Citrus Sinensis ID: 007796

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
MVMMMMMMQQQNSSAQPQPQPQSQSTASATAATANNSSLRSPTTAAAAATHAPRQAIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDSPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEDGLCNRSDNTYLVQNNLNKEPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDDRRLFHNAALRKRRKEMGDQMDPMRRSNRENGDATTTDDGLNRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGENVRLQYRSLRKILNSQTIEDSCPSHQVQNSSS
cHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHcEEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccEEEEEccccccccccccccccccccccccccccccEEEEEcccccccEEEcccccEEEcccccccccEEEEHHHHHHHHHccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEccEEEEEccccccccccccEEEEEEEccccEEEEEEEccccEEEEHHHHHHHHcccccccccccccccccccc
ccEEEEEHEccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccEEEHHccccccccccHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHccccccccccccEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccccccEEEEEccccccccccccHHccccccccccccHcccEEEEEccccccEEEEccccEEEEEEcccccccEEEEcHHHHHHHHcccccccEEEEEccccccccccccEEEEEEEccccccEEccccHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHcccccHHHHHHcEEEcccccccHHHHHHHHHHHHcccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEEccEEEEEcccccccccccEEEEEEEEccccEEEEEEEcccccEEEEHHHHHHccccccccccccccccccccc
MVMMMMMMQqqnssaqpqpqpqsqstaSATAatannsslrsptTAAAAAthaprqaipiaaaadhaigpvvvpisveppvattmlprvrlsdvapydgapagpYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTksqtvgkgsrgvYMYRAgraledwdssppcmaDIFRCMGKAARAALFAIARHLRLRSDVFNhllddtplpanevsSSVLVatyspaslqngkgaigaigggkpamngeVEKGLLTLIssdspglqvcdpngrwyladggsapgdLLLITGKALShataglrpaalyraapdfvscsngggrtsLAFRLmpqgnaildcspiaaaghvipqsyvpisvsqfmddlsaeedglcnrsdntylvqnnlnkepslrsvlsdplsgaflddamvvscghsfgglmlrkvidtsrcticsaeietgslvpNLALRAAAVAIKQEDDRRLFHNAALRKRRKEmgdqmdpmrrsnrengdatttddglnrgvqypfsvnEKVLikgnrrtpekfvgkeAVITSQCLNGWYLLNIIGSGENVRLQYRSLRKILNSqtiedscpshqvqnsss
MVMMMMMMQQQNSSAQPQPQPQSQSTASATAATANNSSLRSPTTAAAAATHAPRQAIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFrtksqtvgkgsrgvYMYRAGRaledwdsspPCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDSPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEDGLCNRSDNTYLVQNNLNKEPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAeietgslvpnLALRAAAVaikqeddrrlfHNAALRkrrkemgdqmdpmrrsnrengdatttddglnrgvqypfsvnekvlikgnrrtpekfvgkeavitsqCLNGWYLLNIIGSGENVRLQYRSLRKILNsqtiedscpshqvqnsss
MVmmmmmmqqqnssaqpqpqpqsqstasataatannssLRSPttaaaaathaprqaipiaaaadhaigpvvvpisveppvATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKaaraalfaiarhlrlrSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNgkgaigaigggkPAMNGEVEKGLLTLISSDSPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEDGLCNRSDNTYLVQNNLNKEPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDDRRLFHNAALRKRRKEMGDQMDPMRRSNRENGDATTTDDGLNRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGENVRLQYRSLRKILNSQTIEDSCPSHQVQNSSS
*******************************************************AIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQ*GKGAIGAIGG*******EVEKGLLTLISSDSPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEDGLCNRSDNTYLVQN**********VLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQE****L***************************************GVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGENVRLQYRSLRKILN******************
**************************************************************ADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPAS**************KPAMNGEVEKGLLTLISSDSPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVS*SNGGGRTSLAFRLMPQGNAILDCSPI*************ISVSQFMDDLSAE******************************PLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQ**********************************************VQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGENVRLQYRS************************
****************************************************PRQAIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDSPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEDGLCNRSDNTYLVQNNLNKEPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDDRRLFHNAALRKRRKEMGDQMDPMRRSNRENGDATTTDDGLNRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGENVRLQYRSLRKILNSQTI**************
*VMMM******************************************************AA**DHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDSPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEDGLCNRSDNTY*VQNN**KEPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDDRRLFHNAALRKRR***************************NRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGENVRLQYRSLRKIL*******************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVMMMMMMQQQNSSAQPQPQPQSQSTASATAATANNSSLRSPTTAAAAATHAPRQAIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDSPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEDGLCNRSDNTYLVQNNLNKEPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSAEIETGSLVPNLALRAAAVAIKQEDDRRLFHNAALRKRRKEMGDQMDPMRRSNRENGDATTTDDGLNRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGENVRLQYRSLRKILNSQTIEDSCPSHQVQNSSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query589 2.2.26 [Sep-21-2011]
Q6DBN5363 U-box domain-containing p no no 0.314 0.509 0.396 1e-34
Q58FY4383 U-box domain-containing p no no 0.280 0.430 0.425 3e-34
>sp|Q6DBN5|PUB62_ARATH U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1 Back     alignment and function desciption
 Score =  148 bits (373), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 77/194 (39%), Positives = 117/194 (60%), Gaps = 9/194 (4%)

Query: 375 DGLCNRSDNTYLVQNNLNKEPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTS 434
           D  C+ S    L  ++ N   SLR++LSDP +G+ + DAM++ CGH+FG   + +V    
Sbjct: 160 DNGCDFSGRRDLSSSSSNSIESLRTILSDPTTGSLMADAMILPCGHTFGAGGIEQVKQMK 219

Query: 435 RCTICSAEIETGSLVPNLALRAAAVAIKQEDDRRLFHNAALRKRRKEMGDQMDPMRRSNR 494
            C  CS  +   S+ PNL LR A  A  +E++ +  H +   KR++E  DQ        R
Sbjct: 220 ACCTCSQPVSEDSITPNLTLRVAVQAFCREENSQSNHPS---KRKREGFDQ------ERR 270

Query: 495 ENGDATTTDDGLNRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIG 554
             G    +    N+   +PF+V ++V+IKGN+RTP +FVG+EAV+T+QCLNGWY++  + 
Sbjct: 271 AFGVTNHSGRSRNKSNHFPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLD 330

Query: 555 SGENVRLQYRSLRK 568
           + E+V+LQYRSL K
Sbjct: 331 NAESVKLQYRSLAK 344
Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q58FY4|PUB63_ARATH U-box domain-containing protein 63 OS=Arabidopsis thaliana GN=PUB63 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query589
224101341589 predicted protein [Populus trichocarpa] 0.955 0.955 0.765 0.0
225425069597 PREDICTED: uncharacterized protein LOC10 0.977 0.964 0.747 0.0
356544410578 PREDICTED: uncharacterized protein LOC10 0.940 0.958 0.758 0.0
297738249510 unnamed protein product [Vitis vinifera] 0.847 0.978 0.821 0.0
255549503560 conserved hypothetical protein [Ricinus 0.949 0.998 0.732 0.0
224112291505 predicted protein [Populus trichocarpa] 0.848 0.990 0.799 0.0
356538604585 PREDICTED: uncharacterized protein LOC10 0.862 0.868 0.794 0.0
449445330580 PREDICTED: uncharacterized protein LOC10 0.971 0.986 0.705 0.0
30685540554 RING/U-box-containing protein-like prote 0.840 0.893 0.708 0.0
297834924554 hypothetical protein ARALYDRAFT_898385 [ 0.840 0.893 0.706 0.0
>gi|224101341|ref|XP_002312241.1| predicted protein [Populus trichocarpa] gi|222852061|gb|EEE89608.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/576 (76%), Positives = 483/576 (83%), Gaps = 13/576 (2%)

Query: 17  PQPQPQSQSTASATAATANNSSLRSPTTAAAAATHAPRQAIPIAAAADHAIGPVVVPISV 76
           P P P S S A  + AT +++  + P   A  ++ + R   P   A DH I PV      
Sbjct: 23  PHPVPLSTS-AHRSPATPSHTQSQPPLPLAPLSSSSHRLPPP---ALDHVISPVASAAHH 78

Query: 77  EPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCG 136
               A T L RVRLSD++PYDGAP GPY++AV+ALSGSLMRHNAAVIELGSE+A++MRCG
Sbjct: 79  SADPAPT-LARVRLSDISPYDGAPGGPYVRAVDALSGSLMRHNAAVIELGSEEASLMRCG 137

Query: 137 LEAARLYFRTKSQT-VGKG--SRGVYMYRAGRALEDWDSSPPCMADIFRCMGKAARAALF 193
           LEAARLYFR++SQ  V KG   RGVYMYRAGR +EDWDSSPPCMA+IFRCMGKAAR+AL 
Sbjct: 138 LEAARLYFRSRSQNGVVKGCSGRGVYMYRAGRPVEDWDSSPPCMAEIFRCMGKAARSALC 197

Query: 194 AIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNG 253
           AIARHLRLRSDVFN LLDDTPLPA EVSSSVLVATYS  SLQNGKGAIGA   GKPA NG
Sbjct: 198 AIARHLRLRSDVFNQLLDDTPLPAGEVSSSVLVATYSHTSLQNGKGAIGA---GKPAANG 254

Query: 254 EVEKGLLTLISSDSPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYR 313
           EVEKGLLTLISSDSPGLQVCDPNGRWYLAD GSAP DLLLITGK LSH TAGLRPAA YR
Sbjct: 255 EVEKGLLTLISSDSPGLQVCDPNGRWYLADCGSAPVDLLLITGKTLSHTTAGLRPAASYR 314

Query: 314 AAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAE 373
           AAPDF S +N GGRTSL FRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAE
Sbjct: 315 AAPDFSSGTNSGGRTSLVFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAE 374

Query: 374 EDGLCNRSDNTYLVQNNLNKEPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDT 433
           ED +CN+ +NTY+ +N++NKEPSLRSVLSDPLSGAFL+DAM VSCGHSFGGLMLR+VID 
Sbjct: 375 EDVVCNQPNNTYVARNDMNKEPSLRSVLSDPLSGAFLEDAMFVSCGHSFGGLMLRRVIDM 434

Query: 434 SRCTICSAEIETGSLVPNLALRAAAVAIKQEDDRRLFHNAALRKRRKEMGDQMDPM-RRS 492
           SRCT+C+AEIE GSLVPN ALRAAA A+K EDDRRLFHNA LRKRRKEMGD  D M +R 
Sbjct: 435 SRCTLCNAEIEAGSLVPNYALRAAASAVKNEDDRRLFHNATLRKRRKEMGDHTDSMKKRP 494

Query: 493 NRENGDATTTDDGLNRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNI 552
           + ENGD    DDGL+RGVQYPF+VNEKV+IKGNRRTPEKFVGKEA+ITSQCLNGWYLL I
Sbjct: 495 HGENGD-IAADDGLHRGVQYPFAVNEKVVIKGNRRTPEKFVGKEAIITSQCLNGWYLLKI 553

Query: 553 IGSGENVRLQYRSLRKILNSQTIEDSCPSHQVQNSS 588
           IGSGENVRLQYRSLRKILNS+ IED C S  +QNSS
Sbjct: 554 IGSGENVRLQYRSLRKILNSEAIEDRCASQPIQNSS 589

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225425069|ref|XP_002270763.1| PREDICTED: uncharacterized protein LOC100247878 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356544410|ref|XP_003540644.1| PREDICTED: uncharacterized protein LOC100807199 [Glycine max] Back     alignment and taxonomy information
>gi|297738249|emb|CBI27450.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255549503|ref|XP_002515804.1| conserved hypothetical protein [Ricinus communis] gi|223545073|gb|EEF46585.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224112291|ref|XP_002316144.1| predicted protein [Populus trichocarpa] gi|222865184|gb|EEF02315.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356538604|ref|XP_003537792.1| PREDICTED: uncharacterized protein LOC100794424 [Glycine max] Back     alignment and taxonomy information
>gi|449445330|ref|XP_004140426.1| PREDICTED: uncharacterized protein LOC101206682 [Cucumis sativus] Back     alignment and taxonomy information
>gi|30685540|ref|NP_683575.2| RING/U-box-containing protein-like protein [Arabidopsis thaliana] gi|26452927|dbj|BAC43540.1| unknown protein [Arabidopsis thaliana] gi|332642784|gb|AEE76305.1| RING/U-box-containing protein-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297834924|ref|XP_002885344.1| hypothetical protein ARALYDRAFT_898385 [Arabidopsis lyrata subsp. lyrata] gi|297331184|gb|EFH61603.1| hypothetical protein ARALYDRAFT_898385 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query589
TAIR|locus:504955744554 AT3G19895 "AT3G19895" [Arabido 0.813 0.864 0.687 2.3e-174
TAIR|locus:2153484363 AT5G05230 [Arabidopsis thalian 0.354 0.575 0.369 5.1e-35
TAIR|locus:2061823383 AT2G40640 "AT2G40640" [Arabido 0.288 0.443 0.433 1.5e-33
TAIR|locus:2089245474 AT3G12940 "AT3G12940" [Arabido 0.371 0.462 0.344 9.1e-30
TAIR|locus:504955744 AT3G19895 "AT3G19895" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1694 (601.4 bits), Expect = 2.3e-174, P = 2.3e-174
 Identities = 337/490 (68%), Positives = 391/490 (79%)

Query:    83 TMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARL 142
             T L RVRLS++ PY+GAP+  Y KAVEALS SLMR+NA+VIE+GSED A+MRCGLEAARL
Sbjct:    58 TPLARVRLSEILPYEGAPSPVYAKAVEALSVSLMRYNASVIEIGSEDTALMRCGLEAARL 117

Query:   143 YFRTKSQTV-GKGSRGVYMYRAGRALEDWDSSPPCMADIFRCMGKXXXXXXXXXXXXXXX 201
             YFRT+S TV GKG+RG+ MYRAGR++ED DSSPPCMA+IFRC+GK               
Sbjct:   118 YFRTRSLTVSGKGNRGLSMYRAGRSVEDLDSSPPCMAEIFRCLGKVARAALSAIARHLRL 177

Query:   202 XSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNXXXXXXXXXXXXPAMNGEVEKGLLT 261
              SDVFNH+LDD PL  NEVSSSVL+A+Y+ AS+QN                 EVEKGLLT
Sbjct:   178 RSDVFNHMLDDFPLAPNEVSSSVLLASYAHASIQNGKHASGGGNLSAKI---EVEKGLLT 234

Query:   262 LISSDSPGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSC 321
             L  SD  G+QVCDPNGRWY AD G   GDLLLITGKALSHATAGLRPAA YR   D +S 
Sbjct:   235 LFCSDGTGIQVCDPNGRWYTADNGCGVGDLLLITGKALSHATAGLRPAASYRTTTDHLSA 294

Query:   322 SNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYVPISVSQFMDDLSAEEDGLCNRS 381
             ++  GR SLAFRLMP+ NAILDCSPI AAGHVIPQSYVP+SVSQFMD+L AE D L N  
Sbjct:   295 TDTRGRASLAFRLMPKSNAILDCSPIEAAGHVIPQSYVPVSVSQFMDNLLAENDTLVNPP 354

Query:   382 DNTYLVQNNLNKEPSLRSVLSDPLSGAFLDDAMVVSCGHSFGGLMLRKVIDTSRCTICSA 441
               T + ++++ KEPSLRSVLSDP+SGAFL+DAMVVSCGHSFGGLMLR+V++ SRCT+C+ 
Sbjct:   355 VKTNVPRDDVCKEPSLRSVLSDPISGAFLEDAMVVSCGHSFGGLMLRRVLEMSRCTLCNT 414

Query:   442 EIETGSLVPNLALRAAAVAIKQEDDRRLFHNAALRKRRKEMGDQMDPMRRSNRENGDATT 501
             EIE+GSLVPN ALRAAA AIKQ+DD+RLFHNAA+R+RRKEM DQMD       ENGD  T
Sbjct:   415 EIESGSLVPNHALRAAASAIKQQDDKRLFHNAAMRRRRKEMSDQMDV------ENGDPAT 468

Query:   502 TDDGLNRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLNIIGSGENVRL 561
              DDG++R V YPF+VNEKVLIKGNRRTPEKFVGKEA++TSQCLNGWYLL I+ SG+NVRL
Sbjct:   469 -DDGMHRVVHYPFAVNEKVLIKGNRRTPEKFVGKEAIVTSQCLNGWYLLKIVESGDNVRL 527

Query:   562 QYRSLRKILN 571
             QYRSL+K++N
Sbjct:   528 QYRSLKKMVN 537
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2153484 AT5G05230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061823 AT2G40640 "AT2G40640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089245 AT3G12940 "AT3G12940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query589
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 5e-04
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 0.001
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information 
 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 62/298 (20%), Positives = 92/298 (30%), Gaps = 68/298 (22%)

Query: 83  TMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARL 142
                + + D++   G+  G   +  + L  +        +     DAA++      AR 
Sbjct: 1   MSTRDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQ 60

Query: 143 YF----RTKSQTVGKGS---RGVY-----------MYRA----GRALEDWDSSPP----- 175
           +F      K + +       RG              Y+     G  L+   +        
Sbjct: 61  FFALPVEEKLKILMVLGRQHRGYTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPL 120

Query: 176 --------------CMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVS 221
                          +   +R M       L AIA  L L  D F+    D         
Sbjct: 121 HGPNLWPAIPGLRDALLQYYRAMTAVGLRLLRAIALGLDLPEDFFDKRTSD--------P 172

Query: 222 SSVL-VATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRW 279
           +SVL +  Y     + G   +GA              GLLTL+  D   GL+V  PNG W
Sbjct: 173 NSVLRLLRYPSRPAREGADGVGAHTDY----------GLLTLLFQDDVGGLEVRPPNGGW 222

Query: 280 YLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQ 337
                   PG L++  G  L   T G       R+    V    G  R S+ F L P 
Sbjct: 223 LDVP--PIPGTLVVNIGDMLERWTNG-----RLRSTVHRVRNPPGVDRYSIPFFLEPN 273

Length = 322
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 589
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02485329 oxidoreductase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02216357 protein SRG1 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02997325 flavonol synthase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02704335 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.79
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.41
PLN03176120 flavanone-3-hydroxylase; Provisional 99.36
PF0456473 U-box: U-box domain; InterPro: IPR003613 Quality c 99.25
smart0050463 Ubox Modified RING finger domain. Modified RING fi 98.86
TIGR00599 397 rad18 DNA repair protein rad18. This family is bas 97.15
PF1178957 zf-Nse: Zinc-finger of the MIZ type in Nse subunit 96.07
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 94.59
KOG0287 442 consensus Postreplication repair protein RAD18 [Re 94.49
PF1344543 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A. 93.77
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 92.83
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 92.35
PF1392339 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); 92.04
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 91.93
PF1363944 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 91.91
PF1522742 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 91.66
COG5432 391 RAD18 RING-finger-containing E3 ubiquitin ligase [ 90.71
cd0016245 RING RING-finger (Really Interesting New Gene) dom 90.56
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 90.54
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 90.17
KOG2177 386 consensus Predicted E3 ubiquitin ligase [Posttrans 90.15
KOG2042943 consensus Ubiquitin fusion degradation protein-2 [ 89.79
PF04641260 Rtf2: Rtf2 RING-finger 89.77
KOG4642284 consensus Chaperone-dependent E3 ubiquitin protein 89.25
KOG1645 463 consensus RING-finger-containing E3 ubiquitin liga 88.04
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 87.8
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 86.61
smart0018439 RING Ring finger. E3 ubiquitin-protein ligase acti 85.78
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 84.75
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 84.23
TIGR00570 309 cdk7 CDK-activating kinase assembly factor MAT1. A 83.72
PF1267873 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 83.4
PF0009741 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I 83.05
PHA02929238 N1R/p28-like protein; Provisional 82.6
PF1463444 zf-RING_5: zinc-RING finger domain 80.01
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.6e-56  Score=464.38  Aligned_cols=267  Identities=20%  Similarity=0.253  Sum_probs=229.7

Q ss_pred             CCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC-------CCCCc
Q 007796           84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV-------GKGSR  156 (589)
Q Consensus        84 ~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~-------~~~~r  156 (589)
                      +.+.||+|||+.+.++++.++.+++++|.+||+++|||||.||||+.++++++++.+++||+||.|++       ....+
T Consensus         2 ~~~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~   81 (320)
T PTZ00273          2 TRASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHR   81 (320)
T ss_pred             CCCCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCC
Confidence            46789999999998777778889999999999999999999999999999999999999999999882       12356


Q ss_pred             ccccccC------C------cC----------------------CCCCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHh
Q 007796          157 GVYMYRA------G------RA----------------------LEDWDSS-P---PCMADIFRCMGKAARAALFAIARH  198 (589)
Q Consensus       157 GyY~~~~------g------e~----------------------lddWP~~-P---~~m~~y~~~m~kla~~LL~aIA~~  198 (589)
                      || ....      +      +.                      ...||.. |   +.+++|++.|.+++..||++||++
T Consensus        82 GY-~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~  160 (320)
T PTZ00273         82 GY-GAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRALALA  160 (320)
T ss_pred             CC-CCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            73 3211      0      00                      0017755 3   799999999999999999999999


Q ss_pred             CCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEcCCC
Q 007796          199 LRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNG  277 (589)
Q Consensus       199 LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~~~G  277 (589)
                      |||++++|.+.+++ +      .+.+|++|||+++.... ..        .++++|||+|+||||+||. +||||++++|
T Consensus       161 Lgl~~~~f~~~~~~-~------~~~lrl~~YP~~~~~~~-~~--------~g~~~HTD~g~lTlL~qd~~~GLqV~~~~g  224 (320)
T PTZ00273        161 IGLREDFFDSKFME-P------LSVFRMKHYPALPQTKK-GR--------TVCGEHTDYGIITLLYQDSVGGLQVRNLSG  224 (320)
T ss_pred             hCcCHHHHHHhhCC-C------cceeeeeecCCCCCccc-cC--------cccccccCCCeEEEEecCCCCceEEECCCC
Confidence            99999999998866 3      25899999999874321 12        3589999999999999996 9999999899


Q ss_pred             ceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCC
Q 007796          278 RWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQS  357 (589)
Q Consensus       278 ~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~  357 (589)
                      +|++|++.  ||++|||+||+|++||||+|+|++|||+.+      ..+|||++||++|+.|++|.|+++++.. +.|.+
T Consensus       225 ~Wi~V~p~--pg~lvVNvGD~l~~~TnG~~kSt~HRVv~~------~~~R~Si~~F~~p~~d~~i~pl~~~~~~-~~~~~  295 (320)
T PTZ00273        225 EWMDVPPL--EGSFVVNIGDMMEMWSNGRYRSTPHRVVNT------GVERYSMPFFCEPNPNVIIKCLDNCHSE-ENPPK  295 (320)
T ss_pred             CEEeCCCC--CCeEEEEHHHHHHHHHCCeeeCCCccccCC------CCCeEEEEEEEcCCCCceEecCccccCC-CCccc
Confidence            99999998  999999999999999999999999999853      4689999999999999999999998854 57899


Q ss_pred             CCCccHHHHHHHHHHhhcc
Q 007796          358 YVPISVSQFMDDLSAEEDG  376 (589)
Q Consensus       358 y~pit~~df~~~r~~~~~~  376 (589)
                      |++++++||+..++...|.
T Consensus       296 y~~~~~~e~~~~~~~~~~~  314 (320)
T PTZ00273        296 YPPVRAVDWLLKRFAETYA  314 (320)
T ss_pred             CCceeHHHHHHHHHHHHHH
Confidence            9999999999999988773

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis Back     alignment and domain information
>smart00504 Ubox Modified RING finger domain Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C Back     alignment and domain information
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair] Back     alignment and domain information
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A Back     alignment and domain information
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A Back     alignment and domain information
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms] Back     alignment and domain information
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H) Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04641 Rtf2: Rtf2 RING-finger Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>smart00184 RING Ring finger Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>PF14634 zf-RING_5: zinc-RING finger domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query589
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-06
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 9e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.1 bits (129), Expect = 1e-07
 Identities = 81/570 (14%), Positives = 157/570 (27%), Gaps = 183/570 (32%)

Query: 104 YLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTVGKGSRGVYMYRA 163
             K++  LS   + H   +I                    F T      K    V  +  
Sbjct: 41  MPKSI--LSKEEIDH---IIMSKDAV--------SGTLRLFWTLLS---KQEEMVQKF-V 83

Query: 164 GRALE---DWDSSPPCMADIFR--CMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPAN 218
              L     +      +    +      +    ++ I +  RL +D              
Sbjct: 84  EEVLRINYKF------LMSPIKTEQRQPSMMTRMY-IEQRDRLYNDN-------QVFAKY 129

Query: 219 EVSSSVLVATYSPA--SLQNGKGAI--GAIGGGKPAMNGEVEKGLLTLISSDSPGLQVCD 274
            VS          A   L+  K  +  G +G GK  +  +V           S  +Q   
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV---------CLSYKVQCKM 180

Query: 275 PNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAF-- 332
               ++L        + +L   + L           LY+  P++ S S+      L    
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKL-----------LYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 333 ------RLM---PQGNA--ILD--------------C--------SPIAAAGHVIPQSYV 359
                 RL+   P  N   +L               C          +     +   +  
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF--LSAATTT 287

Query: 360 PISVSQFMDDLSAEEDGLCNRSDNTYLVQNNLNKEPS-LRS--VLSDPLS----GAFLDD 412
            IS+      L+ +E        +  L+   L+  P  L    + ++P         + D
Sbjct: 288 HISLDHHSMTLTPDE------VKS--LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 413 AMV-------VSCGHSFGGLMLRKVIDTSRCTICSAEIET----------GSLVPNLALR 455
            +        V+C        L  +I++S   +  AE              + +P + L 
Sbjct: 340 GLATWDNWKHVNCDK------LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393

Query: 456 AAAVAIKQEDDRRL---FHNAAL-RKRRKEM-----GDQMDPMRRSNRENGDATTTDDGL 506
                + + D   +    H  +L  K+ KE         ++ ++            +  L
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE-LKVKLEN-------EYAL 445

Query: 507 NRGV--QYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNG---WYL---LNIIGSGEN 558
           +R +   Y                P+ F   +  +    L+     ++   L  I   E 
Sbjct: 446 HRSIVDHY--------------NIPKTFDSDD--LIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 559 V---RLQYRSLR----KILNSQTIEDSCPS 581
           +   R+ +   R    KI +  T  ++  S
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query589
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2kr4_A85 Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri 99.11
2kre_A100 Ubiquitin conjugation factor E4 B; U-box domain, E 99.03
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 99.0
2f42_A179 STIP1 homology and U-box containing protein 1; cha 98.84
1t1h_A78 Gspef-atpub14, armadillo repeat containing protein 98.81
2yu4_A94 E3 SUMO-protein ligase NSE2; SP-ring domain, struc 98.8
2c2l_A281 CHIP, carboxy terminus of HSP70-interacting protei 98.6
3ztg_A92 E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR 98.35
2bay_A61 PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l 98.25
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 98.04
3htk_C267 E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL- 97.99
1jm7_B117 BARD1, BRCA1-associated ring domain protein 1; rin 97.93
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 97.88
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 97.8
1z6u_A150 NP95-like ring finger protein isoform B; structura 97.79
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 97.72
3m62_A968 Ubiquitin conjugation factor E4; armadillo-like re 97.68
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 97.55
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 97.51
2ecw_A85 Tripartite motif-containing protein 30; metal bind 97.5
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 97.5
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 97.48
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 97.41
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 97.33
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 97.3
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 97.19
3l11_A115 E3 ubiquitin-protein ligase RNF168; E3 ligase, rin 97.15
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 97.04
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 96.97
3ng2_A71 RNF4, snurf, ring finger protein 4; ring domain, E 96.92
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 96.86
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 96.85
2xeu_A64 Ring finger protein 4; transcription, zinc-finger, 96.74
2ct2_A88 Tripartite motif protein 32; zinc-finger protein H 96.55
1g25_A65 CDK-activating kinase assembly factor MAT1; ring f 96.3
2ysl_A73 Tripartite motif-containing protein 31; ring-type 96.27
2ect_A78 Ring finger protein 126; metal binding protein, st 96.09
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 95.73
2ea6_A69 Ring finger protein 4; RNF4, RES4-26, ring domain, 95.6
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 95.44
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 95.2
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 95.08
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 95.05
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 95.05
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 94.93
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 94.91
2ecm_A55 Ring finger and CHY zinc finger domain- containing 94.75
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 94.7
2ysj_A63 Tripartite motif-containing protein 31; ring-type 94.64
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 94.6
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 94.0
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 93.92
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 93.78
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 92.31
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 92.24
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 91.91
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 91.7
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 91.37
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 89.96
2vje_B63 MDM4 protein; proto-oncogene, phosphorylation, alt 89.79
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 89.79
2ea5_A68 Cell growth regulator with ring finger domain prot 89.06
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 88.73
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 88.73
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 88.19
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 88.13
4a0k_B117 E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi 82.73
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 81.36
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 81.28
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=1e-56  Score=466.00  Aligned_cols=266  Identities=21%  Similarity=0.306  Sum_probs=225.3

Q ss_pred             CCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCCHHHHHHHHHHHHHHhcCcccCC------CCCCcc
Q 007796           84 MLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSEDAAIMRCGLEAARLYFRTKSQTV------GKGSRG  157 (589)
Q Consensus        84 ~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~~ell~~a~~~ar~FF~LP~Ee~------~~~~rG  157 (589)
                      ++..||||||+.+.+    .+.+++++|.+||++||||||.||||+.++++++++.+++||+||.|++      ....+|
T Consensus         3 ~~~~iPvIDls~~~~----~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~G   78 (312)
T 3oox_A            3 STSAIDPVSFSLYAK----DFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARG   78 (312)
T ss_dssp             -CCSSCCEETHHHHH----CHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSE
T ss_pred             CCCCCCeEEChHhcc----cHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCccc
Confidence            467899999998743    5778999999999999999999999999999999999999999999873      123466


Q ss_pred             cccccCCc--------------------C----------CCCCCCC-h---HHHHHHHHHHHHHHHHHHHHHHHhCCCCh
Q 007796          158 VYMYRAGR--------------------A----------LEDWDSS-P---PCMADIFRCMGKAARAALFAIARHLRLRS  203 (589)
Q Consensus       158 yY~~~~ge--------------------~----------lddWP~~-P---~~m~~y~~~m~kla~~LL~aIA~~LGL~~  203 (589)
                       |.....+                    .          ..-||.. |   +.+++|+++|.+++..||++||++|||++
T Consensus        79 -y~~~g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~  157 (312)
T 3oox_A           79 -YIPFGVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLER  157 (312)
T ss_dssp             -EECCCCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             -cccccceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence             3321110                    0          0018865 3   79999999999999999999999999999


Q ss_pred             hHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCcccCceEEEEecCC-CccceEcCCCceEEc
Q 007796          204 DVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLISSDS-PGLQVCDPNGRWYLA  282 (589)
Q Consensus       204 ~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD~GlLTLL~qD~-~GLQV~~~~G~Wi~V  282 (589)
                      ++|.+++++ +      .+.+|++||||++.+. .+         .++++|||+|+||||+||. +||||++++|+|++|
T Consensus       158 ~~f~~~~~~-~------~~~lr~~~Ypp~~~~~-~~---------~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g~W~~V  220 (312)
T 3oox_A          158 DFFKPTVQD-G------NSVLRLLHYPPIPKDA-TG---------VRAGAHGDINTITLLLGAEEGGLEVLDRDGQWLPI  220 (312)
T ss_dssp             TTTHHHHTT-C------CCEEEEEEECCCSSCC-C-----------CEEEECCCSSEEEEECCTTSCEEEECTTSCEEEC
T ss_pred             HHHHHHhcC-C------cceeeeEecCCCCCCc-CC---------cCccceecCceEEEEeEcCcCceEEECCCCcEEEC
Confidence            999999876 2      2589999999987542 11         3589999999999999995 999999999999999


Q ss_pred             cCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeeecCCCcEEecCcccccCCCCCCCCC-Cc
Q 007796          283 DGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSPIAAAGHVIPQSYV-PI  361 (589)
Q Consensus       283 pp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~P~~DavI~Plp~~vag~~~p~~y~-pi  361 (589)
                      +|.  ||++|||+||+|++||||+|+|+.|||+.+... ..+.+|||++||++|+.|++|.|+++++.. ++|++|+ ++
T Consensus       221 ~p~--pg~~vVNiGD~l~~~TnG~~kS~~HRVv~~~~~-~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~-~~p~~y~~~~  296 (312)
T 3oox_A          221 NPP--PGCLVINIGDMLERLTNNVLPSTVHRVVNPPPE-RRGVPRYSTPFFLHFASDYEIKTLQNCVTA-ENPDRYPESI  296 (312)
T ss_dssp             CCC--SSCEEEEECHHHHHHTTTSSCCCCEEECCCCGG-GTTSCEEECCEEECCCTTCEECCCGGGCCS-SSCCSCSSCE
T ss_pred             CCC--CCeEEEEhHHHHHHHhCCeecCCCceEeCCCcc-CCCCCEEEEEEEecCCCCcEEecCccccCC-CCcccCCCCe
Confidence            998  999999999999999999999999999865211 124689999999999999999999999854 5799999 99


Q ss_pred             cHHHHHHHHHHhhc
Q 007796          362 SVSQFMDDLSAEED  375 (589)
Q Consensus       362 t~~df~~~r~~~~~  375 (589)
                      +++||+..++.+..
T Consensus       297 t~~eyl~~r~~~~~  310 (312)
T 3oox_A          297 TADEFLQQRLREIK  310 (312)
T ss_dssp             EHHHHHHHHHHHHC
T ss_pred             eHHHHHHHHHHHhc
Confidence            99999999998643
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Back     alignment and structure
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Back     alignment and structure
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Back     alignment and structure
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Back     alignment and structure
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Back     alignment and structure
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Back     alignment and structure
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Back     alignment and structure
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Back     alignment and structure
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 589
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 1e-05
d1jm7a_103 g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie 2e-04
d1t1ha_78 g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre 0.001
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 30/202 (14%), Positives = 57/202 (28%), Gaps = 20/202 (9%)

Query: 170 WDSSPPCMADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATY 229
                    ++ R   K        +   L     +    L +    +   +    V+ Y
Sbjct: 102 VPDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNY 161

Query: 230 SPASLQNGKGAIGAIGGGKPAMNGEVEKGLLTLI-SSDSPGLQVCDPNGRWYLADGGSAP 288
            P    +    + A            + G + L+   D         +G+W         
Sbjct: 162 PPCPKPDLIKGLRA----------HTDAGGIILLFQDDKVSGLQLLKDGQWIDVP--PMR 209

Query: 289 GDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLMPQGNAILDCSP-- 346
             +++  G  L   T G   + ++R     V     G R SLA    P  +A++  +P  
Sbjct: 210 HSIVVNLGDQLEVITNGKYKSVMHR-----VIAQKDGARMSLASFYNPGSDAVIYPAPAL 264

Query: 347 IAAAGHVIPQSYVPISVSQFMD 368
           +        Q Y       +M 
Sbjct: 265 VEKEAEENKQVYPKFVFDDYMK 286
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query589
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1wgma_98 Ubiquitin conjugation factor E4A {Human (Homo sapi 99.16
d2c2la280 STIP1 homology and U box-containing protein 1, STU 99.1
d1t1ha_78 E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi 98.96
d1jm7b_97 bard1 RING domain {Human (Homo sapiens) [TaxId: 96 98.35
d2baya156 Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac 98.23
d1jm7a_103 brca1 RING domain {Human (Homo sapiens) [TaxId: 96 98.11
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 97.16
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 96.95
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 96.72
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 96.05
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 94.06
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 93.89
d1ur6b_52 Not-4 N-terminal RING finger domain {Human (Homo s 92.48
d3dplr188 RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase 91.71
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 86.15
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 84.85
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 83.01
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.2e-57  Score=466.10  Aligned_cols=297  Identities=16%  Similarity=0.189  Sum_probs=237.6

Q ss_pred             ccCCCCccchhhccCCCCCCcccCCCCCCCCCCCCCCCcceEeCCCCCCCCCchHHHHHHHHHhhhhcCcEEEEEcCCCC
Q 007796           50 THAPRQAIPIAAAADHAIGPVVVPISVEPPVATTMLPRVRLSDVAPYDGAPAGPYLKAVEALSGSLMRHNAAVIELGSED  129 (589)
Q Consensus        50 ~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~a~IPvIDLs~l~~~ds~~r~~~v~~L~~A~~~~GFF~L~nhGV~  129 (589)
                      .+-..++|..+|-+..-++.+..   ........+..+||||||+.+.+++++.|++++++|.+||+++|||||.||||+
T Consensus        11 ~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~   87 (349)
T d1gp6a_          11 KSGIISIPKEYIRPKEELESIND---VFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIP   87 (349)
T ss_dssp             HTTCSSCCGGGSCCHHHHTTCCC---HHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCC
T ss_pred             hCCCccCCHhhcCChhhcCCCCc---cccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCC
Confidence            44556677766543333322111   111233456779999999999988888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCcccCCCC----CCc---ccccccCCcC----CC------------------CCCCCh----HH
Q 007796          130 AAIMRCGLEAARLYFRTKSQTVGK----GSR---GVYMYRAGRA----LE------------------DWDSSP----PC  176 (589)
Q Consensus       130 ~ell~~a~~~ar~FF~LP~Ee~~~----~~r---GyY~~~~ge~----ld------------------dWP~~P----~~  176 (589)
                      .+++++++++++.||+||.|++.+    ...   ++|.....+.    .+                  -||..+    +.
T Consensus        88 ~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f~e~  167 (349)
T d1gp6a_          88 ADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEA  167 (349)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccchHHHH
Confidence            999999999999999999987321    111   1122211110    00                  177663    78


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhhhhcCCCCCCCCccceEEEeeeCCCCCCCCCCcccccCCCCCCCCCccc
Q 007796          177 MADIFRCMGKAARAALFAIARHLRLRSDVFNHLLDDTPLPANEVSSSVLVATYSPASLQNGKGAIGAIGGGKPAMNGEVE  256 (589)
Q Consensus       177 m~~y~~~m~kla~~LL~aIA~~LGL~~~~F~~~ld~~pl~~~e~~s~lrll~YPp~~~~~~~~~~y~~G~g~~~~~~HTD  256 (589)
                      +.+|+++|.+++..||++||++||+++++|.+.+...    .+..+.+|++|||+++.....          .++++|||
T Consensus       168 ~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~----~~~~~~lrl~~Yp~~~~~~~~----------~g~~~HtD  233 (349)
T d1gp6a_         168 TSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGL----EELLLQMKINYYPKCPQPELA----------LGVEAHTD  233 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHH----HHCEEEEEEEEECCCSSTTTC----------CSEEEECC
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccc----cccceeeeecccccccchhhc----------cccccCCC
Confidence            9999999999999999999999999999999877431    112358999999998754321          35899999


Q ss_pred             CceEEEEecCC-CccceEcCCCceEEccCCCCCCcEEEEchhhhHHHhCCCCCCccceeccCCCCCCCCCCceEEEEeee
Q 007796          257 KGLLTLISSDS-PGLQVCDPNGRWYLADGGSAPGDLLLITGKALSHATAGLRPAALYRAAPDFVSCSNGGGRTSLAFRLM  335 (589)
Q Consensus       257 ~GlLTLL~qD~-~GLQV~~~~G~Wi~Vpp~~~pg~lVVNvGD~Le~lTnG~lkStlHRVv~p~~~~~~~~~R~SiafF~~  335 (589)
                      +|+||||+||. +||||+. +|+|++|++.  +|++|||+||+|++||||+|+||+|||+.+     .+.+||||+||++
T Consensus       234 ~g~lTlL~q~~~~GLqv~~-~g~W~~V~p~--~~a~vVNvGD~l~~~TnG~~~St~HRVv~~-----~~~~R~Si~~F~~  305 (349)
T d1gp6a_         234 VSALTFILHNMVPGLQLFY-EGKWVTAKCV--PDSIVMHIGDTLEILSNGKYKSILHRGLVN-----KEKVRISWAVFCE  305 (349)
T ss_dssp             CSSEEEEEECSCCCEEEEE-TTEEEECCCC--TTCEEEEECHHHHHHTTTSSCCCCEEECCC-----SSCCEEEEEEEEE
T ss_pred             CcceEEEeccCCcceeeec-CCceEEccCC--CCCeeeeHHhHHHHHhCCCccCcCccccCC-----CCCCeEEEEEEec
Confidence            99999999996 9999985 7999999998  999999999999999999999999999875     3578999999999


Q ss_pred             cCCCcEE-ecCcccccCCCCCCCCCCccHHHHHHHHHH
Q 007796          336 PQGNAIL-DCSPIAAAGHVIPQSYVPISVSQFMDDLSA  372 (589)
Q Consensus       336 P~~DavI-~Plp~~vag~~~p~~y~pit~~df~~~r~~  372 (589)
                      |+.|++| .|+++|+.. +.|++|++||++||++.|+.
T Consensus       306 p~~d~~i~~pl~~~v~~-~~p~~y~~~t~~e~~~~rl~  342 (349)
T d1gp6a_         306 PPKDKIVLKPLPEMVSV-ESPAKFPPRTFAQHIEHKLF  342 (349)
T ss_dssp             CCTTTCEECCCGGGCCS-SSCCSSCCEEHHHHHHHHHH
T ss_pred             CCCcceeecCCHHHcCC-CCCCCCCCccHHHHHHHHHh
Confidence            9999864 899999954 67899999999999998874
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure