
Q 007628          212 LNVAHNRFTGV----IPSSV--CQLPNLQNFTYSFNYFTG  245 (595)
Q Consensus       212 L~Ls~N~Lsg~----iP~~l--~~l~~L~~L~Ls~N~Lsg  245 (595)
                      |+|++|+|++.    +...+  +.+.+|+.|+|++|.|++
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            99999999875    55666  448999999999999998

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=1.4e-20  Score=182.65  Aligned_cols=175  Identities=15%  Similarity=0.163  Sum_probs=134.4

Q ss_pred             ceecccCCCC---CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCC
Q 007628            2 GVFCARSPFN---SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVG   78 (595)
Q Consensus         2 gv~C~~~~~~---~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg   78 (595)
                      ||.|......   ..-..+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++....|.++.+|++|+|++|+|++
T Consensus        11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~   90 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS   90 (208)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence            6777654321   1224579999999999999888889999999999999999998888889999999999999999998


Q ss_pred             cCchhcCCCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCccccc
Q 007628           79 KFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGK  156 (595)
Q Consensus        79 ~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~  156 (595)
                      +....|.++.+|++|||++|+|++.....+.. .+|++|+|++|++++.....+. ..+|++|+|++|.+.+.       
T Consensus        91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------  163 (208)
T 2o6s_A           91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------  163 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------
T ss_pred             cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------
Confidence            77778899999999999999999554443332 6788888888888765554443 35677777777766532       


Q ss_pred             ccchhhHHHhhccccCCCCCCccCCCcc
Q 007628          157 MGKTLNEIILMNDNLTGCLPPQIGMLKN  184 (595)
Q Consensus       157 l~~~L~~L~Ls~N~l~g~ip~~~~~L~~  184 (595)
                      + ..|+.|++..|+++|.++++++.+..
T Consensus       164 ~-~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          164 C-PGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             T-TTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             C-CCHHHHHHHHHhCCceeeccCccccC
Confidence            2 45667777777777777666665543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.85  E-value=6.1e-22  Score=223.18  Aligned_cols=195  Identities=17%  Similarity=0.240  Sum_probs=124.2

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY   92 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~   92 (595)
                      ..+.++..++|.++.+.+++  .+.+|.+|+.|+|++|+|..+  ..|.+|.+|+.|+|++|+|+++..  |.+|.+|++
T Consensus        18 ~~l~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~   91 (605)
T 1m9s_A           18 DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW   91 (605)
T ss_dssp             HHHHHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCE
T ss_pred             HHHHHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCE
Confidence            34556667777777777653  356788889999999998854  368889999999999999886554  888899999


Q ss_pred             EEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           93 LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        93 LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      |+|++|+|.+ +.......+|+.|+|++|++.+ +.                        .|..+ .+|+.|+|++|+|.
T Consensus        92 L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~-l~------------------------~l~~l-~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A           92 LFLDENKIKD-LSSLKDLKKLKSLSLEHNGISD-IN------------------------GLVHL-PQLESLYLGNNKIT  144 (605)
T ss_dssp             EECCSSCCCC-CTTSTTCTTCCEEECTTSCCCC-CG------------------------GGGGC-TTCSEEECCSSCCC
T ss_pred             EECcCCCCCC-ChhhccCCCCCEEEecCCCCCC-Cc------------------------cccCC-CccCEEECCCCccC
Confidence            9999998874 3322222556666666665553 22                        23333 44555555555544


Q ss_pred             CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      +.  ..|+.|.+|++|+|++|.|++..+  |..|.+|++|+|++|+|++.  ..|..|.+|+.|+|++|.|++.
T Consensus       145 ~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          145 DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             Cc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            33  445555566666666666654433  55566666666666666543  3455566666666666665554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=1.8e-21  Score=217.52  Aligned_cols=186  Identities=22%  Similarity=0.339  Sum_probs=156.6

Q ss_pred             CCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccC
Q 007628           41 DLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLND  120 (595)
Q Consensus        41 ~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~  120 (595)
                      +|+.|+|++|+|++ ++..+  +.+|++|+|++|+|+ .++   ..+.+|++|||++|+|++ ++. +. .+|++|+|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~  129 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDN  129 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCC
Confidence            89999999999997 66655  488999999999999 555   457899999999999996 777 43 4999999999


Q ss_pred             CccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCC
Q 007628          121 NRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLP  200 (595)
Q Consensus       121 N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP  200 (595)
                      |++++ ++.  ...+|++|+|++|.|++ ++.    ...+|++|+|++|+|++ ++. |.  .+|++|+|++|+|+ .++
T Consensus       130 N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          130 NQLTM-LPE--LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             SCCSC-CCC--CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred             CcCCC-CCC--cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chh
Confidence            99987 555  56789999999999997 554    23789999999999997 666 66  89999999999999 677


Q ss_pred             CCcCCCCCc-------cEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCCccccc
Q 007628          201 SSIGNMKSL-------EQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSCTAA  253 (595)
Q Consensus       201 ~~l~~L~~L-------~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p~~~~~  253 (595)
                      . |..  +|       ++|+|++|+|+ .++..+.++.+|+.|+|++|.|++.++...+.
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            7 655  77       99999999999 57888888999999999999999977655443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.85  E-value=1.5e-20  Score=212.32  Aligned_cols=201  Identities=22%  Similarity=0.308  Sum_probs=137.5

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      +++.|+|++|+|+. ++..+.  .+|+.|+|++|+|++ ++.   .+.+|++|+|++|+|++ ++.   .+.+|++|+|+
T Consensus        41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence            48999999999995 566555  799999999999995 444   68999999999999984 454   68999999999


Q ss_pred             CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccc----------------cch
Q 007628           97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKM----------------GKT  160 (595)
Q Consensus        97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l----------------~~~  160 (595)
                      +|+|++ ++.  ...+|+.|+|++|++++ ++..+  .+|++|+|++|+|++. +..+.++                ..+
T Consensus       110 ~N~l~~-l~~--~l~~L~~L~L~~N~l~~-lp~~l--~~L~~L~Ls~N~l~~l-~~~~~~L~~L~L~~N~l~~l~~~~~~  182 (622)
T 3g06_A          110 SNPLTH-LPA--LPSGLCKLWIFGNQLTS-LPVLP--PGLQELSVSDNQLASL-PALPSELCKLWAYNNQLTSLPMLPSG  182 (622)
T ss_dssp             SCCCCC-CCC--CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSCCCCCCTT
T ss_pred             CCcCCC-CCC--CCCCcCEEECCCCCCCc-CCCCC--CCCCEEECcCCcCCCc-CCccCCCCEEECCCCCCCCCcccCCC
Confidence            999985 444  44789999999999885 44433  6789999999988752 2222111                144


Q ss_pred             hhHHHhhccccCCCCCCccCC-----------------CccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628          161 LNEIILMNDNLTGCLPPQIGM-----------------LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI  223 (595)
Q Consensus       161 L~~L~Ls~N~l~g~ip~~~~~-----------------L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i  223 (595)
                      |++|+|++|+|++ ++..+.+                 +.+|++|+|++|+|++ ++   ..+.+|++|+|++|+|++ +
T Consensus       183 L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-l  256 (622)
T 3g06_A          183 LQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-L  256 (622)
T ss_dssp             CCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-C
T ss_pred             CcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-C
Confidence            6666666666654 2221111                 1345555555555553 33   334556666666666652 3


Q ss_pred             chhccCCCCCcEEEcccccCC
Q 007628          224 PSSVCQLPNLQNFTYSFNYFT  244 (595)
Q Consensus       224 P~~l~~l~~L~~L~Ls~N~Ls  244 (595)
                      +.   .+.+|+.|+|++|+|+
T Consensus       257 p~---~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          257 PM---LPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             CC---CCTTCCEEECCSSCCC
T ss_pred             Cc---ccccCcEEeCCCCCCC
Confidence            33   4456666777777666

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=2.4e-21  Score=203.60  Aligned_cols=217  Identities=12%  Similarity=0.125  Sum_probs=165.4

Q ss_pred             eEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCc-hhcCCCCCCCE-EEcc
Q 007628           19 ASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFP-KLFLSLPKLKY-LDLR   96 (595)
Q Consensus        19 ~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp-~~l~~L~~L~~-LdLs   96 (595)
                      ++++.++++|+. ++..|  ..+|++|+|++|+|+.+..++|++|.+|++|+|++|+|.+.++ ++|.+|.+|++ ++++
T Consensus        12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            467889999986 56655  4689999999999997777789999999999999999876665 57889988775 6777


Q ss_pred             CCCCCCCCCccccc-cCCCeeeccCCccccCCCccc-CCCCceeEEeec-cCCCCCcCcccccccchhhHHHhhccccCC
Q 007628           97 FNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENL-GNSPVSVLVFAN-NDLGGCIPGSIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        97 ~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l-~~~~L~~L~L~~-N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      +|+|++..+..+.. .+|++|+|++|++.+.....+ ...++.+|++.+ |++.......|..+...+++|+|++|+|+.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            89998544444433 799999999999986554433 346778888876 566655556676665678999999999984


Q ss_pred             CCCCccCCCccceEEeccC-ccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEccccc
Q 007628          174 CLPPQIGMLKNLTVFDVSF-NHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY  242 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~-N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~  242 (595)
                       +...+..+.+|++|+|++ |.++..-.++|..+.+|++|||++|+|+..-...|   .+|+.|.+.++.
T Consensus       169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~  234 (350)
T 4ay9_X          169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTY  234 (350)
T ss_dssp             -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCT
T ss_pred             -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCC
Confidence             455555667899999986 56664434578999999999999999995544444   456666655543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=5.6e-24  Score=230.45  Aligned_cols=233  Identities=13%  Similarity=0.098  Sum_probs=119.7

Q ss_pred             CCCCCceeEEEccCCCCCCCCchhhc-----CCCCCcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCCCcCch
Q 007628           12 SPSLRVVASIDLNHADIAGYLPPEIG-----RLTDLAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFVGKFPK   82 (595)
Q Consensus        12 ~~~l~~L~~LdLs~n~i~~~lp~~~~-----~L~~L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~lp~   82 (595)
                      +.++.+|+.|+|++|.|++.....|.     .+.+|++|+|++|+|++.    +...|.++.+|++|+|++|+|++....
T Consensus       109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  188 (461)
T 1z7x_W          109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR  188 (461)
T ss_dssp             TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence            34566777777777776543222222     244577777777776653    244455566677777766666533222


Q ss_pred             hcC-----CCCCCCEEEccCCCCCCC----CCccccc-cCCCeeeccCCccccCCC----ccc--CCCCceeEEeeccCC
Q 007628           83 LFL-----SLPKLKYLDLRFNEFEGS----VPSKLFD-KDLDAIFLNDNRFQFGIP----ENL--GNSPVSVLVFANNDL  146 (595)
Q Consensus        83 ~l~-----~L~~L~~LdLs~N~l~g~----ip~~l~~-~~L~~L~L~~N~l~~~~p----~~l--~~~~L~~L~L~~N~l  146 (595)
                      .|.     .+.+|++|+|++|+|++.    +...+.. .+|++|+|++|++.+...    ..+  ...+|++|+|++|+|
T Consensus       189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l  268 (461)
T 1z7x_W          189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI  268 (461)
T ss_dssp             HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            221     244566666666666532    1222211 456666666665543211    111  124455555555555


Q ss_pred             CCC----cCcccccccc-----------------------------hhhHHHhhccccCCC----CCCccCCCccceEEe
Q 007628          147 GGC----IPGSIGKMGK-----------------------------TLNEIILMNDNLTGC----LPPQIGMLKNLTVFD  189 (595)
Q Consensus       147 ~~~----ip~~l~~l~~-----------------------------~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~Ld  189 (595)
                      ++.    +...+..+ .                             +|++|+|++|.+++.    +...|..+.+|++||
T Consensus       269 ~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  347 (461)
T 1z7x_W          269 TAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ  347 (461)
T ss_dssp             CHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred             CHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence            432    22223223 3                             444455555544432    223344456666666


Q ss_pred             ccCccccCCCCCCcCC-----CCCccEEEccCCcCCC----CCchhccCCCCCcEEEcccccCCC
Q 007628          190 VSFNHLQGSLPSSIGN-----MKSLEQLNVAHNRFTG----VIPSSVCQLPNLQNFTYSFNYFTG  245 (595)
Q Consensus       190 Ls~N~L~g~lP~~l~~-----L~~L~~L~Ls~N~Lsg----~iP~~l~~l~~L~~L~Ls~N~Lsg  245 (595)
                      |++|.|++.....+.+     +.+|++|+|++|+|++    .+...+..+.+|++|||++|+|++
T Consensus       348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            6666665433222221     4566666666666664    455556666666666666666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.84  E-value=6.8e-21  Score=187.33  Aligned_cols=80  Identities=24%  Similarity=0.346  Sum_probs=69.4

Q ss_pred             eEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCC
Q 007628           19 ASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN   98 (595)
Q Consensus        19 ~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N   98 (595)
                      +.+++++++++. ++..+.  .+|++|+|++|+|+++....|.++.+|++|+|++|+|+++.++.|.+|.+|++|||++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            578999999886 454443  68999999999999888888999999999999999999888889999999999999999


Q ss_pred             CCC
Q 007628           99 EFE  101 (595)
Q Consensus        99 ~l~  101 (595)
                      +|+
T Consensus        91 ~l~   93 (220)
T 2v9t_B           91 KIT   93 (220)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            887

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=5e-21  Score=188.26  Aligned_cols=81  Identities=21%  Similarity=0.317  Sum_probs=66.3

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCc-hhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp-~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      .+.|++++|+|+. ++..+.  ..+++|+|++|+|+++.. ..|.++.+|++|+|++|+|+++....|.++.+|++|||+
T Consensus        13 ~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           13 GTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            3589999999887 455543  356899999999997754 458899999999999999998777788899999999999


Q ss_pred             CCCCC
Q 007628           97 FNEFE  101 (595)
Q Consensus        97 ~N~l~  101 (595)
                      +|+|+
T Consensus        90 ~N~l~   94 (220)
T 2v70_A           90 SNRLE   94 (220)
T ss_dssp             SSCCC
T ss_pred             CCccC
Confidence            88887

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.84  E-value=1.9e-23  Score=226.27  Aligned_cols=231  Identities=17%  Similarity=0.150  Sum_probs=141.2

Q ss_pred             CCCceeEEEccCCCCCCC----CchhhcCCCCCcEEEccCCcCCCCCchhh-cCCC----CCCEEeccCCcCCC----cC
Q 007628           14 SLRVVASIDLNHADIAGY----LPPEIGRLTDLAIFHINSNRFCGVVPSTF-RRLK----LLYEVDLSNNRFVG----KF   80 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~----lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~-~~L~----~L~~L~Ls~N~Lsg----~l   80 (595)
                      .+.+|+.|+|++|+|++.    +...|.++.+|++|+|++|+|.+.....| ..+.    +|++|+|++|+|+.    .+
T Consensus        26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            456778888888887742    34556777888888888888765433333 3344    68888888888773    45


Q ss_pred             chhcCCCCCCCEEEccCCCCCCCCCccccc------cCCCeeeccCCccccCCCccc-----CCCCceeEEeeccCCCCC
Q 007628           81 PKLFLSLPKLKYLDLRFNEFEGSVPSKLFD------KDLDAIFLNDNRFQFGIPENL-----GNSPVSVLVFANNDLGGC  149 (595)
Q Consensus        81 p~~l~~L~~L~~LdLs~N~l~g~ip~~l~~------~~L~~L~L~~N~l~~~~p~~l-----~~~~L~~L~L~~N~l~~~  149 (595)
                      ...|.++.+|++|||++|.|++.....+..      .+|++|+|++|++++.....+     ...+|++|+|++|.+++.
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  185 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  185 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence            677778888888888888876432222221      257788888777765332111     125677777777776654


Q ss_pred             cCcccccc----cchhhHHHhhccccCCC----CCCccCCCccceEEeccCccccCCC-----CCCcCCCCCccEEEccC
Q 007628          150 IPGSIGKM----GKTLNEIILMNDNLTGC----LPPQIGMLKNLTVFDVSFNHLQGSL-----PSSIGNMKSLEQLNVAH  216 (595)
Q Consensus       150 ip~~l~~l----~~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~L~g~l-----P~~l~~L~~L~~L~Ls~  216 (595)
                      ....+.+.    ..+|++|+|++|++++.    +...|..+.+|++|+|++|.|++..     ...+..+.+|++|+|++
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~  265 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE  265 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence            33333321    13667777777766643    3445555666777777777665321     11122456666666666


Q ss_pred             CcCCCC----CchhccCCCCCcEEEcccccCC
Q 007628          217 NRFTGV----IPSSVCQLPNLQNFTYSFNYFT  244 (595)
Q Consensus       217 N~Lsg~----iP~~l~~l~~L~~L~Ls~N~Ls  244 (595)
                      |+|++.    +...+.++.+|++|+|++|.|+
T Consensus       266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          266 CGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             CCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence            666643    4445555666666666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.83  E-value=4e-21  Score=202.88  Aligned_cols=178  Identities=17%  Similarity=0.238  Sum_probs=121.5

Q ss_pred             eEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhc-CCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628           19 ASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFR-RLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF   97 (595)
Q Consensus        19 ~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~-~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~   97 (595)
                      +++++++++|+. ++..+.  ..|+.|+|++|+|+++....|. +|.+|++|+|++|+|+++..+.|.+|.+|++|||++
T Consensus        21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            578999999887 455443  4588999999999988888887 899999999999999987778899999999999999


Q ss_pred             CCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCC
Q 007628           98 NEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPP  177 (595)
Q Consensus        98 N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~  177 (595)
                      |+|++.....+                                              ..+ .+|++|+|++|+|.+..+.
T Consensus        98 N~l~~~~~~~~----------------------------------------------~~l-~~L~~L~L~~N~i~~~~~~  130 (361)
T 2xot_A           98 NHLHTLDEFLF----------------------------------------------SDL-QALEVLLLYNNHIVVVDRN  130 (361)
T ss_dssp             SCCCEECTTTT----------------------------------------------TTC-TTCCEEECCSSCCCEECTT
T ss_pred             CcCCcCCHHHh----------------------------------------------CCC-cCCCEEECCCCcccEECHH
Confidence            99873221111                                              111 2333344444444434445


Q ss_pred             ccCCCccceEEeccCccccCCCCCCc---CCCCCccEEEccCCcCCCCCchhccCCCC--CcEEEcccccCCCC
Q 007628          178 QIGMLKNLTVFDVSFNHLQGSLPSSI---GNMKSLEQLNVAHNRFTGVIPSSVCQLPN--LQNFTYSFNYFTGE  246 (595)
Q Consensus       178 ~~~~L~~L~~LdLs~N~L~g~lP~~l---~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~--L~~L~Ls~N~Lsg~  246 (595)
                      .|..|.+|++|+|++|+|++.....|   ..+.+|++|+|++|+|++.....|..+.+  |+.|+|++|.|.++
T Consensus       131 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            56666777777777777764333333   45677777777777777555556666655  36677777777653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.82  E-value=1.5e-20  Score=192.78  Aligned_cols=171  Identities=22%  Similarity=0.358  Sum_probs=130.1

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .+.+|+.|+|++|+|.++  ..|.++.+|++|+|++|+|+++..  |.++.+|++|+|++|+|++. . .|.++.+|++|
T Consensus        44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L  117 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSL  117 (291)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEE
T ss_pred             hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEE
Confidence            467799999999999876  468999999999999999997654  99999999999999999863 3 48999999999


Q ss_pred             EccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628           94 DLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      ||++|+|++ +.......+|++|+|++|++++                       .  ..+..+ .+|++|+|++|++.+
T Consensus       118 ~L~~n~i~~-~~~l~~l~~L~~L~l~~n~l~~-----------------------~--~~l~~l-~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          118 SLEHNGISD-INGLVHLPQLESLYLGNNKITD-----------------------I--TVLSRL-TKLDTLSLEDNQISD  170 (291)
T ss_dssp             ECTTSCCCC-CGGGGGCTTCCEEECCSSCCCC-----------------------C--GGGGGC-TTCSEEECCSSCCCC
T ss_pred             ECCCCcCCC-ChhhcCCCCCCEEEccCCcCCc-----------------------c--hhhccC-CCCCEEEccCCcccc
Confidence            999999985 3322222566666666666553                       2  334444 566666666666665


Q ss_pred             CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCC
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTG  221 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg  221 (595)
                      ...  |..+.+|++|+|++|.|++ + ..+..+.+|+.|+|++|+|++
T Consensus       171 ~~~--l~~l~~L~~L~L~~N~i~~-l-~~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          171 IVP--LAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEEEEEEEEEC
T ss_pred             chh--hcCCCccCEEECCCCcCCC-C-hhhccCCCCCEEECcCCcccC
Confidence            433  6777788888888888874 3 347778888888888888765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=1.4e-19  Score=178.90  Aligned_cols=156  Identities=23%  Similarity=0.267  Sum_probs=101.5

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      .++.+++++++++. ++..+  ..+|++|+|++|+|+++.+..|.++.+|++|+|++|+|+++....|.++.+|++|||+
T Consensus        20 s~~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            35567777777665 33333  2667777777777777767777777777777777777765555666777777777777


Q ss_pred             CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628           97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP  176 (595)
Q Consensus        97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip  176 (595)
                      +|+|++                                                                       ...
T Consensus        97 ~N~l~~-----------------------------------------------------------------------l~~  105 (229)
T 3e6j_A           97 TNQLTV-----------------------------------------------------------------------LPS  105 (229)
T ss_dssp             SSCCCC-----------------------------------------------------------------------CCT
T ss_pred             CCcCCc-----------------------------------------------------------------------cCh
Confidence            776652                                                                       112


Q ss_pred             CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628          177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP  247 (595)
Q Consensus       177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~  247 (595)
                      ..|..+.+|++|+|++|+|+ .++..+..+.+|++|+|++|+|++.....|..+.+|+.|+|++|.|++..
T Consensus       106 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            23344556666666666666 55666666666677777776666555556666666777777777666553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.82  E-value=3.2e-20  Score=209.15  Aligned_cols=173  Identities=20%  Similarity=0.307  Sum_probs=143.7

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY   92 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~   92 (595)
                      ..|..|+.|+|++|+|..+  ..|..|.+|+.|+|++|+|.++..  |.+|.+|+.|+|++|+|++. . .|.+|.+|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~  113 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL-S-SLKDLKKLKS  113 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-T-TSTTCTTCCE
T ss_pred             hcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC-h-hhccCCCCCE
Confidence            3577899999999999875  369999999999999999997654  99999999999999999964 3 7899999999


Q ss_pred             EEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           93 LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        93 LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      |+|++|+|.+ +.......+|+.|+|++|++++. .....+.+|++|+|++|+|++..+  |..+ .+|++|+|++|+|.
T Consensus       114 L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          114 LSLEHNGISD-INGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGL-TKLQNLYLSKNHIS  188 (605)
T ss_dssp             EECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTC-TTCCEEECCSSCCC
T ss_pred             EEecCCCCCC-CccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccC-CCCCEEECcCCCCC
Confidence            9999999995 44433448899999999999865 444455788999999999887665  6666 78888888888888


Q ss_pred             CCCCCccCCCccceEEeccCccccCC
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGS  198 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~  198 (595)
                      +.  ..|..|.+|+.|+|++|.|.+.
T Consensus       189 ~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          189 DL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             BC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             CC--hHHccCCCCCEEEccCCcCcCC
Confidence            64  4688888889999988888754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.81  E-value=2.5e-21  Score=195.73  Aligned_cols=172  Identities=19%  Similarity=0.309  Sum_probs=122.0

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY   92 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~   92 (595)
                      ..+.+++.++|++++|+++.  .+.++.+|++|+|++|+|+.+ . .|.++.+|++|+|++|+|++...  |.+|.+|++
T Consensus        16 ~~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           16 PGLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            46677888999999998754  688899999999999999854 3 78999999999999999996544  899999999


Q ss_pred             EEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           93 LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        93 LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      |+|++|+|++ ++.... .+|++|+|++|++++. .                        .+..+ .+|++|+|++|+|+
T Consensus        90 L~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~~-~------------------------~l~~l-~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           90 LSVNRNRLKN-LNGIPS-ACLSRLFLDNNELRDT-D------------------------SLIHL-KNLEILSIRNNKLK  141 (263)
T ss_dssp             EECCSSCCSC-CTTCCC-SSCCEEECCSSCCSBS-G------------------------GGTTC-TTCCEEECTTSCCC
T ss_pred             EECCCCccCC-cCcccc-CcccEEEccCCccCCC-h------------------------hhcCc-ccccEEECCCCcCC
Confidence            9999999984 433333 5666666666665532 1                        23333 44555555555554


Q ss_pred             CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCC
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV  222 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~  222 (595)
                      +.  ..|+.|.+|++|+|++|.|++.  ..|..+.+|++|+|++|.+++.
T Consensus       142 ~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          142 SI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             BC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            33  2455666666666666666644  5566666666666666666543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=1.1e-18  Score=172.43  Aligned_cols=150  Identities=21%  Similarity=0.223  Sum_probs=119.5

Q ss_pred             ceecccCCCC---CCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCC
Q 007628            2 GVFCARSPFN---SPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVG   78 (595)
Q Consensus         2 gv~C~~~~~~---~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg   78 (595)
                      +|.|......   ..-..+|+.|+|++|+|+++.+..|.++.+|++|+|++|+|.++....|.+|.+|++|+|++|+|++
T Consensus        23 ~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~  102 (229)
T 3e6j_A           23 TVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV  102 (229)
T ss_dssp             EEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc
Confidence            5677654322   1123679999999999999999999999999999999999998777889999999999999999998


Q ss_pred             cCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCccccccc
Q 007628           79 KFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMG  158 (595)
Q Consensus        79 ~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~  158 (595)
                      +....|..+.+|++|+|++|+|+ .+                                                      
T Consensus       103 l~~~~~~~l~~L~~L~Ls~N~l~-~l------------------------------------------------------  127 (229)
T 3e6j_A          103 LPSAVFDRLVHLKELFMCCNKLT-EL------------------------------------------------------  127 (229)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCC-SC------------------------------------------------------
T ss_pred             cChhHhCcchhhCeEeccCCccc-cc------------------------------------------------------
Confidence            87888899999999999999886 22                                                      


Q ss_pred             chhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628          159 KTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI  223 (595)
Q Consensus       159 ~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i  223 (595)
                                       +..|..+.+|++|+|++|+|++.....|..+.+|++|+|++|.|.+..
T Consensus       128 -----------------p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          128 -----------------PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             -----------------CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             -----------------CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence                             123344566777777777777655566777777888888888777553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.79  E-value=1.5e-22  Score=226.63  Aligned_cols=191  Identities=22%  Similarity=0.261  Sum_probs=152.3

Q ss_pred             cCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCc-------------CCCcCchhcCCCCCCCEEE-ccCCCCCC
Q 007628           37 GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR-------------FVGKFPKLFLSLPKLKYLD-LRFNEFEG  102 (595)
Q Consensus        37 ~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~-------------Lsg~lp~~l~~L~~L~~Ld-Ls~N~l~g  102 (595)
                      ..+.+|+.|+|++|+|+ .++.+|++|.+|+.|+|++|.             +.+.++..|.+|.+|+.|| +++|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56777888888888886 678888888888888887665             4556666777777777777 6665442 


Q ss_pred             CCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCC
Q 007628          103 SVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGML  182 (595)
Q Consensus       103 ~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L  182 (595)
                               +|+.++|.+|.+...     ....|++|+|++|+|++ ++. |+.+ .+|++|+|++|+|+ .++..|+.|
T Consensus       424 ---------~L~~l~l~~n~i~~l-----~~~~L~~L~Ls~n~l~~-lp~-~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l  485 (567)
T 1dce_A          424 ---------DLRSKFLLENSVLKM-----EYADVRVLHLAHKDLTV-LCH-LEQL-LLVTHLDLSHNRLR-ALPPALAAL  485 (567)
T ss_dssp             ---------HHHHHHHHHHHHHHH-----HHTTCSEEECTTSCCSS-CCC-GGGG-TTCCEEECCSSCCC-CCCGGGGGC
T ss_pred             ---------hhhhhhhhccccccc-----CccCceEEEecCCCCCC-CcC-cccc-ccCcEeecCccccc-ccchhhhcC
Confidence                     455556666665432     11347889999999986 555 8877 78999999999998 788899999


Q ss_pred             ccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC-chhccCCCCCcEEEcccccCCCCCCc
Q 007628          183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI-PSSVCQLPNLQNFTYSFNYFTGEPPS  249 (595)
Q Consensus       183 ~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i-P~~l~~l~~L~~L~Ls~N~Lsg~~p~  249 (595)
                      .+|++|+|++|+|++ ++ .|+.|.+|++|+|++|+|++.+ +..|++|.+|+.|+|++|.|++.+..
T Consensus       486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            999999999999996 66 8999999999999999999886 89999999999999999999987653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=1.7e-19  Score=182.31  Aligned_cols=173  Identities=20%  Similarity=0.259  Sum_probs=136.2

Q ss_pred             CCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeee
Q 007628           38 RLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIF  117 (595)
Q Consensus        38 ~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~  117 (595)
                      ++.+|+.|+|++|.|+++.  .+.+|.+|++|+|++|+|+. +. .|..+.+|++|+|++|+|++... .....+|++|+
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence            4667788899999998654  68899999999999999984 44 68889999999999999985433 22225666666


Q ss_pred             ccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccC
Q 007628          118 LNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG  197 (595)
Q Consensus       118 L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g  197 (595)
                      |++|++++.                        .. +..  .+|++|+|++|++++.  ..|+.|.+|++|+|++|+|++
T Consensus        92 L~~N~l~~l------------------------~~-~~~--~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~  142 (263)
T 1xeu_A           92 VNRNRLKNL------------------------NG-IPS--ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS  142 (263)
T ss_dssp             CCSSCCSCC------------------------TT-CCC--SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred             CCCCccCCc------------------------Cc-ccc--CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence            666665531                        11 111  4566677777776653  468899999999999999996


Q ss_pred             CCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          198 SLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       198 ~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      .  ..++.+.+|++|+|++|+|++.  ..+.++.+|+.|+|++|.+++...
T Consensus       143 ~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          143 I--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             C--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             C--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence            4  3789999999999999999976  789999999999999999988743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.78  E-value=2.3e-19  Score=206.53  Aligned_cols=194  Identities=16%  Similarity=0.178  Sum_probs=119.0

Q ss_pred             ceeEEEccCCCCCCC---------CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCC
Q 007628           17 VVASIDLNHADIAGY---------LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSL   87 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~---------lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L   87 (595)
                      .++.++|++|+|.++         ..+.|..+..|++|+|++|+|. .++..+.+|.+|++|+|++|+|+ .++..|.+|
T Consensus       192 ~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  269 (727)
T 4b8c_D          192 LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL  269 (727)
T ss_dssp             ------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred             HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence            455666666665543         3566888999999999999998 67777779999999999999999 788889999


Q ss_pred             CCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHH
Q 007628           88 PKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEII  165 (595)
Q Consensus        88 ~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~  165 (595)
                      .+|++|||++|+|+ .++..+.. .+|++|+|++|+|+ .++..|.. .+|++|+|++|.|++.++..++.+...+..|+
T Consensus       270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~  347 (727)
T 4b8c_D          270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY  347 (727)
T ss_dssp             TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence            99999999999999 77777665 78999999999987 55655544 68999999999999999888877644556688


Q ss_pred             hhccccCCCCCCccCCCccceEEeccCc--------cccCCCCCCcCCCCCccEEEccCCcCC
Q 007628          166 LMNDNLTGCLPPQIGMLKNLTVFDVSFN--------HLQGSLPSSIGNMKSLEQLNVAHNRFT  220 (595)
Q Consensus       166 Ls~N~l~g~ip~~~~~L~~L~~LdLs~N--------~L~g~lP~~l~~L~~L~~L~Ls~N~Ls  220 (595)
                      |.+|.+++.++.++      +.|+|++|        .|.+.+...+.++.+++.+.+++|.+.
T Consensus       348 l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          348 LRDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             HHHCCCCCCCCCC-----------------------------------------------CCC
T ss_pred             hccCcccCcCcccc------ceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence            99999998877654      45556555        344444445566777777788888775

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=2.7e-18  Score=168.68  Aligned_cols=135  Identities=21%  Similarity=0.295  Sum_probs=112.3

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      .+|+.|+|++|+|+++....|.++.+|++|+|++|+|+++.++.|.+|.+|++|+|++|+|+++....|.++.+|++|+|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            47999999999999988889999999999999999999999999999999999999999999777777899999999999


Q ss_pred             cCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC
Q 007628           96 RFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL  175 (595)
Q Consensus        96 s~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i  175 (595)
                      ++|+|++..                                                                       
T Consensus       112 ~~N~l~~~~-----------------------------------------------------------------------  120 (220)
T 2v9t_B          112 NANKINCLR-----------------------------------------------------------------------  120 (220)
T ss_dssp             CSSCCCCCC-----------------------------------------------------------------------
T ss_pred             CCCCCCEeC-----------------------------------------------------------------------
Confidence            999887321                                                                       


Q ss_pred             CCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCC
Q 007628          176 PPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTG  221 (595)
Q Consensus       176 p~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg  221 (595)
                      +..|..|.+|++|+|++|+|++.....|..+.+|++|+|++|.|..
T Consensus       121 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          121 VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            1234456667777777777776666667777777777777777764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.77  E-value=4e-20  Score=212.82  Aligned_cols=217  Identities=16%  Similarity=0.172  Sum_probs=120.2

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcE-----EEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAI-----FHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL   90 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~-----L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L   90 (595)
                      ..++.|+|.+|++..+ ...+..+.+|+.     +++..|++. +..+.|..+.+|++|+|++|+|. .++..+.+|.+|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            4588899999988773 333333333333     333444444 55778999999999999999998 677777799999


Q ss_pred             CEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHHhhc
Q 007628           91 KYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMN  168 (595)
Q Consensus        91 ~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~  168 (595)
                      ++|+|++|+|+ .++..+.. .+|++|+|++|+|+ .++..+.. .+|++|+|++|.|+ .++.+|+.+ .+|++|+|++
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l-~~L~~L~L~~  325 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNL-CNLQFLGVEG  325 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSC-TTCCCEECTT
T ss_pred             CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcC-CCccEEeCCC
Confidence            99999999999 78876655 89999999999999 66766654 78999999999997 778888888 8999999999


Q ss_pred             cccCCCCCCccCCCcc-ceEEeccCccccCCCCCCcCCCCCccEEEccCC--------cCCCCCchhccCCCCCcEEEcc
Q 007628          169 DNLTGCLPPQIGMLKN-LTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHN--------RFTGVIPSSVCQLPNLQNFTYS  239 (595)
Q Consensus       169 N~l~g~ip~~~~~L~~-L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N--------~Lsg~iP~~l~~l~~L~~L~Ls  239 (595)
                      |.|++.++..|..+.. +..|+|++|.++|.++..+      +.|+|++|        .|.+.+...+.++.+++.+.++
T Consensus       326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l------~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls  399 (727)
T 4b8c_D          326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER------RFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLS  399 (727)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------------------------------------
T ss_pred             CccCCCChHHHhhcchhhhHHhhccCcccCcCcccc------ceeEeecccccccccCCccccccchhhcccccceeeee
Confidence            9999988888876533 3458899999998887754      44555555        4555555566677777888889


Q ss_pred             cccCCC
Q 007628          240 FNYFTG  245 (595)
Q Consensus       240 ~N~Lsg  245 (595)
                      +|.+++
T Consensus       400 ~Nil~~  405 (727)
T 4b8c_D          400 YNTLCQ  405 (727)
T ss_dssp             --CCCG
T ss_pred             cccccc
Confidence            998863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=3.8e-22  Score=223.33  Aligned_cols=204  Identities=16%  Similarity=0.122  Sum_probs=153.0

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCc-------------CCCCCchhhcCCCCCCEEe-ccCCcCCC
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNR-------------FCGVVPSTFRRLKLLYEVD-LSNNRFVG   78 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~-------------l~~~lp~~~~~L~~L~~L~-Ls~N~Lsg   78 (595)
                      -.+..|+.|+|++|+|+ .++..|++|++|+.|+|++|.             +.+.++..|++|.+|+.|+ ++.|++. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            45677889999999997 479999999999999998775             6677888899999999999 6776543 


Q ss_pred             cCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCccccccc
Q 007628           79 KFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMG  158 (595)
Q Consensus        79 ~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~  158 (595)
                                +|+.|+|++|.|++     +....|+.|+|++|++++ ++......+|++|+|++|+|+ .++..|+.+ 
T Consensus       424 ----------~L~~l~l~~n~i~~-----l~~~~L~~L~Ls~n~l~~-lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-  485 (567)
T 1dce_A          424 ----------DLRSKFLLENSVLK-----MEYADVRVLHLAHKDLTV-LCHLEQLLLVTHLDLSHNRLR-ALPPALAAL-  485 (567)
T ss_dssp             ----------HHHHHHHHHHHHHH-----HHHTTCSEEECTTSCCSS-CCCGGGGTTCCEEECCSSCCC-CCCGGGGGC-
T ss_pred             ----------hhhhhhhhcccccc-----cCccCceEEEecCCCCCC-CcCccccccCcEeecCccccc-ccchhhhcC-
Confidence                      23333344443331     111234444444444443 233233356777777777777 677888888 


Q ss_pred             chhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCC-CCCcCCCCCccEEEccCCcCCCCCch---hccCCCCCc
Q 007628          159 KTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSL-PSSIGNMKSLEQLNVAHNRFTGVIPS---SVCQLPNLQ  234 (595)
Q Consensus       159 ~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~l-P~~l~~L~~L~~L~Ls~N~Lsg~iP~---~l~~l~~L~  234 (595)
                      .+|++|+|++|+|++ ++ .|+.|.+|++|+|++|+|++.. +..|+.|.+|++|+|++|.|++..+.   .+..+.+|+
T Consensus       486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~  563 (567)
T 1dce_A          486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  563 (567)
T ss_dssp             TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence            789999999999986 55 8999999999999999999876 89999999999999999999976542   345588999


Q ss_pred             EEEc
Q 007628          235 NFTY  238 (595)
Q Consensus       235 ~L~L  238 (595)
                      .||+
T Consensus       564 ~L~l  567 (567)
T 1dce_A          564 SILT  567 (567)
T ss_dssp             EEEC
T ss_pred             ccCC
Confidence            9975

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=4.1e-19  Score=171.13  Aligned_cols=89  Identities=13%  Similarity=0.276  Sum_probs=63.4

Q ss_pred             cccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCcc-ccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCC
Q 007628          152 GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNH-LQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQL  230 (595)
Q Consensus       152 ~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~-L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l  230 (595)
                      ..|+.+ .+|++|+|++|++++.+...|+.|.+|++|+|++|. ++ .+. .|..|.+|++|+|++|+|++..  .+.++
T Consensus       106 ~~l~~l-~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l  180 (197)
T 4ezg_A          106 PNLSGL-TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDF  180 (197)
T ss_dssp             CCCTTC-TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGC
T ss_pred             hhhcCC-CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccC
Confidence            334444 455666666666655555667778889999999998 54 554 6888899999999999998643  78888


Q ss_pred             CCCcEEEcccccCCC
Q 007628          231 PNLQNFTYSFNYFTG  245 (595)
Q Consensus       231 ~~L~~L~Ls~N~Lsg  245 (595)
                      .+|++|+|++|+|.+
T Consensus       181 ~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          181 PKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SSCCEEEECBC----
T ss_pred             CCCCEEEeeCcccCC
Confidence            999999999998764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.76  E-value=7.3e-19  Score=169.34  Aligned_cols=157  Identities=13%  Similarity=0.186  Sum_probs=110.0

Q ss_pred             hhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCC
Q 007628           35 EIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLD  114 (595)
Q Consensus        35 ~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~  114 (595)
                      ..+++.+|+.|+|++|+|.. +. .|..+.+|++|+|++|+++..  ..|.++.+|++|+|++|+|++.....+..    
T Consensus        39 ~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~----  110 (197)
T 4ezg_A           39 TEAQMNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSG----  110 (197)
T ss_dssp             BHHHHHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTT----
T ss_pred             ChhhcCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcC----
Confidence            34667788888888888884 34 688888888888888876632  46788888888888888887533332221    


Q ss_pred             eeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCcc
Q 007628          115 AIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNH  194 (595)
Q Consensus       115 ~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~  194 (595)
                                        ..+|++|+|++|++++.+...|+.+ .+|++|+|++|++.+.+. .|..|.+|++|+|++|.
T Consensus       111 ------------------l~~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A          111 ------------------LTSLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             ------------------CTTCCEEECCSSBCBGGGHHHHTTC-SSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC
T ss_pred             ------------------CCCCCEEEecCCccCcHhHHHHhhC-CCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC
Confidence                              2344555555555555555556555 667777777776333444 67889999999999999


Q ss_pred             ccCCCCCCcCCCCCccEEEccCCcCCC
Q 007628          195 LQGSLPSSIGNMKSLEQLNVAHNRFTG  221 (595)
Q Consensus       195 L~g~lP~~l~~L~~L~~L~Ls~N~Lsg  221 (595)
                      |++ +. .+..+.+|++|+|++|+|.+
T Consensus       171 i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          171 VHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            985 33 78899999999999999864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=1.1e-18  Score=184.00  Aligned_cols=178  Identities=17%  Similarity=0.173  Sum_probs=127.4

Q ss_pred             CEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCC
Q 007628           67 YEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDL  146 (595)
Q Consensus        67 ~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l  146 (595)
                      +.|++++|+|+ .++..+.  ..|++|||++|+|++.....+.                     ....+|++|+|++|+|
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~---------------------~~l~~L~~L~L~~N~i   76 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTP---------------------TRLTNLHSLLLSHNHL   76 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSS---------------------SCCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhh---------------------hcccccCEEECCCCcC
Confidence            46777777777 3454432  3467777777777632222111                     0235566777777777


Q ss_pred             CCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchh
Q 007628          147 GGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSS  226 (595)
Q Consensus       147 ~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~  226 (595)
                      ++...+.|..+ .+|++|+|++|+|.+.....|..|.+|++|+|++|+|++..+..|.+|.+|++|+|++|+|++.....
T Consensus        77 ~~i~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A           77 NFISSEAFVPV-PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             CEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred             CccChhhccCC-CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHH
Confidence            76666667777 78899999999988777788999999999999999999888899999999999999999999755555


Q ss_pred             c---cCCCCCcEEEcccccCCCCCCccccccCC---CCcccccCCCCCC
Q 007628          227 V---CQLPNLQNFTYSFNYFTGEPPSCTAAAGG---GGRMMAARPADCS  269 (595)
Q Consensus       227 l---~~l~~L~~L~Ls~N~Lsg~~p~~~~~~~~---~~~~~~~~~~~c~  269 (595)
                      |   ..+.+|+.|||++|+|++...........   ....+.+|.+.|+
T Consensus       156 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             TC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             hcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence            5   67999999999999999765433322211   2334555666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.75  E-value=4.2e-18  Score=167.32  Aligned_cols=137  Identities=21%  Similarity=0.261  Sum_probs=114.0

Q ss_pred             CceeEEEccCCCCCCCCc-hhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           16 RVVASIDLNHADIAGYLP-PEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp-~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      ..++.|+|++|+|+++.. ..|.++.+|++|+|++|+|+++...+|.++.+|++|+|++|+|+++....|.+|.+|++|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            357899999999998754 5589999999999999999998888999999999999999999988888999999999999


Q ss_pred             ccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCC
Q 007628           95 LRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC  174 (595)
Q Consensus        95 Ls~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~  174 (595)
                      |++|+|++..                                                                      
T Consensus       112 Ls~N~l~~~~----------------------------------------------------------------------  121 (220)
T 2v70_A          112 LRSNRITCVG----------------------------------------------------------------------  121 (220)
T ss_dssp             CTTSCCCCBC----------------------------------------------------------------------
T ss_pred             CCCCcCCeEC----------------------------------------------------------------------
Confidence            9999887321                                                                      


Q ss_pred             CCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628          175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI  223 (595)
Q Consensus       175 ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i  223 (595)
                       +..|..|.+|++|+|++|+|++..+..|..+.+|++|+|++|.|++..
T Consensus       122 -~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          122 -NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             -TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             -HhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence             223445667777778777777766777777777888888888777543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=2.8e-18  Score=164.84  Aligned_cols=132  Identities=22%  Similarity=0.318  Sum_probs=103.8

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCch-hhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPS-TFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~-~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      .+.|++++|+|+. ++..+..  +|++|+|++|+|+++... .|+++.+|++|+|++|+|+++.+..|.++.+|++|||+
T Consensus        10 ~~~l~~s~~~l~~-ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           10 GTTVDCTGRGLKE-IPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCcCc-CccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            4689999999865 5555543  889999999999877664 48899999999999999998888889999999999999


Q ss_pred             CCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCC
Q 007628           97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP  176 (595)
Q Consensus        97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip  176 (595)
                      +|+|++.                                                                       ..
T Consensus        87 ~N~l~~~-----------------------------------------------------------------------~~   95 (192)
T 1w8a_A           87 ENKIKEI-----------------------------------------------------------------------SN   95 (192)
T ss_dssp             SCCCCEE-----------------------------------------------------------------------CS
T ss_pred             CCcCCcc-----------------------------------------------------------------------CH
Confidence            8887621                                                                       11


Q ss_pred             CccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCC
Q 007628          177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVI  223 (595)
Q Consensus       177 ~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~i  223 (595)
                      ..|..+.+|++|+|++|+|++..++.|..+.+|++|+|++|.|++..
T Consensus        96 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           96 KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            23455667888888888888777788888888888888888887654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=6.3e-18  Score=162.41  Aligned_cols=132  Identities=19%  Similarity=0.287  Sum_probs=109.0

Q ss_pred             CEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcc-cccccchhhHHHhhcc
Q 007628           91 KYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGS-IGKMGKTLNEIILMND  169 (595)
Q Consensus        91 ~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~-l~~l~~~L~~L~Ls~N  169 (595)
                      ++||+++|+|+ .++..+..                        .+++|+|++|+|++..... |+.+ .+|++|+|++|
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~------------------------~l~~L~l~~n~i~~~~~~~~~~~l-~~L~~L~Ls~N   64 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL------------------------HTTELLLNDNELGRISSDGLFGRL-PHLVKLELKRN   64 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT------------------------TCSEEECCSCCCCSBCCSCSGGGC-TTCCEEECCSS
T ss_pred             CEEEcCCCCcC-cCccCCCC------------------------CCCEEECCCCcCCccCCccccccC-CCCCEEECCCC
Confidence            67777777775 45543322                        4555666666665555443 5556 78999999999


Q ss_pred             ccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          170 NLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       170 ~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      +|++.++..|..+.+|++|+|++|+|++...+.|..+.+|++|+|++|+|++.++..|..+.+|++|+|++|.|+|...
T Consensus        65 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           65 QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            9998889999999999999999999998888889999999999999999999999999999999999999999998754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=9.7e-18  Score=174.43  Aligned_cols=228  Identities=15%  Similarity=0.091  Sum_probs=143.8

Q ss_pred             CCceeEEEccCCCCCCCCchhhcC-CCCCcEEEccCCcCC--------------------CCCchhhcC--------CCC
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGR-LTDLAIFHINSNRFC--------------------GVVPSTFRR--------LKL   65 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~-L~~L~~L~Ls~N~l~--------------------~~lp~~~~~--------L~~   65 (595)
                      +.+|+.|+|+++ |....-..+.+ +.+|++|||++|+|.                    .+-..+|.+        |.+
T Consensus        24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~  102 (329)
T 3sb4_A           24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT  102 (329)
T ss_dssp             HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred             hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence            334666666543 22111122222 556666777666666                    223356777        899


Q ss_pred             CCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCc--cc---cCCC--cccCCCCce-
Q 007628           66 LYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNR--FQ---FGIP--ENLGNSPVS-  137 (595)
Q Consensus        66 L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~--l~---~~~p--~~l~~~~L~-  137 (595)
                      |+.|+|.+ +|+.+-..+|.+|.+|++|+|++|.+. .|....|...++.+.|..+.  ..   ..+.  .+.....|+ 
T Consensus       103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~  180 (329)
T 3sb4_A          103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET  180 (329)
T ss_dssp             CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred             CcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence            99999988 788666778999999999999999887 56666665433333333222  10   0000  011111222 


Q ss_pred             -------------------------eEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccC
Q 007628          138 -------------------------VLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSF  192 (595)
Q Consensus       138 -------------------------~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~  192 (595)
                                               .+.+.++ +....-..+.+.+.+|+.|+|.+|++..+-..+|.+|.+|++|+|.+
T Consensus       181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~  259 (329)
T 3sb4_A          181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH  259 (329)
T ss_dssp             EEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT
T ss_pred             eEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc
Confidence                                     2222222 11111111222236788899999888877777899999999999998


Q ss_pred             ccccCCCCCCcCCCCCcc-EEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          193 NHLQGSLPSSIGNMKSLE-QLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       193 N~L~g~lP~~l~~L~~L~-~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      | ++..-..+|.+|.+|+ .|+|.+ +++..-..+|.+|.+|+.|+|++|.++..-.
T Consensus       260 n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          260 N-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             T-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred             c-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch
Confidence            8 7766677889999998 999988 6765666889999999999998888875544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.69  E-value=3.1e-19  Score=199.34  Aligned_cols=234  Identities=13%  Similarity=0.033  Sum_probs=161.8

Q ss_pred             CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCc-hhhcCCCCCCEEeccCCcCCCcCchhcCCCCC
Q 007628           11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVP-STFRRLKLLYEVDLSNNRFVGKFPKLFLSLPK   89 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp-~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~   89 (595)
                      ....+.+|+.|+|+++.. +.++..+..+.+|++|+|++|.|++... ..+.++.+|++|+|+++...+.+...+.++++
T Consensus       265 ~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          265 NLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             CCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred             HhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence            345666777788877533 3456677788889999999988765433 34678899999999844333334445567888


Q ss_pred             CCEEEccC-----------CCCCCCCCcccc--ccCCCeeeccCCccccCCCcccC--CCCceeEEee----ccCCCCC-
Q 007628           90 LKYLDLRF-----------NEFEGSVPSKLF--DKDLDAIFLNDNRFQFGIPENLG--NSPVSVLVFA----NNDLGGC-  149 (595)
Q Consensus        90 L~~LdLs~-----------N~l~g~ip~~l~--~~~L~~L~L~~N~l~~~~p~~l~--~~~L~~L~L~----~N~l~~~-  149 (595)
                      |++|+|++           |.+++..-..++  ..+|++|+|..|++++.....+.  ..+|+.|+|.    .|++++. 
T Consensus       344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p  423 (592)
T 3ogk_B          344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP  423 (592)
T ss_dssp             CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred             CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence            99999993           555532222222  26899999988888765444443  4578899986    5667653 


Q ss_pred             ----cCcccccccchhhHHHhhcc--ccCCCCCCccCC-CccceEEeccCccccC-CCCCCcCCCCCccEEEccCCcCCC
Q 007628          150 ----IPGSIGKMGKTLNEIILMND--NLTGCLPPQIGM-LKNLTVFDVSFNHLQG-SLPSSIGNMKSLEQLNVAHNRFTG  221 (595)
Q Consensus       150 ----ip~~l~~l~~~L~~L~Ls~N--~l~g~ip~~~~~-L~~L~~LdLs~N~L~g-~lP~~l~~L~~L~~L~Ls~N~Lsg  221 (595)
                          +...+..+ .+|++|+|++|  .+++.....++. +.+|++|+|++|++++ .+...+..+.+|++|+|++|.|++
T Consensus       424 ~~~~~~~~~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  502 (592)
T 3ogk_B          424 LDNGVRSLLIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE  502 (592)
T ss_dssp             CHHHHHHHHHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred             HHHHHHHHHHhC-CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence                22224444 77888888643  344433333433 7889999999999875 344456788999999999999875


Q ss_pred             C-CchhccCCCCCcEEEcccccCCCC
Q 007628          222 V-IPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       222 ~-iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      . +...+..+.+|+.|+|++|++++.
T Consensus       503 ~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          503 RAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHHHHhcCccCeeECcCCcCCHH
Confidence            4 344556789999999999998876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=5.4e-17  Score=151.81  Aligned_cols=134  Identities=20%  Similarity=0.166  Sum_probs=79.8

Q ss_pred             CCCCcEEEccCCcCC-CCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeee
Q 007628           39 LTDLAIFHINSNRFC-GVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIF  117 (595)
Q Consensus        39 L~~L~~L~Ls~N~l~-~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~  117 (595)
                      ..+|++|+|++|+|+ +.++..|.++.+|++|+|++|+|++.  ..|.++.+|++|||++|+|++.++            
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~------------   88 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD------------   88 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC------------
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH------------
Confidence            356677777777766 55666666677777777777776654  566666667777776666653221            


Q ss_pred             ccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccC
Q 007628          118 LNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG  197 (595)
Q Consensus       118 L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g  197 (595)
                                                                                 ..+..|.+|++|+|++|.|++
T Consensus        89 -----------------------------------------------------------~~~~~l~~L~~L~Ls~N~l~~  109 (168)
T 2ell_A           89 -----------------------------------------------------------MLAEKLPNLTHLNLSGNKLKD  109 (168)
T ss_dssp             -----------------------------------------------------------HHHHHCTTCCEEECBSSSCCS
T ss_pred             -----------------------------------------------------------HHHhhCCCCCEEeccCCccCc
Confidence                                                                       122234455666666666553


Q ss_pred             CC-CCCcCCCCCccEEEccCCcCCCCCc---hhccCCCCCcEEEcccccCCC
Q 007628          198 SL-PSSIGNMKSLEQLNVAHNRFTGVIP---SSVCQLPNLQNFTYSFNYFTG  245 (595)
Q Consensus       198 ~l-P~~l~~L~~L~~L~Ls~N~Lsg~iP---~~l~~l~~L~~L~Ls~N~Lsg  245 (595)
                      .. ...|..+.+|++|+|++|.|++...   ..|..+.+|++|++++|.+..
T Consensus       110 ~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          110 ISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             SGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             chhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            21 1455566666666666666664443   356666666666666666543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=2.8e-17  Score=153.77  Aligned_cols=86  Identities=23%  Similarity=0.342  Sum_probs=79.3

Q ss_pred             CCCceeEEEccCCCCC-CCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628           14 SLRVVASIDLNHADIA-GYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY   92 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~-~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~   92 (595)
                      ...+|+.|+|++|+|+ +.++..|.++.+|++|+|++|+|+++  ..|.++.+|++|+|++|+|++.++..+.++.+|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            4578999999999998 66788889999999999999999976  88999999999999999999888888888999999


Q ss_pred             EEccCCCCC
Q 007628           93 LDLRFNEFE  101 (595)
Q Consensus        93 LdLs~N~l~  101 (595)
                      |||++|+|+
T Consensus       100 L~Ls~N~l~  108 (168)
T 2ell_A          100 LNLSGNKLK  108 (168)
T ss_dssp             EECBSSSCC
T ss_pred             EeccCCccC
Confidence            999999987

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=6.8e-17  Score=155.54  Aligned_cols=94  Identities=20%  Similarity=0.259  Sum_probs=76.8

Q ss_pred             cccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCC
Q 007628          152 GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLP  231 (595)
Q Consensus       152 ~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~  231 (595)
                      ..|..+ .+|++|+|++|+|++.....|.+|.+|++|+|++|+|++..++.|..|.+|++|+|++|+|++.....|..+.
T Consensus        48 ~~~~~l-~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~  126 (193)
T 2wfh_A           48 KELSNY-KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS  126 (193)
T ss_dssp             GGGGGC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred             HHhhcc-cCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc
Confidence            344444 5677777777777766677788889999999999999988788899999999999999999876667788899


Q ss_pred             CCcEEEcccccCCCC
Q 007628          232 NLQNFTYSFNYFTGE  246 (595)
Q Consensus       232 ~L~~L~Ls~N~Lsg~  246 (595)
                      +|+.|+|++|.|.++
T Consensus       127 ~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          127 ALSHLAIGANPLYCD  141 (193)
T ss_dssp             TCCEEECCSSCEECS
T ss_pred             cccEEEeCCCCeecC
Confidence            999999999998764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=4.4e-16  Score=149.86  Aligned_cols=129  Identities=22%  Similarity=0.328  Sum_probs=100.8

Q ss_pred             eEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCC
Q 007628           19 ASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN   98 (595)
Q Consensus        19 ~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N   98 (595)
                      ++|++++|+|+. ++..+.  .+|++|+|++|+|+ .++..|.++.+|++|+|++|+|+++....|.+|.+|++|||++|
T Consensus        13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            578999999886 444443  57899999999998 56688999999999999999999887788888999999999888


Q ss_pred             CCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCc
Q 007628           99 EFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQ  178 (595)
Q Consensus        99 ~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~  178 (595)
                      +|++                                                                       .....
T Consensus        89 ~l~~-----------------------------------------------------------------------i~~~~   97 (193)
T 2wfh_A           89 RLRC-----------------------------------------------------------------------IPPRT   97 (193)
T ss_dssp             CCCB-----------------------------------------------------------------------CCTTT
T ss_pred             ccCE-----------------------------------------------------------------------eCHHH
Confidence            8762                                                                       11234


Q ss_pred             cCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCC
Q 007628          179 IGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV  222 (595)
Q Consensus       179 ~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~  222 (595)
                      |..|.+|++|+|++|+|++.....|..+.+|++|+|++|.|.+.
T Consensus        98 f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            55677788888888888865555677888888888888887653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=8.3e-17  Score=147.45  Aligned_cols=60  Identities=20%  Similarity=0.175  Sum_probs=34.2

Q ss_pred             CCCcEEEccCCcCC-CCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCC
Q 007628           40 TDLAIFHINSNRFC-GVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFE  101 (595)
Q Consensus        40 ~~L~~L~Ls~N~l~-~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~  101 (595)
                      .+|+.|+|++|+|+ +.++..|.++.+|++|+|++|+|++.  ..|.++.+|++|||++|+|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~   77 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS   77 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc
Confidence            45555555555555 44555555555666666666655544  45555556666666655554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.66  E-value=7.9e-17  Score=147.59  Aligned_cols=84  Identities=21%  Similarity=0.307  Sum_probs=52.2

Q ss_pred             CceeEEEccCCCCC-CCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           16 RVVASIDLNHADIA-GYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        16 ~~L~~LdLs~n~i~-~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      .+|+.|+|++|+|+ +.++..|..+.+|++|+|++|+|+++  ..|+++.+|++|+|++|+|++.++..+.++.+|++||
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666665 44555566666666666666666654  5566666666666666666655555555566666666


Q ss_pred             ccCCCCC
Q 007628           95 LRFNEFE  101 (595)
Q Consensus        95 Ls~N~l~  101 (595)
                      |++|+|+
T Consensus        95 ls~N~i~  101 (149)
T 2je0_A           95 LSGNKIK  101 (149)
T ss_dssp             CTTSCCC
T ss_pred             CCCCcCC
Confidence            6666554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=1.1e-15  Score=144.25  Aligned_cols=81  Identities=23%  Similarity=0.312  Sum_probs=49.1

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF   97 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~   97 (595)
                      ++.|++++++++.+ +..+  ..+|++|+|++|+|+++....|+++.+|++|+|++|+|+++....|.++.+|++|||++
T Consensus         9 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            45677777776653 2222  34666666666666655555566666666666666666655555556666666666666


Q ss_pred             CCCC
Q 007628           98 NEFE  101 (595)
Q Consensus        98 N~l~  101 (595)
                      |+|+
T Consensus        86 N~l~   89 (177)
T 2o6r_A           86 NKLQ   89 (177)
T ss_dssp             SCCC
T ss_pred             CCcc
Confidence            6554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.64  E-value=4.4e-18  Score=189.93  Aligned_cols=224  Identities=14%  Similarity=0.139  Sum_probs=105.8

Q ss_pred             CCceeEEEccCCCCCCC----CchhhcCCCCCcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCCCcCchhcCC
Q 007628           15 LRVVASIDLNHADIAGY----LPPEIGRLTDLAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLS   86 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~----lp~~~~~L~~L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~   86 (595)
                      +.+|+.|+|++|++++.    +...+.++.+|+.|+|++|+++++    +...+.++.+|++|+|++|.+.+ +...+.+
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~  241 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA  241 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence            34556666666655443    222334555666666666665522    22334455666666666665553 3344444


Q ss_pred             CCCCCEEEccCCCCC--------------------------CCCCccccc-cCCCeeeccCCccccCCCc-c-cCCCCce
Q 007628           87 LPKLKYLDLRFNEFE--------------------------GSVPSKLFD-KDLDAIFLNDNRFQFGIPE-N-LGNSPVS  137 (595)
Q Consensus        87 L~~L~~LdLs~N~l~--------------------------g~ip~~l~~-~~L~~L~L~~N~l~~~~p~-~-l~~~~L~  137 (595)
                      +.+|++|+++++...                          +.++..+.. .+|++|+|++|.+.+.... . ....+|+
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            555555555421111                          011111111 3455555555553322111 1 1223455


Q ss_pred             eEEeeccCCCCCcCcccccccchhhHHHhhc-----------cccCCC-CCCccCCCccceEEeccCccccCCCCCCcCC
Q 007628          138 VLVFANNDLGGCIPGSIGKMGKTLNEIILMN-----------DNLTGC-LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGN  205 (595)
Q Consensus       138 ~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~-----------N~l~g~-ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~  205 (595)
                      +|+|. +.+.......+.....+|++|+|.+           |.+++. +...+..|.+|++|+|+.|++++.....++.
T Consensus       322 ~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          322 VLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             EEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             EEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence            55555 2222221122222224566666662           233211 1111233566777777666666554444444


Q ss_pred             -CCCccEEEcc----CCcCCCC-----CchhccCCCCCcEEEccc
Q 007628          206 -MKSLEQLNVA----HNRFTGV-----IPSSVCQLPNLQNFTYSF  240 (595)
Q Consensus       206 -L~~L~~L~Ls----~N~Lsg~-----iP~~l~~l~~L~~L~Ls~  240 (595)
                       +.+|++|+|+    .|+|++.     +...+.++.+|+.|+|++
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~  445 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL  445 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence             6677777774    5666653     333455677777777764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.62  E-value=1.6e-15  Score=143.18  Aligned_cols=113  Identities=19%  Similarity=0.243  Sum_probs=91.9

Q ss_pred             CceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEc
Q 007628          135 PVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNV  214 (595)
Q Consensus       135 ~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~L  214 (595)
                      .|++|+|++|+|++.....|..+ .+|++|+|++|+|++.....|+.+.+|++|+|++|+|++.....|..+.+|++|+|
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKL-TQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCc-ccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            45556666666655544555555 67888888888888776677889999999999999999777777899999999999


Q ss_pred             cCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          215 AHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       215 s~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      ++|+|++.....|..+.+|++|+|++|.|++...
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            9999997776778889999999999999998765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.61  E-value=2.5e-18  Score=165.73  Aligned_cols=156  Identities=21%  Similarity=0.234  Sum_probs=101.3

Q ss_pred             hcCCCCCcEEEccCCcCCCCCch------hhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCcccc
Q 007628           36 IGRLTDLAIFHINSNRFCGVVPS------TFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLF  109 (595)
Q Consensus        36 ~~~L~~L~~L~Ls~N~l~~~lp~------~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~  109 (595)
                      |..+..|+.++|++++|.|.++.      .|.++.+|++|+|++|+|++ ++ .|.++.+|++|||++|+|+ .++..+.
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            44556666666666666666554      77777888888888887775 44 6777777778877777776 3332221


Q ss_pred             ccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEe
Q 007628          110 DKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD  189 (595)
Q Consensus       110 ~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~Ld  189 (595)
                      .                                              + .+|++|+|++|++++ ++ .|+.+.+|++|+
T Consensus        91 ~----------------------------------------------~-~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           91 V----------------------------------------------A-DTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             H----------------------------------------------H-HHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             c----------------------------------------------C-CcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            1                                              1 223333333333332 11 345667888888


Q ss_pred             ccCccccCCCC-CCcCCCCCccEEEccCCcCCCCCch----------hccCCCCCcEEEcccccCCC
Q 007628          190 VSFNHLQGSLP-SSIGNMKSLEQLNVAHNRFTGVIPS----------SVCQLPNLQNFTYSFNYFTG  245 (595)
Q Consensus       190 Ls~N~L~g~lP-~~l~~L~~L~~L~Ls~N~Lsg~iP~----------~l~~l~~L~~L~Ls~N~Lsg  245 (595)
                      |++|.|++... ..+..+.+|++|+|++|.|++.++.          .+..+.+|+.||  +|.++.
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            88888874222 4677888888999988888766543          377888999887  666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=1.1e-15  Score=158.99  Aligned_cols=220  Identities=9%  Similarity=0.012  Sum_probs=166.2

Q ss_pred             CCceeEEEccCCCCC--------------------CCCchhhcC--------CCCCcEEEccCCcCCCCCchhhcCCCCC
Q 007628           15 LRVVASIDLNHADIA--------------------GYLPPEIGR--------LTDLAIFHINSNRFCGVVPSTFRRLKLL   66 (595)
Q Consensus        15 l~~L~~LdLs~n~i~--------------------~~lp~~~~~--------L~~L~~L~Ls~N~l~~~lp~~~~~L~~L   66 (595)
                      +.+|+.|||++|+|.                    .+-...|.+        |.+|+.|+|.+ +|+.+-..+|.+|.+|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            567999999999988                    233456777        99999999999 8888888899999999


Q ss_pred             CEEeccCCcCCCcCchhcCCCCCCCEEEccCCCC---CCCCCccccc--cCC--------------------------Ce
Q 007628           67 YEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEF---EGSVPSKLFD--KDL--------------------------DA  115 (595)
Q Consensus        67 ~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l---~g~ip~~l~~--~~L--------------------------~~  115 (595)
                      ++|+|.+|.+..+...+|.++.+|.+|++..+.+   ...+....|.  ..|                          +.
T Consensus       127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~  206 (329)
T 3sb4_A          127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF  206 (329)
T ss_dssp             CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred             ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence            9999999999877788999988888888766321   0112211121  222                          22


Q ss_pred             eeccCCccccCCCccc-CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccce-EEeccCc
Q 007628          116 IFLNDNRFQFGIPENL-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLT-VFDVSFN  193 (595)
Q Consensus       116 L~L~~N~l~~~~p~~l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~-~LdLs~N  193 (595)
                      +.+.++.......... ...+|+.|+|.+|+++.+-...|..+ .+|++|+|.+| +..+-..+|.+|.+|+ .|+|.+ 
T Consensus       207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~-~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-  283 (329)
T 3sb4_A          207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK-KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-  283 (329)
T ss_dssp             EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC-TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-
T ss_pred             EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC-CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-
Confidence            2222211100000000 14689999999999987666667766 89999999998 7767778899999999 999998 


Q ss_pred             cccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEc
Q 007628          194 HLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTY  238 (595)
Q Consensus       194 ~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~L  238 (595)
                      +++.....+|.+|.+|++|+|++|+|+..-..+|.++.+|+.|+.
T Consensus       284 ~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          284 SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            777666789999999999999999999777789999999999864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=9.7e-16  Score=144.68  Aligned_cols=63  Identities=14%  Similarity=0.087  Sum_probs=41.1

Q ss_pred             hhcCCCCCcEEEccCCcCCCCCchhhcCCC-CCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCC
Q 007628           35 EIGRLTDLAIFHINSNRFCGVVPSTFRRLK-LLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFE  101 (595)
Q Consensus        35 ~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~-~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~  101 (595)
                      .|.++.+|++|+|++|+|+.+ . .+..+. +|++|+|++|+|++.  ..|.++.+|++|||++|+|+
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~   77 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC   77 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC
T ss_pred             hcCCcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc
Confidence            455666777777777777743 3 344443 777777777777754  56666777777777777665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.58  E-value=1.3e-14  Score=155.50  Aligned_cols=218  Identities=14%  Similarity=0.109  Sum_probs=155.7

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      +|+.|+|.++ |+.+...+|.++ +|+.|+|.+ .|..+-..+|.+|.+|+.|+|.+|+|+.+-..+|. +.+|+.|+|.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            4777777655 666666677775 588888875 66666667788888888888888888755555555 5788888887


Q ss_pred             CCCCCCCCCccccc--cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC--
Q 007628           97 FNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT--  172 (595)
Q Consensus        97 ~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~--  172 (595)
                      +| ++ .|....|.  .+|+.|+|.+| ++..-...|....|+.|.| .+.++.+....|.++ .+|+.|+|.+|.+.  
T Consensus       212 ~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c-~~L~~l~l~~~~~~~~  286 (401)
T 4fdw_A          212 VT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYC-PELAEVTTYGSTFNDD  286 (401)
T ss_dssp             TT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTC-TTCCEEEEESSCCCCC
T ss_pred             Cc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhHhhCC-CCCCEEEeCCccccCC
Confidence            54 55 55555554  57888888765 3333344455577888888 455665555666666 78888888877664  


Q ss_pred             ---CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          173 ---GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       173 ---g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                         .+-..+|.+|.+|+.|+|. |.++..-..+|.+|.+|+.|+|.+| ++..-..+|.++ +|+.|+|++|.+...
T Consensus       287 ~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l  360 (401)
T 4fdw_A          287 PEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV  360 (401)
T ss_dssp             TTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred             cccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence               3445678888899999998 4476566678888899999999655 665556788888 899999998876543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=1e-15  Score=144.47  Aligned_cols=85  Identities=21%  Similarity=0.192  Sum_probs=73.8

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCC-CCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLT-DLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK   91 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~-~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~   91 (595)
                      ..+.+|+.|+|++|+|+.+ . .+..+. +|++|+|++|+|+++  ..|.++.+|++|+|++|+|++.....|.++.+|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CCcCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            4567899999999999975 3 455555 999999999999976  7899999999999999999976556678999999


Q ss_pred             EEEccCCCCC
Q 007628           92 YLDLRFNEFE  101 (595)
Q Consensus        92 ~LdLs~N~l~  101 (595)
                      +|||++|+|+
T Consensus        92 ~L~L~~N~i~  101 (176)
T 1a9n_A           92 ELILTNNSLV  101 (176)
T ss_dssp             EEECCSCCCC
T ss_pred             EEECCCCcCC
Confidence            9999999986

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=1e-17  Score=161.45  Aligned_cols=154  Identities=16%  Similarity=0.263  Sum_probs=112.2

Q ss_pred             CCceeEEEccCCCCCCCCch------hhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCC
Q 007628           15 LRVVASIDLNHADIAGYLPP------EIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLP   88 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~------~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~   88 (595)
                      +.+|+.++|+++++.+.++.      .|.++.+|++|+|++|+|++ ++ .|.++.+|++|+|++|+|+ .++..+..+.
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~   93 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD   93 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence            34566677777777766655      89999999999999999997 55 8999999999999999999 6677788889


Q ss_pred             CCCEEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhc
Q 007628           89 KLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMN  168 (595)
Q Consensus        89 ~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~  168 (595)
                      +|++|||++|+|++ ++......+|++|+|++|++                       ++            +..+    
T Consensus        94 ~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~N~i-----------------------~~------------~~~~----  133 (198)
T 1ds9_A           94 TLEELWISYNQIAS-LSGIEKLVNLRVLYMSNNKI-----------------------TN------------WGEI----  133 (198)
T ss_dssp             HCSEEEEEEEECCC-HHHHHHHHHSSEEEESEEEC-----------------------CC------------HHHH----
T ss_pred             cCCEEECcCCcCCc-CCccccCCCCCEEECCCCcC-----------------------Cc------------hhHH----
Confidence            99999999999984 33211113344444443332                       21            0000    


Q ss_pred             cccCCCCCCccCCCccceEEeccCccccCCCCCC----------cCCCCCccEEEccCCcCCC
Q 007628          169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSS----------IGNMKSLEQLNVAHNRFTG  221 (595)
Q Consensus       169 N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~----------l~~L~~L~~L~Ls~N~Lsg  221 (595)
                              ..|..+.+|++|+|++|.+++.++..          +..+.+|++||  +|.++.
T Consensus       134 --------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          134 --------DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             --------HHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             --------HHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence                    24566888999999999997665543          77888999887  666653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.55  E-value=2.8e-14  Score=152.83  Aligned_cols=218  Identities=12%  Similarity=0.096  Sum_probs=172.2

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      .|+.|+|.+ +|+.+...+|.+|.+|+.|+|.+|+|+.+-..+|. +.+|+.|+|.++ +..+-..+|.+|.+|+.|+|.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            588999986 78877778999999999999999999977777777 689999999855 776777899999999999998


Q ss_pred             CCCCCCCCCccccc-cCCCeeeccCCccccCCCccc-CCCCceeEEeeccCCC-----CCcCcccccccchhhHHHhhcc
Q 007628           97 FNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENL-GNSPVSVLVFANNDLG-----GCIPGSIGKMGKTLNEIILMND  169 (595)
Q Consensus        97 ~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l-~~~~L~~L~L~~N~l~-----~~ip~~l~~l~~~L~~L~Ls~N  169 (595)
                      +| ++ .|....|. .+|+.|+|.++ ++..-...| .+.+|+.|+|.+|.+.     .+....|..+ .+|+.|+|. +
T Consensus       235 ~~-l~-~I~~~aF~~~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c-~~L~~l~l~-~  309 (401)
T 4fdw_A          235 EN-VS-TIGQEAFRESGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGC-PKLARFEIP-E  309 (401)
T ss_dssp             TT-CC-EECTTTTTTCCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTC-TTCCEECCC-T
T ss_pred             CC-cc-CccccccccCCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCC-ccCCeEEeC-C
Confidence            75 44 55555555 78999999543 443323333 3468999999988775     2334445555 789999998 4


Q ss_pred             ccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCC-CCcEEEcccccCC
Q 007628          170 NLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLP-NLQNFTYSFNYFT  244 (595)
Q Consensus       170 ~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~-~L~~L~Ls~N~Ls  244 (595)
                      ++..+-..+|.+|.+|+.|+|..| ++..-..+|.+| +|+.|+|++|.+.......|.++. +|+.|.|-.|.+.
T Consensus       310 ~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          310 SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            576666778999999999999665 665667889999 999999999999877777888884 7899999887653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.54  E-value=7.9e-17  Score=179.69  Aligned_cols=37  Identities=14%  Similarity=0.229  Sum_probs=22.8

Q ss_pred             CCCceeEEEccCCC--CCCC-CchhhcCCCCCcEEEccCC
Q 007628           14 SLRVVASIDLNHAD--IAGY-LPPEIGRLTDLAIFHINSN   50 (595)
Q Consensus        14 ~l~~L~~LdLs~n~--i~~~-lp~~~~~L~~L~~L~Ls~N   50 (595)
                      .+.+|+.|+|++|+  +... +...+.++.+|+.|+|++|
T Consensus       182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            55678888888876  2211 1112244677888888776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.52  E-value=2.7e-16  Score=175.33  Aligned_cols=105  Identities=14%  Similarity=0.137  Sum_probs=66.3

Q ss_pred             CCceeEEEccCCCCCCCCchhhc-CCCCCcEEEccCC-cCCCC-CchhhcCCCCCCEEeccCCcCCCcCchhc----CCC
Q 007628           15 LRVVASIDLNHADIAGYLPPEIG-RLTDLAIFHINSN-RFCGV-VPSTFRRLKLLYEVDLSNNRFVGKFPKLF----LSL   87 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~-~L~~L~~L~Ls~N-~l~~~-lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l----~~L   87 (595)
                      +.+|+.|+|++|.+++.....+. .+.+|++|+|++| .+++. +...+.++.+|++|+|++|.|++.....+    ..+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            45677888888877765555554 5778888888877 44432 33444577888888888887765433333    356


Q ss_pred             CCCCEEEccCCCCCCCCCcccc------ccCCCeeeccCC
Q 007628           88 PKLKYLDLRFNEFEGSVPSKLF------DKDLDAIFLNDN  121 (595)
Q Consensus        88 ~~L~~LdLs~N~l~g~ip~~l~------~~~L~~L~L~~N  121 (595)
                      .+|++|+|++|.  +.+....+      ..+|++|+|++|
T Consensus       184 ~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          184 TSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            678888888776  12221111      156777777766

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=1.6e-14  Score=135.86  Aligned_cols=109  Identities=18%  Similarity=0.227  Sum_probs=92.5

Q ss_pred             ceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEcc
Q 007628          136 VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVA  215 (595)
Q Consensus       136 L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls  215 (595)
                      .+.|++++|+|+. ++..+.   .+|++|+|++|+|++..+..|.+|.+|++|||++|+|++.....|..|.+|++|+|+
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc-cCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3456777777664 555543   578889999999998888899999999999999999997777778999999999999


Q ss_pred             CCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          216 HNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       216 ~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      +|+|++.....|.++.+|++|+|++|.|++...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998777789999999999999999998754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=9e-14  Score=130.78  Aligned_cols=105  Identities=25%  Similarity=0.361  Sum_probs=86.6

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      ..+.||+++|+|+. ++..+  ..+|++|+|++|+|+++.+..|.+|.+|++|+|++|+|+++..+.|.+|.+|++|||+
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            35789999999987 55555  3789999999999999989999999999999999999998888888999999999999


Q ss_pred             CCCCCCCCCccccc-cCCCeeeccCCccc
Q 007628           97 FNEFEGSVPSKLFD-KDLDAIFLNDNRFQ  124 (595)
Q Consensus        97 ~N~l~g~ip~~l~~-~~L~~L~L~~N~l~  124 (595)
                      +|+|++.....+.. .+|++|+|++|.|.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            99999544433322 56666666666655

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.47  E-value=8.3e-14  Score=131.66  Aligned_cols=108  Identities=19%  Similarity=0.234  Sum_probs=91.1

Q ss_pred             eeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccC
Q 007628          137 SVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAH  216 (595)
Q Consensus       137 ~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~  216 (595)
                      +.|++++|+++ .++..+.   .+|++|+|++|+|.+..+..|++|.+|++|+|++|+|++.....|..|.+|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            56777777775 4565554   5788899999999988888999999999999999999976666788999999999999


Q ss_pred             CcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          217 NRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       217 N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      |+|++.....|.++.+|++|+|++|.|.+...
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            99997766779999999999999999987654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.47  E-value=2.1e-13  Score=128.82  Aligned_cols=104  Identities=23%  Similarity=0.355  Sum_probs=85.1

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF   97 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~   97 (595)
                      .+.|++++|+|+. ++..+.  .+|++|+|++|+|+++.+..|++|.+|++|+|++|+|+++....|.+|.+|++|||++
T Consensus        14 ~~~l~~~~n~l~~-iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLAS-VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCc-cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            3689999999976 555554  7899999999999999899999999999999999999987777789999999999999


Q ss_pred             CCCCCCCCccccc-cCCCeeeccCCccc
Q 007628           98 NEFEGSVPSKLFD-KDLDAIFLNDNRFQ  124 (595)
Q Consensus        98 N~l~g~ip~~l~~-~~L~~L~L~~N~l~  124 (595)
                      |+|++.....+.. .+|++|+|++|.|.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            9998543332322 56666666666655

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.42  E-value=2.5e-15  Score=159.40  Aligned_cols=185  Identities=18%  Similarity=0.192  Sum_probs=98.2

Q ss_pred             CCCCcEEEccCCcCCCCCchhhcC-----CCCCCEEeccCCcCCCcCchhc-CCCCCCCEEEccCCCCCCCCCcccc---
Q 007628           39 LTDLAIFHINSNRFCGVVPSTFRR-----LKLLYEVDLSNNRFVGKFPKLF-LSLPKLKYLDLRFNEFEGSVPSKLF---  109 (595)
Q Consensus        39 L~~L~~L~Ls~N~l~~~lp~~~~~-----L~~L~~L~Ls~N~Lsg~lp~~l-~~L~~L~~LdLs~N~l~g~ip~~l~---  109 (595)
                      +.+|+.|+|++|+|+......|..     ..+|++|+|++|+|+......| ..|.+|++|||++|+|++.....+.   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            345667777777766543333322     2567777777776653322222 2345667777777776533222221   


Q ss_pred             ---ccCCCeeeccCCccccCCCcc----c-CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCC
Q 007628          110 ---DKDLDAIFLNDNRFQFGIPEN----L-GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGM  181 (595)
Q Consensus       110 ---~~~L~~L~L~~N~l~~~~p~~----l-~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~  181 (595)
                         ..+|+.|+|++|+++......    + .+..|++|+|++|.|+...          ++.           +.+.|..
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g----------~~~-----------L~~~L~~  209 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG----------LEL-----------LAAQLDR  209 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH----------HHH-----------HHHHGGG
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH----------HHH-----------HHHHHhc
Confidence               145677777777665321111    1 2345667777777665311          111           1123445


Q ss_pred             CccceEEeccCccccCC----CCCCcCCCCCccEEEccCCcCCCCCchhccCC---C--CCcEEE--cccccCC
Q 007628          182 LKNLTVFDVSFNHLQGS----LPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQL---P--NLQNFT--YSFNYFT  244 (595)
Q Consensus       182 L~~L~~LdLs~N~L~g~----lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l---~--~L~~L~--Ls~N~Ls  244 (595)
                      +.+|++|||++|.|++.    +.+.+..+.+|++|||++|.|++.-...|..+   .  .|+.+.  +..|.++
T Consensus       210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            56788888888888642    33344556788888888888875433334332   1  156665  5555554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.39  E-value=7.6e-13  Score=137.97  Aligned_cols=105  Identities=17%  Similarity=0.232  Sum_probs=88.1

Q ss_pred             eEEEccCC-CCCCCCchhhcCCCCCcEEEccC-CcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           19 ASIDLNHA-DIAGYLPPEIGRLTDLAIFHINS-NRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        19 ~~LdLs~n-~i~~~lp~~~~~L~~L~~L~Ls~-N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      ..++++++ +|++ ++. |..+.+|++|+|++ |+|+++....|++|.+|++|+|++|+|+++.+..|.+|.+|++|||+
T Consensus        11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688888 7887 677 99999999999996 99998888899999999999999999999888899999999999999


Q ss_pred             CCCCCCCCCccccccCCCeeeccCCcccc
Q 007628           97 FNEFEGSVPSKLFDKDLDAIFLNDNRFQF  125 (595)
Q Consensus        97 ~N~l~g~ip~~l~~~~L~~L~L~~N~l~~  125 (595)
                      +|+|++.....+....|+.|+|.+|.|..
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccC
Confidence            99998544433333558888888888764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.38  E-value=7.1e-15  Score=155.95  Aligned_cols=163  Identities=18%  Similarity=0.191  Sum_probs=110.1

Q ss_pred             CCCCCEEeccCCcCCCcCchh----cC-CCCCCCEEEccCCCCCCCCCccccc--cCCCeeeccCCccccCCCccc----
Q 007628           63 LKLLYEVDLSNNRFVGKFPKL----FL-SLPKLKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENL----  131 (595)
Q Consensus        63 L~~L~~L~Ls~N~Lsg~lp~~----l~-~L~~L~~LdLs~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l----  131 (595)
                      +.+|++|+|++|+|+......    +. +..+|++|||++|.|++.....++.  .+|+.|+|++|++.......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            477999999999998543333    33 2378999999999987432222322  467777777777653322222    


Q ss_pred             --CCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCC----CCCCcCC
Q 007628          132 --GNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGS----LPSSIGN  205 (595)
Q Consensus       132 --~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~----lP~~l~~  205 (595)
                        ....|++|+|++|.|+...          ++           .+...+..+.+|++|||++|.|++.    +.+.+..
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~----------~~-----------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~  209 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAG----------VA-----------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR  209 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHH----------HH-----------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG
T ss_pred             HhcCCccceeeCCCCCCChHH----------HH-----------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc
Confidence              1345666666666654211          11           1122345567899999999999743    3556777


Q ss_pred             CCCccEEEccCCcCCCC----CchhccCCCCCcEEEcccccCCCC
Q 007628          206 MKSLEQLNVAHNRFTGV----IPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       206 L~~L~~L~Ls~N~Lsg~----iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      +.+|++|+|++|.|++.    +...+..+.+|++|||++|.|++.
T Consensus       210 ~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          210 NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             CSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             CCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            88999999999999853    445566678999999999998754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.34  E-value=2.3e-12  Score=134.25  Aligned_cols=92  Identities=20%  Similarity=0.158  Sum_probs=83.5

Q ss_pred             CCCCCceeEEEccC-CCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628           12 SPSLRVVASIDLNH-ADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL   90 (595)
Q Consensus        12 ~~~l~~L~~LdLs~-n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L   90 (595)
                      +..+.+|+.|+|++ |+|+++....|++|.+|++|+|++|+|+++.+..|.+|.+|++|+|++|+|+++....|..+. |
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L  105 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L  105 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence            45677899999996 999999889999999999999999999999999999999999999999999977777777776 9


Q ss_pred             CEEEccCCCCCCCC
Q 007628           91 KYLDLRFNEFEGSV  104 (595)
Q Consensus        91 ~~LdLs~N~l~g~i  104 (595)
                      ++|+|.+|.|...-
T Consensus       106 ~~l~l~~N~~~c~c  119 (347)
T 2ifg_A          106 QELVLSGNPLHCSC  119 (347)
T ss_dssp             CEEECCSSCCCCCG
T ss_pred             eEEEeeCCCccCCC
Confidence            99999999998543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.18  E-value=9e-12  Score=131.51  Aligned_cols=59  Identities=20%  Similarity=0.255  Sum_probs=29.5

Q ss_pred             CccceEEeccCccccCC----CCCCcCCCCCccEEEccCCcCCCCCchhccC-CCCCcEEEccccc
Q 007628          182 LKNLTVFDVSFNHLQGS----LPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQ-LPNLQNFTYSFNY  242 (595)
Q Consensus       182 L~~L~~LdLs~N~L~g~----lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~-l~~L~~L~Ls~N~  242 (595)
                      |.+|++|||++|.|++.    +...+..+.+|++|+|++|.|++..-..|.. +  ...++|++|+
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            45566666666665532    2233344556666666666655433333332 2  2345555554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.10  E-value=3.4e-10  Score=120.37  Aligned_cols=203  Identities=13%  Similarity=0.101  Sum_probs=112.8

Q ss_pred             CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCcccc-c
Q 007628           32 LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLF-D  110 (595)
Q Consensus        32 lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~-~  110 (595)
                      ...+|.++.+|+.++|.++. ..+...+|.++.+|+.++|.+| ++.+...+|.++..|+.+++.++...  +....+ .
T Consensus       154 ~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~  229 (394)
T 4fs7_A          154 GDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSK  229 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT
T ss_pred             chhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhccc
Confidence            34567788888888886553 3355667788888888888766 44455567777777777777655432  111111 2


Q ss_pred             cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCC-------------------CCcCcccccccchhhHHHhhcccc
Q 007628          111 KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLG-------------------GCIPGSIGKMGKTLNEIILMNDNL  171 (595)
Q Consensus       111 ~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~-------------------~~ip~~l~~l~~~L~~L~Ls~N~l  171 (595)
                      ..|+.+.+..+......-.+.....++.+.+.++...                   ..+.+..+....+|+.+.+.++ +
T Consensus       230 ~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~-i  308 (394)
T 4fs7_A          230 TGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS-V  308 (394)
T ss_dssp             CCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEECTT-C
T ss_pred             CCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccccc-c
Confidence            4455555443221111111112233333333322111                   0111112222255666665443 4


Q ss_pred             CCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccc
Q 007628          172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN  241 (595)
Q Consensus       172 ~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N  241 (595)
                      ..+-..+|.+|.+|+.|+|.++ ++..-..+|.+|.+|+.++|..| ++..-..+|.+|.+|+.++|..|
T Consensus       309 ~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          309 KFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            4344456777778888877644 55444567777788888887666 55444567777778888877654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.07  E-value=8.8e-10  Score=117.11  Aligned_cols=78  Identities=13%  Similarity=0.139  Sum_probs=50.0

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCc---CCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNR---FCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~---l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .|+.+.|-++ |+.+-..+|.++.+|+.+.|.+|.   |+.+-..+|.++.+|+.+.+.++ ++.+...+|.++.+|+.+
T Consensus        65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i  142 (394)
T 4gt6_A           65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV  142 (394)
T ss_dssp             CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred             cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence            4777777643 666667788888888888887664   55445556666666666666544 332334455555666666


Q ss_pred             Ecc
Q 007628           94 DLR   96 (595)
Q Consensus        94 dLs   96 (595)
                      +|.
T Consensus       143 ~lp  145 (394)
T 4gt6_A          143 TIP  145 (394)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.04  E-value=6.9e-11  Score=124.71  Aligned_cols=66  Identities=17%  Similarity=0.276  Sum_probs=50.9

Q ss_pred             CCccceEEeccCccccCCCCCCc---CCCCCccEEEccCCcCCCC----CchhccCCCCCcEEEcccccCCCC
Q 007628          181 MLKNLTVFDVSFNHLQGSLPSSI---GNMKSLEQLNVAHNRFTGV----IPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       181 ~L~~L~~LdLs~N~L~g~lP~~l---~~L~~L~~L~Ls~N~Lsg~----iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      .+.+|++|+|++|.+.+.....+   ..+.+|++|+|++|+|++.    +...+..+.+|+.|+|++|.|+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            47899999999999874332233   3578999999999999864    333445678999999999988754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.95  E-value=2e-09  Score=114.33  Aligned_cols=201  Identities=13%  Similarity=0.041  Sum_probs=120.7

Q ss_pred             CCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc
Q 007628           31 YLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD  110 (595)
Q Consensus        31 ~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~  110 (595)
                      +...+|.++..++.+...+.  ..+...+|.++.+|+.++|.++. ..+...+|.++.+|+.++|.+| ++ .|....+.
T Consensus       131 i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~  205 (394)
T 4fs7_A          131 IGVEAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFA  205 (394)
T ss_dssp             ECTTTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTT
T ss_pred             ecceeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhc
Confidence            33455666654444443333  22445689999999999998764 3356678999999999999876 44 45555554


Q ss_pred             --cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC----------------
Q 007628          111 --KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT----------------  172 (595)
Q Consensus       111 --~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~----------------  172 (595)
                        ..|+.+.+..+.... ....+....|+.+.+.++. +......+..+ ..|+.+.+.++...                
T Consensus       206 ~~~~L~~i~~~~~~~~i-~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~-~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~  282 (394)
T 4fs7_A          206 ECILLENMEFPNSLYYL-GDFALSKTGVKNIIIPDSF-TELGKSVFYGC-TDLESISIQNNKLRIGGSLFYNCSGLKKVI  282 (394)
T ss_dssp             TCTTCCBCCCCTTCCEE-CTTTTTTCCCCEEEECTTC-CEECSSTTTTC-SSCCEEEECCTTCEECSCTTTTCTTCCEEE
T ss_pred             cccccceeecCCCceEe-ehhhcccCCCceEEECCCc-eeccccccccc-ccceeEEcCCCcceeeccccccccccceec
Confidence              678888877665431 2233445678877775432 21222222222 34444444333211                


Q ss_pred             ----CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccc
Q 007628          173 ----GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFN  241 (595)
Q Consensus       173 ----g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N  241 (595)
                          .+....|..+.+|+.++|.++ ++..-..+|.+|.+|+.|+|.++ ++..-..+|.+|.+|+.++|..|
T Consensus       283 ~~~~~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          283 YGSVIVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             ECSSEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             cCceeeccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence                011234556677777777654 44344566777888888888644 55344567778888888877655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.87  E-value=1.3e-08  Score=107.98  Aligned_cols=105  Identities=14%  Similarity=0.176  Sum_probs=76.2

Q ss_pred             CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEE
Q 007628          134 SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLN  213 (595)
Q Consensus       134 ~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~  213 (595)
                      ..|+.+.+.++.. .+....|.++ ..|+.+.+. +.+..+-..+|.+|.+|+.|+|..+ ++..-..+|.+|.+|++|.
T Consensus       265 ~~L~~i~lp~~~~-~I~~~aF~~c-~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          265 AYLASVKMPDSVV-SIGTGAFMNC-PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             SSCCEEECCTTCC-EECTTTTTTC-TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             ccccEEecccccc-eecCcccccc-cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence            4567777654432 2333444444 678888775 4455455678999999999999865 5545567899999999999


Q ss_pred             ccCCcCCCCCchhccCCCCCcEEEcccccC
Q 007628          214 VAHNRFTGVIPSSVCQLPNLQNFTYSFNYF  243 (595)
Q Consensus       214 Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~L  243 (595)
                      |..+ ++..-..+|.+|.+|+.++|.+|..
T Consensus       341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          341 IPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             ECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             ECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            9755 6645567899999999999998764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.84  E-value=2.6e-08  Score=104.82  Aligned_cols=103  Identities=12%  Similarity=0.102  Sum_probs=57.8

Q ss_pred             CceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEc
Q 007628          135 PVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNV  214 (595)
Q Consensus       135 ~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~L  214 (595)
                      .|+.+.+..+ ++......+..+ ..|+.+.+.++ ++.+-..+|.++.+|+.++|..+ ++..-..+|.+|.+|+.++|
T Consensus       218 ~l~~i~~~~~-~~~i~~~~f~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l  293 (379)
T 4h09_A          218 NLKKITITSG-VTTLGDGAFYGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM  293 (379)
T ss_dssp             SCSEEECCTT-CCEECTTTTTTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred             ccceeeeccc-eeEEccccccCC-ccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence            4555555432 222223333333 45666665543 33333455666777777777543 33344456677777777777


Q ss_pred             cCCcCCCCCchhccCCCCCcEEEcccc
Q 007628          215 AHNRFTGVIPSSVCQLPNLQNFTYSFN  241 (595)
Q Consensus       215 s~N~Lsg~iP~~l~~l~~L~~L~Ls~N  241 (595)
                      .+|.++..-...|.+|.+|+.++|..+
T Consensus       294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          294 DNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cccccceehhhhhcCCCCCCEEEcCcc
Confidence            776666444566777777777777543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.84  E-value=2.1e-08  Score=105.50  Aligned_cols=219  Identities=11%  Similarity=0.049  Sum_probs=115.9

Q ss_pred             CCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           15 LRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      ..+|+.+.|.+ +|+.+-..+|.+|.+|+.++|.++ |+.+-..+|.++ +|+.+.+.++ +..+-..+|.++ +|+.++
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~  119 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFE  119 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEE
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccccc
Confidence            34677777764 466666677888888888888654 665666777777 5777777654 443444556554 688888


Q ss_pred             ccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCC--------------------------
Q 007628           95 LRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLG--------------------------  147 (595)
Q Consensus        95 Ls~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~--------------------------  147 (595)
                      |.++..  .+....|. .+|+.+.+..+.-......+.....++.+.+..+...                          
T Consensus       120 lp~~~~--~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (379)
T 4h09_A          120 FPGATT--EIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT  197 (379)
T ss_dssp             CCTTCC--EECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred             CCCccc--cccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence            765422  22222222 3344443332211111111111122222222111100                          


Q ss_pred             ---------CCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCc
Q 007628          148 ---------GCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNR  218 (595)
Q Consensus       148 ---------~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~  218 (595)
                               ......+... ..|+.+.+..+ +..+...+|.++.+|+.++|..+ ++..-..+|.++.+|+.++|..+ 
T Consensus       198 ~~~~~~~~~~i~~~~f~~~-~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-  273 (379)
T 4h09_A          198 EFTIPSTVKTVTAYGFSYG-KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-  273 (379)
T ss_dssp             EEECCTTCCEECTTTTTTC-SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred             ccccccceeEEeecccccc-cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence                     0000111111 23333333222 22233455667778888888665 44344566777888888887654 


Q ss_pred             CCCCCchhccCCCCCcEEEcccccCC
Q 007628          219 FTGVIPSSVCQLPNLQNFTYSFNYFT  244 (595)
Q Consensus       219 Lsg~iP~~l~~l~~L~~L~Ls~N~Ls  244 (595)
                      ++..-...|.++.+|+.++|.+|.++
T Consensus       274 i~~i~~~aF~~c~~L~~i~l~~~~i~  299 (379)
T 4h09_A          274 VKTVPYLLCSGCSNLTKVVMDNSAIE  299 (379)
T ss_dssp             CSEECTTTTTTCTTCCEEEECCTTCC
T ss_pred             ceeccccccccccccccccccccccc
Confidence            44344456777888888888776654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.72  E-value=2.8e-09  Score=101.43  Aligned_cols=120  Identities=13%  Similarity=0.112  Sum_probs=80.4

Q ss_pred             CCCCCchhhcCCCCCcEEEccCC-cCCCC----CchhhcCCCCCCEEeccCCcCCCc----CchhcCCCCCCCEEEccCC
Q 007628           28 IAGYLPPEIGRLTDLAIFHINSN-RFCGV----VPSTFRRLKLLYEVDLSNNRFVGK----FPKLFLSLPKLKYLDLRFN   98 (595)
Q Consensus        28 i~~~lp~~~~~L~~L~~L~Ls~N-~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~----lp~~l~~L~~L~~LdLs~N   98 (595)
                      +...+...+.....|++|+|++| .|...    +...|....+|++|+|++|+|...    +...|....+|++|||++|
T Consensus        24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            33334556677888888888888 77643    445566778888888888888632    3445556678888888888


Q ss_pred             CCCCCCC----ccccc-cCCCeeec--cCCccccCCCccc-----CCCCceeEEeeccCCC
Q 007628           99 EFEGSVP----SKLFD-KDLDAIFL--NDNRFQFGIPENL-----GNSPVSVLVFANNDLG  147 (595)
Q Consensus        99 ~l~g~ip----~~l~~-~~L~~L~L--~~N~l~~~~p~~l-----~~~~L~~L~L~~N~l~  147 (595)
                      .|++..-    ..+.. ..|++|+|  ++|.+.......+     .+..|++|+|++|.|.
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            8874322    22222 57888888  7788764322222     2367899999998875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.62  E-value=1.6e-09  Score=103.20  Aligned_cols=110  Identities=14%  Similarity=0.099  Sum_probs=58.9

Q ss_pred             CCceeEEEccCC-CCCCC----CchhhcCCCCCcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCCCc----Cc
Q 007628           15 LRVVASIDLNHA-DIAGY----LPPEIGRLTDLAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFVGK----FP   81 (595)
Q Consensus        15 l~~L~~LdLs~n-~i~~~----lp~~~~~L~~L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~----lp   81 (595)
                      ...|+.|+|++| +|...    +.+.+....+|++|+|++|+|.+.    +.+.|....+|++|+|++|+|...    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            345666666666 55432    233344556666666666666542    233344556666666666666532    33


Q ss_pred             hhcCCCCCCCEEEc--cCCCCCCCCCccccc-----cCCCeeeccCCccc
Q 007628           82 KLFLSLPKLKYLDL--RFNEFEGSVPSKLFD-----KDLDAIFLNDNRFQ  124 (595)
Q Consensus        82 ~~l~~L~~L~~LdL--s~N~l~g~ip~~l~~-----~~L~~L~L~~N~l~  124 (595)
                      ..+....+|++|||  ++|.|+...-..+..     ..|++|+|++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            44555566666666  556665322211111     45666666666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.42  E-value=4.3e-08  Score=98.82  Aligned_cols=40  Identities=33%  Similarity=0.496  Sum_probs=18.6

Q ss_pred             CCCCCCEEeccCCcCCC--cCchhcCCCCCCCEEEccCCCCC
Q 007628           62 RLKLLYEVDLSNNRFVG--KFPKLFLSLPKLKYLDLRFNEFE  101 (595)
Q Consensus        62 ~L~~L~~L~Ls~N~Lsg--~lp~~l~~L~~L~~LdLs~N~l~  101 (595)
                      +|.+|+.|+|++|+|++  .++..+..|.+|++|||++|+|+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~  209 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  209 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence            34445555555555544  22233344445555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.40  E-value=1.6e-07  Score=94.55  Aligned_cols=83  Identities=19%  Similarity=0.179  Sum_probs=62.9

Q ss_pred             EEccCCCCC---CCCchhhcCCCCCcEEEccCCcCCC--CCchhhcCCCCCCEEeccCCcCCCcCchhcCCCC--CCCEE
Q 007628           21 IDLNHADIA---GYLPPEIGRLTDLAIFHINSNRFCG--VVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLP--KLKYL   93 (595)
Q Consensus        21 LdLs~n~i~---~~lp~~~~~L~~L~~L~Ls~N~l~~--~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~--~L~~L   93 (595)
                      |+++.|.+.   ..+.....++.+|+.|+|++|+|++  .+...+..|.+|+.|+|++|+|++.  ..+..|.  +|++|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            566666432   2222233568899999999999998  3457788999999999999999975  3344444  99999


Q ss_pred             EccCCCCCCCCC
Q 007628           94 DLRFNEFEGSVP  105 (595)
Q Consensus        94 dLs~N~l~g~ip  105 (595)
                      +|++|.|.+.++
T Consensus       226 ~L~~Npl~~~~~  237 (267)
T 3rw6_A          226 WLDGNSLCDTFR  237 (267)
T ss_dssp             ECTTSTTGGGCS
T ss_pred             EccCCcCccccC
Confidence            999999987665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=7.7e-07  Score=83.85  Aligned_cols=83  Identities=16%  Similarity=0.088  Sum_probs=49.3

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCc-CCCCCchhhcCC----CCCCEEeccCCc-CCCcCchhcCCCCCC
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNR-FCGVVPSTFRRL----KLLYEVDLSNNR-FVGKFPKLFLSLPKL   90 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~-l~~~lp~~~~~L----~~L~~L~Ls~N~-Lsg~lp~~l~~L~~L   90 (595)
                      .|+.|||+++.|+..--..+.+|.+|+.|+|++|. |++.--..|..+    .+|++|+|++|. |+..--..|.+|++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            46777777776665544556666677777777764 554444445543    256777776653 553333445566667


Q ss_pred             CEEEccCCC
Q 007628           91 KYLDLRFNE   99 (595)
Q Consensus        91 ~~LdLs~N~   99 (595)
                      ++|+|+++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            777776653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.95  E-value=2.6e-06  Score=81.62  Aligned_cols=114  Identities=15%  Similarity=0.130  Sum_probs=72.5

Q ss_pred             hhhcCCCCCcEEEccCC-cCCCC----CchhhcCCCCCCEEeccCCcCCC----cCchhcCCCCCCCEEEccCCCCCCCC
Q 007628           34 PEIGRLTDLAIFHINSN-RFCGV----VPSTFRRLKLLYEVDLSNNRFVG----KFPKLFLSLPKLKYLDLRFNEFEGSV  104 (595)
Q Consensus        34 ~~~~~L~~L~~L~Ls~N-~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg----~lp~~l~~L~~L~~LdLs~N~l~g~i  104 (595)
                      ..+.+-..|++|+|++| +|.+.    +-+.|...+.|+.|+|++|+|..    .+-+.|..-+.|++|||++|.|++..
T Consensus        35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            33455667888888875 76542    45566777888888888888873    23445556677888888888887543


Q ss_pred             Cccccc-----cCCCeeeccCCcc---ccC----CCccc-CCCCceeEEeeccCCC
Q 007628          105 PSKLFD-----KDLDAIFLNDNRF---QFG----IPENL-GNSPVSVLVFANNDLG  147 (595)
Q Consensus       105 p~~l~~-----~~L~~L~L~~N~l---~~~----~p~~l-~~~~L~~L~L~~N~l~  147 (595)
                      -..+..     ..|+.|+|++|+.   ...    +.+.+ .+..|+.|+|..|.+.
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            333322     4688888875432   211    11222 2367888888777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.80  E-value=1.3e-06  Score=83.75  Aligned_cols=42  Identities=7%  Similarity=0.091  Sum_probs=18.0

Q ss_pred             hcCCCCCcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCC
Q 007628           36 IGRLTDLAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFV   77 (595)
Q Consensus        36 ~~~L~~L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Ls   77 (595)
                      +..-+.|+.|+|++|+|.+.    +.+.|...+.|++|+|++|+|.
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            33334444444444444421    2223333444444444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.68  E-value=1.1e-05  Score=75.97  Aligned_cols=62  Identities=5%  Similarity=0.039  Sum_probs=45.9

Q ss_pred             CCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCc-CCCcCchhcCCC----CCCCEEEccCCC-CC
Q 007628           40 TDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR-FVGKFPKLFLSL----PKLKYLDLRFNE-FE  101 (595)
Q Consensus        40 ~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~-Lsg~lp~~l~~L----~~L~~LdLs~N~-l~  101 (595)
                      -+|+.|||+++.|++.--..|.+|.+|+.|+|++|. |+..--..|..+    .+|++|||++|. |+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            468899999998887766778888999999998885 664333445554    368888888874 65

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.33  E-value=0.00021  Score=63.71  Aligned_cols=57  Identities=23%  Similarity=0.308  Sum_probs=37.1

Q ss_pred             EEeccCcccc-CCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCC
Q 007628          187 VFDVSFNHLQ-GSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTG  245 (595)
Q Consensus       187 ~LdLs~N~L~-g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg  245 (595)
                      .+|.++++|+ ..++..|-  .+|++|+|++|+|+.+-.+.|..+.+|++|+|++|.|..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            5667777665 34554432  356777777777776555667777777777777777654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.13  E-value=0.00033  Score=62.36  Aligned_cols=55  Identities=18%  Similarity=0.317  Sum_probs=26.1

Q ss_pred             EEEccCCCCC-CCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcC
Q 007628           20 SIDLNHADIA-GYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRF   76 (595)
Q Consensus        20 ~LdLs~n~i~-~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~L   76 (595)
                      ++|.++++++ ..++..|.  .+|++|+|++|+|+.+-...|..|.+|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            5666666655 12332221  2345555555555544444444455555555544443

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=89.16  E-value=0.66  Score=38.83  Aligned_cols=48  Identities=13%  Similarity=0.086  Sum_probs=28.9

Q ss_pred             CCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCC
Q 007628           26 ADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNN   74 (595)
Q Consensus        26 n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N   74 (595)
                      ..|+.+...+|.++.+|+.+.|-.+ ++.+-..+|.+|.+|+.+.|.+.
T Consensus         6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence            3455555566666667776666554 33345556666666666666554

>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A

Probab=88.70  E-value=0.32  Score=46.13  Aligned_cols=10  Identities=10%  Similarity=0.122  Sum_probs=4.1

Q ss_pred             EEcccccCCC
Q 007628          236 FTYSFNYFTG  245 (595)
Q Consensus       236 L~Ls~N~Lsg  245 (595)
                      .++++..|.|
T Consensus       186 ~~l~~~~l~g  195 (216)
T 3pss_A          186 LDLRRVNLDG  195 (216)
T ss_dssp             CCTTTSCCTT
T ss_pred             cccccCcccC
Confidence            3344444444

>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A

Probab=87.27  E-value=0.34  Score=45.97  Aligned_cols=11  Identities=18%  Similarity=0.404  Sum_probs=4.8

Q ss_pred             EEccCCcCCCC
Q 007628          212 LNVAHNRFTGV  222 (595)
Q Consensus       212 L~Ls~N~Lsg~  222 (595)
                      .+|.+..|.|.
T Consensus       180 a~l~~a~l~ga  190 (201)
T 2j8k_A          180 ANLEDANLEGT  190 (201)
T ss_dssp             CBCTTCBCTTS
T ss_pred             CCcCCCEECcC
Confidence            34444444443

>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A

Probab=85.82  E-value=0.5  Score=44.21  Aligned_cols=12  Identities=0%  Similarity=-0.189  Sum_probs=5.2

Q ss_pred             CCEEEccCCCCC
Q 007628           90 LKYLDLRFNEFE  101 (595)
Q Consensus        90 L~~LdLs~N~l~  101 (595)
                      |+..++.+++|.
T Consensus        71 l~~~~f~~~~l~   82 (200)
T 2xt2_A           71 FMEVRFVDCKML   82 (200)
T ss_dssp             EEEEEEESCBCT
T ss_pred             eeeeEEEcCEec
Confidence            344444444444

>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}

Probab=83.76  E-value=1.5  Score=41.60  Aligned_cols=55  Identities=16%  Similarity=0.100  Sum_probs=25.7

Q ss_pred             cceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          184 NLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       184 ~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      +|+..++.++.|.+..   |. -.+|+..++.++.|++..   |.+ .+|+..+|++..|++.
T Consensus       131 ~l~~~~f~~~~l~~a~---f~-~a~L~~a~f~~~~L~~a~---f~~-a~l~~~~l~~a~l~~~  185 (214)
T 2w7z_A          131 NFNLVHFNQTRLVESE---FF-EVTWXXLLLEACDLTESN---WLN-TSLXGLDFSQNTFERL  185 (214)
T ss_dssp             EEEEEEEESCBCTTCB---CT-TCEEEEEEEESCBCTTCB---CTT-CCCTTCBCTTSBCSCC
T ss_pred             ccCceEEEecccCCCC---cc-CCEEEEEEEEecccccCE---ecC-CeeccCCcccCCcCce
Confidence            3555555555554321   11 134555666666655421   211 2355555555555543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=82.67  E-value=2.2  Score=35.61  Aligned_cols=48  Identities=13%  Similarity=0.014  Sum_probs=33.1

Q ss_pred             ccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCc
Q 007628          170 NLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNR  218 (595)
Q Consensus       170 ~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~  218 (595)
                      .++.+-..+|.+|.+|+.+.|-.+- +..-..+|.+|.+|+.+.|....
T Consensus         7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~~   54 (100)
T 2lz0_A            7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGED   54 (100)
T ss_dssp             CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCSC
T ss_pred             ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCCC
Confidence            3444555677888888888887653 33556678888888888887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	595
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-17
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	8e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 88.1 bits (217), Expect = 2e-19
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 15/205 (7%)

Query: 37  GRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR 96
            +LT+L      +N+   + P        L E+ L+ N+          SL  L  LDL 
Sbjct: 194 AKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 97  FNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGK 156
            N+     P     K L  + L  N+    I    G + ++ L    N L    P S  K
Sbjct: 250 NNQISNLAPLSGLTK-LTELKLGANQI-SNISPLAGLTALTNLELNENQLEDISPISNLK 307

Query: 157 MGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAH 216
               L    L  +N++   P  +  L  L     + N +     SS+ N+ ++  L+  H
Sbjct: 308 NLTYLT---LYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360

Query: 217 NRFTGVIPSSVCQLPNLQNFTYSFN 241
           N+ + + P  +  L  +     +  
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 81.2 bits (199), Expect = 5e-17
 Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 15/213 (7%)

Query: 36  IGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL 95
           +  LT L    I+SN+      S   +L  L  +  +NN+     P   L    L  L L
Sbjct: 171 LANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSL 226

Query: 96  RFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIG 155
             N+ +  + +     +L  + L +N+    +    G + ++ L    N +    P    
Sbjct: 227 NGNQLKD-IGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQISNISP---- 280

Query: 156 KMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVA 215
             G T    + +N+N        I  LKNLT   + FN++    P  + ++  L++L  A
Sbjct: 281 LAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFA 337

Query: 216 HNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248
           +N+ +    SS+  L N+   +   N  +   P
Sbjct: 338 NNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.7 bits (112), Expect = 3e-06
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 6/78 (7%)

Query: 166 LMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPS 225
           L   N+T  +      L  +T        ++ S+   +  + +L Q+N ++N+ T + P 
Sbjct: 29  LGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSNNQLTDITP- 83

Query: 226 SVCQLPNLQNFTYSFNYF 243
            +  L  L +   + N  
Sbjct: 84  -LKNLTKLVDILMNNNQI 100

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 8   SPFNS-PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLL 66
           SP +S   L+    +   +  ++      +  LT++       N+   + P     L  +
Sbjct: 323 SPVSSLTKLQR---LFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRI 375

Query: 67  YEVDLSNN 74
            ++ L++ 
Sbjct: 376 TQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.5 bits (205), Expect = 3e-18
 Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 9/221 (4%)

Query: 32  LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK 91
           +P ++    D A+  + +N+   +    F+ LK L+ + L NN+     P  F  L KL+
Sbjct: 25  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 92  YLDLRFNEFEGSVPSKL--FDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGC 149
            L L  N+ +  +P K+    ++L        + +  +   L    V  L        G 
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 150 IPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSL 209
             G+   M K L+ I + + N+T  +P   G+  +LT   +  N +     +S+  + +L
Sbjct: 142 ENGAFQGM-KKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 210 EQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSC 250
            +L ++ N  + V   S+   P+L+    + N     P   
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.9 bits (154), Expect = 1e-11
 Identities = 38/252 (15%), Positives = 80/252 (31%), Gaps = 34/252 (13%)

Query: 14  SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRF--------------------- 52
           +L+ + ++ L +  I+   P     L  L   +++ N+                      
Sbjct: 53  NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 112

Query: 53  CGVVPSTFRRLKLLYEVDLSN--NRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD 110
             V  S F  L  +  V+L     +  G     F  + KL Y+ +       ++P  L  
Sbjct: 113 TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPP 171

Query: 111 KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDN 170
             L  + L+ N+       +L        +  + +    +          L E+ L N+ 
Sbjct: 172 S-LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230

Query: 171 LTGCLPPQIGMLKNLTVFDVSFNHLQG------SLPSSIGNMKSLEQLNVAHN--RFTGV 222
           L    P  +   K + V  +  N++          P       S   +++  N  ++  +
Sbjct: 231 LVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289

Query: 223 IPSSVCQLPNLQ 234
            PS+   +    
Sbjct: 290 QPSTFRCVYVRA 301

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.1 bits (201), Expect = 1e-17
 Identities = 56/279 (20%), Positives = 93/279 (33%), Gaps = 34/279 (12%)

Query: 2   GVFCARSPFNSPSLRVVASIDLNHADIAGY--LPPEIGRLTDLAIFHINS---------- 49
           GV C            V ++DL+  ++     +P  +  L  L   +I            
Sbjct: 40  GVLCD----TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95

Query: 50  ---------------NRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94
                              G +P    ++K L  +D S N   G  P    SLP L  + 
Sbjct: 96  AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 95  LRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSI 154
              N   G++P            +  +R +         + +++     +        S+
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 155 GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNV 214
                   + I +  N       ++G+ KNL   D+  N + G+LP  +  +K L  LNV
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 215 AHNRFTGVIPSSVCQLPNLQNFTYSFNYF-TGEP-PSCT 251
           + N   G IP     L       Y+ N    G P P+CT
Sbjct: 276 SFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT 313

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (146), Expect = 8e-11
 Identities = 37/271 (13%), Positives = 70/271 (25%), Gaps = 45/271 (16%)

Query: 20  SIDLNHADIAGYLPPEIGRLTD--LAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFV 77
           ++DL   ++    P   GRL    +  F    +     +   F   ++ + +DLSN+   
Sbjct: 4   TLDLTGKNL---HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQH-MDLSNSVIE 59

Query: 78  GK-FPKLFLSLPKLKYLDLRFNEFEGSVPS---------KLFDKDLDAIFLNDNRFQFGI 127
                 +     KL+ L L        + +         +L             +     
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 128 PENLGNS-----------------PVSVLVFANNDLGGCIPGSIGKMGKTLNEI------ 164
              L                              +L G           TL         
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 165 --ILMNDNLTGCLPPQIGMLKNLTVFDVSF-NHLQGSLPSSIGNMKSLEQLNVAHNRFTG 221
             +  +  L      +   L  L    +S    +       +G + +L+ L V      G
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 222 VIPSSVCQLPNLQNFTYSFNYFTGEPPSCTA 252
            +      LP+LQ    + ++FT        
Sbjct: 240 TLQLLKEALPHLQ---INCSHFTTIARPTIG 267

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 5/190 (2%)

Query: 33  PPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY 92
           P     L  L   H++      + P  FR L  L  + L +N         F  L  L +
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157

Query: 93  LDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIP 151
           L L  N               LD + L+ NR     P    +    + ++   +    +P
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 152 GSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQ 211
                  + L  + L ++    C      +   L  F  S + +  SLP  +        
Sbjct: 218 TEALAPLRALQYLRLNDNPWV-CDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDL--- 273

Query: 212 LNVAHNRFTG 221
             +A N   G
Sbjct: 274 KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 6e-08
 Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 2/129 (1%)

Query: 21  IDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKF 80
           + L+   I+         L  L    ++ NR   V P  FR L  L  + L  N      
Sbjct: 158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP 217

Query: 81  PKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLV 140
            +    L  L+YL L  N +     ++     L     + +     +P+ L    +  L 
Sbjct: 218 TEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRL- 276

Query: 141 FANNDLGGC 149
            A NDL GC
Sbjct: 277 -AANDLQGC 284

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 23/165 (13%), Positives = 46/165 (27%), Gaps = 2/165 (1%)

Query: 88  PKLKYLDLRFNEFEGSVPSKL--FDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANND 145
              + + L  N       +              ++   +       G + +  L  ++N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 146 LGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGN 205
               +  +       L+ + L    L    P     L  L    +  N LQ     +  +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 206 MKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSC 250
           + +L  L +  NR + V   +   L +L       N      P  
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 3e-08
 Identities = 33/209 (15%), Positives = 67/209 (32%), Gaps = 6/209 (2%)

Query: 35  EIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD 94
           E+ ++      + +      + P   +   +L    LS N          +   +L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKDTTIL---HLSENLLYTFSLATLMPYTRLTQLN 61

Query: 95  LRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSI 154
           L   E             L  + L+ N+ Q           ++VL  + N L     G++
Sbjct: 62  LDRAELTKLQVDGTL-PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 155 GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNV 214
             +G+     +  N+  T   P  +     L    ++ N+L       +  +++L+ L +
Sbjct: 121 RGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179

Query: 215 AHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243
             N     IP        L       N +
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 163 EIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV 222
           E+     NLT  LPP +   K+ T+  +S N L     +++     L QLN+     T  
Sbjct: 14  EVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-- 68

Query: 223 IPSSVCQLPNLQNFTYSFNYFTGEPPSC 250
                  LP L     S N     P   
Sbjct: 69  KLQVDGTLPVLGTLDLSHNQLQSLPLLG 96

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 45  FHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSV 104
            ++  N    + P        L ++ L+NN        L   L  L  L L+ N    ++
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187

Query: 105 PSKLFD-KDLDAIFLNDNRFQ 124
           P   F    L   FL+ N + 
Sbjct: 188 PKGFFGSHLLPFAFLHGNPWL 208

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 20/123 (16%), Positives = 38/123 (30%), Gaps = 11/123 (8%)

Query: 118 LNDNRFQFGIPENLGNSP-VSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLP 176
           L        +  +L     V+ L  ++N L    P     +       +L   +      
Sbjct: 5   LAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALENV 58

Query: 177 PQIGMLKNLTVFDVSFNHLQG-SLPSSIGNMKSLEQLNVAHNRFT---GVIPSSVCQLPN 232
             +  L  L    +  N LQ  +    + +   L  LN+  N      G+       LP+
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 118

Query: 233 LQN 235
           + +
Sbjct: 119 VSS 121

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 6e-07
 Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 29/112 (25%)

Query: 159 KTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSL--------- 209
           + L+   L + +LT      +  L  +T  D+S N L+   P ++  ++ L         
Sbjct: 1   RVLH---LAHKDLTV--LCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNA 54

Query: 210 -------------EQLNVAHNRFTGV-IPSSVCQLPNLQNFTYSFNYFTGEP 247
                        ++L + +NR         +   P L       N    E 
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 17/146 (11%), Positives = 35/146 (23%), Gaps = 30/146 (20%)

Query: 70  DLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPE 129
            L++             L  + +LDL  N      P+ L       +    +     +  
Sbjct: 4   HLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG 60

Query: 130 NLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD 189
                 +  L+  NN L                                +     L + +
Sbjct: 61  VANLPRLQELLLCNNRLQQSAA------------------------IQPLVSCPRLVLLN 96

Query: 190 VSFNHL---QGSLPSSIGNMKSLEQL 212
           +  N L   +G        + S+  +
Sbjct: 97  LQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 26/113 (23%)

Query: 21  IDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLY------------- 67
           + L H D+       + +L  +    ++ NR   + P+      L               
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 68  --------EVDLSNNRFVG-KFPKLFLSLPKLKYLDLRFNEFEG--SVPSKLF 109
                   E+ L NNR       +  +S P+L  L+L+ N       +  +L 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 3e-07
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 161 LNEIILMNDNLT-GCLPPQIGMLKNLTVFDVSFNHLQG----SLPSSIGNMKSLEQLNVA 215
           +  + +  + L+       + +L+   V  +    L       + S++    +L +LN+ 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 216 HNRFTGVIPSSVCQL 230
            N    V    V Q 
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 5e-07
 Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 5/76 (6%)

Query: 184 NLTVFDVSFNHLQGS-LPSSIGNMKSLEQLNVAHNRFTGV----IPSSVCQLPNLQNFTY 238
           ++   D+    L  +     +  ++  + + +     T      I S++   P L     
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 239 SFNYFTGEPPSCTAAA 254
             N        C    
Sbjct: 63  RSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 1e-06
 Identities = 13/89 (14%), Positives = 31/89 (34%), Gaps = 12/89 (13%)

Query: 173 GCLPPQIGMLKN---LTVFDVSFNHLQG----SLPSSIGNMKSLEQLNVAHNRFTGVIPS 225
           G      G+ +    L V  ++   +      SL +++    SL +L++++N        
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 226 SVCQ-----LPNLQNFTYSFNYFTGEPPS 249
            + +        L+       Y++ E   
Sbjct: 416 QLVESVRQPGCLLEQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (111), Expect = 3e-06
 Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 156 KMGKTLNEIILMNDNLTG----CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIG-----NM 206
           + G  L  + L + +++      L   +    +L   D+S N L  +    +        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 207 KSLEQLNVAHNRFTGVIPSSVCQL----PNLQNFT 237
             LEQL +    ++  +   +  L    P+L+  +
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 1e-05
 Identities = 16/95 (16%), Positives = 24/95 (25%), Gaps = 22/95 (23%)

Query: 20  SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRF--- 76
           S+D+   DI          L+D     +               L+    V L +      
Sbjct: 1   SLDIQSLDIQCE------ELSDARWAEL------------LPLLQQCQVVRLDDCGLTEA 42

Query: 77  -VGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD 110
                       P L  L+LR NE        +  
Sbjct: 43  RCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 77

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 3e-05
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 57  PSTFRRLKLLYEVDLSNNRF----VGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-- 110
               +   +L  + L++               L+   L+ LDL  N    +   +L +  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 111 ----KDLDAIFLNDNRFQFGIPENL 131
                 L+ + L D  +   + + L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 9/76 (11%)

Query: 42  LAIFHINSNRF----CGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLS-----LPKLKY 92
           L +  +         C  + +T      L E+DLSNN          +         L+ 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 93  LDLRFNEFEGSVPSKL 108
           L L    +   +  +L
Sbjct: 431 LVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 10/87 (11%)

Query: 20 SIDLNHADIAGYLPPEI-GRLTDLAIFHINSNRF----CGVVPSTFRRLKLLYEVDLSNN 74
          S+D+   +++     E+   L    +  ++        C  + S  R    L E++L +N
Sbjct: 6  SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN 65

Query: 75 RFVGKFPK-----LFLSLPKLKYLDLR 96
                       L     K++ L L+
Sbjct: 66 ELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 9/110 (8%)

Query: 143 NNDLGGCIPGSIGKMGKTLNEIILMNDNLT--GC--LPPQIGMLKNLTVFDVSFNHLQGS 198
             +L       +  + +    + L +  LT   C  +   + +   L   ++  N L   
Sbjct: 11  CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV 70

Query: 199 LPSSIG-----NMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYF 243
               +          +++L++ +   TG     +             +  
Sbjct: 71  GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 34/230 (14%), Positives = 69/230 (30%), Gaps = 17/230 (7%)

Query: 10  FNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEV 69
           F  P+L     I    +++   +      L  +            +     + L  L  +
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGL 68

Query: 70  DLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPE 129
           +L +N+     P   L+      L     +   ++      K LD               
Sbjct: 69  ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 130 NLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD 189
           +     + VL    N +    P     +    N   L   N        +  L  LT   
Sbjct: 129 S----NLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLK 179

Query: 190 VSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYS 239
              N +    P  + ++ +L ++++ +N+ + V P  +    NL   T +
Sbjct: 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 6e-05
 Identities = 30/210 (14%), Positives = 58/210 (27%), Gaps = 15/210 (7%)

Query: 39  LTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN 98
           L +        +     V  T   L  +  +             +   L  L  L+L+ N
Sbjct: 18  LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEGVQ-YLNNLIGLELKDN 73

Query: 99  EFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMG 158
           +     P K   K               +    G   +  L   +  +    P +     
Sbjct: 74  QITDLAPLKNLTKI--TELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 159 KTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNR 218
           + L   +         +     +     +  +S  + Q S  + + N+  L  L    N+
Sbjct: 132 QVLYLDL-------NQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 219 FTGVIPSSVCQLPNLQNFTYSFNYFTGEPP 248
            + + P  +  LPNL       N  +   P
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQISDVSP 212

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 18/136 (13%), Positives = 37/136 (27%), Gaps = 6/136 (4%)

Query: 58  STFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIF 117
           + +       E+DL   +       L  +L +   +D   NE    +      + L  + 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLL 69

Query: 118 LNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPP 177
           +N+NR            P    +   N+    +              + +  N       
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129

Query: 178 Q----IGMLKNLTVFD 189
                I  +  + V D
Sbjct: 130 YRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 6/74 (8%), Positives = 18/74 (24%), Gaps = 3/74 (4%)

Query: 177 PQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNF 236
            Q          D+    +   + +    +   + ++ + N    +       L  L+  
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTL 68

Query: 237 TYSFNYFTGEPPSC 250
             + N         
Sbjct: 69  LVNNNRICRIGEGL 82

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 8/84 (9%)

Query: 166 LMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPS 225
              +  +  +     +  +L   +VS N L   LP+       LE+L  + N     +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLAE-VPE 321

Query: 226 SVCQLPNLQNFTYSFNYFTGEPPS 249
                 NL+     +N     P  
Sbjct: 322 L---PQNLKQLHVEYNPLREFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 8e-05
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 8/63 (12%)

Query: 183 KNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY 242
           +     +++   L  SLP    +   LE L  + N  T  +P       +L++     N 
Sbjct: 38  RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPEL---PQSLKSLLVDNNN 89

Query: 243 FTG 245
              
Sbjct: 90  LKA 92

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 9/91 (9%)

Query: 45  FHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSV 104
                N     + S       L E+++SNN+ +    +L    P+L+ L   FN     V
Sbjct: 265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLA-EV 319

Query: 105 PSKLFDKDLDAIFLNDNRFQF--GIPENLGN 133
           P     ++L  + +  N  +    IPE++ +
Sbjct: 320 PELP--QNLKQLHVEYNPLREFPDIPESVED 348

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.8 bits (109), Expect = 5e-06
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 12/79 (15%)

Query: 166 LMNDNLTG----CLPPQIGMLKN--LTVFDVSFNHLQG----SLPSSI-GNMKSLEQLNV 214
           L +  L+      +      L+N  L    + +N ++     +L + I   M  L  L +
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 215 AHNRFTGVIPSSVCQLPNL 233
             NRF+      V ++  +
Sbjct: 310 NGNRFSE-EDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 15/107 (14%), Positives = 33/107 (30%), Gaps = 15/107 (14%)

Query: 158 GKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG----SLPSSIGNMKSLEQLN 213
           GK+L    +  ++    +   +    ++    +S N +       L  +I + K LE   
Sbjct: 7   GKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 214 VAHNR----------FTGVIPSSVCQLPNLQNFTYSFNYFTGEPPSC 250
            +                ++  ++ + P L     S N F       
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP 112

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.1 bits (102), Expect = 3e-05
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 7/50 (14%)

Query: 66  LYEVDLSNNRFVGKFPK-----LFLSLPKLKYLDLRFNEF--EGSVPSKL 108
           L  + L  N       +     +   +P L +L+L  N F  E  V  ++
Sbjct: 275 LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEI 324

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 2e-04
 Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 11/70 (15%)

Query: 193 NHLQGSLPSSIGNM------KSLEQLNVAHNRFTGVIPSSVCQ-----LPNLQNFTYSFN 241
             L     +++ +         L+ L + +N        ++       +P+L     + N
Sbjct: 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312

Query: 242 YFTGEPPSCT 251
            F+ E     
Sbjct: 313 RFSEEDDVVD 322

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 84  FLSLPKLKYLDLRFNEFEGSVPSKLFD------KDLDAIFLNDNRF 123
            L    L+ L L++NE E      L         DL  + LN NRF
Sbjct: 269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 12/93 (12%)

Query: 11  NSPSLRVVASIDLNHADIAGY--LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYE 68
           N P L    S++L++  +     +   + +  +L I +++ N           +   L E
Sbjct: 63  NIPELL---SLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 119

Query: 69  VDLSNNRFVGKFP-------KLFLSLPKLKYLD 94
           + L  N     F         +    PKL  LD
Sbjct: 120 LWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 10/104 (9%)

Query: 33  PPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK--FPKLFLSLPKL 90
            P++       + +  S+     +      +  L  ++LSNNR         +    P L
Sbjct: 35  DPDLVAQNIDVVLNRRSSMA-ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNL 93

Query: 91  KYLDLRFNEF----EGSVPSKLFDKDLDAIFLNDNRFQFGIPEN 130
           K L+L  NE     E      L  ++L    L+ N       + 
Sbjct: 94  KILNLSGNELKSERELDKIKGLKLEELW---LDGNSLSDTFRDQ 134

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 21/196 (10%), Positives = 57/196 (29%), Gaps = 15/196 (7%)

Query: 39  LTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN 98
             +    ++        V  T   L  + ++  +N+            LP +  L L  N
Sbjct: 23  FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78

Query: 99  EFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMG 158
           +            +L  +             +       +   +    G      +  + 
Sbjct: 79  KLTDIK----PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLP 134

Query: 159 KTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNR 218
           +  +  +  N      +  ++  L  L++ D   + +       +  +  L+ L ++ N 
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-----VPLAGLTKLQNLYLSKNH 189

Query: 219 FTGVIPSSVCQLPNLQ 234
            + +   ++  L NL 
Sbjct: 190 ISDL--RALAGLKNLD 203

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 8e-05
 Identities = 27/197 (13%), Positives = 59/197 (29%), Gaps = 15/197 (7%)

Query: 39  LTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN 98
           L +     +        V  +   L  +  +         K       L  L  ++   N
Sbjct: 17  LAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNN 72

Query: 99  EFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMG 158
           +             L  +    +               ++       L       I  + 
Sbjct: 73  QLTD-------ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 125

Query: 159 KTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNR 218
              N   L   + T      +  L +L   + S N +    P  + N+ +LE+L+++ N+
Sbjct: 126 NLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNK 183

Query: 219 FTGVIPSSVCQLPNLQN 235
            + +  S + +L NL++
Sbjct: 184 VSDI--SVLAKLTNLES 198

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 11/76 (14%), Positives = 20/76 (26%)

Query: 21  IDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKF 80
           + LN   I               +   ++N    +    F        +D+S  R     
Sbjct: 158 LWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 217

Query: 81  PKLFLSLPKLKYLDLR 96
                +L KL+     
Sbjct: 218 SYGLENLKKLRARSTY 233

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	595
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.85
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.78
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.77
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.65
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.63
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.54
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.35
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.39
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.22
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.91
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.71
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.58

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=5e-34  Score=292.78  Aligned_cols=259  Identities=25%  Similarity=0.409  Sum_probs=226.3

Q ss_pred             CceecccCCCCCCCCCceeEEEccCCCCCCC--CchhhcCCCCCcEEEccC-CcCCCCCchhhcCCCCCCEEeccCCcCC
Q 007628            1 MGVFCARSPFNSPSLRVVASIDLNHADIAGY--LPPEIGRLTDLAIFHINS-NRFCGVVPSTFRRLKLLYEVDLSNNRFV   77 (595)
Q Consensus         1 ~gv~C~~~~~~~~~l~~L~~LdLs~n~i~~~--lp~~~~~L~~L~~L~Ls~-N~l~~~lp~~~~~L~~L~~L~Ls~N~Ls   77 (595)
                      .||+|+...    ...+|+.|||+++++++.  ++.+|++|++|++|+|++ |+|+|.++.+|++|++|++|+|++|+|.
T Consensus        39 ~gv~C~~~~----~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~  114 (313)
T d1ogqa_          39 LGVLCDTDT----QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS  114 (313)
T ss_dssp             TTEEECCSS----SCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE
T ss_pred             CCeEEeCCC----CcEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccc
Confidence            499997542    335799999999999984  789999999999999997 8999999999999999999999999999


Q ss_pred             CcCchhcCCCCCCCEEEccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CC-ceeEEeeccCCCCCcCccc
Q 007628           78 GKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SP-VSVLVFANNDLGGCIPGSI  154 (595)
Q Consensus        78 g~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~-L~~L~L~~N~l~~~ip~~l  154 (595)
                      +.....+.++.+|++|++++|++.+.++..+.. ..|++++|++|++.+.+++.+.. .. ++.+++++|++++..+..+
T Consensus       115 ~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~  194 (313)
T d1ogqa_         115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             ccccccccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999887776 78999999999999998887765 33 5889999999999999888


Q ss_pred             ccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCc
Q 007628          155 GKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQ  234 (595)
Q Consensus       155 ~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~  234 (595)
                      ..+  .+..+++.+|.+.+.++..++.+.+|+.|++++|.+.+.++ .++.+.+|++|+|++|+|+|.++++|++|.+|+
T Consensus       195 ~~l--~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~  271 (313)
T d1ogqa_         195 ANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH  271 (313)
T ss_dssp             GGC--CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred             ccc--ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCC
Confidence            876  34578999999999999999999999999999999997765 688899999999999999999999999999999


Q ss_pred             EEEcccccCCCCCCccccccCCCCcccccCCC
Q 007628          235 NFTYSFNYFTGEPPSCTAAAGGGGRMMAARPA  266 (595)
Q Consensus       235 ~L~Ls~N~Lsg~~p~~~~~~~~~~~~~~~~~~  266 (595)
                      +|||++|+|+|.++............+.+|..
T Consensus       272 ~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             EEECCSSEEEEECCCSTTGGGSCGGGTCSSSE
T ss_pred             EEECcCCcccccCCCcccCCCCCHHHhCCCcc
Confidence            99999999999998654333333333444433

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=7.9e-32  Score=276.23  Aligned_cols=237  Identities=27%  Similarity=0.439  Sum_probs=217.4

Q ss_pred             CCCCCCceeEEEccC-CCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCC
Q 007628           11 NSPSLRVVASIDLNH-ADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPK   89 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~-n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~   89 (595)
                      .+.+|..|++|||++ |+++|.++.+|++|++|++|+|++|+|.+.....+.++.+|++|++++|++.+.++..|.++.+
T Consensus        71 ~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~  150 (313)
T d1ogqa_          71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             HHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcc
Confidence            456789999999997 8899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEccCCCCCCCCCccccc--cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhh
Q 007628           90 LKYLDLRFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILM  167 (595)
Q Consensus        90 L~~LdLs~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls  167 (595)
                      |++|+|++|++.|.++..+..  ..++.+++++|++++.....+....+.+|++.++.+.+.++..++.+ .+|+.|++.
T Consensus       151 L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~-~~l~~l~~~  229 (313)
T d1ogqa_         151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD-KNTQKIHLA  229 (313)
T ss_dssp             CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTT-SCCSEEECC
T ss_pred             cceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence            999999999999999888766  34588999999999999999888888899999999999999998888 789999999


Q ss_pred             ccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEccccc-CCCC
Q 007628          168 NDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNY-FTGE  246 (595)
Q Consensus       168 ~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~-Lsg~  246 (595)
                      +|.+.+.+. +++.+.+|++|||++|+|+|.++++|++|++|++|+|++|+|+|.++. +++|.+|+.|+|++|+ ++|.
T Consensus       230 ~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         230 KNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             SSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             ccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            999987765 688899999999999999999999999999999999999999999984 6889999999999997 6775


Q ss_pred             -CCcc
Q 007628          247 -PPSC  250 (595)
Q Consensus       247 -~p~~  250 (595)
                       ++.|
T Consensus       308 plp~c  312 (313)
T d1ogqa_         308 PLPAC  312 (313)
T ss_dssp             TSSCC
T ss_pred             CCCCC
Confidence             4544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.1e-26  Score=228.20  Aligned_cols=224  Identities=17%  Similarity=0.205  Sum_probs=185.2

Q ss_pred             eEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccC-
Q 007628           19 ASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRF-   97 (595)
Q Consensus        19 ~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~-   97 (595)
                      ..++.++++++. ++..+.  .++++|+|++|+|+.+...+|.++++|++|++++|+|.++....+.++..++.|++.. 
T Consensus        14 ~~v~c~~~~L~~-iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCSS-CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCCc-cCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            345677777774 455443  5678899999999877777888999999999999998887778888888888887764 


Q ss_pred             CCCCCCCCccccc--cCCCeeeccCCccccCCCcccC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCC
Q 007628           98 NEFEGSVPSKLFD--KDLDAIFLNDNRFQFGIPENLG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGC  174 (595)
Q Consensus        98 N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~~p~~l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~  174 (595)
                      |.++ .+....+.  .+|++|+|++|.+.......+. ..+|+.|++.+|+|+++..+.|..+ ..|++|+|++|+|.+.
T Consensus        91 ~~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~-~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL-GNLTHLFLHGNRISSV  168 (284)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCEE
T ss_pred             cccc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccc-cchhhcccccCccccc
Confidence            4554 44433333  6889999998888765554444 3678999999999987777777766 7899999999999988


Q ss_pred             CCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCC
Q 007628          175 LPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEP  247 (595)
Q Consensus       175 ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~  247 (595)
                      ...+|.++++|++|+|++|++++..++.|..+.+|++|||++|+|++....+|+++.+|++|+|++|.|.++.
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            8899999999999999999999988999999999999999999999988899999999999999999998753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.4e-25  Score=220.36  Aligned_cols=203  Identities=18%  Similarity=0.218  Sum_probs=154.9

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      ++..+..+|.++++|+. ++..|.  ++|++|+|++|+|+++...+|.++.+|++|+|++|+|+. ++ .+..+.+|++|
T Consensus         8 ~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L   82 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTL   82 (266)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEE
T ss_pred             ccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-ccccccccccc
Confidence            34466778999999986 566554  578999999999998777889999999999999999983 43 46788999999


Q ss_pred             EccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628           94 DLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      ||++|+|++.........+|++|+|++                       |.+.+.....+..+ .++++|++.+|.+.+
T Consensus        83 ~Ls~N~l~~~~~~~~~l~~L~~L~l~~-----------------------~~~~~~~~~~~~~l-~~l~~L~l~~n~l~~  138 (266)
T d1p9ag_          83 DLSHNQLQSLPLLGQTLPALTVLDVSF-----------------------NRLTSLPLGALRGL-GELQELYLKGNELKT  138 (266)
T ss_dssp             ECCSSCCSSCCCCTTTCTTCCEEECCS-----------------------SCCCCCCSSTTTTC-TTCCEEECTTSCCCC
T ss_pred             ccccccccccccccccccccccccccc-----------------------cccceeeccccccc-cccccccccccccce
Confidence            999999874322222224455555544                       44444444444444 667777777777776


Q ss_pred             CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      .....+..+.+|++|+|++|+|++...+.|..+.+|++|+|++|+|+ .+++.+..+.+|+.|+|++|.|.+.
T Consensus       139 l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             eccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            66777778888999999999998777778888899999999999988 6778888888899999999988764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.5e-25  Score=226.10  Aligned_cols=228  Identities=19%  Similarity=0.234  Sum_probs=192.5

Q ss_pred             ceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEecc-CCcCCCcCchhcCCCCCCCEEEc
Q 007628           17 VVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLS-NNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        17 ~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls-~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      .+++|+|++|+|+++....|.++.+|++|++++|+|.++....+.++..++.|++. .|.++.+....|.+|++|++|+|
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            57999999999999888889999999999999999999999999999999999865 66777777889999999999999


Q ss_pred             cCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCC-CCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628           96 RFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGN-SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        96 s~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~-~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      ++|.+.+.....+.. .+|+.|++.+|++++.....+.. ..|++|+|.+|+|++.....|..+ .+|++|++++|++++
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l-~~L~~l~l~~N~l~~  191 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL-HSLDRLLLHQNRVAH  191 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCCE
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccc-cccchhhhhhccccc
Confidence            999998544443333 78999999999998766666654 679999999999998888888877 899999999999999


Q ss_pred             CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      ..+..|..+.+|++|||++|+|++...++|+.+.+|++|+|++|.|.+.... .+-+..|+.+++..+++.+.
T Consensus       192 i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~  263 (284)
T d1ozna_         192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCS  263 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEE
T ss_pred             cChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeC
Confidence            9999999999999999999999988888999999999999999999875421 11122345555555655543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.9e-24  Score=216.70  Aligned_cols=224  Identities=21%  Similarity=0.290  Sum_probs=181.9

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      ++|++|||++|+|+.+...+|.++.+|++|++++|++..+.+.+|.+|.+|++|+|++|+|+. ++..  ....|+.|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhc
Confidence            679999999999998777789999999999999999998888999999999999999999984 4433  2457899999


Q ss_pred             cCCCCCCCCCccccc--cCCCeeeccCCccccC--CCc-ccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccc
Q 007628           96 RFNEFEGSVPSKLFD--KDLDAIFLNDNRFQFG--IPE-NLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDN  170 (595)
Q Consensus        96 s~N~l~g~ip~~l~~--~~L~~L~L~~N~l~~~--~p~-~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~  170 (595)
                      ++|.+.+ +....+.  ..++.+++..|.....  ... +....+|++|++.+|++.. ++..+   ..+|++|++.+|.
T Consensus       108 ~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~---~~~L~~L~l~~n~  182 (305)
T d1xkua_         108 HENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL---PPSLTELHLDGNK  182 (305)
T ss_dssp             CSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC---CTTCSEEECTTSC
T ss_pred             cccchhh-hhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCccc---CCccCEEECCCCc
Confidence            9999984 4444333  4566677766654322  222 2234678999999998874 33333   2678899999999


Q ss_pred             cCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCCCC
Q 007628          171 LTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGEPP  248 (595)
Q Consensus       171 l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~~p  248 (595)
                      +.+.....|..+.++++|++++|.|++.....|..+.+|++|+|++|+|+ .++.+|.++.+|++|+|++|+|+..-.
T Consensus       183 ~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         183 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             CCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccCh
Confidence            99888889999999999999999999888888999999999999999998 567889999999999999999986543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.3e-24  Score=213.68  Aligned_cols=180  Identities=22%  Similarity=0.254  Sum_probs=147.4

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      ++|++|||++|+|+++...+|.++.+|++|+|++|+|+.+ . .++.+.+|++|+|++|+|++ +...+.++.+|++|+|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEECCSSCCSS-CCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccccccccccccc-cccccccccccccccc
Confidence            5799999999999998778899999999999999999853 3 46889999999999999984 5668899999999999


Q ss_pred             cCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC
Q 007628           96 RFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL  175 (595)
Q Consensus        96 s~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i  175 (595)
                      ++|++.+.......                      ....+++|++++|.++......+..+ ..|++|++++|+|++..
T Consensus       108 ~~~~~~~~~~~~~~----------------------~l~~l~~L~l~~n~l~~l~~~~~~~l-~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_         108 SFNRLTSLPLGALR----------------------GLGELQELYLKGNELKTLPPGLLTPT-PKLEKLSLANNNLTELP  164 (266)
T ss_dssp             CSSCCCCCCSSTTT----------------------TCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECTTSCCSCCC
T ss_pred             cccccceeeccccc----------------------cccccccccccccccceecccccccc-ccchhcccccccccccC
Confidence            99998743222221                      12344555566666654444444444 77888899999998888


Q ss_pred             CCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCC
Q 007628          176 PPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGV  222 (595)
Q Consensus       176 p~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~  222 (595)
                      .+.|..+.+|++|||++|+|+ .+++.+..+.+|+.|+|++|.+...
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            888999999999999999999 8999999999999999999998753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=4.4e-22  Score=202.14  Aligned_cols=228  Identities=16%  Similarity=0.217  Sum_probs=191.5

Q ss_pred             CCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCC
Q 007628           11 NSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKL   90 (595)
Q Consensus        11 ~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L   90 (595)
                      .+.++.+|+.|++++|.+..+.+..|.++.+|+.|+|++|+|+.+ +..  ....|+.|++.+|.+.++....+.....+
T Consensus        50 ~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l-~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~  126 (305)
T d1xkua_          50 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-PEK--MPKTLQELRVHENEITKVRKSVFNGLNQM  126 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-CSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred             HhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC-ccc--hhhhhhhhhccccchhhhhhhhhhccccc
Confidence            467889999999999999998889999999999999999999954 433  34679999999999998877888889999


Q ss_pred             CEEEccCCCCCCCC--Cccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhh
Q 007628           91 KYLDLRFNEFEGSV--PSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILM  167 (595)
Q Consensus        91 ~~LdLs~N~l~g~i--p~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls  167 (595)
                      +.+++..|......  ...+.. .+|+.+++.+|++.. +...+ ..+|++|++.+|.+++.....|..+ ..+++|+++
T Consensus       127 ~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~-~~l~~L~~s  203 (305)
T d1xkua_         127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL-PPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLS  203 (305)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSC-CTTCSEEECTTSCCCEECTGGGTTC-TTCCEEECC
T ss_pred             cccccccccccccCCCccccccccccCccccccCCccc-cCccc-CCccCEEECCCCcCCCCChhHhhcc-ccccccccc
Confidence            99999988655322  122222 689999999998874 33332 4689999999999999988888888 789999999


Q ss_pred             ccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchh------ccCCCCCcEEEcccc
Q 007628          168 NDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSS------VCQLPNLQNFTYSFN  241 (595)
Q Consensus       168 ~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~------l~~l~~L~~L~Ls~N  241 (595)
                      +|++.+....+|.++.+|++|+|++|+|+ .++++|.++.+|++|+|++|+|+..-...      +..+.+|+.|+|++|
T Consensus       204 ~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         204 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             cccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCC
Confidence            99999888899999999999999999998 67889999999999999999998543333      345678999999999


Q ss_pred             cCCC
Q 007628          242 YFTG  245 (595)
Q Consensus       242 ~Lsg  245 (595)
                      .++.
T Consensus       283 ~~~~  286 (305)
T d1xkua_         283 PVQY  286 (305)
T ss_dssp             SSCG
T ss_pred             cCcc
Confidence            9863

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=5.9e-22  Score=205.94  Aligned_cols=226  Identities=22%  Similarity=0.297  Sum_probs=159.0

Q ss_pred             CCCCCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcC---------
Q 007628           10 FNSPSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKF---------   80 (595)
Q Consensus        10 ~~~~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~l---------   80 (595)
                      .+++.|++|++|||++|+|+++.  .|++|.+|++|+|++|+|.++.  .|++|.+|+.|++++|.+++..         
T Consensus        60 ~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~  135 (384)
T d2omza2          60 DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDPLKNLTNLN  135 (384)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGGGTTCTTCS
T ss_pred             cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccccccccccccccccccccccc
Confidence            34566788888888888888753  4888888888888888888643  4788888888888877765310         


Q ss_pred             ------------------------------------------------------chhcCCCCCCCEEEccCCCCCCCCCc
Q 007628           81 ------------------------------------------------------PKLFLSLPKLKYLDLRFNEFEGSVPS  106 (595)
Q Consensus        81 ------------------------------------------------------p~~l~~L~~L~~LdLs~N~l~g~ip~  106 (595)
                                                                            ...+..+.++++|++++|.+++..+ 
T Consensus       136 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-  214 (384)
T d2omza2         136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-  214 (384)
T ss_dssp             EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             ccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-
Confidence                                                                  1234446777888888888875433 


Q ss_pred             cccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC-----------
Q 007628          107 KLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL-----------  175 (595)
Q Consensus       107 ~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i-----------  175 (595)
                      .....+|++|+|++|+++. +.......+|+.|++.+|++++...  ++.+ .+|++|++++|++.+..           
T Consensus       215 ~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~--~~~~-~~L~~L~l~~~~l~~~~~~~~~~~l~~l  290 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNLAP--LSGL-TKLTELKLGANQISNISPLAGLTALTNL  290 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             ccccCCCCEEECCCCCCCC-cchhhcccccchhccccCccCCCCc--cccc-ccCCEeeccCcccCCCCccccccccccc
Confidence            3333677777777777664 2233334566777777776665432  3333 45566666555544321           


Q ss_pred             ---------CCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          176 ---------PPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       176 ---------p~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                               ...+..+.+|++|+|++|+|++..  .|..+.+|++|+|++|+|++ + ..|.+|.+|++|+|++|+|++.
T Consensus       291 ~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l-~~l~~l~~L~~L~l~~N~l~~l  366 (384)
T d2omza2         291 ELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-V-SSLANLTNINWLSAGHNQISDL  366 (384)
T ss_dssp             ECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-C-GGGGGCTTCCEEECCSSCCCBC
T ss_pred             cccccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-C-hhHcCCCCCCEEECCCCcCCCC
Confidence                     134666789999999999998643  48899999999999999985 3 3689999999999999999976


Q ss_pred             CC
Q 007628          247 PP  248 (595)
Q Consensus       247 ~p  248 (595)
                      .+
T Consensus       367 ~~  368 (384)
T d2omza2         367 TP  368 (384)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=7.9e-22  Score=204.96  Aligned_cols=219  Identities=20%  Similarity=0.293  Sum_probs=175.4

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .+.+|+.|+|++++|+.+  +.|++|++|++|+|++|+|+++.  .|++|.+|++|+|++|+|.+..  .|.+|++|+.|
T Consensus        42 ~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             HhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccc
Confidence            456899999999999875  56889999999999999999753  4999999999999999998653  48899999999


Q ss_pred             EccCCCCCCCCCcc---------------------------------------------------------------cc-
Q 007628           94 DLRFNEFEGSVPSK---------------------------------------------------------------LF-  109 (595)
Q Consensus        94 dLs~N~l~g~ip~~---------------------------------------------------------------l~-  109 (595)
                      ++++|.+++.....                                                               .. 
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (384)
T d2omza2         116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK  195 (384)
T ss_dssp             ECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence            99999877421110                                                               00 


Q ss_pred             ccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEe
Q 007628          110 DKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFD  189 (595)
Q Consensus       110 ~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~Ld  189 (595)
                      ..+++.|++++|.+++... .....+|++|++++|+++..  ..+..+ .+|+.|++.+|++++..  .|+.+.+|++|+
T Consensus       196 l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~~--~~l~~l-~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~  269 (384)
T d2omza2         196 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASL-TNLTDLDLANNQISNLA--PLSGLTKLTELK  269 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGC-TTCSEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             ccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCCCc--chhhcc-cccchhccccCccCCCC--cccccccCCEee
Confidence            1457778888888876543 34457899999999999863  356666 78999999999998653  478889999999


Q ss_pred             ccCccccCCC--------------------CCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCCC
Q 007628          190 VSFNHLQGSL--------------------PSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       190 Ls~N~L~g~l--------------------P~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg~  246 (595)
                      |++|++++..                    ...+..+.+|++|+|++|+|++..  .+..+.+|++|+|++|+|++.
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l  344 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV  344 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred             ccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC
Confidence            9998876431                    123566789999999999999753  488999999999999999864

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=5.5e-22  Score=193.28  Aligned_cols=211  Identities=16%  Similarity=0.218  Sum_probs=165.7

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY   92 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~   92 (595)
                      +.|.++..++|.++++++.+  .+.+|.+|+.|+|.+|+|+.+  +.|.+|.+|++|+|++|+|++..  .|.++.+|++
T Consensus        16 ~~l~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~   89 (227)
T d1h6ua2          16 PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITE   89 (227)
T ss_dssp             HHHHHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCE
T ss_pred             HHHHHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccc
Confidence            55566667788888888753  566788899999999999854  46889999999999999988654  3888999999


Q ss_pred             EEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccC
Q 007628           93 LDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLT  172 (595)
Q Consensus        93 LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~  172 (595)
                      |++++|.++ .+.......+|+.|++.++++.+. ........+..+.++++.+....  .+..+ .+|++|++++|.+.
T Consensus        90 l~~~~n~~~-~i~~l~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~--~~~~~-~~L~~L~l~~n~~~  164 (227)
T d1h6ua2          90 LELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNIS--PLAGL-TNLQYLSIGNAQVS  164 (227)
T ss_dssp             EECCSCCCS-CCGGGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCCG--GGGGC-TTCCEEECCSSCCC
T ss_pred             ccccccccc-cccccccccccccccccccccccc-chhccccchhhhhchhhhhchhh--hhccc-cccccccccccccc
Confidence            999999887 555444447899999988877643 33344567888888888876543  35555 67999999999887


Q ss_pred             CCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEccc
Q 007628          173 GCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF  240 (595)
Q Consensus       173 g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~  240 (595)
                      ..  ..|++|.+|++|||++|+|++ + ..|++|.+|++|+|++|+|++..  .|.++.+|+.|+|++
T Consensus       165 ~~--~~l~~l~~L~~L~Ls~n~l~~-l-~~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         165 DL--TPLANLSKLTTLKADDNKISD-I-SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             cc--hhhcccccceecccCCCccCC-C-hhhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            54  358899999999999999985 3 34889999999999999999643  488999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.5e-20  Score=180.59  Aligned_cols=219  Identities=11%  Similarity=0.092  Sum_probs=144.1

Q ss_pred             eEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcC-chhcCCCCCCCEEEccC
Q 007628           19 ASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKF-PKLFLSLPKLKYLDLRF   97 (595)
Q Consensus        19 ~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~l-p~~l~~L~~L~~LdLs~   97 (595)
                      ++++.++++++. ++..+.  .+|++|||++|+|+.+....|.+|.+|++|+|++|.+.+.+ ...|.++.+|++|++..
T Consensus        11 ~~i~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSS-CCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCC-cCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            467777777774 454442  46788888888888666667888888888888888877544 44677788888887764


Q ss_pred             -CCCCCCCCccccc-cCCCeeeccCCccccCCCcc-cC-CCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628           98 -NEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPEN-LG-NSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        98 -N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~-l~-~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                       |++.......+.. .+|++|++.+|++....... +. ...++.+...++.+.......+..+...++.|++.+|+++.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             5665433333332 67888888888776432211 11 13344555556666655555565554567778888888875


Q ss_pred             CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEccc
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF  240 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~  240 (595)
                      .....|.....++.+++++|+|+..-.+.|.++.+|++|+|++|+|+......|.++.+|+.|++.+
T Consensus       168 i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         168 IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            4444444433344556778888844445678889999999999998855455677777676666543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=2.7e-19  Score=173.94  Aligned_cols=188  Identities=15%  Similarity=0.247  Sum_probs=155.2

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .|++|+.|+|.+|+|+.+  +.|.+|++|++|+|++|+|.++.  .|.++.+|++|++++|.++. + ..|.++.+|++|
T Consensus        39 ~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~l  112 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIKTL  112 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEE
T ss_pred             HcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-cccccccccccc
Confidence            467899999999999975  46999999999999999999754  48999999999999999884 3 358899999999


Q ss_pred             EccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628           94 DLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      ++++|.+.+ +........++.++++.+++... .......+|++|++++|.+....  .+.++ .+|++|+|++|++.+
T Consensus       113 ~l~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~--~l~~l-~~L~~L~Ls~n~l~~  187 (227)
T d1h6ua2         113 DLTSTQITD-VTPLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLT--PLANL-SKLTTLKADDNKISD  187 (227)
T ss_dssp             ECTTSCCCC-CGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCG--GGTTC-TTCCEEECCSSCCCC
T ss_pred             ccccccccc-cchhccccchhhhhchhhhhchh-hhhccccccccccccccccccch--hhccc-ccceecccCCCccCC
Confidence            999999874 33333447888999988887643 33455578999999999987543  36677 789999999999985


Q ss_pred             CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccC
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAH  216 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~  216 (595)
                      .  ..|++|.+|++|+|++|+|++ +. .|+++.+|++|+|++
T Consensus       188 l--~~l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         188 I--SPLASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             C--GGGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             C--hhhcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            3  358899999999999999985 33 488999999999974

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=4.8e-20  Score=177.65  Aligned_cols=186  Identities=17%  Similarity=0.218  Sum_probs=128.1

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEc
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDL   95 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdL   95 (595)
                      .++..++|.++++++.+..  .+|.+|++|++++|+|+++.  .|.+|++|++|+|++|+|+++.  .+.+|.+|++|+|
T Consensus        24 ~~~i~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l   97 (210)
T d1h6ta2          24 AETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFL   97 (210)
T ss_dssp             HHHHHHHTTCSCTTSEECH--HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             HHHHHHHhCcCccCCccCH--HHhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCcccccccc
Confidence            3344456666777665432  35667888888888887543  4778888888888888888543  3677888888888


Q ss_pred             cCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCC
Q 007628           96 RFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCL  175 (595)
Q Consensus        96 s~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~i  175 (595)
                      ++|+|++ +.......+|+.|++.+|.+.. +                        ..+..+ ..++.+++.+|.+.+. 
T Consensus        98 ~~n~i~~-l~~l~~l~~L~~L~l~~~~~~~-~------------------------~~l~~l-~~l~~l~~~~n~l~~~-  149 (210)
T d1h6ta2          98 DENKVKD-LSSLKDLKKLKSLSLEHNGISD-I------------------------NGLVHL-PQLESLYLGNNKITDI-  149 (210)
T ss_dssp             CSSCCCC-GGGGTTCTTCCEEECTTSCCCC-C------------------------GGGGGC-TTCCEEECCSSCCCCC-
T ss_pred             ccccccc-cccccccccccccccccccccc-c------------------------cccccc-cccccccccccccccc-
Confidence            8888873 3332222556666655555431 1                        123333 4555666666655532 


Q ss_pred             CCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEccc
Q 007628          176 PPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF  240 (595)
Q Consensus       176 p~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~  240 (595)
                       ..+..+.+|++|+|++|++++. . .|.+|.+|++|+|++|+|++ + ..|.+|.+|++|+|++
T Consensus       150 -~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         150 -TVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-L-RALAGLKNLDVLELFS  209 (210)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-C-GGGTTCTTCSEEEEEE
T ss_pred             -cccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-C-hhhcCCCCCCEEEccC
Confidence             3456788999999999999853 2 48889999999999999985 4 4689999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.3e-19  Score=172.87  Aligned_cols=199  Identities=15%  Similarity=0.125  Sum_probs=148.4

Q ss_pred             CceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCC-chhhcCCCCCCEEecc-CCcCCCcCchhcCCCCCCCEE
Q 007628           16 RVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVV-PSTFRRLKLLYEVDLS-NNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~l-p~~~~~L~~L~~L~Ls-~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      ++++.|||++|+|+.+....|.++.+|++|+|++|.+.+.+ ...|.++.+|++|++. .|++.......|.++.+|++|
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            47999999999999877778999999999999999987654 4578999999999976 467887778889999999999


Q ss_pred             EccCCCCCCCCCccccc---cCCCeeeccCCccccCCCcccCC--CCceeEEeeccCCCCCcCcccccccchhhHHHhhc
Q 007628           94 DLRFNEFEGSVPSKLFD---KDLDAIFLNDNRFQFGIPENLGN--SPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMN  168 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~---~~L~~L~L~~N~l~~~~p~~l~~--~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~  168 (595)
                      +|++|+|+. +....+.   ..++.+...++++.......+..  ..++.|++.+|+++.... .++.+...++.+++.+
T Consensus       109 ~l~~~~l~~-~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~-~~~~~~~l~~~~~l~~  186 (242)
T d1xwdc1         109 LISNTGIKH-LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-CAFNGTQLDELNLSDN  186 (242)
T ss_dssp             EEESCCCCS-CCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT-TTTTTCCEEEEECTTC
T ss_pred             ccchhhhcc-cccccccccccccccccccccccccccccccccccccceeeeccccccccccc-ccccchhhhccccccc
Confidence            999999984 4333333   34444455555555433333332  468889999999985444 4444423344456788


Q ss_pred             cccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccC
Q 007628          169 DNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAH  216 (595)
Q Consensus       169 N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~  216 (595)
                      |+++..-...|.+|.+|++|||++|+|+..-...|.+|.+|+.|++.+
T Consensus       187 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             TTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             cccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            888865566789999999999999999954455677777777666543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.9e-19  Score=171.88  Aligned_cols=184  Identities=17%  Similarity=0.290  Sum_probs=119.4

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .+.++..++++++++++.+  ...++.+|+.|+|++|.|+.+  +.|++|++|++|+|++|+|++..  .|.+|.+|++|
T Consensus        16 ~l~~~i~~~l~~~~~~~~~--~~~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L   89 (199)
T d2omxa2          16 ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDI   89 (199)
T ss_dssp             HHHHHHHHHTTCSSTTSEE--CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             HHHHHHHHHhCCCCCCCcc--CHHHhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccc
Confidence            3444555667777777754  234677888999999988854  45788899999999999988653  38888899999


Q ss_pred             EccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628           94 DLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      +|++|.+. .+........|+.|++++|++.                       ..  ..+..+ .+|+.|++++|++..
T Consensus        90 ~l~~n~~~-~~~~l~~l~~L~~L~l~~~~~~-----------------------~~--~~~~~l-~~L~~L~l~~n~l~~  142 (199)
T d2omxa2          90 LMNNNQIA-DITPLANLTNLTGLTLFNNQIT-----------------------DI--DPLKNL-TNLNRLELSSNTISD  142 (199)
T ss_dssp             ECCSSCCC-CCGGGTTCTTCSEEECCSSCCC-----------------------CC--GGGTTC-TTCSEEECCSSCCCC
T ss_pred             cccccccc-cccccccccccccccccccccc-----------------------cc--cccchh-hhhHHhhhhhhhhcc
Confidence            99988876 3322111244444444444432                       21  123333 455566666665542


Q ss_pred             CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEE
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNF  236 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L  236 (595)
                      .  ..|..+.+|++|++++|+|++.  ..|++|.+|++|+|++|+|++ + ..|++|.+|++|
T Consensus       143 ~--~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~~-i-~~l~~L~~L~~L  199 (199)
T d2omxa2         143 I--SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSD-I-SVLAKLTNLESL  199 (199)
T ss_dssp             C--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred             c--ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCCCC-C-ccccCCCCCCcC
Confidence            2  3466677777777777777643  246777777777777777764 3 356777777765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=1.7e-19  Score=171.27  Aligned_cols=81  Identities=21%  Similarity=0.347  Sum_probs=67.6

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCC-CchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGV-VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~-lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      .+++|.++++++. ++..+.  .+|++|+|++|+|++. ....|+++.+|++|+|++|+|.++..+.|..+.+|++|+|+
T Consensus        10 ~~~v~Cs~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCc-cCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            3478999999886 565553  6789999999999764 46678899999999999999998888899999999999999


Q ss_pred             CCCCC
Q 007628           97 FNEFE  101 (595)
Q Consensus        97 ~N~l~  101 (595)
                      +|+|+
T Consensus        87 ~N~l~   91 (192)
T d1w8aa_          87 ENKIK   91 (192)
T ss_dssp             SCCCC
T ss_pred             ccccc
Confidence            99887

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=2e-18  Score=166.11  Aligned_cols=166  Identities=21%  Similarity=0.330  Sum_probs=128.2

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .|++|+.|++++|+|+++.  .|.+|++|++|+|++|+|+++.  .+++|.+|++|+|++|+|++ +. .+.++.+|++|
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccc
Confidence            3678999999999998753  4889999999999999999753  57899999999999999985 44 58899999999


Q ss_pred             EccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628           94 DLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      ++++|.+. .+........|+.+++++|++++.                         ..+..+ .+|++|++++|++.+
T Consensus       118 ~l~~~~~~-~~~~l~~l~~l~~l~~~~n~l~~~-------------------------~~~~~l-~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         118 SLEHNGIS-DINGLVHLPQLESLYLGNNKITDI-------------------------TVLSRL-TKLDTLSLEDNQISD  170 (210)
T ss_dssp             ECTTSCCC-CCGGGGGCTTCCEEECCSSCCCCC-------------------------GGGGGC-TTCSEEECCSSCCCC
T ss_pred             cccccccc-cccccccccccccccccccccccc-------------------------cccccc-ccccccccccccccc
Confidence            99999987 444333335677777766665421                         122233 566677777777664


Q ss_pred             CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccC
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAH  216 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~  216 (595)
                      .  ..|++|.+|++|+|++|+|+. +. .|.+|.+|++|+|++
T Consensus       171 i--~~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         171 I--VPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             c--ccccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            3  247788999999999999984 53 689999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=6e-18  Score=160.33  Aligned_cols=153  Identities=20%  Similarity=0.320  Sum_probs=117.7

Q ss_pred             CceeEEEccCCCCCCC-CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEE
Q 007628           16 RVVASIDLNHADIAGY-LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLD   94 (595)
Q Consensus        16 ~~L~~LdLs~n~i~~~-lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~Ld   94 (595)
                      .++++|+|++|+|+++ ....|.++.+|++|+|++|+|.++....|..+.+|++|+|++|+|+++..++|.+|.+|++|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            5799999999999864 466789999999999999999999999999999999999999999988888999999999999


Q ss_pred             ccCCCCCCCCCccccc-cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628           95 LRFNEFEGSVPSKLFD-KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        95 Ls~N~l~g~ip~~l~~-~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      |++|+|++.....+.. .+|++|+|++|.+.+                       ...  +..+...++.+.+..|.+..
T Consensus       109 L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~-----------------------~~~--~~~~~~~l~~~~l~~~~~~c  163 (192)
T d1w8aa_         109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNC-----------------------NCH--LAWFAEWLRKKSLNGGAARC  163 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBCC-----------------------SGG--GHHHHHHHHHHCCSGGGCBB
T ss_pred             cCCccccccCHHHhcCCccccccccccccccc-----------------------ccc--hHHHhhhhhhhcccCCCeEe
Confidence            9999999433333222 456666666555542                       211  11122346667777777665


Q ss_pred             CCCCccCCCccceEEeccCcccc
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQ  196 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~  196 (595)
                      ..+.   .+++++.+||+.|.|+
T Consensus       164 ~~p~---~l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         164 GAPS---KVRDVQIKDLPHSEFK  183 (192)
T ss_dssp             CSST---TTTTSBGGGSCTTTCC
T ss_pred             CCCh---hhcCCEeeecCHhhCc
Confidence            4443   4566788899999887

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.3e-17  Score=157.15  Aligned_cols=162  Identities=19%  Similarity=0.313  Sum_probs=121.5

Q ss_pred             CCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEE
Q 007628           14 SLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYL   93 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~L   93 (595)
                      .+.+|+.|++++|+|+.+  +.+++|++|++|+|++|+|+++.  .|++|.+|++|+|++|.+... . .|.++.+|++|
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCcc--cccCCcccccccccccccccc-c-ccccccccccc
Confidence            367899999999999875  46889999999999999999754  399999999999999998843 3 48899999999


Q ss_pred             EccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCC
Q 007628           94 DLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTG  173 (595)
Q Consensus        94 dLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g  173 (595)
                      ++++|.+.+ +.......+|+.|++++|++.. +.                        .+..+ .+|++|++.+|++++
T Consensus       112 ~l~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~-~~------------------------~l~~~-~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         112 TLFNNQITD-IDPLKNLTNLNRLELSSNTISD-IS------------------------ALSGL-TSLQQLNFSSNQVTD  164 (199)
T ss_dssp             ECCSSCCCC-CGGGTTCTTCSEEECCSSCCCC-CG------------------------GGTTC-TTCSEEECCSSCCCC
T ss_pred             ccccccccc-ccccchhhhhHHhhhhhhhhcc-cc------------------------ccccc-ccccccccccccccC
Confidence            999999874 3222222556666666665542 11                        23333 455666666666654


Q ss_pred             CCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEE
Q 007628          174 CLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQL  212 (595)
Q Consensus       174 ~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L  212 (595)
                      .  ..|++|.+|++|+|++|+|++ + +.|++|++|++|
T Consensus       165 l--~~l~~l~~L~~L~ls~N~i~~-i-~~l~~L~~L~~L  199 (199)
T d2omxa2         165 L--KPLANLTTLERLDISSNKVSD-I-SVLAKLTNLESL  199 (199)
T ss_dssp             C--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEE
T ss_pred             C--ccccCCCCCCEEECCCCCCCC-C-ccccCCCCCCcC
Confidence            3  247788999999999999984 4 358888888876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.65  E-value=2.8e-15  Score=152.42  Aligned_cols=56  Identities=27%  Similarity=0.368  Sum_probs=36.0

Q ss_pred             CccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEcccccCCC
Q 007628          182 LKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSFNYFTG  245 (595)
Q Consensus       182 L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~N~Lsg  245 (595)
                      +.+|++|+|++|+|+ .++..   +.+|++|+|++|+|+ .++.   .+.+|++|+|++|.|+.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS
T ss_pred             CCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCCC
Confidence            356777777777776 45543   456777777777776 3433   23567777777777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.63  E-value=5.5e-18  Score=174.64  Aligned_cols=231  Identities=18%  Similarity=0.177  Sum_probs=151.3

Q ss_pred             CCceeEEEccCCCCCCC----CchhhcCCCCCcEEEccCCcCCCC----------CchhhcCCCCCCEEeccCCcCCCc-
Q 007628           15 LRVVASIDLNHADIAGY----LPPEIGRLTDLAIFHINSNRFCGV----------VPSTFRRLKLLYEVDLSNNRFVGK-   79 (595)
Q Consensus        15 l~~L~~LdLs~n~i~~~----lp~~~~~L~~L~~L~Ls~N~l~~~----------lp~~~~~L~~L~~L~Ls~N~Lsg~-   79 (595)
                      ...|+.|+|++|.|...    +...+..+++|+.|+|+++.+...          +-..+..+.+|+.|+|++|.|... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            45688888888887543    334456778888888887765422          223456778889999998888754 


Q ss_pred             ---CchhcCCCCCCCEEEccCCCCCCCCCccc--------------cccCCCeeeccCCccccCCCccc-----CCCCce
Q 007628           80 ---FPKLFLSLPKLKYLDLRFNEFEGSVPSKL--------------FDKDLDAIFLNDNRFQFGIPENL-----GNSPVS  137 (595)
Q Consensus        80 ---lp~~l~~L~~L~~LdLs~N~l~g~ip~~l--------------~~~~L~~L~L~~N~l~~~~p~~l-----~~~~L~  137 (595)
                         +...+..+.+|++|+|++|.|.......+              ....|+.|++++|++....-..+     ....|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence               33445567888999998888752111111              01467788888887753322222     235788


Q ss_pred             eEEeeccCCCCC-----cCcccccccchhhHHHhhccccCCC----CCCccCCCccceEEeccCccccCC----CCCCcC
Q 007628          138 VLVFANNDLGGC-----IPGSIGKMGKTLNEIILMNDNLTGC----LPPQIGMLKNLTVFDVSFNHLQGS----LPSSIG  204 (595)
Q Consensus       138 ~L~L~~N~l~~~-----ip~~l~~l~~~L~~L~Ls~N~l~g~----ip~~~~~L~~L~~LdLs~N~L~g~----lP~~l~  204 (595)
                      .|+|.+|+|+..     +...+..+ .+|++|+|++|.|+..    +...+..+.+|++|+|++|.|++.    +-+.|.
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~-~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~  268 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFS  268 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccchhhhhcch-hhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhh
Confidence            888888887642     22334444 6788888888887532    334566778889999999988753    222332


Q ss_pred             C--CCCccEEEccCCcCCCC----Cchhcc-CCCCCcEEEcccccCCCC
Q 007628          205 N--MKSLEQLNVAHNRFTGV----IPSSVC-QLPNLQNFTYSFNYFTGE  246 (595)
Q Consensus       205 ~--L~~L~~L~Ls~N~Lsg~----iP~~l~-~l~~L~~L~Ls~N~Lsg~  246 (595)
                      .  ..+|++|+|++|+|+..    +-..+. ++.+|+.|+|++|+|...
T Consensus       269 ~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             TCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             hccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence            2  35688899999988642    223332 567888999999988654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.8e-16  Score=159.48  Aligned_cols=60  Identities=10%  Similarity=0.045  Sum_probs=32.9

Q ss_pred             CCCCcEEEccCCcCCCC-CchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCC
Q 007628           39 LTDLAIFHINSNRFCGV-VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFN   98 (595)
Q Consensus        39 L~~L~~L~Ls~N~l~~~-lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N   98 (595)
                      ..+|++|||+++.|.+. +...+.++.+|++|+|++|++++.....|.++.+|++|+|+++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence            34556666665555432 2333455566666666666555444455555566666666553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.1e-17  Score=174.01  Aligned_cols=89  Identities=20%  Similarity=0.280  Sum_probs=61.5

Q ss_pred             CCCCceeEEEccCCCCCCC----CchhhcCCCCCcEEEccCCcCCCC----Cchhhc-CCCCCCEEeccCCcCCCc----
Q 007628           13 PSLRVVASIDLNHADIAGY----LPPEIGRLTDLAIFHINSNRFCGV----VPSTFR-RLKLLYEVDLSNNRFVGK----   79 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~----lp~~~~~L~~L~~L~Ls~N~l~~~----lp~~~~-~L~~L~~L~Ls~N~Lsg~----   79 (595)
                      ..++++++|+|++|+|+..    +...+..+++|++|||++|+|++.    +.+.|. ...+|++|+|++|+|++.    
T Consensus        24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~  103 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  103 (460)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccc
Confidence            3456778888888887632    344567788888888888887532    122222 235788888888888743    


Q ss_pred             CchhcCCCCCCCEEEccCCCCC
Q 007628           80 FPKLFLSLPKLKYLDLRFNEFE  101 (595)
Q Consensus        80 lp~~l~~L~~L~~LdLs~N~l~  101 (595)
                      +...|..+.+|++|+|++|.|+
T Consensus       104 l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCH
T ss_pred             ccchhhccccccccccccccch
Confidence            3456777888888888888764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.54  E-value=1.3e-16  Score=164.13  Aligned_cols=213  Identities=14%  Similarity=0.167  Sum_probs=155.7

Q ss_pred             CchhhcCCCCCcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCCCc----------CchhcCCCCCCCEEEccC
Q 007628           32 LPPEIGRLTDLAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFVGK----------FPKLFLSLPKLKYLDLRF   97 (595)
Q Consensus        32 lp~~~~~L~~L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~----------lp~~l~~L~~L~~LdLs~   97 (595)
                      +-..+.++..|+.|+|++|.|...    +...|..+.+|+.|+|+++.+...          +-..+..+.+|++|||++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            345677789999999999998753    444567889999999998865422          334567789999999999


Q ss_pred             CCCCCCCCcccc-----ccCCCeeeccCCccccCCCcc--------------cCCCCceeEEeeccCCCCCcCccc----
Q 007628           98 NEFEGSVPSKLF-----DKDLDAIFLNDNRFQFGIPEN--------------LGNSPVSVLVFANNDLGGCIPGSI----  154 (595)
Q Consensus        98 N~l~g~ip~~l~-----~~~L~~L~L~~N~l~~~~p~~--------------l~~~~L~~L~L~~N~l~~~ip~~l----  154 (595)
                      |.|+...-..+.     ..+|++|+|++|.+.......              .....|+.|++++|+++...-..|    
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence            999864333332     168999999999875221111              123568899999998875443333    


Q ss_pred             ccccchhhHHHhhccccCCC-----CCCccCCCccceEEeccCccccCC----CCCCcCCCCCccEEEccCCcCCCC---
Q 007628          155 GKMGKTLNEIILMNDNLTGC-----LPPQIGMLKNLTVFDVSFNHLQGS----LPSSIGNMKSLEQLNVAHNRFTGV---  222 (595)
Q Consensus       155 ~~l~~~L~~L~Ls~N~l~g~-----ip~~~~~L~~L~~LdLs~N~L~g~----lP~~l~~L~~L~~L~Ls~N~Lsg~---  222 (595)
                      ..+ ..|++|+|++|+|...     +...+..+.+|++|+|++|.|+..    +...+..+.+|++|+|++|.|++.   
T Consensus       183 ~~~-~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         183 QSH-RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHC-TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhh-hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            333 6799999999987632     345577789999999999998632    445677889999999999999864   


Q ss_pred             -CchhccC--CCCCcEEEcccccCCC
Q 007628          223 -IPSSVCQ--LPNLQNFTYSFNYFTG  245 (595)
Q Consensus       223 -iP~~l~~--l~~L~~L~Ls~N~Lsg  245 (595)
                       +-+.+..  ...|++|||++|.|+.
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCCh
Confidence             3334433  3579999999999865

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.53  E-value=8.8e-14  Score=141.10  Aligned_cols=69  Identities=28%  Similarity=0.419  Sum_probs=53.4

Q ss_pred             chhhHHHhhccccCCCCCCccCCCccceEEeccCccccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEc
Q 007628          159 KTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTY  238 (595)
Q Consensus       159 ~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~L  238 (595)
                      .+|++|+|++|+|+ .++..   +.+|+.|+|++|+|+ .+++.   +.+|++|+|++|+|+ .+++..   .+|+.|.+
T Consensus       284 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~---~~L~~L~~  351 (353)
T d1jl5a_         284 PSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIP---ESVEDLRM  351 (353)
T ss_dssp             TTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCC---TTCCEEEC
T ss_pred             CCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccc---cccCeeEC
Confidence            57999999999988 55544   568999999999998 56654   568999999999998 555533   35677665


Q ss_pred             c
Q 007628          239 S  239 (595)
Q Consensus       239 s  239 (595)
                      .
T Consensus       352 ~  352 (353)
T d1jl5a_         352 N  352 (353)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.4e-16  Score=155.31  Aligned_cols=214  Identities=18%  Similarity=0.154  Sum_probs=141.4

Q ss_pred             CCCCCCCceeEEEccCCCCCCC-CchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCC-cCCCc-CchhcCC
Q 007628           10 FNSPSLRVVASIDLNHADIAGY-LPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNN-RFVGK-FPKLFLS   86 (595)
Q Consensus        10 ~~~~~l~~L~~LdLs~n~i~~~-lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N-~Lsg~-lp~~l~~   86 (595)
                      +......+|+.|||+++.|++. +...+.++.+|++|+|++|.+.+....+|+++.+|++|+|+++ +|+.. +...+.+
T Consensus        40 ~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~  119 (284)
T d2astb2          40 AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS  119 (284)
T ss_dssp             CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHH
Confidence            3445667899999999988754 3455788999999999999999888888999999999999995 56532 2233567


Q ss_pred             CCCCCEEEccCC-CCCCCCCcccc-c--cCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhh
Q 007628           87 LPKLKYLDLRFN-EFEGSVPSKLF-D--KDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLN  162 (595)
Q Consensus        87 L~~L~~LdLs~N-~l~g~ip~~l~-~--~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~  162 (595)
                      +++|++|+|+++ ++++..-...+ .  .+|+.|+|+++..                     .++...-..+.....+|+
T Consensus       120 ~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---------------------~i~~~~l~~l~~~~~~L~  178 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK---------------------NLQKSDLSTLVRRCPNLV  178 (284)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG---------------------GSCHHHHHHHHHHCTTCS
T ss_pred             HHhccccccccccccccccchhhhcccccccchhhhccccc---------------------cccccccccccccccccc
Confidence            899999999986 44421111111 1  3566666654321                     111111112222225677


Q ss_pred             HHHhhcc-ccCCCCCCccCCCccceEEeccCc-cccCCCCCCcCCCCCccEEEccCCcCCCCCchhccCCCCCcEEEccc
Q 007628          163 EIILMND-NLTGCLPPQIGMLKNLTVFDVSFN-HLQGSLPSSIGNMKSLEQLNVAHNRFTGVIPSSVCQLPNLQNFTYSF  240 (595)
Q Consensus       163 ~L~Ls~N-~l~g~ip~~~~~L~~L~~LdLs~N-~L~g~lP~~l~~L~~L~~L~Ls~N~Lsg~iP~~l~~l~~L~~L~Ls~  240 (595)
                      +|+|++| .+++.....|.++.+|++|+|++| .|++.....++++.+|++|+|+++.-.+.+......+.+|   ++..
T Consensus       179 ~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~  255 (284)
T d2astb2         179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINC  255 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESC
T ss_pred             ccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccC
Confidence            7777665 345455566778899999999995 6776666678889999999999883222333333445554   4677


Q ss_pred             ccCCCCC
Q 007628          241 NYFTGEP  247 (595)
Q Consensus       241 N~Lsg~~  247 (595)
                      ++|++..
T Consensus       256 ~~ls~~~  262 (284)
T d2astb2         256 SHFTTIA  262 (284)
T ss_dssp             CCSCCTT
T ss_pred             ccCCCCC
Confidence            7777643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=3.6e-14  Score=124.73  Aligned_cols=77  Identities=22%  Similarity=0.317  Sum_probs=36.1

Q ss_pred             EEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCC
Q 007628           20 SIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNE   99 (595)
Q Consensus        20 ~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~   99 (595)
                      +|||++|+|+.+  ..++++.+|++|||++|+|++ ++.+|+++.+|++|+|++|+|++. + .|.+|.+|++|+|++|+
T Consensus         2 ~L~Ls~n~l~~l--~~l~~l~~L~~L~ls~N~l~~-lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCSSC--CCGGGGTTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCCCC--cccccCCCCCEEECCCCccCc-chhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCc
Confidence            455555555432  124455555555555555542 334445555555555555555422 2 24444445555444444


Q ss_pred             CC
Q 007628          100 FE  101 (595)
Q Consensus       100 l~  101 (595)
                      |+
T Consensus        77 i~   78 (124)
T d1dcea3          77 LQ   78 (124)
T ss_dssp             CC
T ss_pred             cC
Confidence            43

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.9e-15  Score=137.22  Aligned_cols=130  Identities=18%  Similarity=0.143  Sum_probs=83.6

Q ss_pred             hhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCC
Q 007628           35 EIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLD  114 (595)
Q Consensus        35 ~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~  114 (595)
                      .|.++.+|++|||++|+|+.+ ...+..+.+|+.|||++|+|+. + +.|..|.+|++|+|++|+|++            
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~------------   77 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR------------   77 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE------------
T ss_pred             hccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccC------------
Confidence            355666777777777777743 4555667777777777777763 3 346667777777777776651            


Q ss_pred             eeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCcc
Q 007628          115 AIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNH  194 (595)
Q Consensus       115 ~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~  194 (595)
                                                         +                        ....+..+.+|++|+|++|+
T Consensus        78 -----------------------------------l------------------------~~~~~~~l~~L~~L~L~~N~   98 (162)
T d1a9na_          78 -----------------------------------I------------------------GEGLDQALPDLTELILTNNS   98 (162)
T ss_dssp             -----------------------------------E------------------------CSCHHHHCTTCCEEECCSCC
T ss_pred             -----------------------------------C------------------------Cccccccccccccceecccc
Confidence                                               0                        01122345677778888887


Q ss_pred             ccCCC-CCCcCCCCCccEEEccCCcCCCCC---chhccCCCCCcEEEc
Q 007628          195 LQGSL-PSSIGNMKSLEQLNVAHNRFTGVI---PSSVCQLPNLQNFTY  238 (595)
Q Consensus       195 L~g~l-P~~l~~L~~L~~L~Ls~N~Lsg~i---P~~l~~l~~L~~L~L  238 (595)
                      |+..- -..|..|.+|++|+|++|.++..-   ...+..+.+|++||.
T Consensus        99 i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          99 LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            76321 135677788888888888876432   135677888888763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.6e-16  Score=165.52  Aligned_cols=232  Identities=16%  Similarity=0.189  Sum_probs=142.6

Q ss_pred             CCCceeEEEccCCCCCCC----Cchhhc-CCCCCcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCCCcC----
Q 007628           14 SLRVVASIDLNHADIAGY----LPPEIG-RLTDLAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFVGKF----   80 (595)
Q Consensus        14 ~l~~L~~LdLs~n~i~~~----lp~~~~-~L~~L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~l----   80 (595)
                      .+.+|+.|||++|+|+..    +.+.+. ...+|+.|+|++|+|++.    +...|..+.+|++|+|++|+|+...    
T Consensus        53 ~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l  132 (460)
T d1z7xw1          53 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL  132 (460)
T ss_dssp             TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred             cCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhh
Confidence            456799999999988642    122222 234799999999998764    3456778899999999998764210    


Q ss_pred             -----------------------------chhcCCCCCCCEEEccCCC-----------------------------CCC
Q 007628           81 -----------------------------PKLFLSLPKLKYLDLRFNE-----------------------------FEG  102 (595)
Q Consensus        81 -----------------------------p~~l~~L~~L~~LdLs~N~-----------------------------l~g  102 (595)
                                                   -..+.....++.++++++.                             +..
T Consensus       133 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~  212 (460)
T d1z7xw1         133 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  212 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             hhcccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                         0001112233333333322                             210


Q ss_pred             C----------------------------CC----cccc--ccCCCeeeccCCccccCCCc----c-cCCCCceeEEeec
Q 007628          103 S----------------------------VP----SKLF--DKDLDAIFLNDNRFQFGIPE----N-LGNSPVSVLVFAN  143 (595)
Q Consensus       103 ~----------------------------ip----~~l~--~~~L~~L~L~~N~l~~~~p~----~-l~~~~L~~L~L~~  143 (595)
                      .                            .-    ....  ...|+.|+|++|.+......    . .....++.+++++
T Consensus       213 ~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~  292 (460)
T d1z7xw1         213 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG  292 (460)
T ss_dssp             THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             hhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            0                            00    0000  13588889988877533211    1 1245688889998


Q ss_pred             cCCCCCcCccc----ccccchhhHHHhhccccCCCCCCcc----CCCccceEEeccCccccCC----CCCCcC-CCCCcc
Q 007628          144 NDLGGCIPGSI----GKMGKTLNEIILMNDNLTGCLPPQI----GMLKNLTVFDVSFNHLQGS----LPSSIG-NMKSLE  210 (595)
Q Consensus       144 N~l~~~ip~~l----~~l~~~L~~L~Ls~N~l~g~ip~~~----~~L~~L~~LdLs~N~L~g~----lP~~l~-~L~~L~  210 (595)
                      |.++......+    ......|+.+++.+|.++......|    ..+.+|++|||++|.|++.    +.+.+. ....|+
T Consensus       293 n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~  372 (460)
T d1z7xw1         293 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR  372 (460)
T ss_dssp             CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred             ccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCC
Confidence            88864332222    2222467888888887764432323    3446799999999988643    233333 456799


Q ss_pred             EEEccCCcCCCC----CchhccCCCCCcEEEcccccCCC
Q 007628          211 QLNVAHNRFTGV----IPSSVCQLPNLQNFTYSFNYFTG  245 (595)
Q Consensus       211 ~L~Ls~N~Lsg~----iP~~l~~l~~L~~L~Ls~N~Lsg  245 (595)
                      +|+|++|+|++.    +.+.+..+.+|++|||++|+|+.
T Consensus       373 ~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             EEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             EEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence            999999998752    44556677889999999998875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.2e-15  Score=135.00  Aligned_cols=86  Identities=21%  Similarity=0.147  Sum_probs=74.8

Q ss_pred             CCCCceeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCE
Q 007628           13 PSLRVVASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKY   92 (595)
Q Consensus        13 ~~l~~L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~   92 (595)
                      .++..++.|||++|+|+.+ ...+..+.+|+.|||++|+|+.+  +.|..|.+|++|+|++|+|+.+....+..+.+|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             cCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            3455789999999999986 55678899999999999999954  46899999999999999999766667778999999


Q ss_pred             EEccCCCCC
Q 007628           93 LDLRFNEFE  101 (595)
Q Consensus        93 LdLs~N~l~  101 (595)
                      |+|++|+|+
T Consensus        92 L~L~~N~i~  100 (162)
T d1a9na_          92 LILTNNSLV  100 (162)
T ss_dssp             EECCSCCCC
T ss_pred             ceecccccc
Confidence            999999986

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=3e-13  Score=118.73  Aligned_cols=102  Identities=23%  Similarity=0.304  Sum_probs=81.0

Q ss_pred             cEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccccCCCeeeccCCc
Q 007628           43 AIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFDKDLDAIFLNDNR  122 (595)
Q Consensus        43 ~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~  122 (595)
                      |+|||++|+|+.+ . .|++|.+|++|||++|+|+ .++..|..+.+|++|+|++|+|+ .++......+|++|+|++|+
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCccccccccCeEECCCCc
Confidence            6899999999844 3 5889999999999999998 56777889999999999999998 45543334789999999999


Q ss_pred             cccCCC-c-ccCCCCceeEEeeccCCCC
Q 007628          123 FQFGIP-E-NLGNSPVSVLVFANNDLGG  148 (595)
Q Consensus       123 l~~~~p-~-~l~~~~L~~L~L~~N~l~~  148 (595)
                      +..... . .....+|++|++++|.++.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            875432 2 3344679999999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.40  E-value=1.4e-15  Score=144.89  Aligned_cols=143  Identities=20%  Similarity=0.245  Sum_probs=84.1

Q ss_pred             CCcEEEccCC--cCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCCccccc-cCCCeee
Q 007628           41 DLAIFHINSN--RFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVPSKLFD-KDLDAIF  117 (595)
Q Consensus        41 ~L~~L~Ls~N--~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip~~l~~-~~L~~L~  117 (595)
                      .++.++|.++  .|. .++..|..|.+|++|+|++|+|+. +. .|.+|++|++|||++|+|+ .++..... .+|+.|+
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccc
Confidence            3445555543  233 455677788888888888888774 33 4677788888888888776 33321111 2233333


Q ss_pred             ccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhccccCCCCCCccCCCccceEEeccCccccC
Q 007628          118 LNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNLTGCLPPQIGMLKNLTVFDVSFNHLQG  197 (595)
Q Consensus       118 L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l~g~ip~~~~~L~~L~~LdLs~N~L~g  197 (595)
                      |++|+                                                ++..  ..|..|.+|++|+|++|+|+.
T Consensus       100 l~~N~------------------------------------------------i~~l--~~~~~l~~L~~L~L~~N~i~~  129 (198)
T d1m9la_         100 ISYNQ------------------------------------------------IASL--SGIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             CSEEE------------------------------------------------CCCH--HHHHHHHHSSEEEESEEECCC
T ss_pred             ccccc------------------------------------------------cccc--ccccccccccccccccchhcc
Confidence            33332                                                2211  123455677777777777763


Q ss_pred             CCC-CCcCCCCCccEEEccCCcCCCCCch----------hccCCCCCcEEE
Q 007628          198 SLP-SSIGNMKSLEQLNVAHNRFTGVIPS----------SVCQLPNLQNFT  237 (595)
Q Consensus       198 ~lP-~~l~~L~~L~~L~Ls~N~Lsg~iP~----------~l~~l~~L~~L~  237 (595)
                      ... +.|..|.+|++|+|++|.++.....          .+..|.+|+.||
T Consensus       130 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            211 3567777788888888776543221          256678888876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=6.8e-13  Score=121.12  Aligned_cols=105  Identities=18%  Similarity=0.234  Sum_probs=86.1

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCC-cCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEcc
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSN-RFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLR   96 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N-~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs   96 (595)
                      .+.++++++++.. ++..|..+++|++|+|++| .|+.+...+|.+|.+|++|+|++|+|+.+..++|.++.+|++|||+
T Consensus        10 ~~~l~c~~~~~~~-~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSCCCT-TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCCCcc-CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            3468889988876 4567889999999999876 4888778889999999999999999998888899999999999999


Q ss_pred             CCCCCCCCCccccc-cCCCeeeccCCccc
Q 007628           97 FNEFEGSVPSKLFD-KDLDAIFLNDNRFQ  124 (595)
Q Consensus        97 ~N~l~g~ip~~l~~-~~L~~L~L~~N~l~  124 (595)
                      +|+|+ .++..++. ..|++|+|++|.|.
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCccc
Confidence            99998 55554443 45666666666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.35  E-value=4e-15  Score=141.66  Aligned_cols=153  Identities=15%  Similarity=0.212  Sum_probs=104.1

Q ss_pred             CCCceeEEEccCCC--CCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCC
Q 007628           14 SLRVVASIDLNHAD--IAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLK   91 (595)
Q Consensus        14 ~l~~L~~LdLs~n~--i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~   91 (595)
                      ....++.++|.++.  |. .+...|..|.+|++|+|++|+|+.+  +.|.+|.+|++|+|++|+|+ .+...+..+.+|+
T Consensus        21 ~~~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~   96 (198)
T d1m9la_          21 VATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLE   96 (198)
T ss_dssp             CCTTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCC
T ss_pred             cccccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc--ccccCCccccChhhcccccc-ccccccccccccc
Confidence            34456677777652  33 3567899999999999999999964  36999999999999999998 4555555667899


Q ss_pred             EEEccCCCCCCCCCccccccCCCeeeccCCccccCCCcccCCCCceeEEeeccCCCCCcCcccccccchhhHHHhhcccc
Q 007628           92 YLDLRFNEFEGSVPSKLFDKDLDAIFLNDNRFQFGIPENLGNSPVSVLVFANNDLGGCIPGSIGKMGKTLNEIILMNDNL  171 (595)
Q Consensus        92 ~LdLs~N~l~g~ip~~l~~~~L~~L~L~~N~l~~~~p~~l~~~~L~~L~L~~N~l~~~ip~~l~~l~~~L~~L~Ls~N~l  171 (595)
                      +|+|++|+|+. +.......+|++|+|++|+++                       .            +..+       
T Consensus        97 ~L~l~~N~i~~-l~~~~~l~~L~~L~L~~N~i~-----------------------~------------~~~~-------  133 (198)
T d1m9la_          97 ELWISYNQIAS-LSGIEKLVNLRVLYMSNNKIT-----------------------N------------WGEI-------  133 (198)
T ss_dssp             EEECSEEECCC-HHHHHHHHHSSEEEESEEECC-----------------------C------------HHHH-------
T ss_pred             ccccccccccc-cccccccccccccccccchhc-----------------------c------------cccc-------
Confidence            99999999983 322111144444444444432                       1            1111       


Q ss_pred             CCCCCCccCCCccceEEeccCccccCCCCCC----------cCCCCCccEEEccCCcCC
Q 007628          172 TGCLPPQIGMLKNLTVFDVSFNHLQGSLPSS----------IGNMKSLEQLNVAHNRFT  220 (595)
Q Consensus       172 ~g~ip~~~~~L~~L~~LdLs~N~L~g~lP~~----------l~~L~~L~~L~Ls~N~Ls  220 (595)
                           ..|..|.+|++|+|++|.+.......          +..|.+|+.||  +..++
T Consensus       134 -----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         134 -----DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             -----HHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             -----ccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence                 13456788999999999876443332          45678888876  44443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=8e-12  Score=113.83  Aligned_cols=99  Identities=20%  Similarity=0.219  Sum_probs=83.9

Q ss_pred             ceecccCC-----CCCCCCCceeEEEccCC-CCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCc
Q 007628            2 GVFCARSP-----FNSPSLRVVASIDLNHA-DIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNR   75 (595)
Q Consensus         2 gv~C~~~~-----~~~~~l~~L~~LdLs~n-~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~   75 (595)
                      +|+|....     .++.++.+|+.|+|++| .|+.+...+|.+|.+|+.|+|++|+|+.+...+|.++.+|++|+|++|+
T Consensus        12 ~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             eEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC
Confidence            46666432     34567889999999876 4898888899999999999999999999889999999999999999999


Q ss_pred             CCCcCchhcCCCCCCCEEEccCCCCC
Q 007628           76 FVGKFPKLFLSLPKLKYLDLRFNEFE  101 (595)
Q Consensus        76 Lsg~lp~~l~~L~~L~~LdLs~N~l~  101 (595)
                      |+.+-.+.|..+ +|++|+|++|.|.
T Consensus        92 l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          92 LESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             CcccChhhhccc-cccccccCCCccc
Confidence            995555556554 7999999999996

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.5e-09  Score=95.06  Aligned_cols=101  Identities=20%  Similarity=0.211  Sum_probs=58.5

Q ss_pred             eeEEEccCCCCCCCCchhhcCCCCCcEEEccCCcCCCCCchhhcCCCCCCEEeccCCcCCCc--CchhcCCCCCCCEEEc
Q 007628           18 VASIDLNHADIAGYLPPEIGRLTDLAIFHINSNRFCGVVPSTFRRLKLLYEVDLSNNRFVGK--FPKLFLSLPKLKYLDL   95 (595)
Q Consensus        18 L~~LdLs~n~i~~~lp~~~~~L~~L~~L~Ls~N~l~~~lp~~~~~L~~L~~L~Ls~N~Lsg~--lp~~l~~L~~L~~LdL   95 (595)
                      ++.|||++.....    .+..+..+..|++.++.+. .+...+.++.+|++|+|++|+|+..  +...+..|.+|++|||
T Consensus        24 ~~~Ldls~l~~~~----~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L   98 (162)
T d1koha1          24 QQALDLKGLRSDP----DLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL   98 (162)
T ss_dssp             SCCBCCCCCSSCT----TTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC
T ss_pred             hCeeecccCCCCc----hhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccc
Confidence            4556666554322    2334444444444444333 3444556788888888888888754  2345667888888888


Q ss_pred             cCCCCCCCCCccccc--cCCCeeeccCCccc
Q 007628           96 RFNEFEGSVPSKLFD--KDLDAIFLNDNRFQ  124 (595)
Q Consensus        96 s~N~l~g~ip~~l~~--~~L~~L~L~~N~l~  124 (595)
                      ++|+|+ .+....+.  .+|+.|+|.+|.+.
T Consensus        99 s~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          99 SGNELK-SERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             TTSCCC-CGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             ccCccc-cchhhhhhhccccceeecCCCCcC
Confidence            888887 33332211  34555565555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.3e-07  Score=85.75  Aligned_cols=73  Identities=18%  Similarity=0.129  Sum_probs=58.0

Q ss_pred             chhhcCCCCCcEEEccCCcCCCC--CchhhcCCCCCCEEeccCCcCCCcCchhcCCCCCCCEEEccCCCCCCCCC
Q 007628           33 PPEIGRLTDLAIFHINSNRFCGV--VPSTFRRLKLLYEVDLSNNRFVGKFPKLFLSLPKLKYLDLRFNEFEGSVP  105 (595)
Q Consensus        33 p~~~~~L~~L~~L~Ls~N~l~~~--lp~~~~~L~~L~~L~Ls~N~Lsg~lp~~l~~L~~L~~LdLs~N~l~g~ip  105 (595)
                      ...+.++.+|++|+|++|+|+.+  +...+.+|.+|++|||++|+|+......+.+..+|++|+|++|.|.+.+.
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            33446789999999999999975  34567889999999999999996544344455679999999999986554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.10  E-value=1.2e-06  Score=79.52  Aligned_cols=86  Identities=7%  Similarity=0.061  Sum_probs=61.0

Q ss_pred             CceeEEEccCC-CCCCC----CchhhcCCCCCcEEEccCCcCCC----CCchhhcCCCCCCEEeccCCcCCCc----Cch
Q 007628           16 RVVASIDLNHA-DIAGY----LPPEIGRLTDLAIFHINSNRFCG----VVPSTFRRLKLLYEVDLSNNRFVGK----FPK   82 (595)
Q Consensus        16 ~~L~~LdLs~n-~i~~~----lp~~~~~L~~L~~L~Ls~N~l~~----~lp~~~~~L~~L~~L~Ls~N~Lsg~----lp~   82 (595)
                      ..|+.|+|+++ .|...    +...+.....|+.|+|++|.|..    .+.+.|.....|++|+|++|.|+..    +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            56888888864 45532    33456677788888888888864    2334556678888888888888742    344


Q ss_pred             hcCCCCCCCEEEccCCCCC
Q 007628           83 LFLSLPKLKYLDLRFNEFE  101 (595)
Q Consensus        83 ~l~~L~~L~~LdLs~N~l~  101 (595)
                      .|.....|++|+|++|++.
T Consensus        95 aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSC
T ss_pred             HHHhCCcCCEEECCCCcCC
Confidence            6677778888888888765

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.91  E-value=7.6e-07  Score=80.87  Aligned_cols=89  Identities=18%  Similarity=0.194  Sum_probs=63.3

Q ss_pred             hcCCCCCcEEEccCC-cCCCC----CchhhcCCCCCCEEeccCCcCCC----cCchhcCCCCCCCEEEccCCCCCCCCCc
Q 007628           36 IGRLTDLAIFHINSN-RFCGV----VPSTFRRLKLLYEVDLSNNRFVG----KFPKLFLSLPKLKYLDLRFNEFEGSVPS  106 (595)
Q Consensus        36 ~~~L~~L~~L~Ls~N-~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg----~lp~~l~~L~~L~~LdLs~N~l~g~ip~  106 (595)
                      ..+..+|++|+|+++ .|...    +-..|....+|++|+|++|.|..    .+.+.|...+.|++|+|++|.|++..-.
T Consensus        11 ~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          11 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            345688999999975 46543    44457788999999999999873    3345566678899999999998853332


Q ss_pred             cccc-----cCCCeeeccCCccc
Q 007628          107 KLFD-----KDLDAIFLNDNRFQ  124 (595)
Q Consensus       107 ~l~~-----~~L~~L~L~~N~l~  124 (595)
                      .++.     ..|++|+|++|++.
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCC
Confidence            2222     45777777776544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.71  E-value=3.6e-06  Score=75.93  Aligned_cols=86  Identities=15%  Similarity=0.145  Sum_probs=48.2

Q ss_pred             CceeEEEccC-CCCCCC----CchhhcCCCCCcEEEccCCcCCCC----CchhhcCCCCCCEEeccCCcCCCc----Cch
Q 007628           16 RVVASIDLNH-ADIAGY----LPPEIGRLTDLAIFHINSNRFCGV----VPSTFRRLKLLYEVDLSNNRFVGK----FPK   82 (595)
Q Consensus        16 ~~L~~LdLs~-n~i~~~----lp~~~~~L~~L~~L~Ls~N~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~----lp~   82 (595)
                      ..|+.|+|++ ++|+..    +...+.+..+|++|+|++|.|...    +.+.|....+|+.|++++|.+...    +-.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            4566777765 345432    233344566677777777766543    333445566777777777766522    234


Q ss_pred             hcCCCCCCCEEEcc--CCCCC
Q 007628           83 LFLSLPKLKYLDLR--FNEFE  101 (595)
Q Consensus        83 ~l~~L~~L~~LdLs--~N~l~  101 (595)
                      .+....+|+.|+|+  +|.|.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHhCccccEEeeccCCCcCc
Confidence            45556666665443  34443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.58  E-value=2.2e-06  Score=77.43  Aligned_cols=114  Identities=12%  Similarity=0.116  Sum_probs=72.4

Q ss_pred             CchhhcCCCCCcEEEccC-CcCCCC----CchhhcCCCCCCEEeccCCcCCCc----CchhcCCCCCCCEEEccCCCCCC
Q 007628           32 LPPEIGRLTDLAIFHINS-NRFCGV----VPSTFRRLKLLYEVDLSNNRFVGK----FPKLFLSLPKLKYLDLRFNEFEG  102 (595)
Q Consensus        32 lp~~~~~L~~L~~L~Ls~-N~l~~~----lp~~~~~L~~L~~L~Ls~N~Lsg~----lp~~l~~L~~L~~LdLs~N~l~g  102 (595)
                      +.....+..+|++|+|++ +.|+..    +-.+|..+.+|++|+|++|+|+..    +-+.+....+|+.|++++|.+..
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            344456778999999998 457643    344566889999999999998743    34456677899999999999874


Q ss_pred             CCCccccc-----cCCCeeecc--CCccccCCCccc-----CCCCceeEEeeccC
Q 007628          103 SVPSKLFD-----KDLDAIFLN--DNRFQFGIPENL-----GNSPVSVLVFANND  145 (595)
Q Consensus       103 ~ip~~l~~-----~~L~~L~L~--~N~l~~~~p~~l-----~~~~L~~L~L~~N~  145 (595)
                      ..-..++.     ..|+.++|+  +|.+.......+     .+..|+.|+|..+.
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             hhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            43322222     456654443  444432221122     23556666665543