Citrus Sinensis ID: 007665

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590----
MATDHQSNGHCQCCSFLLQVLRGRWFMMFASFLIMAGAGATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGANVGVLSGLLAEVTPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFPESRGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILLIAWLPALVSLVFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSAIAVCIFVFLPLFIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEILEIESDHSQTLQTENKKQEPDQTPCCGNIFKPPKRGEDYGILQALLSIDMLILFLATFCGLGCSLTAIDNLGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVGDVLIAFPKPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVMRTRRYYSGDIYKKFKEQIAAANEKKMAAKQNVSGNT
ccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHccHHcHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHcHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHccccEEEccHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
ccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHcccHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHEEEHHHHHHccccHHHHHHHHHHHHcccccccccEEEEHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHcccccHEEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccc
matdhqsnghcqccSFLLQVLRGRWFMMFASFLIMAGAGATYLFGTYSKEIkstlgydqtTLNLLSTCKDLGANVGVLSGllaevtppWLVLLVGSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYICIGansqnfantgSLVTCVknfpesrgMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILLIAWLPALVSLVFVYTirplkvsshpnelKVFYEYLYITISLALCLMGLTIaqkqahfphvgyiGSAIAVCIFVFLPLFIAFREEFAAWQqrkqptpasAVVIVFEQTTLVATKSEILEIESDHsqtlqtenkkqepdqtpccgnifkppkrgedYGILQALLSIDMLILFLATFCGLGCSLTAIDNLgqigeslgypqhtINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVGDVliafpkpgsVYVASLLVGFSYGAQLTLLFIIISELFGLKyystlfncgqlasplgsyVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVMRTRRYYSGDIYKKFKEQIAAANEKKMAAKQNVSGNT
matdhqsnghcqCCSFLLQVLRGRWFMMFASFLIMAGAGATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGANVGVLSGLLAEVTPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFPESRGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILLIAWLPALVSLVFVYTIRPlkvsshpneLKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSAIAVCIFVFLPLFIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEILEIESDHSQTLQtenkkqepdqtpcCGNIFKPPKRGEDYGILQALLSIDMLILFLATFCGLGCSLTAIDNLGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVGDVLIAFPKPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVMRTRRYYSGDIYKKFKEQIAAANEKkmaakqnvsgnt
MATDHQSNGHCQCCSFLLQVLRGRWFMMFASFLIMAGAGATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGANVGVLSGLLAEVTPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFPESRGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILLIAWLPALVSLVFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSAIAVCIFVFLPLFIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEILEIESDHSQTLQTENKKQEPDQTPCCGNIFKPPKRGEDYGILQALLSIDMLILFLATFCGLGCSLTAIDNLGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVGDVLIAFPKPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVMRTRRYYSGDIYKKFKEQIAAANEKKMAAKQNVSGNT
*********HCQCCSFLLQVLRGRWFMMFASFLIMAGAGATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGANVGVLSGLLAEVTPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFPESRGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILLIAWLPALVSLVFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSAIAVCIFVFLPLFIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEIL***********************CCGNIFKPPKRGEDYGILQALLSIDMLILFLATFCGLGCSLTAIDNLGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVGDVLIAFPKPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVMRTRRYYSGDIYKKFKEQI******************
**************SFLLQVLRGRWFMMFASFLIMAGAGATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGANVGVLSGLLAEVTPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFPESRGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILLIAWLPALVSLVFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSAIAVCIFVFLPLFIAFREEFAAWQQRK*********************************************************KRGEDYGILQALLSIDMLILFLATFCGLGCSLTAIDNLGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVGDVLIAFPKPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRLYDREAMKQLAEKG*TRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVMRTRRYYS*****************************
*********HCQCCSFLLQVLRGRWFMMFASFLIMAGAGATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGANVGVLSGLLAEVTPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFPESRGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILLIAWLPALVSLVFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSAIAVCIFVFLPLFIAFREEFAA********PASAVVIVFEQTTLVATKSEILEIES*****************TPCCGNIFKPPKRGEDYGILQALLSIDMLILFLATFCGLGCSLTAIDNLGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVGDVLIAFPKPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVMRTRRYYSGDIYKKFKEQIAAAN**************
*********HCQCCSFLLQVLRGRWFMMFASFLIMAGAGATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGANVGVLSGLLAEVTPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFPESRGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILLIAWLPALVSLVFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSAIAVCIFVFLPLFIAFREEFAAWQ**************************************************PCCGNIFKPPKRGEDYGILQALLSIDMLILFLATFCGLGCSLTAIDNLGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVGDVLIAFPKPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRLYDREAMKQLAEKGMTR*MVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVMRTRRYYSGDIYKKFK*********************
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MATDHQSNGHCQCCSFLLQVLRGRWFMMFASFLIMAGAGATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGANVGVLSGLLAEVTPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFPESRGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILLIAWLPALVSLVFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSAIAVCIFVFLPLFIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEILEIESDHSQTLQTENKKQEPDQTPCCGNIFKPPKRGEDYGILQALLSIDMLILFLATFCGLGCSLTAIDNLGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLILSAVGDVLIAFPKPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVMRTRRYYSGDIxxxxxxxxxxxxxxxxxxxxxVSGNT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query594 2.2.26 [Sep-21-2011]
Q6CGU8486 Probable transporter MCH1 yes no 0.360 0.440 0.233 3e-07
Q96TW9489 Probable transporter MCH1 N/A no 0.313 0.380 0.222 0.0002
>sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1 Back     alignment and function desciption
 Score = 57.4 bits (137), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 56/240 (23%), Positives = 112/240 (46%), Gaps = 26/240 (10%)

Query: 312 SQTLQTENKKQEPDQTPCCGNIFKPPKRGEDYGILQALLSIDMLILFLATFCGLGCSLTA 371
           ++++ +E +K+    T C  N   P   G +   L+   +     LFL  F  +G     
Sbjct: 236 AESMASELRKKAEASTDC--NCDGP---GHEGATLKEFFTDKTAWLFLLCFVFIGGPFEM 290

Query: 372 I-DNLGQIGESL---GYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMA 427
             +N+G I +++        + +T VSL + ++   R+  GF SE   ++  V RP++++
Sbjct: 291 FQNNMGAILDTVTVENADSPSFSTHVSLFATFSTVSRLVVGFSSEA--MESHVSRPVLLS 348

Query: 428 ISLILSAV------GDVLIAFPKPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYST 481
           +  +++A         +   F       V +++ GFSYG+  TL+  I+++++G+    T
Sbjct: 349 VIALVAACIHLMVPSGIFTVFDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLGT 408

Query: 482 LFNCGQLASPLGSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTI 541
           ++    LA  +GS     ++  ++YD  A  ++    M++       C G  CY L+F I
Sbjct: 409 IWGSFILALAVGSLGYG-LLFAKVYD--AASEVGVGSMSQ------VCSGVHCYGLTFVI 459
Probable transporter.
Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)
>sp|Q96TW9|MCH1_HANAN Probable transporter MCH1 OS=Hansenula anomala GN=MCH1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query594
297826137573 nodulin family protein [Arabidopsis lyra 0.956 0.991 0.651 0.0
15226338577 major facilitator protein [Arabidopsis t 0.946 0.974 0.657 0.0
224118316559 predicted protein [Populus trichocarpa] 0.924 0.982 0.667 0.0
224104707559 predicted protein [Populus trichocarpa] 0.925 0.983 0.663 0.0
449459092594 PREDICTED: uncharacterized protein LOC10 0.947 0.947 0.633 0.0
359486869595 PREDICTED: uncharacterized protein LOC10 0.946 0.944 0.626 0.0
255565443558 conserved hypothetical protein [Ricinus 0.927 0.987 0.655 0.0
449529184594 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.947 0.947 0.629 0.0
359479437588 PREDICTED: uncharacterized protein LOC10 0.976 0.986 0.628 0.0
147781721561 hypothetical protein VITISV_016339 [Viti 0.888 0.941 0.632 0.0
>gi|297826137|ref|XP_002880951.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297326790|gb|EFH57210.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/579 (65%), Positives = 452/579 (78%), Gaps = 11/579 (1%)

Query: 9   GHCQCCSFLLQVLRGRWFMMFASFLIMAGAGATYLFGTYSKEIKSTLGYDQTTLNLLSTC 68
           G+ +   FL+    GRWFM+FASFLIMA AGATYLFGTYSK+IKSTLGYDQTTLNLL   
Sbjct: 2   GNDETVRFLIHFFNGRWFMVFASFLIMACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFF 61

Query: 69  KDLGANVGVLSGLLAEVTPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYICI 128
           KDLGANVGVLSGL+AEVTP W VL +GSAMNF GYFMIWL V  K+AKPKVWQMCLYICI
Sbjct: 62  KDLGANVGVLSGLIAEVTPTWFVLTIGSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICI 121

Query: 129 GANSQNFANTGSLVTCVKNFPESRGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILL 188
           GANSQNFANTG+LVTCVKNFPESRG+MLGL+KG+VGLSGA+ TQ+Y AIYG+D+KS+ILL
Sbjct: 122 GANSQNFANTGALVTCVKNFPESRGVMLGLLKGYVGLSGAILTQLYFAIYGHDSKSLILL 181

Query: 189 IAWLPALVSLVFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHV 248
           IAWLPA VSLVFVY IR  KV    NEL VFY++LYI+I LAL LM + IA+KQ HF   
Sbjct: 182 IAWLPAAVSLVFVYLIREKKVVRQRNELSVFYQFLYISIFLALFLMAMNIAEKQVHFSKA 241

Query: 249 GYIGSAIAVCIFVFLPLFIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEILEIE 308
            Y  SA   C+ +F+PL ++ ++E   W  +K P          E+ + V  +    E++
Sbjct: 242 AYAASATICCVLLFVPLTVSVKQEIEVWNMKKLP---------IEEPSEVKVEKPKKELD 292

Query: 309 SDHSQTLQTENKKQEPDQTPCCGNIFKPPKRGEDYGILQALLSIDMLILFLATFCGLGCS 368
               +T + + +++E     C   +F PP RGEDY ILQALLS DM+ILF+ATFCGLG S
Sbjct: 293 LVQDKTAKVDGEEKETKS--CFLTVFSPPPRGEDYTILQALLSTDMIILFVATFCGLGSS 350

Query: 369 LTAIDNLGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAI 428
           LTA+DNLGQIGESLGYP HT+++FVSLVSIWNYFGRVF+GFVSE +L KYK+PRPL+M +
Sbjct: 351 LTAVDNLGQIGESLGYPNHTVSSFVSLVSIWNYFGRVFSGFVSEYLLAKYKLPRPLMMTL 410

Query: 429 SLILSAVGDVLIAFPKPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQL 488
            L+LS  G +LIAFP PGSVY+AS+L+GFS+GAQL LLF IISELFGLKYYSTLFNCGQL
Sbjct: 411 VLLLSCAGHLLIAFPVPGSVYIASILMGFSFGAQLPLLFAIISELFGLKYYSTLFNCGQL 470

Query: 489 ASPLGSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIF 548
           ASPLGSY+LNV V G LYDREA+KQL  +G+TR  VKDLTC+G QCY+L F ILA V  F
Sbjct: 471 ASPLGSYILNVRVTGMLYDREALKQLTARGLTRKDVKDLTCLGSQCYKLPFVILAAVTFF 530

Query: 549 GALITFILVMRTRRYYSGDIYKKFKEQIAAANEKKMAAK 587
           GAL++  L +RTR +Y GDIYKKF+E   + ++ + A +
Sbjct: 531 GALVSLGLAIRTREFYKGDIYKKFRESTESESDSRKAVE 569

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|15226338|ref|NP_180379.1| major facilitator protein [Arabidopsis thaliana] gi|4063746|gb|AAC98454.1| nodulin-like protein [Arabidopsis thaliana] gi|16209714|gb|AAL14413.1| At2g28120/F24D13.9 [Arabidopsis thaliana] gi|17064922|gb|AAL32615.1| nodulin-like protein [Arabidopsis thaliana] gi|20259958|gb|AAM13326.1| nodulin-like protein [Arabidopsis thaliana] gi|330252988|gb|AEC08082.1| major facilitator protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224118316|ref|XP_002331452.1| predicted protein [Populus trichocarpa] gi|118486602|gb|ABK95139.1| unknown [Populus trichocarpa] gi|222873530|gb|EEF10661.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224104707|ref|XP_002313536.1| predicted protein [Populus trichocarpa] gi|222849944|gb|EEE87491.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449459092|ref|XP_004147280.1| PREDICTED: uncharacterized protein LOC101217765 [Cucumis sativus] Back     alignment and taxonomy information
>gi|359486869|ref|XP_002272443.2| PREDICTED: uncharacterized protein LOC100242799 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255565443|ref|XP_002523712.1| conserved hypothetical protein [Ricinus communis] gi|223537016|gb|EEF38652.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449529184|ref|XP_004171581.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101217765 [Cucumis sativus] Back     alignment and taxonomy information
>gi|359479437|ref|XP_003632273.1| PREDICTED: uncharacterized protein LOC100244770 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147781721|emb|CAN72050.1| hypothetical protein VITISV_016339 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query594
TAIR|locus:2046238577 AT2G28120 [Arabidopsis thalian 0.946 0.974 0.664 4.4e-203
TAIR|locus:2056103601 AT2G39210 "AT2G39210" [Arabido 0.947 0.936 0.583 2.5e-177
TAIR|locus:2078643584 AT3G01930 [Arabidopsis thalian 0.488 0.496 0.348 5.6e-88
TAIR|locus:2159752540 AT5G50520 [Arabidopsis thalian 0.468 0.514 0.346 1.5e-85
TAIR|locus:2832385540 AT5G50630 [Arabidopsis thalian 0.468 0.514 0.346 1.5e-85
TAIR|locus:2174683579 AT5G14120 [Arabidopsis thalian 0.917 0.941 0.347 3e-85
TAIR|locus:2040809525 AT2G34350 [Arabidopsis thalian 0.367 0.415 0.391 2.8e-80
TAIR|locus:2116855567 AT4G34950 [Arabidopsis thalian 0.907 0.950 0.322 3.4e-77
TAIR|locus:2059829546 AT2G16660 [Arabidopsis thalian 0.786 0.855 0.346 5.1e-74
TAIR|locus:2198938561 AT1G80530 "AT1G80530" [Arabido 0.873 0.925 0.312 4.7e-64
TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1965 (696.8 bits), Expect = 4.4e-203, P = 4.4e-203
 Identities = 381/573 (66%), Positives = 450/573 (78%)

Query:     9 GHCQCCSFLLQVLRGRWFMMFASFLIMAGAGATYLFGTYSKEIKSTLGYDQTTLNLLSTC 68
             G+ +   FL+    GRWFM+FASFLIMA AGATYLFGTYSK+IKSTLGYDQTTLNLL   
Sbjct:     2 GNDETVRFLIHFFNGRWFMVFASFLIMACAGATYLFGTYSKDIKSTLGYDQTTLNLLGFF 61

Query:    69 KDLGANVGVLSGLLAEVTPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYICI 128
             KDLGANVGVLSGL+AEVTP W VL +GSAMNF GYFMIWL V  K+AKPKVWQMCLYICI
Sbjct:    62 KDLGANVGVLSGLIAEVTPTWFVLTIGSAMNFVGYFMIWLTVTGKVAKPKVWQMCLYICI 121

Query:   129 GANSQNFANTGSLVTCVKNFPESRGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILL 188
             GANSQNFANTG+LVTCVKNFPESRG+MLGL+KG+VGLSGA+FTQ+Y AIYG+D+KS+ILL
Sbjct:   122 GANSQNFANTGALVTCVKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILL 181

Query:   189 IAWLPALVSLVFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHV 248
             IAWLPA VSLVFVY IR  KV    NEL VFY++LYI+I LAL LM + IA+KQ HF   
Sbjct:   182 IAWLPAAVSLVFVYLIREKKVVRQRNELSVFYQFLYISIFLALFLMAMNIAEKQVHFSKA 241

Query:   249 GYIGSAIAVCIFVFLPLFIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEILEIE 308
              Y  SA   C  +F+PL ++ ++E   W   K P    + V V E+      K E L+++
Sbjct:   242 AYAASATICCALLFVPLTVSVKQELEVWNMMKLPIEEPSEVKV-EKP-----KKE-LDLD 294

Query:   309 SDHSQTLQTENKKQEPDQTPCCGNIFKPPKRGEDYGILQALLSIDMLILFLATFCGLGCS 368
              D +  +  E K+ +     C   +F PP RGEDY ILQALLS DM+ILF+ATFCGLG S
Sbjct:   295 QDKAAKVNGEEKETKS----CFSTVFSPPPRGEDYTILQALLSTDMIILFVATFCGLGSS 350

Query:   369 LTAIDNLGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAI 428
             LTA+DNLGQIGESLGYP HT+++FVSLVSIWNYFGRVF+GFVSE +L KYK+PRPL+M +
Sbjct:   351 LTAVDNLGQIGESLGYPNHTVSSFVSLVSIWNYFGRVFSGFVSEYLLAKYKLPRPLMMTL 410

Query:   429 SLILSAVGDVLIAFPKPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQL 488
              L+LS  G +LIAFP PGSVY+AS+L+GFS+GAQL LLF IISELFGLKYYSTLFNCGQL
Sbjct:   411 VLLLSCAGHLLIAFPVPGSVYIASILMGFSFGAQLPLLFAIISELFGLKYYSTLFNCGQL 470

Query:   489 ASPLGSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIF 548
             ASPLGSY+LNV V G LYD+EA+KQL  +G+TR  VKDLTC+G QCY+L F ILA V  F
Sbjct:   471 ASPLGSYILNVRVTGMLYDKEALKQLTARGLTRKDVKDLTCLGSQCYKLPFLILAAVTFF 530

Query:   549 GALITFILVMRTRRYYSGDIYKKFKEQIAAANE 581
             GAL++  L +RTR +Y GDIYKKF+E   + +E
Sbjct:   531 GALVSLGLAIRTREFYKGDIYKKFRESPESESE 563
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.4__757__AT2G28120.1
annotation not avaliable (573 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query594
pfam06813248 pfam06813, Nodulin-like, Nodulin-like 1e-105
TIGR00890377 TIGR00890, 2A0111, oxalate/formate antiporter fami 3e-11
cd06174 352 cd06174, MFS, The Major Facilitator Superfamily (M 0.001
PTZ00207591 PTZ00207, PTZ00207, hypothetical protein; Provisio 0.004
>gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like Back     alignment and domain information 
 Score =  316 bits (813), Expect = e-105
 Identities = 116/248 (46%), Positives = 158/248 (63%), Gaps = 2/248 (0%)

Query: 24  RWFMMFASFLIMAGAGATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGANVGVLSGLLA 83
           RW  + A+  I + AGA Y F  YS  +KS+LGY Q  LNLL   KDLG N G LSGL A
Sbjct: 1   RWLGLVAAIWIQSFAGANYDFSLYSSALKSSLGYSQVQLNLLGVAKDLGKNFGWLSGLAA 60

Query: 84  EVTPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVT 143
           E  PPW+VLLVG+AM F GY + WLAV  KI     W +CL IC+  NS  + NT SLVT
Sbjct: 61  EYLPPWVVLLVGAAMGFVGYGVQWLAVTGKIPGLPYWLLCLAICLAGNSICWFNTASLVT 120

Query: 144 CVKNFPESRGMMLGLMKGFVGLSGAVFTQIYLAIYGNDAKSMILLIAWLPALVSLVFVYT 203
           C++NFPESRG++LG++KG+ GLS A++TQ+Y AI+GNDA S++LL A +P +VSLV +Y 
Sbjct: 121 CIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYF 180

Query: 204 IR--PLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSAIAVCIFV 261
           IR  P KV    +E  VF  +  ++++LA+ L+ ++I  K        Y      + + +
Sbjct: 181 IRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLL 240

Query: 262 FLPLFIAF 269
            +PL +  
Sbjct: 241 LVPLAVPI 248

This family represents a conserved region within plant nodulin-like proteins. Length = 248
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 594
PTZ00207591 hypothetical protein; Provisional 100.0
TIGR00892455 2A0113 monocarboxylate transporter 1. 100.0
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 100.0
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 100.0
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 100.0
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 100.0
PRK11663434 regulatory protein UhpC; Provisional 100.0
PRK09705393 cynX putative cyanate transporter; Provisional 100.0
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.98
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 99.98
PRK14995495 methyl viologen resistance protein SmvA; Provision 99.97
PRK03545390 putative arabinose transporter; Provisional 99.97
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 99.97
PLN00028476 nitrate transmembrane transporter; Provisional 99.97
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 99.97
PRK12307426 putative sialic acid transporter; Provisional 99.97
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 99.97
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.97
PRK03699394 putative transporter; Provisional 99.97
PRK10406432 alpha-ketoglutarate transporter; Provisional 99.97
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 99.97
TIGR00893399 2A0114 d-galactonate transporter. 99.97
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 99.97
PRK10642490 proline/glycine betaine transporter; Provisional 99.97
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 99.96
PRK10213394 nepI ribonucleoside transporter; Reviewed 99.96
PRK03893496 putative sialic acid transporter; Provisional 99.96
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.96
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 99.96
PRK10504471 putative transporter; Provisional 99.96
TIGR00891405 2A0112 putative sialic acid transporter. 99.96
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 99.96
PRK05122399 major facilitator superfamily transporter; Provisi 99.96
PRK10077479 xylE D-xylose transporter XylE; Provisional 99.96
PRK15075434 citrate-proton symporter; Provisional 99.96
PRK10133438 L-fucose transporter; Provisional 99.96
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 99.96
PRK03633381 putative MFS family transporter protein; Provision 99.95
PRK09952438 shikimate transporter; Provisional 99.95
TIGR00881379 2A0104 phosphoglycerate transporter family protein 99.95
PRK10091382 MFS transport protein AraJ; Provisional 99.95
PRK12382392 putative transporter; Provisional 99.95
TIGR00897402 2A0118 polyol permease family. This family of prot 99.95
PRK15402406 multidrug efflux system translocase MdfA; Provisio 99.95
TIGR00896355 CynX cyanate transporter. This family of proteins 99.95
PRK10489417 enterobactin exporter EntS; Provisional 99.95
TIGR00895398 2A0115 benzoate transport. 99.95
TIGR00900365 2A0121 H+ Antiporter protein. 99.94
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 99.94
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.94
TIGR00898505 2A0119 cation transport protein. 99.94
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 99.94
PRK11043401 putative transporter; Provisional 99.94
PRK11646400 multidrug resistance protein MdtH; Provisional 99.94
PRK09874408 drug efflux system protein MdtG; Provisional 99.94
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.93
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.93
COG2807395 CynX Cyanate permease [Inorganic ion transport and 99.93
PRK15403413 multidrug efflux system protein MdtM; Provisional 99.93
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.93
PRK10473392 multidrug efflux system protein MdtL; Provisional 99.93
KOG0569485 consensus Permease of the major facilitator superf 99.93
PRK10054395 putative transporter; Provisional 99.93
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.93
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 99.92
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.92
KOG2532466 consensus Permease of the major facilitator superf 99.92
PRK11195393 lysophospholipid transporter LplT; Provisional 99.92
PRK09528420 lacY galactoside permease; Reviewed 99.92
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 99.92
PRK11010491 ampG muropeptide transporter; Validated 99.92
PRK11652394 emrD multidrug resistance protein D; Provisional 99.92
PRK15011393 sugar efflux transporter B; Provisional 99.91
PF06609599 TRI12: Fungal trichothecene efflux pump (TRI12); I 99.91
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.91
COG0738422 FucP Fucose permease [Carbohydrate transport and m 99.91
PRK10207489 dipeptide/tripeptide permease B; Provisional 99.9
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.9
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 99.9
KOG2533495 consensus Permease of the major facilitator superf 99.9
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.9
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.9
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.89
KOG1330493 consensus Sugar transporter/spinster transmembrane 99.89
PRK11902402 ampG muropeptide transporter; Reviewed 99.88
TIGR00901356 2A0125 AmpG-related permease. 99.88
KOG0254513 consensus Predicted transporter (major facilitator 99.88
PRK09584500 tppB putative tripeptide transporter permease; Rev 99.86
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.86
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.86
KOG3764464 consensus Vesicular amine transporter [Intracellul 99.86
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 99.86
TIGR00805633 oat sodium-independent organic anion transporter. 99.85
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.85
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 99.84
TIGR00806511 rfc RFC reduced folate carrier. Proteins of the RF 99.84
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 99.83
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 99.83
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 99.79
KOG2563480 consensus Permease of the major facilitator superf 99.78
KOG2615451 consensus Permease of the major facilitator superf 99.77
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.76
PRK10429473 melibiose:sodium symporter; Provisional 99.75
TIGR00788468 fbt folate/biopterin transporter. The only functio 99.75
PRK09669444 putative symporter YagG; Provisional 99.74
PRK09848448 glucuronide transporter; Provisional 99.74
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.73
TIGR01272310 gluP glucose/galactose transporter. Disruption of 99.73
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 99.72
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 99.71
PRK15462493 dipeptide/tripeptide permease D; Provisional 99.7
PF13347428 MFS_2: MFS/sugar transport protein 99.67
COG2270438 Permeases of the major facilitator superfamily [Ge 99.62
PRK11462460 putative transporter; Provisional 99.62
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 99.59
COG2211467 MelB Na+/melibiose symporter and related transport 99.54
PF03137539 OATP: Organic Anion Transporter Polypeptide (OATP) 99.41
COG3104498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 99.4
COG2271 448 UhpC Sugar phosphate permease [Carbohydrate transp 99.37
COG2814 394 AraJ Arabinose efflux permease [Carbohydrate trans 99.34
TIGR00712 438 glpT glycerol-3-phosphate transporter. This model 99.33
PRK11663 434 regulatory protein UhpC; Provisional 99.33
TIGR00710 385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.32
PRK10504 471 putative transporter; Provisional 99.3
PF07690 352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.3
KOG2325488 consensus Predicted transporter/transmembrane prot 99.3
TIGR02332 412 HpaX 4-hydroxyphenylacetate permease. This protein 99.29
PRK10091 382 MFS transport protein AraJ; Provisional 99.29
TIGR00900 365 2A0121 H+ Antiporter protein. 99.29
PRK10054 395 putative transporter; Provisional 99.28
PRK10213 394 nepI ribonucleoside transporter; Reviewed 99.28
TIGR01299 742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.28
TIGR00893 399 2A0114 d-galactonate transporter. 99.28
PRK03545 390 putative arabinose transporter; Provisional 99.28
TIGR00895 398 2A0115 benzoate transport. 99.27
TIGR00924 475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.27
TIGR00881 379 2A0104 phosphoglycerate transporter family protein 99.25
PRK10473 392 multidrug efflux system protein MdtL; Provisional 99.25
TIGR00891 405 2A0112 putative sialic acid transporter. 99.24
TIGR00711 485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.22
PRK15403 413 multidrug efflux system protein MdtM; Provisional 99.2
PRK14995 495 methyl viologen resistance protein SmvA; Provision 99.2
PRK11273 452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.2
PRK09874 408 drug efflux system protein MdtG; Provisional 99.19
PRK09584 500 tppB putative tripeptide transporter permease; Rev 99.19
PRK11102 377 bicyclomycin/multidrug efflux system; Provisional 99.18
PRK15462 493 dipeptide/tripeptide permease D; Provisional 99.18
TIGR00903 368 2A0129 major facilitator 4 family protein. This fa 99.18
PRK11551 406 putative 3-hydroxyphenylpropionic transporter MhpT 99.18
PRK11652 394 emrD multidrug resistance protein D; Provisional 99.17
PRK03699 394 putative transporter; Provisional 99.17
PRK15402 406 multidrug efflux system translocase MdfA; Provisio 99.17
PRK09556 467 uhpT sugar phosphate antiporter; Reviewed 99.17
PRK11195 393 lysophospholipid transporter LplT; Provisional 99.17
PLN00028 476 nitrate transmembrane transporter; Provisional 99.16
PRK11646 400 multidrug resistance protein MdtH; Provisional 99.16
PRK15011393 sugar efflux transporter B; Provisional 99.16
PRK10489 417 enterobactin exporter EntS; Provisional 99.15
TIGR00890 377 2A0111 Oxalate/Formate Antiporter. 99.15
TIGR00897 402 2A0118 polyol permease family. This family of prot 99.15
PRK10642490 proline/glycine betaine transporter; Provisional 99.14
TIGR00879 481 SP MFS transporter, sugar porter (SP) family. This 99.14
TIGR00886 366 2A0108 nitrite extrusion protein (nitrite facilita 99.13
PRK12307 426 putative sialic acid transporter; Provisional 99.11
KOG2816463 consensus Predicted transporter ADD1 (major facili 99.11
cd06174 352 MFS The Major Facilitator Superfamily (MFS) is a l 99.11
PRK09705 393 cynX putative cyanate transporter; Provisional 99.11
PRK10207 489 dipeptide/tripeptide permease B; Provisional 99.1
PRK11043 401 putative transporter; Provisional 99.1
PRK15034 462 nitrate/nitrite transport protein NarU; Provisiona 99.1
PRK12382 392 putative transporter; Provisional 99.1
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.09
KOG3626735 consensus Organic anion transporter [Secondary met 99.09
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 99.08
PRK10077 479 xylE D-xylose transporter XylE; Provisional 99.08
PRK03893 496 putative sialic acid transporter; Provisional 99.07
PRK09528 420 lacY galactoside permease; Reviewed 99.06
KOG1330 493 consensus Sugar transporter/spinster transmembrane 99.05
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.04
PRK05122 399 major facilitator superfamily transporter; Provisi 99.03
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.03
TIGR00894 465 2A0114euk Na(+)-dependent inorganic phosphate cotr 99.03
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 99.02
TIGR00892 455 2A0113 monocarboxylate transporter 1. 99.02
PRK03633 381 putative MFS family transporter protein; Provision 99.01
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 99.0
TIGR00902382 2A0127 phenyl proprionate permease family protein. 98.99
TIGR00880141 2_A_01_02 Multidrug resistance protein. 98.99
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 98.98
TIGR00882 396 2A0105 oligosaccharide:H+ symporter. 98.98
KOG3764 464 consensus Vesicular amine transporter [Intracellul 98.96
PTZ00207 591 hypothetical protein; Provisional 98.92
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 98.92
TIGR00885 410 fucP L-fucose:H+ symporter permease. This family d 98.92
TIGR00896 355 CynX cyanate transporter. This family of proteins 98.9
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 98.88
PRK11010 491 ampG muropeptide transporter; Validated 98.86
TIGR00901 356 2A0125 AmpG-related permease. 98.85
TIGR00898 505 2A0119 cation transport protein. 98.85
PRK11902 402 ampG muropeptide transporter; Reviewed 98.84
TIGR00887 502 2A0109 phosphate:H+ symporter. This model represen 98.84
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 98.83
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 98.81
COG3104 498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 98.81
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 98.81
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 98.8
PRK09952438 shikimate transporter; Provisional 98.8
TIGR01301 477 GPH_sucrose GPH family sucrose/H+ symporter. This 98.78
PRK10133 438 L-fucose transporter; Provisional 98.78
PRK10406 432 alpha-ketoglutarate transporter; Provisional 98.77
KOG2615 451 consensus Permease of the major facilitator superf 98.74
KOG3098461 consensus Uncharacterized conserved protein [Funct 98.72
TIGR00805 633 oat sodium-independent organic anion transporter. 98.72
KOG2532 466 consensus Permease of the major facilitator superf 98.69
TIGR01272310 gluP glucose/galactose transporter. Disruption of 98.68
PRK15075 434 citrate-proton symporter; Provisional 98.68
KOG0255 521 consensus Synaptic vesicle transporter SVOP and re 98.65
KOG0254 513 consensus Predicted transporter (major facilitator 98.62
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 98.61
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 98.61
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 98.59
KOG2533 495 consensus Permease of the major facilitator superf 98.58
COG2270438 Permeases of the major facilitator superfamily [Ge 98.49
KOG2504 509 consensus Monocarboxylate transporter [Carbohydrat 98.47
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 98.42
KOG0569 485 consensus Permease of the major facilitator superf 98.39
PF13347428 MFS_2: MFS/sugar transport protein 98.33
KOG0252 538 consensus Inorganic phosphate transporter [Inorgan 98.29
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 98.27
COG2807 395 CynX Cyanate permease [Inorganic ion transport and 98.27
PRK09848448 glucuronide transporter; Provisional 98.25
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 98.19
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 98.19
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 98.18
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 98.18
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 98.18
PRK09669 444 putative symporter YagG; Provisional 98.16
KOG4332454 consensus Predicted sugar transporter [Carbohydrat 98.15
TIGR00788 468 fbt folate/biopterin transporter. The only functio 98.13
KOG2325 488 consensus Predicted transporter/transmembrane prot 98.12
COG0738 422 FucP Fucose permease [Carbohydrate transport and m 98.11
PRK10429 473 melibiose:sodium symporter; Provisional 98.1
PF00083 451 Sugar_tr: Sugar (and other) transporter; InterPro: 98.02
PF05631 354 DUF791: Protein of unknown function (DUF791); Inte 98.0
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 97.89
PRK11462 460 putative transporter; Provisional 97.88
TIGR00926654 2A1704 Peptide:H+ symporter (also transports b-lac 97.87
COG0477338 ProP Permeases of the major facilitator superfamil 97.86
COG2211 467 MelB Na+/melibiose symporter and related transport 97.83
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 97.79
TIGR00769472 AAA ADP/ATP carrier protein family. These proteins 97.77
PF03209 403 PUCC: PUCC protein; InterPro: IPR004896 This prote 97.68
KOG0637498 consensus Sucrose transporter and related proteins 97.67
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 97.65
KOG3810433 consensus Micronutrient transporters (folate trans 97.6
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 97.57
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 97.55
KOG2563 480 consensus Permease of the major facilitator superf 97.52
KOG3762618 consensus Predicted transporter [General function 97.5
KOG3762618 consensus Predicted transporter [General function 97.37
PF03137 539 OATP: Organic Anion Transporter Polypeptide (OATP) 97.34
KOG2816 463 consensus Predicted transporter ADD1 (major facili 97.19
KOG3574510 consensus Acetyl-CoA transporter [Inorganic ion tr 97.16
PF1283277 MFS_1_like: MFS_1 like family 97.14
PF1283277 MFS_1_like: MFS_1 like family 97.1
PF03092 433 BT1: BT1 family; InterPro: IPR004324 Members of th 96.98
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 96.79
PF13000544 Acatn: Acetyl-coenzyme A transporter 1; InterPro: 96.77
KOG1237571 consensus H+/oligopeptide symporter [Amino acid tr 96.59
KOG1479406 consensus Nucleoside transporter [Nucleotide trans 96.33
PRK03612 521 spermidine synthase; Provisional 96.22
COG0477338 ProP Permeases of the major facilitator superfamil 96.18
KOG0637 498 consensus Sucrose transporter and related proteins 95.78
KOG3626 735 consensus Organic anion transporter [Secondary met 95.38
PF01733309 Nucleoside_tran: Nucleoside transporter; InterPro: 94.92
PF00854 372 PTR2: POT family; InterPro: IPR000109 This entry r 94.88
PF03219491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 94.83
PRK03612521 spermidine synthase; Provisional 94.25
KOG3098461 consensus Uncharacterized conserved protein [Funct 93.68
PF01770 412 Folate_carrier: Reduced folate carrier; InterPro: 93.49
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 93.28
KOG3574 510 consensus Acetyl-CoA transporter [Inorganic ion tr 93.2
KOG4332 454 consensus Predicted sugar transporter [Carbohydrat 92.81
TIGR00769 472 AAA ADP/ATP carrier protein family. These proteins 92.35
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 91.82
PF00854372 PTR2: POT family; InterPro: IPR000109 This entry r 91.01
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 90.12
KOG1479 406 consensus Nucleoside transporter [Nucleotide trans 83.86
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.8e-49  Score=416.95  Aligned_cols=510  Identities=16%  Similarity=0.241  Sum_probs=403.6

Q ss_pred             HhhhHHHHHHHHHHHHhhhhhhchhhhHHHHHHHhCCCHhHHHHHHHHHhhhhhhhhhhhhhhcccCchHHHHHHHHHHH
Q 007665           21 LRGRWFMMFASFLIMAGAGATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGANVGVLSGLLAEVTPPWLVLLVGSAMNF  100 (594)
Q Consensus        21 ~~~~w~~~~~~~l~~~~~g~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~G~l~Dr~G~r~v~~~g~~l~~  100 (594)
                      ..+||.+++++++++.+.|..|.++.+.|++++++|+|.++++++.+.....++++++.|++.||+|||+++++|.+++.
T Consensus        23 e~~Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~  102 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC  102 (591)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999665555555677789999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCChhHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCCCceeehhHHHHHhhhhHHHHHHHHHHHHhCC
Q 007665          101 GGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFPESRGMMLGLMKGFVGLSGAVFTQIYLAIYGN  180 (594)
Q Consensus       101 ig~~l~~~a~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~fp~~rg~~~gi~~~~~glg~~i~~~l~~~l~~~  180 (594)
                      +|+++++++..+... ++++.++++|++.|+|.+..++.+..++.+|||++||+++|+..++.++|+++.+++...++.+
T Consensus       103 iG~ll~ala~~~~i~-~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~  181 (591)
T PTZ00207        103 LGTLLFALTFQEVIE-GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSD  181 (591)
T ss_pred             HHHHHHHHHhccccc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999887554443 4799999999999999999999999999999999999999999999999999999998888776


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhccCCCCCC--------CchhH-----------------HHHHHHHHHHHHHHHHHH
Q 007665          181 DAKSMILLIAWLPALVSLVFVYTIRPLKVSSH--------PNELK-----------------VFYEYLYITISLALCLMG  235 (594)
Q Consensus       181 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~-----------------~f~~~~~~~~~~~~~~~~  235 (594)
                      +++++++++++.+.+..++...+++.+|+.+.        .+++.                 .|.....+.+++++++.+
T Consensus       182 ~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~  261 (591)
T PTZ00207        182 NTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPL  261 (591)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHH
Confidence            67788888899898888888888888864321        12222                 455556677788888888


Q ss_pred             HhhhhcccCCCCccccchhhHHH-Hhhhhc-chhhhhhhhhhhhcCCCCCCCcccccccccchhhhhhhhhhhccccccc
Q 007665          236 LTIAQKQAHFPHVGYIGSAIAVC-IFVFLP-LFIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEILEIESDHSQ  313 (594)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (594)
                      ......+.+.++..+...+++++ +++++| +.++.+.... +.+   +.+++.     +       +      +++.++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~-~~~---~~~~~~-----~-------~------~~~~~~  319 (591)
T PTZ00207        262 QGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDG-KRP---HDDSDG-----K-------A------KEHVEA  319 (591)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhcc-CCc---CCCccc-----c-------c------cccccc
Confidence            88888888888887777777655 666777 6666654211 111   000000     0       0      000000


Q ss_pred             ccccccCCCCCCCCCcCCC-CCCCCCCCCCccHHHhhchHHHHHHHHHHHhhccccceeeccHHHHHHhc-CCCCCc--c
Q 007665          314 TLQTENKKQEPDQTPCCGN-IFKPPKRGEDYGILQALLSIDMLILFLATFCGLGCSLTAIDNLGQIGESL-GYPQHT--I  389 (594)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~--a  389 (594)
                      +.  +.  ++++......+ ....|+..  .++++.+++.+||++++.++|..+.+..+++|+.++.+++ |.+.++  .
T Consensus       320 ~~--~~--~~~~~~~~~~~~~~~~P~~~--~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~  393 (591)
T PTZ00207        320 GE--EV--SAAEDKVVETDVDYIAPQFQ--ETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALN  393 (591)
T ss_pred             cc--cc--cccccccccccccCCCCCCc--chHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccce
Confidence            00  00  00000000000 01223333  3889999999999999999999999999999999999999 874433  3


Q ss_pred             hhhHHHHhhhhhHhhhhhccccHHHhhhcc----CCchHHHHHHHHHHHHHHHHHhccCc-chHHHHHHHHHHHhhhhHH
Q 007665          390 NTFVSLVSIWNYFGRVFAGFVSEIILLKYK----VPRPLIMAISLILSAVGDVLIAFPKP-GSVYVASLLVGFSYGAQLT  464 (594)
Q Consensus       390 ~~~~~~~~i~~~~g~~~~g~l~dr~g~r~~----~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~l~G~~~g~~~~  464 (594)
                      ..+++++++++.+||+..|+++ .+-+|++    ++|...+.+..+ ++++.+++....+ ..+++..++.|+|+|..++
T Consensus       394 ~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~  471 (591)
T PTZ00207        394 TLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAA  471 (591)
T ss_pred             eeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHH
Confidence            3478999999999999999998 4444443    677777777777 6676666665555 7899999999999999999


Q ss_pred             HHHHHHHHhccCCccccccchhhccchhhhhhhhhhHHHhhhhHHHHHhhhhhhcccccCCCcccccccchHHHHHHHHH
Q 007665          465 LLFIIISELFGLKYYSTLFNCGQLASPLGSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAG  544 (594)
Q Consensus       465 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~~gp~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  544 (594)
                      +.+.+++|+|+ ++.|+.|.+..+...+|+++++-.++|.+||+++.++           .+..|.|..||+.+|+++++
T Consensus       472 ~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~-----------~~~~C~G~~C~~~~~~v~~~  539 (591)
T PTZ00207        472 TIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKL-----------GQDVCTERVCVVMPLAFLLG  539 (591)
T ss_pred             HHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhC-----------CCCeeCCceeeHhHHHHHHH
Confidence            99999999999 9999999999999999999998999999999976553           24589999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhccchhHHHHhH
Q 007665          545 VNIFGALITFILVMRTRRYYSGDIYKKFK  573 (594)
Q Consensus       545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  573 (594)
                      +|+.++++...+..|+|+.+++..+||++
T Consensus       540 ~~~~g~~~s~~l~~R~r~~y~~~~~~~~~  568 (591)
T PTZ00207        540 LSFLAFITSTYVHLQYRRLCLKALEERRR  568 (591)
T ss_pred             HHHHHHHHHhheeeehHHHHHHHHHHHHH
Confidence            99999999999999999998888877664

>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query594
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 81/500 (16%), Positives = 153/500 (30%), Gaps = 130/500 (26%)

Query: 17  LLQVLRGRWFMMFASFLIMAGAGATYLFGT--YSKEIKSTLGYDQTTLNLLSTCKDLGAN 74
           LL++   +  ++      + G+G T++      S +++  + +    LN L  C      
Sbjct: 144 LLELRPAKNVLIDG----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETV 198

Query: 75  VGVLSGLLAEVTPPWLVLLVGSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYI-------- 126
           + +L  LL ++ P W      S+ N         A ++++ K K ++ CL +        
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257

Query: 127 CIGANSQNFANTGS--LVT----CVKNFPESRGMMLGLMKGFVGLSGAVFTQIYLAIYG- 179
              A    F N     L+T     V +F                LS A  T I L  +  
Sbjct: 258 AWNA----F-NLSCKILLTTRFKQVTDF----------------LSAATTTHISLDHHSM 296

Query: 180 --NDAKSMILLIAWLPALVSLVFVYTIRPLKVSSHPNELKVFYEYLYITIS-LALCLMGL 236
                +   LL+ +L               +    P E+         T +   L ++  
Sbjct: 297 TLTPDEVKSLLLKYL-------------DCRPQDLPREVL--------TTNPRRLSIIAE 335

Query: 237 TIAQKQAH---FPHVGY--IGSAIAVCIFVFLP---------LFIAFREEF--------A 274
           +I    A    + HV    + + I   + V  P         L + F             
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHIPTILLSL 394

Query: 275 AWQQRKQPTPASAVVIVFEQTTLVA--TKSEILEIESDHSQTL----QTENKKQ------ 322
            W    +      VV    + +LV    K   + I    S  L    + EN+        
Sbjct: 395 IWFDVIKSDVMV-VVNKLHKYSLVEKQPKESTISI---PSIYLELKVKLENEYALHRSIV 450

Query: 323 EPDQTP---CCGNIFKPPKRGEDYGI-------LQALLSIDMLILFLATFCGLGCSLTAI 372
           +    P      ++  P      Y         L+ +   + + LF   F         +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQ--Y-FYSHIGHHLKNIEHPERMTLFRMVF----LDFRFL 503

Query: 373 DN-LGQIGESLGYPQHTINTFVSLVSIWNYFGRVFAGFVSEIILLKYKVPRPLIMAISLI 431
           +  +     +       +NT   L     Y       +   +  +   +P+      +LI
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI---EENLI 560

Query: 432 LSAVGDVL-IAF-PKPGSVY 449
            S   D+L IA   +  +++
Sbjct: 561 CSKYTDLLRIALMAEDEAIF 580

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query594
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 100.0
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 100.0
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 99.97
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 99.95
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 99.94
2cfq_A417 Lactose permease; transport, transport mechanism, 99.91
2xut_A524 Proton/peptide symporter family protein; transport 99.91
1pw4_A 451 Glycerol-3-phosphate transporter; transmembrane, i 99.44
4aps_A 491 DI-OR tripeptide H+ symporter; transport protein, 99.39
3o7q_A 438 L-fucose-proton symporter; transporter, multi-PASS 99.32
2gfp_A 375 EMRD, multidrug resistance protein D; membrane pro 99.22
2xut_A 524 Proton/peptide symporter family protein; transport 99.21
4gc0_A 491 D-xylose-proton symporter; MFS, transport protein; 98.86
2cfq_A 417 Lactose permease; transport, transport mechanism, 98.77
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
Probab=100.00  E-value=7.1e-34  Score=300.14  Aligned_cols=403  Identities=13%  Similarity=0.110  Sum_probs=282.8

Q ss_pred             HHHhhhHHHHHHHHHHHHhhh-hhhchhhhHHHHHHHhCCCHhHHHHHHHHHhhhh-hhhhhhhhhhcccCchHHHHHHH
Q 007665           19 QVLRGRWFMMFASFLIMAGAG-ATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGA-NVGVLSGLLAEVTPPWLVLLVGS   96 (594)
Q Consensus        19 ~~~~~~w~~~~~~~l~~~~~g-~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~v~~~g~   96 (594)
                      ...+.+|..+....+..+..+ ..+.++.+.|.+.+++ .+..+.+++.+.+.++. +..+++|+++||+|||++++++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           21 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence            334556666665555555544 5677888899999999 99999999766666665 56899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCC-CceeehhHHHHHhhhhHHHHHHHHHH
Q 007665           97 AMNFGGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFP-ESRGMMLGLMKGFVGLSGAVFTQIYL  175 (594)
Q Consensus        97 ~l~~ig~~l~~~a~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~fp-~~rg~~~gi~~~~~glg~~i~~~l~~  175 (594)
                      ++.+++.+++++....   .++++.+++.|+++|++.+...+...+++.|++| ++|++++|+...+.++|..+++.+.+
T Consensus       100 ~~~~~~~~~~~~~~~~---~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~  176 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWA---TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL  176 (451)
T ss_dssp             HHHHHHHHHHHHCHHH---HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHHHHHHHHhhhhc---cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888661000   0678889999999999999999999999999998 67999999999999999999876665


Q ss_pred             HHhCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc-hhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccchh
Q 007665          176 AIYGNDAKSMILLIAWLPALVSLVFVYTIRPLKVSSHPN-ELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGSA  254 (594)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (594)
                      .+.+                                ..+ |+..|.....+.+...+.                      
T Consensus       177 ~l~~--------------------------------~~g~w~~~f~~~~~~~~~~~~~----------------------  202 (451)
T 1pw4_A          177 LGMA--------------------------------WFNDWHAALYMPAFCAILVALF----------------------  202 (451)
T ss_dssp             HHHH--------------------------------HTCCSTTCTHHHHHHHHHHHHH----------------------
T ss_pred             HHHH--------------------------------HhccHHHHHHHHHHHHHHHHHH----------------------
Confidence            4332                                124 666655221111100000                      


Q ss_pred             hHHHHhhhhcchhhhhhhhhhhhcCCCCCCCcccccccccchhhhhhhhhhhcccccccccccccCCCCCCCCCcCCCCC
Q 007665          255 IAVCIFVFLPLFIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEILEIESDHSQTLQTENKKQEPDQTPCCGNIF  334 (594)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (594)
                                ..+..+++++ +...     ++.    ++             .+++.+           . +.   +...
T Consensus       203 ----------~~~~~~~~~~-~~~~-----~~~----~~-------------~~~~~~-----------~-~~---~~~~  234 (451)
T 1pw4_A          203 ----------AFAMMRDTPQ-SCGL-----PPI----EE-------------YKNDYP-----------D-DY---NEKA  234 (451)
T ss_dssp             ----------HHHHCCCSST-TTCC-----CSC----TT-------------TCCC------------------------
T ss_pred             ----------HHhhccCCHh-hcCC-----CCh----hh-------------hccccc-----------c-cc---hhhh
Confidence                      0011111100 0000     000    00             000000           0 00   0000


Q ss_pred             CCCCCCCCccHHHhhchHHHHHHHHHHHhhccccceeeccHHHHHHh-cCCCCCcchhhHHHHhhhhhHhhhhhccccHH
Q 007665          335 KPPKRGEDYGILQALLSIDMLILFLATFCGLGCSLTAIDNLGQIGES-LGYPQHTINTFVSLVSIWNYFGRVFAGFVSEI  413 (594)
Q Consensus       335 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~~g~~~~g~l~dr  413 (594)
                      +++...++...++.+|+|.+|.+.+..++.......+..+.|.++++ .|+++.+++...++..++.++++++.|++.||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~  314 (451)
T 1pw4_A          235 EQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK  314 (451)
T ss_dssp             ----CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00011111224778899999988888777766666677788888887 69999999999999999999999999999999


Q ss_pred             H--hhhccCCchHHHHHHHHHHH-HHHHHHhcc---CcchHHHHHHHHHHHhhhhHHHHHHHHHHhccCCccccccchhh
Q 007665          414 I--LLKYKVPRPLIMAISLILSA-VGDVLIAFP---KPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQ  487 (594)
Q Consensus       414 ~--g~r~~~~~~~~~~~~~~~~~-i~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~  487 (594)
                      +  ++|+      .+..+.++.. ++++++...   +.+...+..++.|++.+...+....+..|.+|++++|+++|+.+
T Consensus       315 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  388 (451)
T 1pw4_A          315 VFRGNRG------ATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTG  388 (451)
T ss_dssp             TSTTCHH------HHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred             HhcCCch------hHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHH
Confidence            8  7663      3344444433 555555443   22345556778888888888888899999999999999999999


Q ss_pred             ccchh-hhhhhhhhHHHhhhhHHHHHhhhhhhcccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHh
Q 007665          488 LASPL-GSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVM  558 (594)
Q Consensus       488 ~~~~l-g~~~~gp~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  558 (594)
                      ....+ ++.+ +|.+.|.+.|.                        .+|+..|++.+++.+++.++.+.+.+
T Consensus       389 ~~~~~~g~~~-~~~~~g~l~~~------------------------~g~~~~~~~~~~~~~~~~~~~~~~~~  435 (451)
T 1pw4_A          389 LFGYLGGSVA-ASAIVGYTVDF------------------------FGWDGGFMVMIGGSILAVILLIVVMI  435 (451)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHS------------------------SCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHh------------------------cCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999 9876 99999999987                        57999999999988888877766543
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query594
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 100.0
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.92
d1pw4a_ 447 Glycerol-3-phosphate transporter {Escherichia coli 99.4
d1pv7a_ 417 Lactose permease {Escherichia coli [TaxId: 562]} 98.93
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8e-34  Score=296.37  Aligned_cols=414  Identities=14%  Similarity=0.117  Sum_probs=278.9

Q ss_pred             HHHHHhhhHHHHHHHHHHHHhhh-hhhchhhhHHHHHHHhCCCHhHHHHHHHHHhhhh-hhhhhhhhhhcccCchHHHHH
Q 007665           17 LLQVLRGRWFMMFASFLIMAGAG-ATYLFGTYSKEIKSTLGYDQTTLNLLSTCKDLGA-NVGVLSGLLAEVTPPWLVLLV   94 (594)
Q Consensus        17 ~~~~~~~~w~~~~~~~l~~~~~g-~~~~~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~-~~~~~~G~l~Dr~G~r~v~~~   94 (594)
                      ++..++.+|.++...++..+... +...++...|.++ |+|+|.+|++++.+.+.++. +.++++|+++||+|||+++.+
T Consensus        16 ~~~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   94 (447)
T d1pw4a_          16 DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA   94 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            33445678888777666655543 5567888888776 58999999999766666665 668999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHhhhhhhhhhhhHhHHhhcCC-CceeehhHHHHHhhhhHHHHHHHH
Q 007665           95 GSAMNFGGYFMIWLAVMKKIAKPKVWQMCLYICIGANSQNFANTGSLVTCVKNFP-ESRGMMLGLMKGFVGLSGAVFTQI  173 (594)
Q Consensus        95 g~~l~~ig~~l~~~a~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~i~~~fp-~~rg~~~gi~~~~~glg~~i~~~l  173 (594)
                      +.++.+++.++++++...  . ++++.+++.|++.|++.+..++....++.+++| ++|++++|+...+..+|..+++.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~  171 (447)
T d1pw4a_          95 GLILAAAVMLFMGFVPWA--T-SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLL  171 (447)
T ss_dssp             HHHHHHHHHHHHHHCHHH--H-SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHHhhccccchh--h-hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhh
Confidence            999999998877654211  1 357788999999999999999999999999997 569999999999999998888765


Q ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCccccch
Q 007665          174 YLAIYGNDAKSMILLIAWLPALVSLVFVYTIRPLKVSSHPNELKVFYEYLYITISLALCLMGLTIAQKQAHFPHVGYIGS  253 (594)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (594)
                      .......                               ..+|+..+.....+.+..++..                    
T Consensus       172 ~~~~~~~-------------------------------~~~w~~~~~~~~~~~~~~~~~~--------------------  200 (447)
T d1pw4a_         172 FLLGMAW-------------------------------FNDWHAALYMPAFCAILVALFA--------------------  200 (447)
T ss_dssp             HHHHHHH-------------------------------TCCSTTCTHHHHHHHHHHHHHH--------------------
T ss_pred             hhhHhhh-------------------------------hhcccccchhhhhhHHHHHHHH--------------------
Confidence            5433221                               2255555442211111110000                    


Q ss_pred             hhHHHHhhhhcchhhhhhhhhhhhcCCCCCCCcccccccccchhhhhhhhhhhcccccccccccccCCCCCCCCCcCCCC
Q 007665          254 AIAVCIFVFLPLFIAFREEFAAWQQRKQPTPASAVVIVFEQTTLVATKSEILEIESDHSQTLQTENKKQEPDQTPCCGNI  333 (594)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (594)
                                  ....++.+ ....     .+..    ++             .+++               ..+...+.
T Consensus       201 ------------~~~~~~~~-~~~~-----~~~~----~~-------------~~~~---------------~~~~~~~~  230 (447)
T d1pw4a_         201 ------------FAMMRDTP-QSCG-----LPPI----EE-------------YKND---------------YPDDYNEK  230 (447)
T ss_dssp             ------------HHHCCCSS-TTTC-----CCSC----TT-------------TCCC-----------------------
T ss_pred             ------------HHhcccch-hhcc-----cchh----hh-------------hhhh---------------cccchhhc
Confidence                        00011000 0000     0000    00             0000               00000000


Q ss_pred             CCCCCCCCCccHHHhhchHHHHHHHHHHHhhccccceeeccHHHHHHh-cCCCCCcchhhHHHHhhhhhHhhhhhccccH
Q 007665          334 FKPPKRGEDYGILQALLSIDMLILFLATFCGLGCSLTAIDNLGQIGES-LGYPQHTINTFVSLVSIWNYFGRVFAGFVSE  412 (594)
Q Consensus       334 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~a~~~~~~~~i~~~~g~~~~g~l~d  412 (594)
                      .+++...+....++.++++.+|.+....++..........+.+.++++ .+++..+.+....+..++..+++++.|++.|
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  310 (447)
T d1pw4a_         231 AEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD  310 (447)
T ss_dssp             -----CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhh
Confidence            011111122345677889999988877777666666666777777765 5889899999999999999999999999999


Q ss_pred             HHhhhccCCchHHHHHHHHHHHHHHHHHhcc---CcchHHHHHHHHHHHhhhhHHHHHHHHHHhccCCccccccchhhcc
Q 007665          413 IILLKYKVPRPLIMAISLILSAVGDVLIAFP---KPGSVYVASLLVGFSYGAQLTLLFIIISELFGLKYYSTLFNCGQLA  489 (594)
Q Consensus       413 r~g~r~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  489 (594)
                      |++|+.   +.........+..++.......   +.+...+..++.|++.+...+....+..|.+|++.+|++.|+.+..
T Consensus       311 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  387 (447)
T d1pw4a_         311 KVFRGN---RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLF  387 (447)
T ss_dssp             HTSTTC---HHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHH
T ss_pred             hccccc---cccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence            998763   2222233333333333333222   1234555667788888888888889999999999999999999888


Q ss_pred             chhhhhhhhhhHHHhhhhHHHHHhhhhhhcccccCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 007665          490 SPLGSYVLNVIVVGRLYDREAMKQLAEKGMTRAMVKDLTCIGRQCYRLSFTILAGVNIFGALITFILVMRTRR  562 (594)
Q Consensus       490 ~~lg~~~~gp~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  562 (594)
                      ..+++.+.+|.+.|.+.|.                        .+|+..|++..++++++.++...+..++++
T Consensus       388 ~~~~g~~~~~~~~g~~~~~------------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (447)
T d1pw4a_         388 GYLGGSVAASAIVGYTVDF------------------------FGWDGGFMVMIGGSILAVILLIVVMIGEKR  436 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHS------------------------SCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH------------------------hChHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8876555589899999888                        578999999888888888877776655444
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure