Citrus Sinensis ID: 007818
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 588 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | yes | no | 1.0 | 0.863 | 0.645 | 0.0 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.982 | 0.783 | 0.405 | 1e-140 | |
| Q9LSB8 | 687 | Putative pentatricopeptid | no | no | 0.986 | 0.844 | 0.395 | 1e-128 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.938 | 0.744 | 0.389 | 1e-124 | |
| Q9C866 | 570 | Pentatricopeptide repeat- | no | no | 0.928 | 0.957 | 0.413 | 1e-120 | |
| Q9SIT7 | 697 | Pentatricopeptide repeat- | no | no | 0.940 | 0.793 | 0.390 | 1e-118 | |
| O23337 | 722 | Pentatricopeptide repeat- | no | no | 0.913 | 0.743 | 0.382 | 1e-118 | |
| Q9LUJ2 | 842 | Pentatricopeptide repeat- | no | no | 0.977 | 0.682 | 0.387 | 1e-117 | |
| Q9LS72 | 600 | Pentatricopeptide repeat- | no | no | 0.891 | 0.873 | 0.373 | 1e-109 | |
| Q9LNU6 | 760 | Pentatricopeptide repeat- | no | no | 0.986 | 0.763 | 0.353 | 1e-109 |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/590 (64%), Positives = 465/590 (78%), Gaps = 2/590 (0%)
Query: 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
M I GLI FA SRLIAFCA+SES+ LDY KIL ++NPN FSWNV IRGF E+ +
Sbjct: 76 MIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPK 135
Query: 61 EAVDLYKQMLRNG--GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
E+ LYKQMLR+G +RPD+FTYP+LFKVCA L L LG+ I GHVLKL ++ +VHN
Sbjct: 136 ESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHN 195
Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
A IH+F SCGD+ A VFDES VR+LVSWN LING+ + G +AI +++ M+ E V+P
Sbjct: 196 ASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKP 255
Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
D+VTMIG+VS+C+ L DLN G+E + Y+ E+GL +T+PL NALMDM+ KCG + A IF
Sbjct: 256 DDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIF 315
Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
D++ +T+VS TTMI GYA+ G LD++RK+FDD+ EK VV WNA+IGG VQAKR ++ALA
Sbjct: 316 DNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALA 375
Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
LF EMQ + KPD +T +HCLSACSQLGALD GIWIHR+IEK + +LNV LGT+LVDMYA
Sbjct: 376 LFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYA 435
Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
KCGNI++AL VFH + RNSLTYTAIIGGLALHG A AISYF+EMI G+ PDEITF+G
Sbjct: 436 KCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIG 495
Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
+LSACCHGG++ GR YF+QM S F L+P+LKHYS MVDLLGR+GLLEEA++L+ SMPM
Sbjct: 496 LLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPME 555
Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
AD VWGAL F CR+HGNV +GE+AA KLLELDP DSGIYVLL MY ++NMWE+A + R
Sbjct: 556 ADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRAR 615
Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
+MM ERGVEK PGCSSIEVNG++ EFIVRDKS PE E+IYD L L RH
Sbjct: 616 RMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHM 665
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Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust.
Identities = 235/579 (40%), Positives = 368/579 (63%), Gaps = 1/579 (0%)
Query: 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
M TG S ++ S+L A A+S +L+Y K+ + PNSF+WN IR +
Sbjct: 53 MIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPV 112
Query: 61 EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
++ + M+ P+ +T+P L K A + LG + G +K D++V N++
Sbjct: 113 LSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSL 172
Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
IH + SCGDL AC VF +++VSWNS+INGFV+ G P +A+ LF+ M+ E V+
Sbjct: 173 IHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASH 232
Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
VTM+G++SACA++ +L GR++ YI E+ + + + LANA++DMY KCG +E A+ +FD+
Sbjct: 233 VTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDA 292
Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
M K V+ TTM+ GYA + AR++ + +P+K +V WNA+I Y Q + EAL +F
Sbjct: 293 MEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVF 352
Query: 301 HEMQ-ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
HE+Q +K + +T V LSAC+Q+GAL+ G WIH +I+K +N + +AL+ MY+K
Sbjct: 353 HELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSK 412
Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
CG++ K+ +VF+ + +R+ ++A+IGGLA+HG +A+ F +M + P+ +TF +
Sbjct: 413 CGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNV 472
Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
AC H GLVDE F QM S + + P+ KHY+C+VD+LGRSG LE+A + I +MP+
Sbjct: 473 FCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPP 532
Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
VWGAL AC++H N+++ E A +LLEL+P++ G +VLL+N+Y WE ++RK
Sbjct: 533 STSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRK 592
Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
M G++K PGCSSIE++G+++EF+ D +HP E++Y
Sbjct: 593 HMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVY 631
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 232/587 (39%), Positives = 362/587 (61%), Gaps = 7/587 (1%)
Query: 7 ISHGFAPS-----RLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
I+ G AP+ +L F ++ Y K+ + P+ WN I+G+ + E
Sbjct: 58 ITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGE 117
Query: 62 AVDLYKQMLRNGGTRPDNFTYPLLFK-VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
V LY ML+ G T PD+ T+P L + G G ++ HV+K G ++YV NA+
Sbjct: 118 GVRLYLNMLKEGVT-PDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNAL 176
Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
+ ++ CG + +A VFD C ++ SWN +I+G+ R E+I L +M+ V P
Sbjct: 177 VKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTS 236
Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
VT++ ++SAC++++D +L + +H Y+SE ++ L NAL++ Y CG+++ A IF S
Sbjct: 237 VTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRS 296
Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
M + V+S T+++ GY + G L +AR FD +P + + W +I GY++A E+L +F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356
Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
EMQ+ G+ PD T V L+AC+ LG+L+ G WI +I+K +VV+G AL+DMY KC
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416
Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
G KA +VFH+M +R+ T+TA++ GLA +G+ +AI F +M + + PD+IT+LG+L
Sbjct: 417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476
Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
SAC H G+VD+ RK+FA+M S R+ P L HY CMVD+LGR+GL++EA +++R MPM +
Sbjct: 477 SACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPN 536
Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
+VWGAL A RLH + + E AA K+LEL+P + +Y LL N+Y W++ +VR+
Sbjct: 537 SIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRK 596
Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
+ + ++KTPG S IEVNG +EF+ DKSH + E+IY L +L +
Sbjct: 597 IVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQE 643
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 241/618 (38%), Positives = 360/618 (58%), Gaps = 66/618 (10%)
Query: 1 MTITGLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKM 59
M GL + +A S+LI FC +S + L Y + +Q PN WN RG +
Sbjct: 56 MIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDP 115
Query: 60 REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119
A+ LY M+ + G P+++T+P + K CA G +I GHVLKLG D+D+YVH +
Sbjct: 116 VSALKLYVCMI-SLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTS 174
Query: 120 VIHVFVSCGDLGLACNVFDESC-------------------------------VRNLVSW 148
+I ++V G L A VFD+S V+++VSW
Sbjct: 175 LISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSW 234
Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
N++I+G+ +G +EA+ LF+DM V PDE TM+ +VSACAQ + LGR++H +I +
Sbjct: 235 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD 294
Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
G + + NAL+D+Y KCG+LE+A C +
Sbjct: 295 HGFGSNLKIVNALIDLYSKCGELETA--------------CG-----------------L 323
Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
F+ LP K V+ WN +IGGY KEAL LF EM +G P+ VT + L AC+ LGA+
Sbjct: 324 FERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 383
Query: 329 DDGIWIHRFIEK--ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG 386
D G WIH +I+K + L T+L+DMYAKCG+I A QVF+ + ++ ++ A+I
Sbjct: 384 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIF 443
Query: 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS 446
G A+HG+A + FS M +G+ PD+ITF+G+LSAC H G++D GR F M+ ++++
Sbjct: 444 GFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMT 503
Query: 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506
PKL+HY CM+DLLG SGL +EAE++I M M D V+W +L AC++HGNV +GE A
Sbjct: 504 PKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAEN 563
Query: 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIV 566
L++++P++ G YVLL+N+Y + W E K R ++ ++G++K PGCSSIE++ +++EFI+
Sbjct: 564 LIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFII 623
Query: 567 RDKSHPELEQIYDCLVQL 584
DK HP +IY L ++
Sbjct: 624 GDKFHPRNREIYGMLEEM 641
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C866|PPR65_ARATH Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana GN=PCMP-E55 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1111), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/554 (41%), Positives = 348/554 (62%), Gaps = 8/554 (1%)
Query: 38 VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
+Q P+ +N ++ + + + L+ + LR G PDNFT P++ K L
Sbjct: 6 LQTPSLLMYNKMLKSLADGKSFTKVLALFGE-LRGQGLYPDNFTLPVVLKSIGRLRKVIE 64
Query: 98 GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
G ++ G+ +K G + D YV N+++ ++ S G + + VFDE R++VSWN LI+ +V
Sbjct: 65 GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124
Query: 158 SGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
+G +AI +F+ M E ++ DE T++ +SAC+ L++L +G I+ ++ + ++V
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVV-TEFEMSVR 183
Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
+ NAL+DM+ KCG L+ A +FDSM +K V T+M+ GY G +D AR +F+ P K
Sbjct: 184 IGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKD 243
Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
VV W A++ GYVQ R EAL LF MQ GI+PD V L+ C+Q GAL+ G WIH
Sbjct: 244 VVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHG 303
Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
+I + ++ V+GTALVDMYAKCG I AL+VF+E+ ER++ ++T++I GLA++G +
Sbjct: 304 YINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGR 363
Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
A+ + EM VG+ D ITF+ +L+AC HGG V EGRK F M+ + PK +H SC++
Sbjct: 364 ALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLI 423
Query: 457 DLLGRSGLLEEAEQLIRSMPMAAD---VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
DLL R+GLL+EAE+LI M +D V V+ +L A R +GNV I ER A KL +++
Sbjct: 424 DLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVS 483
Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK--SH 571
DS + LLA++Y +N WE+ VR+ M++ G+ K PGCSSIE++G+ +EFIV D SH
Sbjct: 484 DSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSH 543
Query: 572 PELEQIYDCLVQLT 585
P++++I L Q T
Sbjct: 544 PKMDEINSMLHQTT 557
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust.
Identities = 219/561 (39%), Positives = 338/561 (60%), Gaps = 8/561 (1%)
Query: 28 LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
LD + ++ + +WN + GF + + EA+ Y M+ G + +++ +
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL-CYFAMMHKEGFVLNEYSFASVLS 160
Query: 88 VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
C+ L G ++ + K F D+Y+ +A++ ++ CG++ A VFDE RN+VS
Sbjct: 161 ACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVS 220
Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
WNSLI F ++G EA+ +F+ M RVEPDEVT+ ++SACA L + +G+E+H +
Sbjct: 221 WNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVV 280
Query: 208 ESG-LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
++ L + L+NA +DMY KC +++ A IFDSM + V++ T+MI GYA AR
Sbjct: 281 KNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAAR 340
Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
+F + E+ VV WNA+I GY Q ++EAL+LF ++ + P + + L AC+ L
Sbjct: 341 LMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLA 400
Query: 327 ALDDGIWIHRFIEKENFNL------NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
L G+ H + K F ++ +G +L+DMY KCG + + VF +M ER+ ++
Sbjct: 401 ELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVS 460
Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
+ A+I G A +G +A+ F EM+ G PD IT +G+LSAC H G V+EGR YF+ M+
Sbjct: 461 WNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMT 520
Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
F ++P HY+CMVDLLGR+G LEEA+ +I MPM D V+WG+L AC++H N+++G
Sbjct: 521 RDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLG 580
Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
+ A KLLE++P +SG YVLL+NMY + WE+ VRK M + GV K PGCS I++ G
Sbjct: 581 KYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGH 640
Query: 561 LYEFIVRDKSHPELEQIYDCL 581
+ F+V+DKSHP +QI+ L
Sbjct: 641 DHVFMVKDKSHPRKKQIHSLL 661
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/538 (38%), Positives = 325/538 (60%), Gaps = 1/538 (0%)
Query: 41 PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYE 100
P S +N +R + + R + L+ Q +R+ G R D F++ + K + + F G E
Sbjct: 74 PESIVFNPFLRDLSRSSEPRATI-LFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGME 132
Query: 101 IFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160
+ G K+ D +V + ++ SCG + A NVFDE R++V+WN++I + R G
Sbjct: 133 LHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGL 192
Query: 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANA 220
EA +LF +M+ V PDE+ + +VSAC + ++ R I+ ++ E+ + + L A
Sbjct: 193 VDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTA 252
Query: 221 LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPW 280
L+ MY G ++ A E F M + + T M+ GY+K G LD A+ IFD +K +V W
Sbjct: 253 LVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCW 312
Query: 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEK 340
+I YV++ +EAL +F EM +GIKPD V+ +SAC+ LG LD W+H I
Sbjct: 313 TTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHV 372
Query: 341 ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISY 400
+ + AL++MYAKCG + VF +MP RN ++++++I L++HG+A DA+S
Sbjct: 373 NGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSL 432
Query: 401 FSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460
F+ M + P+E+TF+G+L C H GLV+EG+K FA M+ + ++PKL+HY CMVDL G
Sbjct: 433 FARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFG 492
Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520
R+ LL EA ++I SMP+A++VV+WG+L ACR+HG + +G+ AA ++LEL+P G VL
Sbjct: 493 RANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVL 552
Query: 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
++N+Y WE+ +R++MEE+ V K G S I+ NG +EF++ DK H + +IY
Sbjct: 553 MSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIY 610
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 422 bits (1085), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/578 (38%), Positives = 343/578 (59%), Gaps = 3/578 (0%)
Query: 11 FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQML 70
F + L+ F A E LD K+ + N SW I G+ ++AVDL+ +M+
Sbjct: 170 FVQNSLVHFYA--ECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMV 227
Query: 71 RNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130
R+ P++ T + CA L G +++ + G +V+ + +A++ +++ C +
Sbjct: 228 RDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAI 287
Query: 131 GLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190
+A +FDE NL N++ + +VR G REA+ +F M V PD ++M+ +S+C
Sbjct: 288 DVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSC 347
Query: 191 AQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCT 250
+QL ++ G+ H Y+ +G + NAL+DMY+KC + ++A IFD M NKTVV+
Sbjct: 348 SQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWN 407
Query: 251 TMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT-GIK 309
+++ GY + G +D A + F+ +PEK +V WN II G VQ +EA+ +F MQ+ G+
Sbjct: 408 SIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVN 467
Query: 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQV 369
D VT + SAC LGALD WI+ +IEK L+V LGT LVDM+++CG+ A+ +
Sbjct: 468 ADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSI 527
Query: 370 FHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429
F+ + R+ +TA IG +A+ G A AI F +MI GL PD + F+G L+AC HGGLV
Sbjct: 528 FNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLV 587
Query: 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489
+G++ F M + +SP+ HY CMVDLLGR+GLLEEA QLI MPM + V+W +L
Sbjct: 588 QQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLA 647
Query: 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549
ACR+ GNV + AA K+ L P+ +G YVLL+N+Y + W + KVR M+E+G+ K
Sbjct: 648 ACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKP 707
Query: 550 PGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
PG SSI++ G +EF D+SHPE+ I L ++++
Sbjct: 708 PGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQR 745
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/568 (37%), Positives = 323/568 (56%), Gaps = 44/568 (7%)
Query: 21 AISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF 80
A+S + + ++ VQ PN N IR + + +A ++ +M R G DNF
Sbjct: 60 ALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQR-FGLFADNF 118
Query: 81 TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGL--ACNVFD 138
TYP L K C+ + + H+ KLG D+YV NA+I + CG LG+ A +F+
Sbjct: 119 TYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFE 178
Query: 139 ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198
+ R+ VSWNS++ G V++G R+A RLF DE+ ++S
Sbjct: 179 KMSERDTVSWNSMLGGLVKAGELRDARRLF----------DEMPQRDLIS---------- 218
Query: 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258
W N ++D Y +C ++ A E+F+ M + VS +TM++GY+K
Sbjct: 219 -----W--------------NTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSK 259
Query: 259 FGFLDIARKIFDD--LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316
G +++AR +FD LP K VV W II GY + KEA L +M A+G+K DA +
Sbjct: 260 AGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVI 319
Query: 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER 376
L+AC++ G L G+ IH +++ N N + AL+DMYAKCGN+ KA VF+++P++
Sbjct: 320 SILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKK 379
Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436
+ +++ ++ GL +HG +AI FS M G+ PD++TF+ +L +C H GL+DEG YF
Sbjct: 380 DLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYF 439
Query: 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGN 496
M ++ L P+++HY C+VDLLGR G L+EA +++++MPM +VV+WGAL ACR+H
Sbjct: 440 YSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNE 499
Query: 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIE 556
V I + L++LDP D G Y LL+N+Y + WE +R M+ GVEK G SS+E
Sbjct: 500 VDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVE 559
Query: 557 VNGLLYEFIVRDKSHPELEQIYDCLVQL 584
+ ++EF V DKSHP+ +QIY L L
Sbjct: 560 LEDGIHEFTVFDKSHPKSDQIYQMLGSL 587
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LNU6|PPR53_ARATH Pentatricopeptide repeat-containing protein At1g20230 OS=Arabidopsis thaliana GN=PCMP-H21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 395 bits (1015), Expect = e-109, Method: Compositional matrix adjust.
Identities = 220/622 (35%), Positives = 341/622 (54%), Gaps = 42/622 (6%)
Query: 4 TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
+G + G+ ++LIA + S + +L ++ +P +S++ I + +++
Sbjct: 44 SGAQNDGYISAKLIA--SYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQSI 101
Query: 64 DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
++ +M +G PD+ P LFKVCA L +G +I G D+D +V ++ H+
Sbjct: 102 GVFSRMFSHG-LIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHM 160
Query: 124 FVSCGDLGLACNVFD-----------------------ESCVR------------NLVSW 148
++ CG +G A VFD E VR N+VSW
Sbjct: 161 YMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSW 220
Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
N +++GF RSG+ +EA+ +F+ + PD+VT+ ++ + E LN+GR IH Y+ +
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280
Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
GL + +A++DMY K G + +F+ C I G ++ G +D A ++
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340
Query: 269 FDDLPEKY----VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ 324
F+ E+ VV W +II G Q + EAL LF EMQ G+KP+ VT L AC
Sbjct: 341 FELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGN 400
Query: 325 LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI 384
+ AL G H F + + NV +G+AL+DMYAKCG I + VF+ MP +N + + ++
Sbjct: 401 IAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSL 460
Query: 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444
+ G ++HGKA + +S F ++ L PD I+F +LSAC GL DEG KYF MS +
Sbjct: 461 MNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYG 520
Query: 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAA 504
+ P+L+HYSCMV+LLGR+G L+EA LI+ MP D VWGAL +CRL NV + E AA
Sbjct: 521 IKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAA 580
Query: 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEF 564
KL L+P++ G YVLL+N+Y MW E +R ME G++K PGCS I+V +Y
Sbjct: 581 EKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTL 640
Query: 565 IVRDKSHPELEQIYDCLVQLTR 586
+ DKSHP+++QI + + ++++
Sbjct: 641 LAGDKSHPQIDQITEKMDEISK 662
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 588 | ||||||
| 359478743 | 642 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.915 | 0.724 | 0.0 | |
| 147866113 | 599 | hypothetical protein VITISV_006669 [Viti | 0.974 | 0.956 | 0.709 | 0.0 | |
| 449476227 | 681 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.998 | 0.861 | 0.691 | 0.0 | |
| 449442687 | 681 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.861 | 0.691 | 0.0 | |
| 224057446 | 668 | predicted protein [Populus trichocarpa] | 0.988 | 0.869 | 0.691 | 0.0 | |
| 357469751 | 1026 | Pentatricopeptide repeat-containing prot | 1.0 | 0.573 | 0.641 | 0.0 | |
| 15227199 | 681 | protein slow growth 1 [Arabidopsis thali | 1.0 | 0.863 | 0.645 | 0.0 | |
| 87241257 | 971 | SAM (and some other nucleotide) binding | 0.962 | 0.582 | 0.641 | 0.0 | |
| 297821463 | 588 | pentatricopeptide repeat-containing prot | 0.969 | 0.969 | 0.625 | 0.0 | |
| 413934265 | 648 | hypothetical protein ZEAMMB73_462632 [Ze | 0.991 | 0.899 | 0.534 | 0.0 |
| >gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2336), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/588 (72%), Positives = 502/588 (85%)
Query: 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
M +TGLI GFA SRLIAFCAISE ++LDYCT ILFN +NPN+FSWNVAIRGFL++ R
Sbjct: 29 MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 88
Query: 61 EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
EAV LYK++L+ GT+PDN+TYPLLFK CA L L +G EI GHVL LGFD D++V NAV
Sbjct: 89 EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 148
Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
IH+ VSCGDL A +FD+SCVR+LVSWNS+ING+VR G+ EA+ +R+M++E ++PDE
Sbjct: 149 IHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDE 208
Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
VTMIG+VS+CAQLEDL+LGRE H YI E+GL LTVPLANALMDMY+KCG LESA ++FDS
Sbjct: 209 VTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDS 268
Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
M NKT+VS TTM+VGYA+ G LD+A K+FD++P+K VVPWNA+IGGYV A R KEALALF
Sbjct: 269 MTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALF 328
Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
+EMQA I PD VT V CLSACSQLGALD GIWIH +IEK +LNV LGTAL+DMYAKC
Sbjct: 329 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 388
Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
G I KA+QVF E+P RNSLT+TAII GLALHG A AI+YFSEMI +MPDE+TFLG+L
Sbjct: 389 GKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL 448
Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
SACCHGGLV+EGRKYF+QMSS F LSPKLKHYSCMVDLLGR+GLLEEAE+LI+SMP+ AD
Sbjct: 449 SACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEAD 508
Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
VVWGALFFACR+HGNV +GERAA KLL++DP DSGIYVLLANMY ++ MW+EAGK RK+
Sbjct: 509 AVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKL 568
Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
M +RGVEKTPGCSSIEVNG++YEFIVRDKSHP+ EQIY+CL+QLTR
Sbjct: 569 MRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQL 616
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/588 (70%), Positives = 490/588 (83%), Gaps = 15/588 (2%)
Query: 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
M +TGLI GFA SRLIAFCAISE ++LDYCT ILFN +NPN+FSWNVAIRGFL++ R
Sbjct: 1 MVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPR 60
Query: 61 EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
EAV LYK++L+ GT+PDN+TYPLLFK CA L L +G EI GHVL LGFD D++V NAV
Sbjct: 61 EAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAV 120
Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
IH+ VSCGDL A +FD+SCVR+LVSWNS+ING+VR G+ EA+ +R+M++E ++PDE
Sbjct: 121 IHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDE 180
Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
VTMIG+VS+CAQLEDL+LGRE H YI E+GL LTVPLANALMDMY+KCG LESA ++FDS
Sbjct: 181 VTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDS 240
Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
M NKT+VS TTM+ FD++P+K VVPWNA+IGGYV A R KEALALF
Sbjct: 241 MTNKTMVSWTTML---------------FDEMPDKDVVPWNAMIGGYVHANRGKEALALF 285
Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
+EMQA I PD VT V CLSACSQLGALD GIWIH +IEK +LNV LGTAL+DMYAKC
Sbjct: 286 NEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKC 345
Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
G I KA+QVF E+P RNSLT+TAII GLALHG A AI+YFSEMI +MPDE+TFLG+L
Sbjct: 346 GKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLL 405
Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
SACCHGGLV+EGRKYF+QMSS F LSPKLKHYSCMVDLLGR+GLLEEAE+LI+SMP+ AD
Sbjct: 406 SACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEAD 465
Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
VVWGALFFACR+HGNV +GERAA KLL++DP DSGIYVLLANMY ++ MW+EAGK RK+
Sbjct: 466 AVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKL 525
Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
M +RGVEKTPGCSSIEVNG++YEFIVRDKSHP+ EQIY+CL+QLTR
Sbjct: 526 MRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQL 573
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/587 (69%), Positives = 482/587 (82%)
Query: 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
M TGLIS GFA SRL+AFCAISE +NLDYC KIL N N N FSWN+AIRG++E+
Sbjct: 77 MISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPI 136
Query: 61 EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
AV LY+ MLR G PDN+TYPLLFKVCA L + EI GHV++LGFD D++VHNA+
Sbjct: 137 NAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAI 196
Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
IHV VSCG+L A +FDESCVR+LVSWNS+ING+VR G EA L+ M V PDE
Sbjct: 197 IHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDE 256
Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
VTMIG+VSA AQLE+L LGR++H I E GL LTVPLANALMDMY+KC +E+A+ +F++
Sbjct: 257 VTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFEN 316
Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
M KTVVS TTM++GYAKFG L+ A ++F+++PEK VV WNA+IGG+VQAKRSKEALALF
Sbjct: 317 MTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALF 376
Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
HEMQA+ + PD +T V+CLSACSQLGALD GIW+H +++K N +NV LGTALVDMYAKC
Sbjct: 377 HEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKC 436
Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
GNI KA+QVF EMP RNSLT+TAII GLALHG+ AISYFSEMI +GL+PDEITF+G+L
Sbjct: 437 GNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVL 496
Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
SACCHGGLVD+GR YF QM+S + +SPKLKHYSC+VDLLGR+G LEEAE+LIRSMP D
Sbjct: 497 SACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPD 556
Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
VVWGALFF R+HGNV +GERAA KLLELDP D GIYVLLANMY D+NMWE+A KVRKM
Sbjct: 557 AVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKM 616
Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
MEERGVEKTPGCSSIE+NGL+Y+FI+RDKSHP+ E+IY+CL +LTR
Sbjct: 617 MEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIYECLTRLTRQ 663
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/587 (69%), Positives = 482/587 (82%)
Query: 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
M TGLIS GFA SRL+AFCAISE +NLDYC KIL N N N FSWN+AIRG++E+
Sbjct: 77 MISTGLISDGFALSRLVAFCAISEWRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPI 136
Query: 61 EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
AV LY+ MLR G PDN+TYPLLFKVCA L + EI GHV++LGFD D++VHNA+
Sbjct: 137 NAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAI 196
Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
IHV VSCG+L A +FDESCVR+LVSWNS+ING+VR G EA L+ M V PDE
Sbjct: 197 IHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDE 256
Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
VTMIG+VSA AQLE+L LGR++H I E GL LTVPLANALMDMY+KC +E+A+ +F++
Sbjct: 257 VTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFEN 316
Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
M KTVVS TTM++GYAKFG L+ A ++F+++PEK VV WNA+IGG+VQAKRSKEALALF
Sbjct: 317 MTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALF 376
Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
HEMQA+ + PD +T V+CLSACSQLGALD GIW+H +++K N +NV LGTALVDMYAKC
Sbjct: 377 HEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKC 436
Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
GNI KA+QVF EMP RNSLT+TAII GLALHG+ AISYFSEMI +GL+PDEITF+G+L
Sbjct: 437 GNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVL 496
Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
SACCHGGLVD+GR YF QM+S + +SPKLKHYSC+VDLLGR+G LEEAE+LIRSMP D
Sbjct: 497 SACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPD 556
Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
VVWGALFF R+HGNV +GERAA KLLELDP D GIYVLLANMY D+NMWE+A KVRKM
Sbjct: 557 AVVWGALFFGSRIHGNVHMGERAASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKM 616
Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
MEERGVEKTPGCSSIE+NGL+Y+FI+RDKSHP+ E+IY+CL +LTR
Sbjct: 617 MEERGVEKTPGCSSIEMNGLVYDFIIRDKSHPQSEKIYECLTRLTRQ 663
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa] gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/581 (69%), Positives = 474/581 (81%)
Query: 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
M +TGLI GFA SRLI+FCAISES+NLDYC KIL N+QNPN FSWN IRG +E+ +
Sbjct: 76 MILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNPNVFSWNAVIRGCVESENPQ 135
Query: 61 EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
+ + LYK+ML G RPDN+TY LFKVCA+L L ++G+EI G VLK+GFD DMY++N +
Sbjct: 136 KGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGI 195
Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
IH+ VS G+ GLA VFDE CVR+LVSWNSLING+VR PREA+ +++ M E V+PDE
Sbjct: 196 IHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDE 255
Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
VTMIG+VSACAQLE L LGREIH YI ESGL L + L NALMDMYVKCG LE+ + +FD+
Sbjct: 256 VTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDN 315
Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
M KTVVS TTMIVGYAK G LD+A K+F D+PEK VV WNA+IG VQA S EAL LF
Sbjct: 316 MRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELF 375
Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
EMQ + +KPD VT +HCLSACSQLGALD G+W H +I+K N +L+V LGTAL+DMYAKC
Sbjct: 376 REMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNLSLDVALGTALIDMYAKC 435
Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
GN+ KALQVF+EMP RNSLT+TAIIGGLAL+G DAI YFS+MI GLMPDEITFLG+L
Sbjct: 436 GNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEITFLGVL 495
Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
+ACCHGGLV+EGRKYF QM S F LSP+ KHYSCMV+LLGR+GLLEEAE+LI++MPM AD
Sbjct: 496 TACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKTMPMEAD 555
Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
+VWGALFFAC +H N+ IGERAA KLL+LDP DSGIYVLLANMYR++ WEEA +RKM
Sbjct: 556 AMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIYVLLANMYREAGKWEEAQNIRKM 615
Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCL 581
M ERGVEKTPG SSIEVNG++ EFIVRDKSHP+ EQIY+C
Sbjct: 616 MMERGVEKTPGSSSIEVNGIINEFIVRDKSHPQSEQIYECF 656
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 816 bits (2107), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/588 (64%), Positives = 479/588 (81%)
Query: 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
M TGLI +GFA SRL+AFCA+SESK LDYCT+IL+ ++ N FSWN AIRG++E+G +
Sbjct: 80 MVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIE 139
Query: 61 EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
LYK+ML G +PDN TYPLL K C LG + GHVLK GF+ D++VHNA
Sbjct: 140 GGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNAS 199
Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
I + +SCG+L +A +VF++S VR+LV+WNS+I G V+ G EAI+++++M+ E+V P+E
Sbjct: 200 ITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNE 259
Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
+TMIGM+S+C+Q++DLNLG+E H YI E GL T+PL NALMDMYVKCG+L +A +FD+
Sbjct: 260 ITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDN 319
Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
M KT+VS TTM++GYA+FGFLD+AR+I +PEK VVPWNAII G VQAK+ KEALALF
Sbjct: 320 MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALF 379
Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
HEMQ I+PD VT V+CLSACSQLGALD GIWIH +IE+ +++V LGTALVDMYAKC
Sbjct: 380 HEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKC 439
Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
GNIA+ALQVF E+P+RN LT+TA+I GLALHG A DA+SYFS+MI +G++PDEITFLG+L
Sbjct: 440 GNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVL 499
Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
SACCHGGLV+EGRKYF++MSS F +SPKLKHYSCMVDLLGR+G LEEAE+L+++MPMAAD
Sbjct: 500 SACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAAD 559
Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
V GALFFACR++GNV IGER A KLLE+DPQDSG YVLLA+MY ++ MW+EA RK+
Sbjct: 560 AAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKL 619
Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
M ++GVEKTPGCS +E+NG+++EF+VRD SHP+ E IY+CLV LT+
Sbjct: 620 MNDKGVEKTPGCSLVEINGIVHEFVVRDVSHPQSEWIYECLVTLTKQL 667
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana] gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22410, mitochondrial; Flags: Precursor gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana] gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana] gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana] gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/590 (64%), Positives = 465/590 (78%), Gaps = 2/590 (0%)
Query: 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
M I GLI FA SRLIAFCA+SES+ LDY KIL ++NPN FSWNV IRGF E+ +
Sbjct: 76 MIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPK 135
Query: 61 EAVDLYKQMLRNG--GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
E+ LYKQMLR+G +RPD+FTYP+LFKVCA L L LG+ I GHVLKL ++ +VHN
Sbjct: 136 ESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHN 195
Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
A IH+F SCGD+ A VFDES VR+LVSWN LING+ + G +AI +++ M+ E V+P
Sbjct: 196 ASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKP 255
Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
D+VTMIG+VS+C+ L DLN G+E + Y+ E+GL +T+PL NALMDM+ KCG + A IF
Sbjct: 256 DDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIF 315
Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
D++ +T+VS TTMI GYA+ G LD++RK+FDD+ EK VV WNA+IGG VQAKR ++ALA
Sbjct: 316 DNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALA 375
Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
LF EMQ + KPD +T +HCLSACSQLGALD GIWIHR+IEK + +LNV LGT+LVDMYA
Sbjct: 376 LFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYA 435
Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
KCGNI++AL VFH + RNSLTYTAIIGGLALHG A AISYF+EMI G+ PDEITF+G
Sbjct: 436 KCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIG 495
Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
+LSACCHGG++ GR YF+QM S F L+P+LKHYS MVDLLGR+GLLEEA++L+ SMPM
Sbjct: 496 LLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPME 555
Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
AD VWGAL F CR+HGNV +GE+AA KLLELDP DSGIYVLL MY ++NMWE+A + R
Sbjct: 556 ADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRAR 615
Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
+MM ERGVEK PGCSSIEVNG++ EFIVRDKS PE E+IYD L L RH
Sbjct: 616 RMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRHM 665
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase small; Tetratricopeptide-like helical [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 787 bits (2032), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/566 (64%), Positives = 463/566 (81%)
Query: 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
M TGLI +GFA SRL+AFCA+SESK LDYCT+IL+ ++ N FSWN AIRG++E+G +
Sbjct: 80 MVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIE 139
Query: 61 EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
LYK+ML G +PDN TYPLL K C LG + GHVLK GF+ D++VHNA
Sbjct: 140 GGFMLYKRMLLGGTLKPDNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNAS 199
Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
I + +SCG+L +A +VF++S VR+LV+WNS+I G V+ G EAI+++++M+ E+V P+E
Sbjct: 200 ITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEMEAEKVRPNE 259
Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
+TMIGM+S+C+Q++DLNLG+E H YI E GL T+PL NALMDMYVKCG+L +A +FD+
Sbjct: 260 ITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDN 319
Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
M KT+VS TTM++GYA+FGFLD+AR+I +PEK VVPWNAII G VQAK+ KEALALF
Sbjct: 320 MAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALF 379
Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
HEMQ I+PD VT V+CLSACSQLGALD GIWIH +IE+ +++V LGTALVDMYAKC
Sbjct: 380 HEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKC 439
Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
GNIA+ALQVF E+P+RN LT+TA+I GLALHG A DA+SYFS+MI +G++PDEITFLG+L
Sbjct: 440 GNIARALQVFEEIPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVL 499
Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
SACCHGGLV+EGRKYF++MSS F +SPKLKHYSCMVDLLGR+G LEEAE+L+++MPMAAD
Sbjct: 500 SACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAAD 559
Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
V GALFFACR++GNV IGER A KLLE+DPQDSG YVLLA+MY ++ MW+EA RK+
Sbjct: 560 AAVLGALFFACRVYGNVQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKL 619
Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIV 566
M ++GVEKTPGCS +E+NG+++EF++
Sbjct: 620 MNDKGVEKTPGCSLVEINGIVHEFVL 645
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297821463|ref|XP_002878614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324453|gb|EFH54873.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/590 (62%), Positives = 452/590 (76%), Gaps = 20/590 (3%)
Query: 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
M ITGL+ FA SRLIAFCA+SES+ L+YC KIL ++NPN+FSWNV IRGF E+ +
Sbjct: 1 MVITGLVLDPFASSRLIAFCALSESRYLNYCVKILKGIENPNAFSWNVTIRGFSESENPK 60
Query: 61 EAVDLYKQMLRNG--GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
+AV YKQMLR G +RPD+FTYP+LFKVCA L L LG+ I GHV KL ++ +VHN
Sbjct: 61 DAVLAYKQMLRRGCCESRPDHFTYPVLFKVCADLRLNSLGHMILGHVFKLRLELVSHVHN 120
Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
A IH+F SCG++ A VFDES VR+LVSWN LING+ + G +AI +++ M+ E V+P
Sbjct: 121 ASIHMFASCGEMENARKVFDESPVRDLVSWNCLINGYKKIGEGEKAIEVYKVMESEGVKP 180
Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
D+VTMIG+VS+CA L DLN G+E + Y+ +GL +T+PLANALMDM+ KCG + A IF
Sbjct: 181 DDVTMIGLVSSCAMLGDLNRGKEFYEYVKANGLRMTIPLANALMDMFSKCGDIHEARRIF 240
Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
D++ +T+VS K+FDD+ EK VV WNA+IGG VQAKRS++ALA
Sbjct: 241 DNLEKRTIVS------------------KLFDDMEEKDVVMWNAMIGGSVQAKRSQDALA 282
Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
LF EMQ + PD +T +HCLSACSQLGALD GIWIHR+IEK + +LNV LGT+LVDMYA
Sbjct: 283 LFQEMQTSNTDPDEITMIHCLSACSQLGALDVGIWIHRYIEKHSLSLNVALGTSLVDMYA 342
Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
KCGNI++AL VFH + RNSLTYTAIIGGLALHG A AISYF+EMI G+ PDEITF+G
Sbjct: 343 KCGNISEALCVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIG 402
Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
+LSACCHGG++ GR YF+QM S F L+P+LKHYS MVDLLGR+GLLEEA++L+ SMPM
Sbjct: 403 LLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADKLMESMPME 462
Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
AD VWGAL F CR+HGNV +GE+AA KLLELDP DSGIYVLL MY ++NMWE+A + R
Sbjct: 463 ADAAVWGALLFGCRMHGNVKLGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRAR 522
Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588
+MM ERGVEK PGCSSIEVNG++ EFIVRDKS PE E+IYDCL L H
Sbjct: 523 RMMNERGVEKIPGCSSIEVNGIVSEFIVRDKSRPESEKIYDCLHCLGTHM 572
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/597 (53%), Positives = 433/597 (72%), Gaps = 14/597 (2%)
Query: 3 ITGLIS-HGFAP--SRLIAFCAISES---KNLDYCTKILFNVQNP--NSFSWNVAIRGFL 54
++GL+S H +P RL+A A S+ + L + IL ++ +P ++F +N A R
Sbjct: 33 VSGLLSSHSTSPFIDRLVAAFAHSDPASPRPLLHALAILASLPSPPDSAFPYNAAFRALS 92
Query: 55 ETGKM----REAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGF 110
R + LY+ +L +G RPD+ T+P L K CA L R G + GHV KLGF
Sbjct: 93 LCPHQHLVDRHCLPLYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGF 152
Query: 111 DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRD 170
D++V NA +H + G + A +FDES VR++VSWN+LI G+VRSG PREA+ LF
Sbjct: 153 SADVFVVNAAMHFWSVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWR 212
Query: 171 MQLE--RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228
+ + V PDEVT+IG VS CAQ+ DL LG+ +H ++ G+ TV L NA+MDMYVKC
Sbjct: 213 LAEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKC 272
Query: 229 GKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288
G LE A +F+ + N+T VS TTMIVG+A+ G ++ AR +FD++PE+ V PWNA++ GYV
Sbjct: 273 GSLELANSVFERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYV 332
Query: 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348
Q K+ KEA+ALFHEMQ + + P+ +T V+ LSACSQLGAL+ G+W+H +I++ +L+V
Sbjct: 333 QNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVA 392
Query: 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVG 408
LGT+LVDMYAKCGNI KA+ VF+E+P +N+LT+T++I GLA HG A +AI YF MI +G
Sbjct: 393 LGTSLVDMYAKCGNIKKAICVFNEIPVQNALTWTSMICGLANHGHADEAIEYFQRMIDLG 452
Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
L PDEITF+G+LSACCH GLV+ GR++F+ M + + L K+KHYSCM+DLLGR+G L+EA
Sbjct: 453 LQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEA 512
Query: 469 EQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528
EQL+ +MPM D VVWGALFFACR+HGN+++GE+AAMKL+ELDP DSGIYVLLANMY ++
Sbjct: 513 EQLVNAMPMDPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEA 572
Query: 529 NMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585
NM ++A KVR MM GVEK PGCS IE+NG+++EFIV+DKSH + IYDCL ++T
Sbjct: 573 NMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHLDTNAIYDCLHEIT 629
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 588 | ||||||
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.998 | 0.861 | 0.646 | 1.1e-206 | |
| TAIR|locus:2060640 | 738 | OTP81 "ORGANELLE TRANSCRIPT PR | 0.982 | 0.783 | 0.405 | 6.6e-129 | |
| TAIR|locus:2093920 | 687 | AT3G15930 "AT3G15930" [Arabido | 0.984 | 0.842 | 0.395 | 2.6e-118 | |
| TAIR|locus:2206164 | 570 | AT1G31430 [Arabidopsis thalian | 0.928 | 0.957 | 0.413 | 3.3e-111 | |
| TAIR|locus:2130354 | 722 | AT4G14820 "AT4G14820" [Arabido | 0.971 | 0.790 | 0.374 | 5.3e-111 | |
| TAIR|locus:2054131 | 697 | SLO2 "AT2G13600" [Arabidopsis | 0.940 | 0.793 | 0.390 | 3.4e-109 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.977 | 0.775 | 0.376 | 1.3e-107 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.812 | 0.770 | 0.395 | 4.2e-95 | |
| TAIR|locus:2045580 | 559 | AT2G42920 [Arabidopsis thalian | 0.819 | 0.862 | 0.402 | 1.9e-92 | |
| TAIR|locus:2084963 | 661 | AT3G04750 "AT3G04750" [Arabido | 0.972 | 0.865 | 0.353 | 3e-92 |
| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1999 (708.7 bits), Expect = 1.1e-206, P = 1.1e-206
Identities = 381/589 (64%), Positives = 465/589 (78%)
Query: 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
M I GLI FA SRLIAFCA+SES+ LDY KIL ++NPN FSWNV IRGF E+ +
Sbjct: 76 MIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENPNIFSWNVTIRGFSESENPK 135
Query: 61 EAVDLYKQMLRNG--GTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118
E+ LYKQMLR+G +RPD+FTYP+LFKVCA L L LG+ I GHVLKL ++ +VHN
Sbjct: 136 ESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGHMILGHVLKLRLELVSHVHN 195
Query: 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
A IH+F SCGD+ A VFDES VR+LVSWN LING+ + G +AI +++ M+ E V+P
Sbjct: 196 ASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIGEAEKAIYVYKLMESEGVKP 255
Query: 179 DEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238
D+VTMIG+VS+C+ L DLN G+E + Y+ E+GL +T+PL NALMDM+ KCG + A IF
Sbjct: 256 DDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIF 315
Query: 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298
D++ +T+VS TTMI GYA+ G LD++RK+FDD+ EK VV WNA+IGG VQAKR ++ALA
Sbjct: 316 DNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALA 375
Query: 299 LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358
LF EMQ + KPD +T +HCLSACSQLGALD GIWIHR+IEK + +LNV LGT+LVDMYA
Sbjct: 376 LFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYIEKYSLSLNVALGTSLVDMYA 435
Query: 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418
KCGNI++AL VFH + RNSLTYTAIIGGLALHG A AISYF+EMI G+ PDEITF+G
Sbjct: 436 KCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIG 495
Query: 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478
+LSACCHGG++ GR YF+QM S F L+P+LKHYS MVDLLGR+GLLEEA++L+ SMPM
Sbjct: 496 LLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPME 555
Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
AD VWGAL F CR+HGNV +GE+AA KLLELDP DSGIYVLL MY ++NMWE+A + R
Sbjct: 556 ADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRAR 615
Query: 539 KMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587
+MM ERGVEK PGCSSIEVNG++ EFIVRDKS PE E+IYD L L RH
Sbjct: 616 RMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKIYDRLHCLGRH 664
|
|
| TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1265 (450.4 bits), Expect = 6.6e-129, P = 6.6e-129
Identities = 235/579 (40%), Positives = 368/579 (63%)
Query: 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMR 60
M TG S ++ S+L A A+S +L+Y K+ + PNSF+WN IR +
Sbjct: 53 MIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPV 112
Query: 61 EAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
++ + M+ P+ +T+P L K A + LG + G +K D++V N++
Sbjct: 113 LSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSL 172
Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
IH + SCGDL AC VF +++VSWNS+INGFV+ G P +A+ LF+ M+ E V+
Sbjct: 173 IHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASH 232
Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
VTM+G++SACA++ +L GR++ YI E+ + + + LANA++DMY KCG +E A+ +FD+
Sbjct: 233 VTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDA 292
Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
M K V+ TTM+ GYA + AR++ + +P+K +V WNA+I Y Q + EAL +F
Sbjct: 293 MEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVF 352
Query: 301 HEMQAT-GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
HE+Q +K + +T V LSAC+Q+GAL+ G WIH +I+K +N + +AL+ MY+K
Sbjct: 353 HELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSK 412
Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
CG++ K+ +VF+ + +R+ ++A+IGGLA+HG +A+ F +M + P+ +TF +
Sbjct: 413 CGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNV 472
Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA 479
AC H GLVDE F QM S + + P+ KHY+C+VD+LGRSG LE+A + I +MP+
Sbjct: 473 FCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPP 532
Query: 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539
VWGAL AC++H N+++ E A +LLEL+P++ G +VLL+N+Y WE ++RK
Sbjct: 533 STSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRK 592
Query: 540 MMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
M G++K PGCSSIE++G+++EF+ D +HP E++Y
Sbjct: 593 HMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVY 631
|
|
| TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
Identities = 232/586 (39%), Positives = 362/586 (61%)
Query: 7 ISHGFAPS-----RLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
I+ G AP+ +L F ++ Y K+ + P+ WN I+G+ + E
Sbjct: 58 ITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGE 117
Query: 62 AVDLYKQMLRNGGTRPDNFTYPLLFK-VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120
V LY ML+ G T PD+ T+P L + G G ++ HV+K G ++YV NA+
Sbjct: 118 GVRLYLNMLKEGVT-PDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNAL 176
Query: 121 IHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
+ ++ CG + +A VFD C ++ SWN +I+G+ R E+I L +M+ V P
Sbjct: 177 VKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTS 236
Query: 181 VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240
VT++ ++SAC++++D +L + +H Y+SE ++ L NAL++ Y CG+++ A IF S
Sbjct: 237 VTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRS 296
Query: 241 MVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALF 300
M + V+S T+++ GY + G L +AR FD +P + + W +I GY++A E+L +F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356
Query: 301 HEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360
EMQ+ G+ PD T V L+AC+ LG+L+ G WI +I+K +VV+G AL+DMY KC
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKC 416
Query: 361 GNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420
G KA +VFH+M +R+ T+TA++ GLA +G+ +AI F +M + + PD+IT+LG+L
Sbjct: 417 GCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVL 476
Query: 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480
SAC H G+VD+ RK+FA+M S R+ P L HY CMVD+LGR+GL++EA +++R MPM +
Sbjct: 477 SACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPN 536
Query: 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540
+VWGAL A RLH + + E AA K+LEL+P + +Y LL N+Y W++ +VR+
Sbjct: 537 SIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRK 596
Query: 541 MEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586
+ + ++KTPG S IEVNG +EF+ DKSH + E+IY L +L +
Sbjct: 597 IVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMKLEELAQ 642
|
|
| TAIR|locus:2206164 AT1G31430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1098 (391.6 bits), Expect = 3.3e-111, P = 3.3e-111
Identities = 229/554 (41%), Positives = 347/554 (62%)
Query: 38 VQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFL 97
+Q P+ +N ++ + + + L+ + LR G PDNFT P++ K L
Sbjct: 6 LQTPSLLMYNKMLKSLADGKSFTKVLALFGE-LRGQGLYPDNFTLPVVLKSIGRLRKVIE 64
Query: 98 GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157
G ++ G+ +K G + D YV N+++ ++ S G + + VFDE R++VSWN LI+ +V
Sbjct: 65 GEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVG 124
Query: 158 SGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
+G +AI +F+ M E ++ DE T++ +SAC+ L++L +G I+ ++ ++V
Sbjct: 125 NGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTE-FEMSVR 183
Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
+ NAL+DM+ KCG L+ A +FDSM +K V T+M+ GY G +D AR +F+ P K
Sbjct: 184 IGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKD 243
Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
VV W A++ GYVQ R EAL LF MQ GI+PD V L+ C+Q GAL+ G WIH
Sbjct: 244 VVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHG 303
Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
+I + ++ V+GTALVDMYAKCG I AL+VF+E+ ER++ ++T++I GLA++G +
Sbjct: 304 YINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGR 363
Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
A+ + EM VG+ D ITF+ +L+AC HGG V EGRK F M+ + PK +H SC++
Sbjct: 364 ALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLI 423
Query: 457 DLLGRSGLLEEAEQLIRSMPMAAD---VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513
DLL R+GLL+EAE+LI M +D V V+ +L A R +GNV I ER A KL +++
Sbjct: 424 DLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVS 483
Query: 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDK--SH 571
DS + LLA++Y +N WE+ VR+ M++ G+ K PGCSSIE++G+ +EFIV D SH
Sbjct: 484 DSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSH 543
Query: 572 PELEQIYDCLVQLT 585
P++++I L Q T
Sbjct: 544 PKMDEINSMLHQTT 557
|
|
| TAIR|locus:2130354 AT4G14820 "AT4G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
Identities = 215/574 (37%), Positives = 340/574 (59%)
Query: 6 LISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNP-NSFSWNVAIRGFLETGKMREAVD 64
+I+H S L S S NL Y + ++ +P S +N +R + + R +
Sbjct: 39 VINHKLN-SFLFNLSVSSSSINLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATI- 96
Query: 65 LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124
L+ Q +R+ G R D F++ + K + + F G E+ G K+ D +V + ++
Sbjct: 97 LFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMY 156
Query: 125 VSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184
SCG + A NVFDE R++V+WN++I + R G EA +LF +M+ V PDE+ +
Sbjct: 157 ASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILC 216
Query: 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK 244
+VSAC + ++ R I+ ++ E+ + + L AL+ MY G ++ A E F M +
Sbjct: 217 NIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVR 276
Query: 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQ 304
+ T M+ GY+K G LD A+ IFD +K +V W +I YV++ +EAL +F EM
Sbjct: 277 NLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMC 336
Query: 305 ATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364
+GIKPD V+ +SAC+ LG LD W+H I + + AL++MYAKCG +
Sbjct: 337 CSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLD 396
Query: 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424
VF +MP RN ++++++I L++HG+A DA+S F+ M + P+E+TF+G+L C
Sbjct: 397 ATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCS 456
Query: 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVW 484
H GLV+EG+K FA M+ + ++PKL+HY CMVDL GR+ LL EA ++I SMP+A++VV+W
Sbjct: 457 HSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIW 516
Query: 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544
G+L ACR+HG + +G+ AA ++LEL+P G VL++N+Y WE+ +R++MEE+
Sbjct: 517 GSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEK 576
Query: 545 GVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIY 578
V K G S I+ NG +EF++ DK H + +IY
Sbjct: 577 NVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIY 610
|
|
| TAIR|locus:2054131 SLO2 "AT2G13600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 219/561 (39%), Positives = 338/561 (60%)
Query: 28 LDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87
LD + ++ + +WN + GF + + EA+ Y M+ G + +++ +
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEAL-CYFAMMHKEGFVLNEYSFASVLS 160
Query: 88 VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVS 147
C+ L G ++ + K F D+Y+ +A++ ++ CG++ A VFDE RN+VS
Sbjct: 161 ACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVS 220
Query: 148 WNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207
WNSLI F ++G EA+ +F+ M RVEPDEVT+ ++SACA L + +G+E+H +
Sbjct: 221 WNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVV 280
Query: 208 ESG-LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIAR 266
++ L + L+NA +DMY KC +++ A IFDSM + V++ T+MI GYA AR
Sbjct: 281 KNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAAR 340
Query: 267 KIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326
+F + E+ VV WNA+I GY Q ++EAL+LF ++ + P + + L AC+ L
Sbjct: 341 LMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLA 400
Query: 327 ALDDGIWIHRFIEKENFNL------NVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT 380
L G+ H + K F ++ +G +L+DMY KCG + + VF +M ER+ ++
Sbjct: 401 ELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVS 460
Query: 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440
+ A+I G A +G +A+ F EM+ G PD IT +G+LSAC H G V+EGR YF+ M+
Sbjct: 461 WNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMT 520
Query: 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIG 500
F ++P HY+CMVDLLGR+G LEEA+ +I MPM D V+WG+L AC++H N+++G
Sbjct: 521 RDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLG 580
Query: 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGL 560
+ A KLLE++P +SG YVLL+NMY + WE+ VRK M + GV K PGCS I++ G
Sbjct: 581 KYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGH 640
Query: 561 LYEFIVRDKSHPELEQIYDCL 581
+ F+V+DKSHP +QI+ L
Sbjct: 641 DHVFMVKDKSHPRKKQIHSLL 661
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1064 (379.6 bits), Expect = 1.3e-107, P = 1.3e-107
Identities = 221/587 (37%), Positives = 346/587 (58%)
Query: 5 GLISHGFAPSRLIAFCAISES-KNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
GL + +A S+LI FC +S + L Y + +Q PN WN RG + A+
Sbjct: 60 GLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSAL 119
Query: 64 DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
LY M+ + G P+++T+P + K CA G +I GHVLKLG D+D+YVH ++I +
Sbjct: 120 KLYVCMI-SLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISM 178
Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
+V G L A VFD+S R++VS+ +LI G+ G+ A +LF ++ ++ D V+
Sbjct: 179 YVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK----DVVSW 234
Query: 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF----D 239
M+S A+ + E+ + ++ + ++ + G +E ++ D
Sbjct: 235 NAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDD 294
Query: 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299
+ +I Y+K G L+ A +F+ LP K V+ WN +IGGY KEAL L
Sbjct: 295 HGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLL 354
Query: 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV--LGTALVDMY 357
F EM +G P+ VT + L AC+ LGA+D G WIH +I+K + L T+L+DMY
Sbjct: 355 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMY 414
Query: 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417
AKCG+I A QVF+ + ++ ++ A+I G A+HG+A + FS M +G+ PD+ITF+
Sbjct: 415 AKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFV 474
Query: 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM 477
G+LSAC H G++D GR F M+ ++++PKL+HY CM+DLLG SGL +EAE++I M M
Sbjct: 475 GLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEM 534
Query: 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537
D V+W +L AC++HGNV +GE A L++++P++ G YVLL+N+Y + W E K
Sbjct: 535 EPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKT 594
Query: 538 RKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
R ++ ++G++K PGCSSIE++ +++EFI+ DK HP +IY L ++
Sbjct: 595 RALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEM 641
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 190/481 (39%), Positives = 284/481 (59%)
Query: 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSC--GD-LGLACNVFDESCVRNLVSWNSLINGFV 156
+I +LK G D Y + +S D L A VFD + WN +I GF
Sbjct: 32 QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS 91
Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
S P ++ L++ M + T ++ AC+ L +IH I++ G V
Sbjct: 92 CSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVY 151
Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
N+L++ Y G + A +FD + VS ++I GY K G +DIA +F + EK
Sbjct: 152 AVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKN 211
Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
+ W +I GYVQA +KEAL LFHEMQ + ++PD V+ + LSAC+QLGAL+ G WIH
Sbjct: 212 AISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHS 271
Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
++ K ++ VLG L+DMYAKCG + +AL+VF + +++ +TA+I G A HG +
Sbjct: 272 YLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGRE 331
Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
AIS F EM +G+ P+ ITF +L+AC + GLV+EG+ F M + L P ++HY C+V
Sbjct: 332 AISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIV 391
Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
DLLGR+GLL+EA++ I+ MP+ + V+WGAL ACR+H N+ +GE L+ +DP G
Sbjct: 392 DLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGG 451
Query: 517 IYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQ 576
YV AN++ W++A + R++M+E+GV K PGCS+I + G +EF+ D+SHPE+E+
Sbjct: 452 RYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEK 511
Query: 577 I 577
I
Sbjct: 512 I 512
|
|
| TAIR|locus:2045580 AT2G42920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
Identities = 195/485 (40%), Positives = 289/485 (59%)
Query: 100 EIFGHVLKLGFDVDMYVHNAVI-HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158
+I ++K G D + V+ S D+ A VF +N WN++I GF RS
Sbjct: 43 QIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAYLVFTRINHKNPFVWNTIIRGFSRS 102
Query: 159 GFPREAIRLFRDMQLER--VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVP 216
FP AI +F DM V+P +T + A +L GR++H + + GL
Sbjct: 103 SFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEGLEDDSF 162
Query: 217 LANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276
+ N ++ MYV CG L A IF M+ VV+ +MI+G+AK G +D A+ +FD++P++
Sbjct: 163 IRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRN 222
Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHR 336
V WN++I G+V+ R K+AL +F EMQ +KPD T V L+AC+ LGA + G WIH
Sbjct: 223 GVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHE 282
Query: 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALD 396
+I + F LN ++ TAL+DMY KCG I + L VF P++ + ++I GLA +G
Sbjct: 283 YIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEER 342
Query: 397 AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456
A+ FSE+ GL PD ++F+G+L+AC H G V ++F M + + P +KHY+ MV
Sbjct: 343 AMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMV 402
Query: 457 DLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516
++LG +GLLEEAE LI++MP+ D V+W +L ACR GNV + +RAA L +LDP ++
Sbjct: 403 NVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETC 462
Query: 517 IYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQ 576
YVLL+N Y ++EEA + R +M+ER +EK GCSSIEV+ ++EFI +HP+ +
Sbjct: 463 GYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFISCGGTHPKSAE 522
Query: 577 IYDCL 581
IY L
Sbjct: 523 IYSLL 527
|
|
| TAIR|locus:2084963 AT3G04750 "AT3G04750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
Identities = 208/588 (35%), Positives = 326/588 (55%)
Query: 6 LISHGFAPSRLIAFCAISESKNLDYCTKILFN-VQNPNSFSWNVAIRGFLETGKMREAVD 64
LI F SRLI F AI+ +NLD + N NPN F +N I + + K E
Sbjct: 62 LICDTFPMSRLIFFSAITYPENLDLAKLLFLNFTPNPNVFVYNTMISA-VSSSK-NECFG 119
Query: 65 LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIHV 123
LY M+R+ PD T+ L K AS L + +I H++ G + Y+ N+++
Sbjct: 120 LYSSMIRHR-VSPDRQTFLYLMK--ASSFLSEVK-QIHCHIIVSGCLSLGNYLWNSLVKF 175
Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
++ G+ G+A VF ++ S+N +I G+ + GF EA++L+ M + +EPDE T+
Sbjct: 176 YMELGNFGVAEKVFARMPHPDVSSFNVMIVGYAKQGFSLEALKLYFKMVSDGIEPDEYTV 235
Query: 184 IGMVSACAQLEDLNLGREIHWYISESG--LTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
+ ++ C L D+ LG+ +H +I G + + L+NAL+DMY KC + A+ FD+M
Sbjct: 236 LSLLVCCGHLSDIRLGKGVHGWIERRGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAM 295
Query: 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA-LF 300
K + S TM+VG+ + G ++ A+ +FD +P++ +V WN+++ GY + + + LF
Sbjct: 296 KKKDMRSWNTMVVGFVRLGDMEAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELF 355
Query: 301 HEMQATG-IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359
+EM +KPD VT V +S + G L G W+H + + + L +AL+DMY K
Sbjct: 356 YEMTIVEKVKPDRVTMVSLISGAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCK 415
Query: 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419
CG I +A VF E++ +T++I GLA HG A+ F M G+ P+ +T L +
Sbjct: 416 CGIIERAFMVFKTATEKDVALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTLLAV 475
Query: 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI-RSMPMA 478
L+AC H GLV+EG F M F P+ +HY +VDLL R+G +EEA+ ++ + MPM
Sbjct: 476 LTACSHSGLVEEGLHVFNHMKDKFGFDPETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMR 535
Query: 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538
+WG++ ACR ++ E A +LL+L+P+ G YVLL+N+Y W + K R
Sbjct: 536 PSQSMWGSILSACRGGEDIETAELALTELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTR 595
Query: 539 KMMEERGVEKTPGCSSIE-VNGLLYEFIVRDK-SHPELEQIYDCLVQL 584
+ ME RGV+KT G SS+ V GL + F+ +K +HP +I L L
Sbjct: 596 EAMENRGVKKTAGYSSVVGVEGL-HRFVAAEKQNHPRWTEIKRILQHL 642
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SJZ3 | PP169_ARATH | No assigned EC number | 0.6457 | 1.0 | 0.8634 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 588 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-135 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-122 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-86 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-52 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-40 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-32 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 8e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-17 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 413 bits (1064), Expect = e-135
Identities = 199/533 (37%), Positives = 304/533 (57%), Gaps = 34/533 (6%)
Query: 45 SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGH 104
SWN I G+ E G+ E ++L+ M PD T + C LG LG E+ G+
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGY 313
Query: 105 VLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164
V+K GF VD+ V N++I +++S G G A VF ++ VSW ++I+G+ ++G P +A
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA 373
Query: 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDM 224
+ + M+ + V PDE+T+ ++SACA L DL++G ++H GL V +ANAL++M
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433
Query: 225 YVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAII 284
Y KC ++ A E+F ++ PEK V+ W +II
Sbjct: 434 YSKCKCIDKALEVFHNI-------------------------------PEKDVISWTSII 462
Query: 285 GGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
G R EAL F +M T +KP++VT + LSAC+++GAL G IH + +
Sbjct: 463 AGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIG 521
Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEM 404
+ L AL+D+Y +CG + A F+ E++ +++ ++ G HGK A+ F+ M
Sbjct: 522 FDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580
Query: 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
+ G+ PDE+TF+ +L AC G+V +G +YF M + ++P LKHY+C+VDLLGR+G
Sbjct: 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640
Query: 465 LEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524
L EA I MP+ D VWGAL ACR+H +V +GE AA + ELDP G Y+LL N+
Sbjct: 641 LTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNL 700
Query: 525 YRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQI 577
Y D+ W+E +VRK M E G+ PGCS +EV G ++ F+ D+SHP++++I
Sbjct: 701 YADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEI 753
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 376 bits (968), Expect = e-122
Identities = 183/530 (34%), Positives = 281/530 (53%), Gaps = 35/530 (6%)
Query: 57 GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY--EIFGHVLKLGFDVDM 114
G+ REA++L++ + TY L + C L+ + ++ HV GF+ D
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACI--ALKSIRCVKAVYWHVESSGFEPDQ 158
Query: 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE 174
Y+ N V+ + V CG L A +FDE RNL SW ++I G V +G REA LFR+M +
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED 218
Query: 175 RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA 234
+ + T + M+ A A L G+++H + ++G+ ++ AL+DMY KCG +E A
Sbjct: 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278
Query: 235 EEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSK 294
R +FD +PEK V WN+++ GY S+
Sbjct: 279 -------------------------------RCVFDGMPEKTTVAWNSMLAGYALHGYSE 307
Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
EAL L++EM+ +G+ D T + S+L L+ H + + F L++V TALV
Sbjct: 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALV 367
Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
D+Y+K G + A VF MP +N +++ A+I G HG+ A+ F MI G+ P+ +
Sbjct: 368 DLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427
Query: 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474
TFL +LSAC + GL ++G + F MS R+ P+ HY+CM++LLGR GLL+EA +IR
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
Query: 475 MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534
P V +W AL ACR+H N+ +G AA KL + P+ YV+L N+Y S EA
Sbjct: 488 APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547
Query: 535 GKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQL 584
KV + ++ +G+ P C+ IEV + F D+ HP+ +IY L +L
Sbjct: 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDEL 597
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 284 bits (728), Expect = 9e-86
Identities = 166/507 (32%), Positives = 261/507 (51%), Gaps = 43/507 (8%)
Query: 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
+ FSWNV + G+ + G EA+ LY +ML G RPD +T+P + + C + G E+
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREV 209
Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
HV++ GF++D+ V NA+I ++V CGD+ A VFD R+ +SWN++I+G+ +G
Sbjct: 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGEC 269
Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
E + LF M+ V+PD +T+ ++SAC L D LGRE+H Y+ ++G + V + N+L
Sbjct: 270 LEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSL 329
Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
+ MY+ G AE++F M K VS T MI GY K G P+K
Sbjct: 330 IQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL-----------PDK------ 372
Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE 341
AL + M+ + PD +T LSAC+ LG LD G+ +H E++
Sbjct: 373 --------------ALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERK 418
Query: 342 NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF 401
VV+ AL++MY+KC I KAL+VFH +PE++ +++T+II GL L+ + +A+ +F
Sbjct: 419 GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478
Query: 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY--SCMVDLL 459
+M+ L P+ +T + LSAC G + G++ A + R + + ++DL
Sbjct: 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAH---VLRTGIGFDGFLPNALLDLY 534
Query: 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD--PQDSGI 517
R G + A S DVV W L HG S+ +++E P +
Sbjct: 535 VRCGRMNYAWNQFNS--HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592
Query: 518 YVLLANMYRDSNMWEEAGKVRKMMEER 544
LL R S M + + MEE+
Sbjct: 593 ISLLCACSR-SGMVTQGLEYFHSMEEK 618
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 6e-52
Identities = 124/454 (27%), Positives = 213/454 (46%), Gaps = 46/454 (10%)
Query: 47 NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106
N +R G++ +A+ L + M + D Y LF++C G + L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL 113
Query: 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIR 166
+ + + NA++ +FV G+L A VF + R+L SWN L+ G+ ++G+ EA+
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 167 LFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYV 226
L+ M V PD T ++ C + DL GRE+H ++ G L V + NAL+ MYV
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233
Query: 227 KCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286
KCG + S AR +FD +P + + WNA+I G
Sbjct: 234 KCGDVVS-------------------------------ARLVFDRMPRRDCISWNAMISG 262
Query: 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346
Y + E L LF M+ + PD +T +SAC LG G +H ++ K F ++
Sbjct: 263 YFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322
Query: 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406
V + +L+ MY G+ +A +VF M ++++++TA+I G +G A+ ++ M
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382
Query: 407 VGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS------CMVDLLG 460
+ PDEIT +LSAC G +D G K + L+ + S ++++
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVK-------LHELAERKGLISYVVVANALIEMYS 435
Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
+ +++A ++ ++P DV+ W ++ RL+
Sbjct: 436 KCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLN 468
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 5e-40
Identities = 85/290 (29%), Positives = 138/290 (47%), Gaps = 32/290 (11%)
Query: 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101
N SW I G ++ G REA L+++M +G + T+ ++ + A LG G ++
Sbjct: 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQL 246
Query: 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFP 161
VLK G D +V A+I ++ CGD+ A VFD + V+WNS++ G+ G+
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYS 306
Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
EA+ L+ +M+ V D+ T M+ ++L L ++ H + +G L + AL
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366
Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
+D+Y K G++E AR +FD +P K ++ WN
Sbjct: 367 VDLYSKWGRMED-------------------------------ARNVFDRMPRKNLISWN 395
Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG 331
A+I GY R +A+ +F M A G+ P+ VT + LSAC G + G
Sbjct: 396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (330), Expect = 7e-32
Identities = 111/441 (25%), Positives = 185/441 (41%), Gaps = 83/441 (18%)
Query: 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208
NS + G +A++L MQ RV DE + + C + G +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268
S +L V L NA++ M+V+ G+L A +F M
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKM--------------------------- 147
Query: 269 FDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328
PE+ + WN ++GGY +A EAL L+H M G++PD T L C + L
Sbjct: 148 ----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203
Query: 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGL 388
G +H + + F L+V + AL+ MY KCG++ A VF MP R+ +++ A+I G
Sbjct: 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY 263
Query: 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC-----------CHG----------- 426
+G+ L+ + F M + + PD +T ++SAC HG
Sbjct: 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323
Query: 427 -------------GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473
G E K F++M + +S ++ M+ ++GL ++A +
Sbjct: 324 SVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS-----WTAMISGYEKNGLPDKALETYA 378
Query: 474 SMPM---AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI-YVLLAN----MY 525
M + D + ++ AC G++ +G +KL EL + I YV++AN MY
Sbjct: 379 LMEQDNVSPDEITIASVLSACACLGDLDVG----VKLHELAERKGLISYVVVANALIEMY 434
Query: 526 RDSNMWEEAGKVRKMMEERGV 546
++A +V + E+ V
Sbjct: 435 SKCKCIDKALEVFHNIPEKDV 455
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-25
Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 6/239 (2%)
Query: 4 TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAV 63
GLIS+ + LI S+ K +D ++ N+ + SW I G + EA+
Sbjct: 418 KGLISYVVVANALIEM--YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEAL 475
Query: 64 DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123
++QML +P++ T CA +G G EI HVL+ G D ++ NA++ +
Sbjct: 476 IFFRQML--LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533
Query: 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183
+V CG + A N F+ S +++VSWN L+ G+V G A+ LF M V PDEVT
Sbjct: 534 YVRCGRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592
Query: 184 IGMVSACAQLEDLNLGREI-HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
I ++ AC++ + G E H + +T + ++D+ + GKL A + M
Sbjct: 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 8e-18
Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 7/215 (3%)
Query: 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL-SACSQLGALDDGIWIHRFIEKEN 342
I V R +EAL LF ++A +T L AC L ++ ++ +E
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFS 402
F + + ++ M+ KCG + A ++F EMPERN ++ IIGGL G +A + F
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213
Query: 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY-SC-MVDLLG 460
EM G + TF+ +L A G G++ + + + SC ++D+
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH---CCVLKTGVVGDTFVSCALIDMYS 270
Query: 461 RSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG 495
+ G +E+A + MP V W ++ LHG
Sbjct: 271 KCGDIEDARCVFDGMPEKT-TVAWNSMLAGYALHG 304
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 5e-17
Identities = 78/305 (25%), Positives = 120/305 (39%), Gaps = 43/305 (14%)
Query: 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354
+AL L MQ + D V C A+++G + + +L V LG A++
Sbjct: 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 355 DMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414
M+ + G + A VF +MPER+ ++ ++GG A G +A+ + M+ G+ PD
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188
Query: 415 TFLGILSACCHGGLVD--EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472
TF +L C GG+ D GR+ A + F + + ++ + + G + A +
Sbjct: 189 TFPCVLRTC--GGIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVF 245
Query: 473 RSMPMAADVVVWGA----------------LFF-------------------ACRLHGNV 497
MP D + W A LFF AC L G+
Sbjct: 246 DRMPR-RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
Query: 498 SIG-ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG-VEKTPGCSSI 555
+G E + D + L MY W EA KV ME + V T S
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 556 EVNGL 560
E NGL
Sbjct: 365 EKNGL 369
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 1e-16
Identities = 101/443 (22%), Positives = 171/443 (38%), Gaps = 93/443 (20%)
Query: 53 FLETGKMREAVD---LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG--HVLK 107
F + K + AV + +++RN P T+ +L VCAS +I G VL+
Sbjct: 412 FFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCAS------SQDIDGALRVLR 461
Query: 108 L----GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR----NLVSWNSLINGFVRSG 159
L G D ++ +I G + VF E N+ ++ +LI+G R+G
Sbjct: 462 LVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521
Query: 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ----------LEDLNLGREIHWYISES 209
+A + M+ + V+PD V ++SAC Q L ++ E H I
Sbjct: 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEM--KAETH-PIDPD 578
Query: 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN---KTVVSCTTMIVGY-AKFGFLDIA 265
+T+ ALM G+++ A+E++ + K T+ V ++ G D A
Sbjct: 579 HITV-----GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633
Query: 266 RKIFDDLPEKYVVP----WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321
I+DD+ +K V P ++A++ A +A + + + GIK V+ + A
Sbjct: 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693
Query: 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE------MPE 375
CS N KAL+++ + P
Sbjct: 694 CSNAK-----------------------------------NWKKALELYEDIKSIKLRPT 718
Query: 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435
+ T A+I L + A+ SEM +GL P+ IT+ +L A D G
Sbjct: 719 VS--TMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776
Query: 436 FAQMSSIFRLSPKLKHYSCMVDL 458
+Q + + P L C+ L
Sbjct: 777 LSQ-AKEDGIKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 8e-14
Identities = 69/330 (20%), Positives = 144/330 (43%), Gaps = 32/330 (9%)
Query: 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK- 244
++S CA +D++ + + E+GL L L+ K GK+++ E+F MVN
Sbjct: 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG 502
Query: 245 ---TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP----WNAIIGGYVQAKRSKEAL 297
V + +I G A+ G + A + + K V P +NA+I Q+ A
Sbjct: 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562
Query: 298 ALFHEMQA--TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVD 355
+ EM+A I PD +T + AC+ G +D +++ I + N + T V+
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622
Query: 356 MYAKCGNIAKALQVFHEMPER----NSLTYTAIIGGLALHGKALD-AISYFSEMIGVGLM 410
++ G+ AL ++ +M ++ + + ++A++ +A H LD A + G+
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV-DVAGHAGDLDKAFEILQDARKQGIK 681
Query: 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470
+++ ++ AC + + + + + SI +L P + + ++ L E Q
Sbjct: 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALC------EGNQ 734
Query: 471 LIRSMPMAADV---------VVWGALFFAC 491
L +++ + +++ + + L A
Sbjct: 735 LPKALEVLSEMKRLGLCPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-10
Identities = 54/244 (22%), Positives = 86/244 (35%), Gaps = 69/244 (28%)
Query: 319 LSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP---- 374
+S C+ +D + + R +++ + L T L+ AK G + +VFHEM
Sbjct: 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV 503
Query: 375 ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434
E N T+ A+I G A G+ A + M + PD + F ++SAC G VD
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563
Query: 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH 494
A+M + + P+ D + GAL AC
Sbjct: 564 VLAEMKA-------------------------------ETHPIDPDHITVGALMKACANA 592
Query: 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554
G V + A +V +M+ E ++ TP +
Sbjct: 593 GQV----------------------------------DRAKEVYQMIHEYNIKGTPEVYT 618
Query: 555 IEVN 558
I VN
Sbjct: 619 IAVN 622
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 4e-10
Identities = 13/49 (26%), Positives = 31/49 (63%)
Query: 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192
++V++N+LI+G+ + G EA++LF +M+ ++P+ T ++ +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 9e-10
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 41 PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90
P+ ++N I G+ + GK+ EA+ L+ +M + G +P+ +TY +L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-09
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVT 314
VV +N +I GY + + +EAL LF+EM+ GIKP+ T
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 9e-08
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425
+ +TY +I G GK +A+ F+EM G+ P+ T+ ++ C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPER----NSLTYTAIIGGLA 389
+VV L+D Y K G + +AL++F+EM +R N TY+ +I GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
+N +I G +A R +EAL LF EM+ GI+PD
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180
V++N+LI+G ++G EA+ LF++M+ +EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 219 NALMDMYVKCGKLESAEEIFDSMVNK----TVVSCTTMIVGYAK 258
N L+D Y K GK+E A ++F+ M + V + + +I G K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 35/195 (17%)
Query: 36 FNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLR 95
FN + SWN+ + G++ GK AV+L+ +M+ + G PD T+ L C+ G+
Sbjct: 547 FNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES-GVNPDEVTFISLLCACSRSGMV 605
Query: 96 FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGF 155
G E F H ++ + + N+ +CV +L+
Sbjct: 606 TQGLEYF-HSMEEKY--------------------SITPNLKHYACVVDLLG-------- 636
Query: 156 VRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV 215
R+G EA M + PD +++AC + LG +I E +V
Sbjct: 637 -RAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-PNSV 691
Query: 216 PLANALMDMYVKCGK 230
L ++Y GK
Sbjct: 692 GYYILLCNLYADAGK 706
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/31 (41%), Positives = 24/31 (77%)
Query: 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERV 176
V++NSLI+G+ ++G EA+ LF++M+ + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 141 CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
++V++N+LI+G R+G EA+ L +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGI 308
V +N++I GY +A + +EAL LF EM+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.7 bits (101), Expect = 2e-04
Identities = 42/211 (19%), Positives = 72/211 (34%), Gaps = 15/211 (7%)
Query: 336 RFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE-----MPERNSLTYTAIIGGLAL 390
+E + L L K G + +AL++ + + + + L
Sbjct: 48 EALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEA 107
Query: 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450
GK +A+ + + + PD L L A G +E + + + L P+L
Sbjct: 108 LGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK---ALELDPELN 164
Query: 451 HYSCMVDLLGRS----GLLEEAEQLIR---SMPMAADVVVWGALFFACRLHGNVSIGERA 503
+ + LG G EEA +L+ + D L G
Sbjct: 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY 224
Query: 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534
K LELDP ++ LA + + +EEA
Sbjct: 225 YEKALELDPDNAEALYNLALLLLELGRYEEA 255
|
Length = 291 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 2e-04
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178
L ++N+L+ ++G P A+ + +M+ ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 6e-04
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKP 310
+NA++ +A ALA+ EM+A+G+KP
Sbjct: 4 YNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 7e-04
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 44 FSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
++N I G+ + GK+ EA++L+K+M G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 44 FSWNVAIRGFLETGKMREAVDLYKQMLRNG 73
++N I G + G++ EA++L+K+M G
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG 30
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 219 NALMDMYVKCGKLESAEEIFDSMVNK 244
N+L+ Y K GKLE A E+F M K
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 588 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.76 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.74 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.69 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.68 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.64 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.57 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.57 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.53 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.52 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.49 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.49 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.49 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.45 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.43 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.42 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.42 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.41 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.37 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.35 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.33 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.28 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.27 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.25 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.25 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.24 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.22 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.22 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.21 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.2 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.18 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.17 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.16 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.15 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.15 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.09 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.09 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.08 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.07 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.04 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.98 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.95 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.95 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.93 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.88 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.85 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.83 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.83 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.82 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.8 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.78 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.76 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.75 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.72 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.69 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.68 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.65 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.64 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.61 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.6 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.59 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.58 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.53 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.51 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.5 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.5 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.46 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.46 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.44 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.41 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.39 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.38 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.34 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.29 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.29 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.28 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.26 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.22 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.2 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.19 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.17 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.15 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.15 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.11 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.08 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.07 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.01 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.99 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.97 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.95 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.95 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.95 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.95 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.94 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.91 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.89 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.89 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.86 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.85 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.83 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.79 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.77 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.77 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.75 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.75 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.72 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.71 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.69 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.66 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.65 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.65 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.63 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.61 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.6 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.55 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.52 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.52 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.51 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.49 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.48 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.46 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.46 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.43 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.43 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.43 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.42 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.42 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.41 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.41 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.41 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.39 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.39 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.39 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.38 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.35 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.33 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.29 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.28 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.23 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.23 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.21 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.18 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.17 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.14 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.14 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.11 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.08 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.01 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.99 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.96 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.95 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.85 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.74 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.59 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.56 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.54 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.54 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.52 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.52 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.51 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.48 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.4 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.32 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.13 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.12 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.1 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.1 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.08 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.95 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.94 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.88 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.85 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.85 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.8 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.75 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.68 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.61 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.61 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.6 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.58 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.54 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.44 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.41 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.4 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.39 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.36 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.35 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.35 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.17 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.15 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.14 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.13 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.98 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.95 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.91 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.91 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.82 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.81 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.77 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.69 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.66 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.63 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.4 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.36 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.3 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.15 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.01 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.94 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.87 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.7 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.52 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.48 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.28 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 93.24 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.23 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.19 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.18 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.69 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 92.47 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.45 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.43 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.3 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.23 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.18 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.04 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 92.0 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.92 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 91.68 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.61 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.39 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.24 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.2 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.19 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.12 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.06 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.02 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.9 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.86 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.86 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.77 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.76 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.46 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.33 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 90.23 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.19 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.18 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 90.11 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 90.02 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.02 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 90.01 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.97 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 89.97 | |
| PRK09687 | 280 | putative lyase; Provisional | 89.76 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.27 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.25 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.02 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.92 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.86 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.69 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.6 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.49 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 88.03 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.93 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 87.8 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.35 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 87.33 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 87.09 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 86.69 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 86.62 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.39 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.17 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 86.14 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 85.43 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 85.1 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 84.84 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 84.7 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.5 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.45 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 84.14 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 83.81 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.28 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.59 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 82.54 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.43 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.18 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 81.95 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 81.93 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.67 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.85 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 80.83 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 80.65 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.21 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-85 Score=699.09 Aligned_cols=581 Identities=37% Similarity=0.700 Sum_probs=552.7
Q ss_pred ccccCcCCchhhHHHHhhcccCCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccH
Q 007818 3 ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82 (588)
Q Consensus 3 ~~g~~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 82 (588)
+.|..|+..++|.|+.+|+ +.|+++.|+++|++|++||..+||.+|.+|++.|++++|+++|++|.. .|+.||..||
T Consensus 114 ~~~~~~~~~~~n~li~~~~--~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~ 190 (857)
T PLN03077 114 SSHPSLGVRLGNAMLSMFV--RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTF 190 (857)
T ss_pred HcCCCCCchHHHHHHHHHH--hCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHH
Confidence 3577788899999999999 999999999999999999999999999999999999999999999998 7999999999
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChh
Q 007818 83 PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162 (588)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 162 (588)
+.++++|+..+++..+.+++..+.+.|+.||..+++.|+.+|++.|+++.|.++|++|..+|..+||++|.+|++.|+++
T Consensus 191 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~ 270 (857)
T PLN03077 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECL 270 (857)
T ss_pred HHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcC
Q 007818 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242 (588)
Q Consensus 163 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 242 (588)
+|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.
T Consensus 271 eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 350 (857)
T PLN03077 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME 350 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcchHHHHHHHHHh----------------------------------------------------------------
Q 007818 243 NKTVVSCTTMIVGYAK---------------------------------------------------------------- 258 (588)
Q Consensus 243 ~~~~~~~~~ll~~~~~---------------------------------------------------------------- 258 (588)
.+|..+|+.++.+|++
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~L 430 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 8887777777777444
Q ss_pred ------cCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHH
Q 007818 259 ------FGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332 (588)
Q Consensus 259 ------~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 332 (588)
.|++++|.++|++|.+++..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+++.+.
T Consensus 431 i~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 45555555555556666677788888888888888888888888875 58999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007818 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412 (588)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 412 (588)
+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+|..+|++++.+|+++|+.++|+++|++|.+.|+.||
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 007818 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492 (588)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 492 (588)
..||+.++.+|.+.|.+++|.++|+.|.+.+++.|+..+|+.++++|.+.|++++|.+++++|+.+|+..+|..++.+|.
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~ 668 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACR 668 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999996669999999999999999999999999999999999999999999999999
Q ss_pred hhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCc
Q 007818 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHP 572 (588)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (588)
.+|+.+.++.+.+++++++|+++..|..|+++|...|+|++|.++.+.|.+.|+.++|+++|+++++.++.|..||..||
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~ 748 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHP 748 (857)
T ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhC
Q 007818 573 ELEQIYDCLVQLTRHF 588 (588)
Q Consensus 573 ~~~~~~~~~~~~~~~~ 588 (588)
...+||++|+.+.++|
T Consensus 749 ~~~~i~~~l~~l~~~~ 764 (857)
T PLN03077 749 QIKEINTVLEGFYEKM 764 (857)
T ss_pred chHHHHHHHHHHHHHH
Confidence 9999999999988764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-76 Score=610.64 Aligned_cols=518 Identities=36% Similarity=0.607 Sum_probs=498.2
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHH
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (588)
.++..+|+.+|.++.+.|++++|+++|++|....+..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34566899999999999999999999999987455889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHH
Q 007818 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199 (588)
Q Consensus 120 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 199 (588)
++.+|++.|+++.|.++|++|..||..+||+++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCccc
Q 007818 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP 279 (588)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 279 (588)
.+++..+.+.|+.||..+++.|+.+|+++|++++|.++|+.|.++|. .+
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~-------------------------------vt 292 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT-------------------------------VA 292 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCCh-------------------------------hH
Confidence 99999999999999999999999999999999999888888765554 45
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (588)
||.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.|+..++++|+.+|++
T Consensus 293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k 372 (697)
T PLN03081 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372 (697)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH
Confidence 66666777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHh
Q 007818 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQM 439 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 439 (588)
.|++++|.++|++|.++|..+||+|+.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|
T Consensus 373 ~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred CCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
.+.+++.|+..+|+.++++|.+.|++++|.+++++++.+|+..+|+.++.+|..+|+++.|..+++++++..|++...|.
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~ 532 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYV 532 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchH
Confidence 98779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHHHHhhC
Q 007818 520 LLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRHF 588 (588)
Q Consensus 520 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (588)
.|+.+|.+.|++++|.++++.|.+.|+.+.++++|+++.+.++.|+.||..||...++++.|..+..+|
T Consensus 533 ~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 601 (697)
T PLN03081 533 VLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEI 601 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999988764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-68 Score=567.80 Aligned_cols=541 Identities=24% Similarity=0.345 Sum_probs=507.2
Q ss_pred cccccCcCCchhhHHHHhhcccCCCChhhHHhhcccC----CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC
Q 007818 2 TITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNV----QNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRP 77 (588)
Q Consensus 2 ~~~g~~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 77 (588)
.+.|++|+..+|+.++..|. +.+.++.+..++..+ ..++...+|+++..|++.|+.+.|.++|++|.+ |
T Consensus 78 ~~~g~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~-----~ 150 (857)
T PLN03077 78 QELRVPVDEDAYVALFRLCE--WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE-----R 150 (857)
T ss_pred HhcCCCCChhHHHHHHHHHh--hCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC-----C
Confidence 44688899999999999888 788888888888754 367888899999999999999999999999964 8
Q ss_pred CcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhcc----CCCCCcccHHHHHH
Q 007818 78 DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE----SCVRNLVSWNSLIN 153 (588)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~~l~~ 153 (588)
|..+|+.++.+|++.|++++|..+|++|...|+.||..+|+.++.+|+..+++..+.+++.. ...+|..+||.|+.
T Consensus 151 d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~ 230 (857)
T PLN03077 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALIT 230 (857)
T ss_pred CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988876 45689999999999
Q ss_pred HHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhH
Q 007818 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233 (588)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 233 (588)
+|++.|+++.|.++|++|. .||..+|+.+|.+|++.|+.++|.++|.+|.+.|+.||..+|+.++.+|.+.|+.+.
T Consensus 231 ~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 231 MYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 9999999999999999996 578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC----CCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007818 234 AEEIFDSMVN----KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIK 309 (588)
Q Consensus 234 A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 309 (588)
|.+++..+.+ +|..+|+.++.+|++.|++++|.++|++|..++..+|+.++.+|++.|++++|+++|++|.+.|+.
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 9999999854 688999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHH
Q 007818 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389 (588)
Q Consensus 310 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 389 (588)
||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++++++.+|++.|++++|.++|++|.++|..+|+.++.+|+
T Consensus 387 Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~ 466 (857)
T PLN03077 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR 466 (857)
T ss_pred CCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHH
Q 007818 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469 (588)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 469 (588)
+.|+.++|+.+|++|.. ++.||..||..++.+|++.|+++.+.+++..+.+. |+.++..+++.|+++|.++|+.++|.
T Consensus 467 ~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 467 LNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHH
Confidence 99999999999999986 58999999999999999999999999999999988 99999999999999999999999999
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC-CCCCchHHHHHHHHHccCChHHHHHHHHHHH-hcCCc
Q 007818 470 QLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD-PQDSGIYVLLANMYRDSNMWEEAGKVRKMME-ERGVE 547 (588)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 547 (588)
++|+++ .||..+|+.++.+|.++|+.++|.++|+++.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.
T Consensus 545 ~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 545 NQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred HHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 999998 7899999999999999999999999999998754 2278889999999999999999999999998 67888
Q ss_pred cCCceeEEEE
Q 007818 548 KTPGCSSIEV 557 (588)
Q Consensus 548 ~~~~~~~~~~ 557 (588)
|+...+...+
T Consensus 623 P~~~~y~~lv 632 (857)
T PLN03077 623 PNLKHYACVV 632 (857)
T ss_pred CchHHHHHHH
Confidence 8776655433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-65 Score=528.85 Aligned_cols=521 Identities=19% Similarity=0.224 Sum_probs=361.7
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCC-CCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHH
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGG-TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (588)
.++...|..++..+++.|++++|+++|++|.. .| +.++..+++.++.+|.+.|.++.|..+++.|.. |+..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~-~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEK-RGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 33444555555555555555555555555555 33 234444455555555555555555555555532 5555555
Q ss_pred HHHHHHHhCCChhHHHHHhccC----CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccC
Q 007818 119 AVIHVFVSCGDLGLACNVFDES----CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194 (588)
Q Consensus 119 ~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 194 (588)
.++.+|++.|+++.|.++|++| ..||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..||+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 5555555555555555555543 234555555555555555555555555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcC------CCCcchHHHHHHHHHhcCCHHHHHHH
Q 007818 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV------NKTVVSCTTMIVGYAKFGFLDIARKI 268 (588)
Q Consensus 195 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~a~~~ 268 (588)
++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555555555555555555555555555555555555552 23555555555555555555555555
Q ss_pred hhhCCC----CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCC
Q 007818 269 FDDLPE----KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344 (588)
Q Consensus 269 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (588)
|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 555544 3445688888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CcchHHHHHHHHhHhcCChhHHHHHhccCC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMP----ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 345 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.|+.+|++.|++++|.++|++|...|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 888888888888888888888888888884 5788888888888888888888888888888888888888888888
Q ss_pred HHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH----hc-------------------CChHHHHHHHHhCC-
Q 007818 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG----RS-------------------GLLEEAEQLIRSMP- 476 (588)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~~- 476 (588)
.+|++.|++++|.++++.|.+. |+.|+..+|+.++..+. ++ +..++|..+|++|.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 8888888888888888888887 88888888888876532 11 23467999999983
Q ss_pred --CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhc-cCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCcee
Q 007818 477 --MAADVVVWGALFFACRLHGNVSIGERAAMKLLE-LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCS 553 (588)
Q Consensus 477 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 553 (588)
..||..+|..++.++...+....+..+++.+.. -.+.+..+|..|+..+.+. .++|..++++|.+.|+.|+....
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~~~ 918 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVSFK 918 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcccc
Confidence 679999999999777788888888888877642 3355778999999987332 36899999999999999987632
Q ss_pred EEEECCEEEEEecCC
Q 007818 554 SIEVNGLLYEFIVRD 568 (588)
Q Consensus 554 ~~~~~~~~~~~~~~~ 568 (588)
.....-.++++.+|.
T Consensus 919 ~~~~~~d~~~~~~~a 933 (1060)
T PLN03218 919 KSPIVIDAEELPVFA 933 (1060)
T ss_pred cCceEEEcccCcchh
Confidence 212222334444444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=504.19 Aligned_cols=495 Identities=18% Similarity=0.212 Sum_probs=460.3
Q ss_pred CcCCchhhHHHHhhcccCCCChhhHHhhcccCC-----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCccc
Q 007818 7 ISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ-----NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT 81 (588)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 81 (588)
.++...|..++..+. +.|++++|+++|++|+ +++...++.++.+|.+.|..++|..+|+.|.. ||..+
T Consensus 367 ~~~~~~~~~~y~~l~--r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~T 439 (1060)
T PLN03218 367 KRKSPEYIDAYNRLL--RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLST 439 (1060)
T ss_pred CCCchHHHHHHHHHH--HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHH
Confidence 466778999999998 8999999999999987 34566778889999999999999999999854 99999
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCC----CCCcccHHHHHHHHHh
Q 007818 82 YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC----VRNLVSWNSLINGFVR 157 (588)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~ 157 (588)
|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|. .||..+|+.+|.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875 6899999999999999
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH--hCCCCChhhHHHHHHHHHhcCChhHHH
Q 007818 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE--SGLTLTVPLANALMDMYVKCGKLESAE 235 (588)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~ 235 (588)
.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.. .|+.||..+|+.++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 578999999999999999999999999
Q ss_pred HHHHhcCC----CCcchHHHHHHHHHhcCCHHHHHHHhhhCCC----CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 007818 236 EIFDSMVN----KTVVSCTTMIVGYAKFGFLDIARKIFDDLPE----KYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307 (588)
Q Consensus 236 ~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 307 (588)
++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.. ++..+|+.++.+|++.|+.++|.+++++|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999965 4668999999999999999999999999976 466679999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC----CCCcchHHH
Q 007818 308 IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP----ERNSLTYTA 383 (588)
Q Consensus 308 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ 383 (588)
+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 489999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----C-------------------CchHHHHHHHHHhh
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH----G-------------------GLVDEGRKYFAQMS 440 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~ 440 (588)
++.+|++.|+.++|.+++++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999876532 1 12367999999999
Q ss_pred hhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP---MAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
+. |+.||..+|+.++.++...+....+..+++.+. ..|+..+|+.++.++.+. .++|..+++++.+.+
T Consensus 840 ~~-Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 840 SA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HC-CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 98 999999999999999989999999999999885 446788999999988432 468999999998765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=481.66 Aligned_cols=409 Identities=25% Similarity=0.444 Sum_probs=302.8
Q ss_pred ccccCcCCchhhHHHHhhcccCCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccH
Q 007818 3 ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82 (588)
Q Consensus 3 ~~g~~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 82 (588)
+.|+.||..+||.|+.+|+ +.|+++.|+++|++|+.||..+||+++.+|++.|++++|+++|++|.+ .|+.|+..+|
T Consensus 151 ~~g~~~~~~~~n~Li~~y~--k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~p~~~t~ 227 (697)
T PLN03081 151 SSGFEPDQYMMNRVLLMHV--KCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTF 227 (697)
T ss_pred HhCCCcchHHHHHHHHHHh--cCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCChhhH
Confidence 3456666666666666666 566666666666666666666666666666666666666666666655 5566666666
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChh
Q 007818 83 PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPR 162 (588)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 162 (588)
+.++.+|+..|..+.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|+++.++|..+||+++.+|++.|+++
T Consensus 228 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~ 307 (697)
T PLN03081 228 VVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSE 307 (697)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcC
Q 007818 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242 (588)
Q Consensus 163 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 242 (588)
+|+++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+++.|+++|+++|++++|.++|++|
T Consensus 308 eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m- 386 (697)
T PLN03081 308 EALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM- 386 (697)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC-
Confidence 6666666666666666666666666666666666666666666666666666666666666665555555555555554
Q ss_pred CCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007818 243 NKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322 (588)
Q Consensus 243 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 322 (588)
.++|..+||.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|
T Consensus 387 ------------------------------~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 387 ------------------------------PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred ------------------------------CCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 45566677778888889999999999999999999999999999999999
Q ss_pred cccCChhHHHHHHHHHHH-hCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC-CCCcchHHHHHHHHHhcCChHHHHHH
Q 007818 323 SQLGALDDGIWIHRFIEK-ENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-ERNSLTYTAIIGGLALHGKALDAISY 400 (588)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 400 (588)
.+.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. +|+..+|++|+.+|..+|+.+.|..+
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999999976 6999999999999999999999999999999997 68999999999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC
Q 007818 401 FSEMIGVGLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448 (588)
Q Consensus 401 ~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 448 (588)
++++.+. .|+ ..+|..++..|++.|++++|.++++.|.+. |+...
T Consensus 517 ~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k~ 562 (697)
T PLN03081 517 AEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSMH 562 (697)
T ss_pred HHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCccC
Confidence 9999764 554 569999999999999999999999999988 77543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=309.65 Aligned_cols=525 Identities=13% Similarity=0.040 Sum_probs=374.5
Q ss_pred CcCCchhhHHHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC-CcccH
Q 007818 7 ISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRP-DNFTY 82 (588)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 82 (588)
|.+...+..+...+. +.|++++|...++.+. +.+...+..+...+.+.|++++|.+.|+++.+ ..| +...+
T Consensus 326 p~~~~~~~~la~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~ 400 (899)
T TIGR02917 326 PNSHQARRLLASIQL--RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATE---LDPENAAAR 400 (899)
T ss_pred CCChHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCHHHH
Confidence 455666667777777 8888888888887654 45666788888888888888888888888876 334 34456
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCC
Q 007818 83 PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC---VRNLVSWNSLINGFVRSG 159 (588)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 159 (588)
..+...+...|++++|...++.+.+... ........++..+.+.|++++|..+++++. +++...|..+...+...|
T Consensus 401 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 479 (899)
T TIGR02917 401 TQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG 479 (899)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC
Confidence 6667777788888888888888877552 233455566677778888888888777642 345667777778888888
Q ss_pred ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 007818 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239 (588)
Q Consensus 160 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 239 (588)
++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++.+.+... .+..++..+...+.+.|++++|...++
T Consensus 480 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 557 (899)
T TIGR02917 480 DLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLE 557 (899)
T ss_pred CHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888777643 33444566677777778888888888887777643 356677777777777888888888877
Q ss_pred hcCCC---CcchHHHHHHHHHhcCCHHHHHHHhhhCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007818 240 SMVNK---TVVSCTTMIVGYAKFGFLDIARKIFDDLPE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313 (588)
Q Consensus 240 ~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 313 (588)
++.+. +...+..+...+.+.|++++|...++.+.. .+...|..+..++...|++++|...|+.+.+.. +.+..
T Consensus 558 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 636 (899)
T TIGR02917 558 KAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSAL 636 (899)
T ss_pred HHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 76432 344566677777778888888877777654 233447777777777888888888887777653 33455
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHh
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLAL 390 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 390 (588)
.+..+..++...|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+ .+...+..+...+..
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLR 715 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHH
Confidence 66677777777788888888777776653 23456667777777777788877777777653 345566667777777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHH
Q 007818 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQ 470 (588)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 470 (588)
.|++++|...|+.+... .|+..++..+..++.+.|++++|.+.++.+.+ ..+.+...+..++..|...|++++|.+
T Consensus 716 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 716 QKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred CCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 77777777777777765 34446666677777777777777777777776 345566777777777777777777777
Q ss_pred HHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 471 LIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 471 ~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
.|+++. .+++...+..+...+...|+ ++|+..++++++..|+++..+..++.++.+.|++++|.++++++.+.+.
T Consensus 792 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 792 HYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777763 22356667777777777777 6677777777777777777777777777777777777777777776654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=303.86 Aligned_cols=520 Identities=13% Similarity=0.067 Sum_probs=285.2
Q ss_pred CCchhhHHHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC-cccHHH
Q 007818 9 HGFAPSRLIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD-NFTYPL 84 (588)
Q Consensus 9 ~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ 84 (588)
+..+++.+...|. +.|++++|...|+++. +.+...+..+...+...|++++|++.|+.+.+ ..|+ ......
T Consensus 362 ~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~ 436 (899)
T TIGR02917 362 DPAALSLLGEAYL--ALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ---LDPELGRADLL 436 (899)
T ss_pred CHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHh---hCCcchhhHHH
Confidence 3444555555555 5566666666665432 33444555555556666666666666665554 1222 223334
Q ss_pred HHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCCh
Q 007818 85 LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFP 161 (588)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~ 161 (588)
++..+.+.|++++|..+++.+... .+++..++..+..++...|++++|.+.|++. .+.+...+..+...+...|++
T Consensus 437 l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~ 515 (899)
T TIGR02917 437 LILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCH
Confidence 445555566666666666665553 2344555555566666666666666666542 223344455555555666666
Q ss_pred hHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 162 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
++|.+.|+++...+ +.+..++..+...+...|+.++|...++.+.+.+. .+...+..++..+...|++++|..+++.+
T Consensus 516 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 593 (899)
T TIGR02917 516 DDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEA 593 (899)
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666655442 23444555555555556666666666665555432 23444555556666666666666666555
Q ss_pred CC---CCcchHHHHHHHHHhcCCHHHHHHHhhhCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 007818 242 VN---KTVVSCTTMIVGYAKFGFLDIARKIFDDLPE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315 (588)
Q Consensus 242 ~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 315 (588)
.+ .++..|..+..++...|++++|...|+.+.. .++..+..+...+...|++++|...++.+.+.. +.+..++
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 672 (899)
T TIGR02917 594 ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQ 672 (899)
T ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 32 2344555556666666666666666655432 223335555555666666666666666655532 2334555
Q ss_pred HHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCC
Q 007818 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLTYTAIIGGLALHGK 393 (588)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 393 (588)
..+...+...|+++.|..+++.+.+.. +.+...+..+...+...|++++|.+.|+.+.. |+..++..++.++...|+
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGN 751 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCC
Confidence 555555666666666666666555543 22444455555556666666666666655542 333445555555666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 007818 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473 (588)
Q Consensus 394 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (588)
+++|.+.++.+.+.. +.+...+..+...|...|++++|.++|+++.+ ..++++..+..++..+...|+ .+|+++++
T Consensus 752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 666666666655542 33444555555556666666666666666655 223445555556666666666 55666655
Q ss_pred hC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 474 SM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 474 ~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
++ ...| +...+..+...+...|++++|...++++++.+|.++.++..++.++.+.|++++|.+++++++
T Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 828 KALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 54 2222 333444555555556666666666666666666666666666666666666666666665553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-25 Score=240.04 Aligned_cols=522 Identities=12% Similarity=0.012 Sum_probs=354.5
Q ss_pred CcCCchhhHHHHhhcccCCCChhhHHhhcccCC--CC-ChhhH----------------HHHHHHHHhCCChHHHHHHHH
Q 007818 7 ISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ--NP-NSFSW----------------NVAIRGFLETGKMREAVDLYK 67 (588)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~----------------~~l~~~~~~~~~~~~a~~~~~ 67 (588)
|.|+.++..+...+. +.|+.++|.+.+++.. .| +...+ ..+.+.+...|++++|++.|+
T Consensus 59 p~~p~~~~~~~~~~l--~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~ 136 (1157)
T PRK11447 59 PNNPDVIAARFRLLL--RQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYD 136 (1157)
T ss_pred CCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHH
Confidence 446666777777777 8888888888887764 22 32222 223446777888888888888
Q ss_pred HHHhcCCCCCCccc-HHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCc-
Q 007818 68 QMLRNGGTRPDNFT-YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNL- 145 (588)
Q Consensus 68 ~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~- 145 (588)
.+.+ . .+|+... ...........|+.++|...++++.+.. |.+...+..+...+...|+.++|+..++++.....
T Consensus 137 ~~l~-~-~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~ 213 (1157)
T PRK11447 137 KLFN-G-APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG 213 (1157)
T ss_pred HHcc-C-CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc
Confidence 8876 2 2233221 1111112224577888888888888764 34566677777778888888888877765321000
Q ss_pred ----------------------ccHH----------------------------------HHHHHHHhCCChhHHHHHHH
Q 007818 146 ----------------------VSWN----------------------------------SLINGFVRSGFPREAIRLFR 169 (588)
Q Consensus 146 ----------------------~~~~----------------------------------~l~~~~~~~~~~~~a~~~~~ 169 (588)
..+. .....+...|++++|+..|+
T Consensus 214 ~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 214 RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0000 11233456678888888888
Q ss_pred HhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCh-hhH------------HHHHHHHHhcCChhHHHH
Q 007818 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV-PLA------------NALMDMYVKCGKLESAEE 236 (588)
Q Consensus 170 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~------------~~l~~~~~~~g~~~~A~~ 236 (588)
+..+.. +.+...+..+...+.+.|+.++|...++...+....... ..+ ......+.+.|++++|..
T Consensus 294 ~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 294 QAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 777652 335566777777777888888888888877765432211 111 122345667777777777
Q ss_pred HHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcc---cHH-----------------------------
Q 007818 237 IFDSMVNK---TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV---PWN----------------------------- 281 (588)
Q Consensus 237 ~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~----------------------------- 281 (588)
.|+++.+. +...+..+...+...|++++|++.|+++.+.++. .+.
T Consensus 373 ~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 373 LYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHH
Confidence 77777543 3345556667777777777777777776542222 121
Q ss_pred -------------HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcch
Q 007818 282 -------------AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348 (588)
Q Consensus 282 -------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 348 (588)
.+...+...|++++|++.|++..+.. +-+...+..+...+...|++++|...++.+.+... .+..
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~ 530 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPE 530 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHH
Confidence 22334456778888888888877753 22445566777778888888888888888776542 2334
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCCCC----c---------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPERN----S---------LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 415 (588)
.+..+...+...++.++|...++.+.... . ..+..+...+...|+.++|..+++. .+++...
T Consensus 531 ~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~ 605 (1157)
T PRK11447 531 QVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRI 605 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchH
Confidence 44444555667788888888888775321 0 1123445677888999999988872 2455667
Q ss_pred HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHh
Q 007818 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRL 493 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~ 493 (588)
+..+...+.+.|++++|+..|+++.+. .+.+...+..++..|...|++++|++.++.+. ..| +...+..+..++..
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~ 683 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAA 683 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHh
Confidence 778888999999999999999999973 45568889999999999999999999999874 344 45567777888889
Q ss_pred hCCHHHHHHHHHHHhccCCCCCc------hHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 494 HGNVSIGERAAMKLLELDPQDSG------IYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.|++++|.+.++++++..|+++. .+..++.++...|++++|++.+++...
T Consensus 684 ~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 684 LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999998876543 566779999999999999999999964
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-25 Score=242.45 Aligned_cols=517 Identities=10% Similarity=0.000 Sum_probs=297.6
Q ss_pred HHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccH----------
Q 007818 16 LIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY---------- 82 (588)
Q Consensus 16 ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 82 (588)
.++.+. ..++.+.|++.++++. +.|+..+..++..+.+.|+.++|.+.++++.+ ..|+...+
T Consensus 34 q~~~~~--~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~---~~P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 34 QVRLGE--ATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQ---LAPDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHH--hhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh---hCCCChHHHHHHHHHHhc
Confidence 344666 7899999999998753 66888999999999999999999999999988 45655433
Q ss_pred -------HHHHHHHHccCChhhHHHHHHHHHHhcCCCChhH-HHHHHHHHHhCCChhHHHHHhccCC---CCCcccHHHH
Q 007818 83 -------PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV-HNAVIHVFVSCGDLGLACNVFDESC---VRNLVSWNSL 151 (588)
Q Consensus 83 -------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 151 (588)
......+.+.|++++|...++.+.+.+ +|+... ...........|+.++|++.|+++. +.+...+..+
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~L 187 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTL 187 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 223346778999999999999999854 344322 1112222234699999999999854 3466678888
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCC----------------CCCcc---hHH----------------------------
Q 007818 152 INGFVRSGFPREAIRLFRDMQLERV----------------EPDEV---TMI---------------------------- 184 (588)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~m~~~~~----------------~p~~~---~~~---------------------------- 184 (588)
...+...|++++|++.++++..... .++.. .+.
T Consensus 188 A~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 188 ALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 9999999999999999998854310 00000 000
Q ss_pred ------HHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcc-----hHH---
Q 007818 185 ------GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVV-----SCT--- 250 (588)
Q Consensus 185 ------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~--- 250 (588)
.....+...|++++|...++..++... .+...+..+..++.+.|++++|+..|++..+.++. .|.
T Consensus 268 p~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 011223445566666666666655432 24555566666666666666666666655432111 111
Q ss_pred ---------HHHHHHHhcCCHHHHHHHhhhCCCCC---cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007818 251 ---------TMIVGYAKFGFLDIARKIFDDLPEKY---VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHC 318 (588)
Q Consensus 251 ---------~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 318 (588)
.....+.+.|++++|+..|+++...+ ...+..+...+...|++++|++.|++..+.. +.+...+..+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 11223445666666666666554322 2234455566666666666666666665532 1223333344
Q ss_pred HHHHcccCChhHHHHHHHHHHHhCCC--------CcchHHHHHHHHhHhcCChhHHHHHhccCCC--C-CcchHHHHHHH
Q 007818 319 LSACSQLGALDDGIWIHRFIEKENFN--------LNVVLGTALVDMYAKCGNIAKALQVFHEMPE--R-NSLTYTAIIGG 387 (588)
Q Consensus 319 ~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 387 (588)
...+. .++.++|..+++.+...... .....+..+...+...|++++|.+.|++..+ | ++..+..+...
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44432 34456665555443221100 0012233455566677777777777777653 2 34456667777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcC-----------------------
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR----------------------- 444 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------- 444 (588)
|.+.|++++|...++++.+.. +.+...+..+...+...++.++|...++.+... .
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHH
Confidence 777888888888888777642 223334444444556677778887777765321 1
Q ss_pred ----------------CCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHH
Q 007818 445 ----------------LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMK 506 (588)
Q Consensus 445 ----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 506 (588)
.+++...+..+...+.+.|++++|++.|+++. ..| +...+..++..+...|++++|+..+++
T Consensus 583 l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11222233334444444444444444444431 222 233444444444444555555555555
Q ss_pred HhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 507 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
+++..|+++..+..++.++...|++++|.++++++..
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 5444444444444455555555555555555555443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-23 Score=217.71 Aligned_cols=512 Identities=10% Similarity=0.000 Sum_probs=359.4
Q ss_pred hhhHHHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 007818 12 APSRLIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88 (588)
Q Consensus 12 ~~~~ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (588)
++..++.++.....|++++|...|+... |.+..++..+.+.|...|+.++|+..+++..+ ..|+...|..++..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~---ldP~n~~~~~~La~ 120 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK---RHPGDARLERSLAA 120 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHHHH
Confidence 4445555444335699999999998754 66678899999999999999999999999988 56766655555533
Q ss_pred HHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHH--------HHhCCChhHHHHHhccCCCCC--cccHHH-HHHHHHh
Q 007818 89 CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV--------FVSCGDLGLACNVFDESCVRN--LVSWNS-LINGFVR 157 (588)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~~--~~~~~~-l~~~~~~ 157 (588)
+ ++.++|..+++++.+.. |-+..++..+... |.+.++...+++ .+...|+ ...... +...|.+
T Consensus 121 i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 121 I---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred h---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHH
Confidence 3 88899999999999976 3445566666665 777777777777 3333343 333344 4889999
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc-cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHH
Q 007818 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ-LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236 (588)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 236 (588)
.|++++|++++.++.+.+ +.+..-...+...|.. .++ +.+..++.. .+..++.....+++.|.+.|+.++|.+
T Consensus 195 l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~ 268 (987)
T PRK09782 195 LKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQH 268 (987)
T ss_pred HhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999885 3344445566667776 366 777777442 334588889999999999999999999
Q ss_pred HHHhcCCC-----CcchHHH------------------------------HHHHH-------------------------
Q 007818 237 IFDSMVNK-----TVVSCTT------------------------------MIVGY------------------------- 256 (588)
Q Consensus 237 ~~~~~~~~-----~~~~~~~------------------------------ll~~~------------------------- 256 (588)
+++++... +..+|-- ++..+
T Consensus 269 ~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 348 (987)
T PRK09782 269 YLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEER 348 (987)
T ss_pred HHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHH
Confidence 99988431 1111110 12222
Q ss_pred --------------------------------------HhcCCHHHHHHHhhhCCCC--Ccc----cHHHHHHHHHhcCC
Q 007818 257 --------------------------------------AKFGFLDIARKIFDDLPEK--YVV----PWNAIIGGYVQAKR 292 (588)
Q Consensus 257 --------------------------------------~~~~~~~~a~~~~~~~~~~--~~~----~~~~l~~~~~~~~~ 292 (588)
.+.|+.++|..+|+..... +.. ...-++..|.+.+.
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 428 (987)
T PRK09782 349 YAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY 428 (987)
T ss_pred HhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence 2344455555555544331 110 12234444444433
Q ss_pred ---hHHHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCC
Q 007818 293 ---SKEALAL----------------------FHEMQAT-GI-KP--DAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343 (588)
Q Consensus 293 ---~~~a~~~----------------------~~~~~~~-~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 343 (588)
..++..+ +...... +. ++ +...+..+..++.. ++.++|...+.......
T Consensus 429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~- 506 (987)
T PRK09782 429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ- 506 (987)
T ss_pred ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-
Confidence 2222211 1111110 11 12 34444444444444 67777888776666553
Q ss_pred CCcchHHHHHHHHhHhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007818 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 421 (588)
|+......+...+...|++++|...|+++.. ++...+..+..++.+.|++++|...+++..+.. +++...+..+..
T Consensus 507 -Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~ 584 (987)
T PRK09782 507 -PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHA 584 (987)
T ss_pred -CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 4444333445555689999999999987653 444556677788889999999999999998864 333334444444
Q ss_pred HhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHH
Q 007818 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSI 499 (588)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~ 499 (588)
.....|++++|...+++..+. .|+...+..+..++.+.|++++|.+.+++. ...| +...+..+..++...|++++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 555679999999999999864 467888999999999999999999999987 3556 46677778788999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 500 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|+..++++++..|+++.++..++.++...|++++|+..++++.+..
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999998754
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-21 Score=199.21 Aligned_cols=523 Identities=8% Similarity=0.004 Sum_probs=357.3
Q ss_pred CcCCchhhHHHHhhcccCCCChhhHHhhcccCC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcc-cH-
Q 007818 7 ISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ--NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF-TY- 82 (588)
Q Consensus 7 ~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~- 82 (588)
|-+..++..|..+|. +.|++++|+..+++.. .|+...|..++..+ +++.+|.++|+++.. ..|+.. .+
T Consensus 75 P~n~~~~~~LA~~yl--~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~---~~P~n~~~~~ 146 (987)
T PRK09782 75 PDNIPLTLYLAEAYR--HFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLA---QQKACDAVPT 146 (987)
T ss_pred CCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHH---hCCCChhHHH
Confidence 455677788888888 8999999999988754 33333333333222 777777788877776 223321 22
Q ss_pred --------------------------------------HHH-HHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHH
Q 007818 83 --------------------------------------PLL-FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHV 123 (588)
Q Consensus 83 --------------------------------------~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (588)
... .+.|.+.+++++|..++..+.+.+. .+......|-.+
T Consensus 147 ~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~a 225 (987)
T PRK09782 147 LRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDV 225 (987)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 111 3444455566666666666666542 333334444445
Q ss_pred HHh-CCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCC-CCcchHHHH---------------
Q 007818 124 FVS-CGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE-PDEVTMIGM--------------- 186 (588)
Q Consensus 124 ~~~-~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l--------------- 186 (588)
|.. .++ +.+..+++...+.+...+..+...+.+.|+.++|.++++++...-.. |...++..+
T Consensus 226 y~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 226 LLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred HHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 555 244 55555555433456777788888899999999999998887654222 332222211
Q ss_pred ---------------HHHHhccCChhHHHHHHH-----------------------------HHHHhCCCCChhhHHHHH
Q 007818 187 ---------------VSACAQLEDLNLGREIHW-----------------------------YISESGLTLTVPLANALM 222 (588)
Q Consensus 187 ---------------l~~~~~~~~~~~a~~~~~-----------------------------~~~~~~~~~~~~~~~~l~ 222 (588)
+..+.+.++++.++++.. .+.+. .+-+.....-+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~ 383 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLT 383 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHH
Confidence 223333444443333321 11111 011233333344
Q ss_pred HHHHhcCChhHHHHHHHhcCC-C-C----cchHHHHHHHHHhcCC---HHHHHHH-------------------------
Q 007818 223 DMYVKCGKLESAEEIFDSMVN-K-T----VVSCTTMIVGYAKFGF---LDIARKI------------------------- 268 (588)
Q Consensus 223 ~~~~~~g~~~~A~~~~~~~~~-~-~----~~~~~~ll~~~~~~~~---~~~a~~~------------------------- 268 (588)
....+.|+.++|.++|+.... + + ......++..+.+.+. ..++..+
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 455677899999999988855 2 1 2233356666666554 2222222
Q ss_pred hhhCCCC-----CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCC
Q 007818 269 FDDLPEK-----YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343 (588)
Q Consensus 269 ~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 343 (588)
+...... +...|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...++.+...
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-- 538 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-- 538 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 2222222 33347777777776 7888999988888775 477665545556667899999999999987654
Q ss_pred CCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAII---GGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
+|+...+..+...+.+.|++++|...++...+.++....... ......|++++|+..+++..+. .|+...+..+.
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA 616 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARA 616 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 344455667778889999999999999988765444433333 3344559999999999999985 67788899999
Q ss_pred HHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHH
Q 007818 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVS 498 (588)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 498 (588)
.++.+.|++++|+..+++... ..+.+...+..+..++...|++++|++.+++. ...| +...+..+..++...|+++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999997 34556788889999999999999999999987 3455 5778889999999999999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccC
Q 007818 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT 549 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 549 (588)
+|+..+++++++.|++..+....++...+..+++.|.+.+++....++...
T Consensus 695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999999999999999999999999999998877655433
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-22 Score=182.58 Aligned_cols=378 Identities=15% Similarity=0.149 Sum_probs=276.7
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCh-hhHHHHHH
Q 007818 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTV-PLANALMD 223 (588)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 223 (588)
..+|..+...+-..|+++.|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++.. |+. .....+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 3445555555555555555555555555431 1123345555555555555555555555554431 211 12233333
Q ss_pred HHHhcCChhHHHHHHHhcCCCC---cchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcc---cHHHHHHHHHhcCChHHHH
Q 007818 224 MYVKCGKLESAEEIFDSMVNKT---VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV---PWNAIIGGYVQAKRSKEAL 297 (588)
Q Consensus 224 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~ 297 (588)
.....|+..+|...+-+..+.+ ...|+.+...+-.+|+...|+..|++...-++. .|-.|...|...+.+++|.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 4444566666666665554332 245666666666677777777777766554432 3778888898999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC-
Q 007818 298 ALFHEMQATGIKPD-AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE- 375 (588)
Q Consensus 298 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~- 375 (588)
..|...... +|+ ...+..+...|...|.++.|+..+++..+..+. -+..|+.+..++-..|+..+|.+.|.+...
T Consensus 273 s~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l 349 (966)
T KOG4626|consen 273 SCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL 349 (966)
T ss_pred HHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999887764 454 456677777788999999999999988876422 356789999999999999999999998764
Q ss_pred --CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hHH
Q 007818 376 --RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE-ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKH 451 (588)
Q Consensus 376 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 451 (588)
....+.+.|...|...|.+++|..+|....+ +.|.- ...+.+...|-++|++++|+..++++. .+.|+ ...
T Consensus 350 ~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda 424 (966)
T KOG4626|consen 350 CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADA 424 (966)
T ss_pred CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHH
Confidence 3456788999999999999999999999887 45654 478889999999999999999999998 55777 678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
|+.+...|...|+...|.+.+.++ ...|. ....+.+...+...|++.+|++.++.++++.|+-|.++.+++.++.--.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vc 504 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVC 504 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHh
Confidence 999999999999999999999887 45665 5688899999999999999999999999999999999999988876655
Q ss_pred ChHH
Q 007818 530 MWEE 533 (588)
Q Consensus 530 ~~~~ 533 (588)
+|.+
T Consensus 505 dw~D 508 (966)
T KOG4626|consen 505 DWTD 508 (966)
T ss_pred cccc
Confidence 5544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-20 Score=174.36 Aligned_cols=420 Identities=13% Similarity=0.076 Sum_probs=337.6
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcc
Q 007818 117 HNAVIHVFVSCGDLGLACNVFDESCVR---NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193 (588)
Q Consensus 117 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 193 (588)
...|.+-..+.|++.+|++.....-.. +....-.+-..+.+..+.+....--....+. .+--..+|..+.+.+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence 344556667789999998876553222 1112222233455555666554443333332 244567899999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchH---HHHHHHHHhcCCHHHHHHHhh
Q 007818 194 EDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC---TTMIVGYAKFGFLDIARKIFD 270 (588)
Q Consensus 194 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~ 270 (588)
|+++.|..+++.+++.... ....|..+..++...|+.+.|...|....+-++..+ +.+...+-..|+.++|...+.
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999999988543 677899999999999999999999999877665433 234444556889999998888
Q ss_pred hCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCc
Q 007818 271 DLPEKYV---VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD-AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN 346 (588)
Q Consensus 271 ~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 346 (588)
+..+..+ ..|..|.-.+..+|+...|+..|++.... .|+ ...|..+-..|...+.++.|...+....... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 7665433 33999999999999999999999999885 454 4578888999999999999999887776653 224
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCC--CC-cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPE--RN-SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
...+..+...|..+|.++.|...|++..+ |+ +..|+.|..++-..|+..+|...|.+..... +-.....+.+...+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~ 364 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIY 364 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 55677788889999999999999999874 43 5689999999999999999999999998852 33456889999999
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHH
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A 500 (588)
...|.++.|..+|....+ +.|. ....+.|...|..+|++++|...+++. .++|. ...++.+...|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 999999999999999986 3454 677899999999999999999999986 67786 66899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
++.+.+++..+|--+.++.+|+.+|..+|+..+|+.-++...+..
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-19 Score=187.27 Aligned_cols=419 Identities=11% Similarity=-0.020 Sum_probs=278.5
Q ss_pred HHHHHHHhCCChhHHHHHhccC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCh
Q 007818 119 AVIHVFVSCGDLGLACNVFDES--CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196 (588)
Q Consensus 119 ~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 196 (588)
.....+.+.|+++.|+..|++. ..|+...|..+..+|.+.|++++|++.++...+.. +.+...+..+..++...|++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 4445566677777777777663 23455566666777777777777777777766542 22334566666677777777
Q ss_pred hHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC
Q 007818 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276 (588)
Q Consensus 197 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 276 (588)
++|...+..+...+...+.. ...++..+........+...++.-. .+...+..+.. +...........-+....+.+
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred HHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccccc
Confidence 77776665554432211111 1111111111111222333332211 12222222222 211111111111111111111
Q ss_pred cc---cHHHHHHHH---HhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcch
Q 007818 277 VV---PWNAIIGGY---VQAKRSKEALALFHEMQATG-IKP-DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVV 348 (588)
Q Consensus 277 ~~---~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 348 (588)
.. .+..+...+ ...+++++|.+.|+...+.+ ..| ....+..+...+...|++++|...++...+... ....
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHH
Confidence 11 111111111 23468999999999998865 234 345567777778889999999999999887642 2355
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 425 (588)
.+..+...+...|++++|...|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 777888899999999999999988763 356788899999999999999999999999863 3455677888889999
Q ss_pred CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-------h-HHHHHHHHHHhhCC
Q 007818 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADV-------V-VWGALFFACRLHGN 496 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~-------~-~~~~l~~~~~~~~~ 496 (588)
.|++++|...+++..+ ..+.+...++.+..++...|++++|.+.|++. ...|+. . .+......+...|+
T Consensus 446 ~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999987 44556888999999999999999999999986 333321 1 11122222344699
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+++|...++++++++|++..++..++.++.+.|++++|+++|++..+..
T Consensus 524 ~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 524 FIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999997653
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-18 Score=171.24 Aligned_cols=430 Identities=11% Similarity=0.060 Sum_probs=259.6
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHhccCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcch--H
Q 007818 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVR------NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVT--M 183 (588)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~ 183 (588)
-++.+.+.|.+.|...|++..+..+....... -..+|-.+.++|-..|++++|...|-+..+. .|+..+ +
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 34455555555555555555555555442211 1223445555555555555555555544433 233322 2
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcC----ChhHHHHHHHhcCCC---CcchHHHHHHHH
Q 007818 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG----KLESAEEIFDSMVNK---TVVSCTTMIVGY 256 (588)
Q Consensus 184 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~ll~~~ 256 (588)
.-+...+...|+.+.+...|+.+.+. .+.+..+...|...|...+ ..+.|..++....++ |...|-.+...+
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 23445555555555555555555554 2224444445555554443 344455555444433 222333333333
Q ss_pred HhcCC------HHHHHHHhhhCCCC-CcccHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHH
Q 007818 257 AKFGF------LDIARKIFDDLPEK-YVVPWNAIIGGYVQAKRSKEALALFHEMQAT---GIKPDA------VTTVHCLS 320 (588)
Q Consensus 257 ~~~~~------~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~------~~~~~l~~ 320 (588)
....- +..|..++...... .+...|.+...+...|.+..|...|+..... ...+|. .+--.+..
T Consensus 425 e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar 504 (1018)
T KOG2002|consen 425 EQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR 504 (1018)
T ss_pred HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH
Confidence 22221 22233333222222 1222677777777777888887777776654 112222 12233444
Q ss_pred HHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC---CCCcchHHHHHHHHHhcCChHHH
Q 007818 321 ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP---ERNSLTYTAIIGGLALHGKALDA 397 (588)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 397 (588)
..-..++.+.|.+.++.+.+..+. -+..|-.++.+....+...+|...++.+. ..++..+..+...+.....+..|
T Consensus 505 l~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 505 LLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 555666777777877777765311 12222233322233356677777777665 34667777777788887777777
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHhcc------------CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC
Q 007818 398 ISYFSEMIGVG-LMPDEITFLGILSACCH------------GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464 (588)
Q Consensus 398 ~~~~~~~~~~~-~~p~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (588)
.+-|+...+.- ..+|..+...|.+.|.. .+..++|+++|.++.+ ..+.+...-+.+.-.++..|+
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccC
Confidence 77666655432 23566666666665542 2456788888888887 556777888889999999999
Q ss_pred hHHHHHHHHhCCC--CCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC--CCCCchHHHHHHHHHccCChHHHHHHHHH
Q 007818 465 LEEAEQLIRSMPM--AADVVVWGALFFACRLHGNVSIGERAAMKLLELD--PQDSGIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 465 ~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
+.+|..+|.+... .....+|..+...|..+|++-.|+++|+..++.. .+++.++..|++++.+.|.+.+|.+....
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999998852 2356789999999999999999999999998644 34788899999999999999999999988
Q ss_pred HHhcCCc
Q 007818 541 MEERGVE 547 (588)
Q Consensus 541 ~~~~~~~ 547 (588)
.....+.
T Consensus 742 a~~~~p~ 748 (1018)
T KOG2002|consen 742 ARHLAPS 748 (1018)
T ss_pred HHHhCCc
Confidence 8765443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-17 Score=174.85 Aligned_cols=408 Identities=11% Similarity=0.003 Sum_probs=216.6
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCC
Q 007818 83 PLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSG 159 (588)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~ 159 (588)
.-.+......|+.++|..++....... +.+...+..+...+.+.|++++|..+|++ ..+.+...+..+...+...|
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 344455555666666666666665422 23334455666666666666666666665 23334455556666666677
Q ss_pred ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 007818 160 FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFD 239 (588)
Q Consensus 160 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 239 (588)
++++|+..+++..+.. +.+.. +..+...+...|+.++|...++.+.+..+. +...+..+..++...|..+.|++.++
T Consensus 98 ~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 98 QYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 7777777777766542 22333 555666666677777777777777766333 44555556667777777777777777
Q ss_pred hcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCCh---HHHHHHHHHHHHC-CCCCCHH-H
Q 007818 240 SMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS---KEALALFHEMQAT-GIKPDAV-T 314 (588)
Q Consensus 240 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~-~~~p~~~-~ 314 (588)
.... ++..... +. ...+...+... +.......+++ ++|++.++.+.+. ...|+.. .
T Consensus 175 ~~~~-~p~~~~~-l~-------~~~~~~~~r~~----------~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~ 235 (765)
T PRK10049 175 DANL-TPAEKRD-LE-------ADAAAELVRLS----------FMPTRSEKERYAIADRALAQYDALEALWHDNPDATAD 235 (765)
T ss_pred hCCC-CHHHHHH-HH-------HHHHHHHHHhh----------cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchH
Confidence 6654 2210000 00 00000000000 00001111223 5677777777653 1223221 1
Q ss_pred HHH----HHHHHcccCChhHHHHHHHHHHHhCCC-CcchHHHHHHHHhHhcCChhHHHHHhccCCCCC-------cchHH
Q 007818 315 TVH----CLSACSQLGALDDGIWIHRFIEKENFN-LNVVLGTALVDMYAKCGNIAKALQVFHEMPERN-------SLTYT 382 (588)
Q Consensus 315 ~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~ 382 (588)
+.. .+.++...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|...|+++.+.+ .....
T Consensus 236 ~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 236 YQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 110 122334556677777777766665422 221 11224556666777777777766654321 12344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGL-----------MPDE---ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 448 (588)
.+..++...|++++|..+++.+..... .|+. ..+..+...+...|++++|++.++++.. ..+.+
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n 392 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGN 392 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 455566667777777777776665420 1221 1233445555566666666666666655 33444
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
...+..++..+...|++++|++.++++. ..|+ ...+...+..+...|++++|+..++++++..|+++.
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 5556666666666666666666666552 3343 334444444555666666666666666666666553
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-19 Score=176.31 Aligned_cols=299 Identities=10% Similarity=0.009 Sum_probs=202.2
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 007818 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301 (588)
Q Consensus 222 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 301 (588)
...+...|++++|...|.++.+.++. +...+..+...+...|++++|..+++
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~----------------------------~~~~~~~la~~~~~~g~~~~A~~~~~ 93 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE----------------------------TVELHLALGNLFRRRGEVDRAIRIHQ 93 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc----------------------------cHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 34456667777777777777544321 11124444455555555555555555
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCC-
Q 007818 302 EMQATGIKPD---AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN- 377 (588)
Q Consensus 302 ~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 377 (588)
.+...+..++ ...+..+...+...|+++.|..+++.+.+.. +.+..++..++..+...|++++|.+.++.+.+.+
T Consensus 94 ~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (389)
T PRK11788 94 NLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG 172 (389)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC
Confidence 5554321111 1234455555555566666666665555432 2234455566666666666666666666554321
Q ss_pred -------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChH
Q 007818 378 -------SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK 450 (588)
Q Consensus 378 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 450 (588)
...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+. +......
T Consensus 173 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~ 250 (389)
T PRK11788 173 DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSE 250 (389)
T ss_pred CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHH
Confidence 1134556777888899999999999988753 334557777888899999999999999999864 2222245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc--
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD-- 527 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 527 (588)
.+..++.+|...|++++|.+.++++. ..|+...+..++..+.+.|++++|...++++++..|+++ .+..+...+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~ 329 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhcc
Confidence 67888999999999999999999873 457766677888889999999999999999999999766 44444444443
Q ss_pred -cCChHHHHHHHHHHHhcCCccCCce
Q 007818 528 -SNMWEEAGKVRKMMEERGVEKTPGC 552 (588)
Q Consensus 528 -~g~~~~A~~~~~~~~~~~~~~~~~~ 552 (588)
.|+.++|..+++++.++++.++|.+
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCCE
Confidence 5699999999999999888888873
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.7e-18 Score=175.76 Aligned_cols=404 Identities=11% Similarity=0.015 Sum_probs=280.9
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHH
Q 007818 111 DVDMYVHNAVIHVFVSCGDLGLACNVFDESCV---RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187 (588)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 187 (588)
+.++....-.+.+....|+.++|++++.+..+ .+...+..+...+...|++++|.+++++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 45566666777777888888888888887543 344457888888888888888888888877652 33445566677
Q ss_pred HHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHH
Q 007818 188 SACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK---TVVSCTTMIVGYAKFGFLDI 264 (588)
Q Consensus 188 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~ 264 (588)
..+...|+.++|...++.+.+... .+.. +..+..++...|+.++|+..++++.+. +...+..+...+...+..+.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 777888888888888888887733 3445 777788888888888888888887553 22334444555555555555
Q ss_pred HHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----cccCCh---hHHHHHHH
Q 007818 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC-----SQLGAL---DDGIWIHR 336 (588)
Q Consensus 265 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~~~~---~~a~~~~~ 336 (588)
|.+.++.+.. ++. +. ...+. ......+... ...+++ +.|+..++
T Consensus 169 Al~~l~~~~~-~p~-~~-------------~~l~~-------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 169 ALGAIDDANL-TPA-EK-------------RDLEA-------------DAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHHHHhCCC-CHH-HH-------------HHHHH-------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 5555554443 111 00 00000 0001111111 112223 66778887
Q ss_pred HHHHh-CCCCcch-HHH-H---HHHHhHhcCChhHHHHHhccCCCCC---cc-hHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007818 337 FIEKE-NFNLNVV-LGT-A---LVDMYAKCGNIAKALQVFHEMPERN---SL-TYTAIIGGLALHGKALDAISYFSEMIG 406 (588)
Q Consensus 337 ~~~~~-~~~~~~~-~~~-~---l~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 406 (588)
.+.+. ...|+.. .+. . .+..+...|++++|...|+.+.+.+ +. .-..+..+|...|++++|+..|+++.+
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 77754 2233321 111 1 1234467799999999999988542 21 223357789999999999999999876
Q ss_pred CCCCC---CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcC----------CCCC---hHHHHHHHHHHHhcCChHHHHH
Q 007818 407 VGLMP---DEITFLGILSACCHGGLVDEGRKYFAQMSSIFR----------LSPK---LKHYSCMVDLLGRSGLLEEAEQ 470 (588)
Q Consensus 407 ~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~ 470 (588)
..... .......+..++...|++++|.++++.+..... ..|+ ...+..++..+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 53111 124566677788999999999999999987410 0122 2345677888999999999999
Q ss_pred HHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 471 LIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 471 ~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+++++. ..| +...+..++..+...|++++|++.+++++++.|+++..+..++..+.+.|++++|.++++++.+..
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999873 334 567888888889999999999999999999999999999999999999999999999999998753
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-18 Score=174.56 Aligned_cols=409 Identities=9% Similarity=-0.055 Sum_probs=252.9
Q ss_pred HhCCChhHHHHHhccCCCC------CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhH
Q 007818 125 VSCGDLGLACNVFDESCVR------NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198 (588)
Q Consensus 125 ~~~~~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 198 (588)
.+..+++.-.-+|...++. +......++..+.+.|+++.|..+++...... +-+...+..++.++...|+.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence 3455555555555443221 22233444555666666666666666665542 2222333344445555666666
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcc
Q 007818 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278 (588)
Q Consensus 199 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 278 (588)
|...++.+.+..+. +...+..+...+...|++++|...+++..+.++ .+..
T Consensus 95 A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P----------------------------~~~~ 145 (656)
T PRK15174 95 VLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFS----------------------------GNSQ 145 (656)
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------------------------CcHH
Confidence 66666666655322 344555555556666666666665555533211 1222
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhH
Q 007818 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358 (588)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (588)
.+..+...+...|++++|...++.+.... |+.......+..+...|++++|...++.+.+....++......+...+.
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 35556666777777777777777665543 2222222222335667777777777777666543333444445566777
Q ss_pred hcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHH
Q 007818 359 KCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALD----AISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431 (588)
Q Consensus 359 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 431 (588)
..|++++|...+++..+ .+...+..+...+...|++++ |+..|++..+.. +.+...+..+...+...|++++
T Consensus 224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~e 302 (656)
T PRK15174 224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEK 302 (656)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888877653 245567778888888888875 788898888753 3345678888889999999999
Q ss_pred HHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhH-HHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVV-WGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
|...++++.+. .+.+...+..+..+|.+.|++++|.+.++++. ..|+... +..+..++...|++++|...++++++
T Consensus 303 A~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 303 AIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999998874 34456677788889999999999999998874 4565433 33345667889999999999999999
Q ss_pred cCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCC--CCCcchHHHHHHHHHHHhh
Q 007818 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRD--KSHPELEQIYDCLVQLTRH 587 (588)
Q Consensus 510 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 587 (588)
..|++. ...+++|...+.+..+.--.+...-.|.. -+.++ ..++..+.....|.-+++|
T Consensus 381 ~~P~~~------------~~~~~ea~~~~~~~~~~~~~~~~~~~W~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (656)
T PRK15174 381 ARASHL------------PQSFEEGLLALDGQISAVNLPPERLDWAW-------EVAGRQSGIERDEWERRAKWGYLADN 441 (656)
T ss_pred hChhhc------------hhhHHHHHHHHHHHHHhcCCccchhhHHH-------HHhcccccCChHHHHHHHHhhHHHHH
Confidence 999764 34556777777777654333332212320 01221 3455555555555555544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-17 Score=159.50 Aligned_cols=514 Identities=13% Similarity=0.065 Sum_probs=344.8
Q ss_pred hhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhc-CCCCCCcccHHHHHHHHHccCChhhHHHHHH
Q 007818 28 LDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRN-GGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103 (588)
Q Consensus 28 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 103 (588)
++.|-..|..+. ++|.-..-.=.......+++..|+.+|...... ...+||+.+ .+..++.+.++.+.|...|+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 467777776654 333333333333445567899999999986551 234455543 33456678899999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhC---CChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCC-
Q 007818 104 HVLKLGFDVDMYVHNAVIHVFVSC---GDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERV- 176 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~- 176 (588)
++.+..+ -++.++-.|...-... ..+..+..++.. ....|+...+.|...+.-.|++..++.+...+.....
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 9988652 2333333333222222 335566666655 3456888889999999999999999999888876421
Q ss_pred -CCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC---CcchHHHH
Q 007818 177 -EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK---TVVSCTTM 252 (588)
Q Consensus 177 -~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 252 (588)
..-...|..+.+++-..|++++|..+|.+..+.........+.-|...|...|+++.+...|+.+... +..+...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 12234577888999999999999999988877644333445567888999999999999999888553 33455555
Q ss_pred HHHHHhcC----CHHHHHHHhhhCCCCCcc---cHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHH
Q 007818 253 IVGYAKFG----FLDIARKIFDDLPEKYVV---PWNAIIGGYVQAKRSKEALALFHEM----QATGIKPDAVTTVHCLSA 321 (588)
Q Consensus 253 l~~~~~~~----~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~~~~l~~~ 321 (588)
...|+..+ ..+.|..++.......+. .|-.+...+-...-+ .++..|... ...+-.+.....+.+...
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl 461 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASL 461 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence 55565553 456777777776654433 355555555444333 335555443 344545677788888888
Q ss_pred HcccCChhHHHHHHHHHHHh---CCCCcc------hHHHHHHHHhHhcCChhHHHHHhccCCCCCc---chHHHHHHHHH
Q 007818 322 CSQLGALDDGIWIHRFIEKE---NFNLNV------VLGTALVDMYAKCGNIAKALQVFHEMPERNS---LTYTAIIGGLA 389 (588)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~ 389 (588)
....|+++.|...|...... ...++. .+--.+..++-..++++.|.+.|..+.+..+ ..|..++....
T Consensus 462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHH
Confidence 88889999998888776554 122222 1233355666677788888898888875433 34545544444
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh--------
Q 007818 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR-------- 461 (588)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------- 461 (588)
..++..+|...+....... .-++..+..+...+.+...+..|..-|+...+.....+|+.+.-.|...|.+
T Consensus 542 ~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred hccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 5577888888888877753 4555566666667777778888888777766653344566666666665542
Q ss_pred ----cCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHH
Q 007818 462 ----SGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535 (588)
Q Consensus 462 ----~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 535 (588)
.+..++|+++|.++ ...| +...-+.+.-.++..|++..|..+|.++.+-..+.+.+|.+++.+|..+|+|-.|+
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHH
Confidence 24567788887765 3444 45566667777888899999999998888877777888999999999999999999
Q ss_pred HHHHHHHhcCC
Q 007818 536 KVRKMMEERGV 546 (588)
Q Consensus 536 ~~~~~~~~~~~ 546 (588)
++|+...+.-.
T Consensus 701 qmYe~~lkkf~ 711 (1018)
T KOG2002|consen 701 QMYENCLKKFY 711 (1018)
T ss_pred HHHHHHHHHhc
Confidence 99988876544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-18 Score=170.64 Aligned_cols=288 Identities=16% Similarity=0.103 Sum_probs=132.0
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCC---hhhHHHHHHHHHhcCChhH
Q 007818 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT---VPLANALMDMYVKCGKLES 233 (588)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 233 (588)
..|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|...|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444444444444444431 11222344444444444444444444444443221111 1233444555555555555
Q ss_pred HHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcc--------cHHHHHHHHHhcCChHHHHHHHHH
Q 007818 234 AEEIFDSMVNK---TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV--------PWNAIIGGYVQAKRSKEALALFHE 302 (588)
Q Consensus 234 A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~ 302 (588)
|..+|+++.+. +..++..++..+.+.|++++|.+.++.+...++. .+..+...+...|++++|...+++
T Consensus 126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 126 AEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 55555554331 2223333333333333333333333332221110 123344455556666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--CCcch
Q 007818 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLT 380 (588)
Q Consensus 303 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~ 380 (588)
+.+.. +.+...+..+...+.+.|++++|.++++.+.+.+......+++.++.+|...|++++|...++++.+ |+...
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~ 284 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL 284 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH
Confidence 55532 2223344445555555566666666655555443222233445555555555555555555555432 33344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc---CCchHHHHHHHHHhhhhcCCCCCh
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH---GGLVDEGRKYFAQMSSIFRLSPKL 449 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 449 (588)
+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.++ ++.|++
T Consensus 285 ~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~-~~~~~p 353 (389)
T PRK11788 285 LLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE-QLKRKP 353 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH-HHhCCC
Confidence 455555555555555555555555543 4555555555444332 33555555555555544 444443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-16 Score=159.96 Aligned_cols=441 Identities=11% Similarity=0.036 Sum_probs=304.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCCCcc--cHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhC
Q 007818 50 IRGFLETGKMREAVDLYKQMLRNGGTRPDNF--TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (588)
+-...+.|++..|++.|++..+ ..|+.. .+ .++..+...|+.++|...+++... .-+........+...+...
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~---~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESK---AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHh---hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHc
Confidence 3345788999999999999877 456542 33 777777788999999999888882 1122233344445678888
Q ss_pred CChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHH
Q 007818 128 GDLGLACNVFDESC---VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHW 204 (588)
Q Consensus 128 ~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 204 (588)
|++++|+++|+++. +.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|.+.++
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999999998853 335566667777888889999999999888765 5565555444444444556656888888
Q ss_pred HHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC-CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHH
Q 007818 205 YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283 (588)
Q Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 283 (588)
++.+.. +.+...+..+..++.+.|-...|.++...-+.- +...+..+ ..+.+.+..+....+..
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~------ 258 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTR------ 258 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccc------
Confidence 888884 336777788888888888888888887765321 11111110 11111122111110000
Q ss_pred HHHHHhcC---ChHHHHHHHHHHHHC-CCCCCH-HHH----HHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHH
Q 007818 284 IGGYVQAK---RSKEALALFHEMQAT-GIKPDA-VTT----VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354 (588)
Q Consensus 284 ~~~~~~~~---~~~~a~~~~~~~~~~-~~~p~~-~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 354 (588)
...+ -.+.|+.-++.+... +-.|.. ..| .-.+-++...+++.++++.++.+...+.+....+-.++.
T Consensus 259 ----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 259 ----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 0011 134555555555542 112321 212 223456677888888888888888888666666778888
Q ss_pred HHhHhcCChhHHHHHhccCCCC---------CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCCH-
Q 007818 355 DMYAKCGNIAKALQVFHEMPER---------NSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-----------MPDE- 413 (588)
Q Consensus 355 ~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~- 413 (588)
++|...+++++|..+|+.+..+ +......|.-+|...+++++|..+++.+.+... .||+
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 9999999999999998887532 122246788888899999999999998887321 1232
Q ss_pred -H-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HhHHHHHHH
Q 007818 414 -I-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD-VVVWGALFF 489 (588)
Q Consensus 414 -~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~ 489 (588)
. .+..++..+...|++.+|++.++++.. .-|-+......+.+.+...|.+.+|++.++... ..|+ ..+....+.
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~ 492 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAE 492 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHH
Confidence 2 344567778899999999999999987 556778999999999999999999999998763 4564 556667777
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCCchH
Q 007818 490 ACRLHGNVSIGERAAMKLLELDPQDSGIY 518 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (588)
++...+++.+|.....++++..|+++..-
T Consensus 493 ~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 493 TAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 88889999999999999999999987443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-16 Score=164.47 Aligned_cols=417 Identities=10% Similarity=-0.037 Sum_probs=262.2
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCC
Q 007818 84 LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGF 160 (588)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 160 (588)
.....+.+.|++++|...|++.++. .|+...|..+..+|.+.|++++|++.++.. .+.+..+|..+..++...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 3444555666777777777766653 355556666666667777777777666652 33344566666667777777
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHh
Q 007818 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 161 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
+++|+..|......+ ..+......++..... ..+........+.. +++...+..+.. +...........-+..
T Consensus 210 ~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 777776665544321 1111111111111111 11122222222221 111112222211 1111111111111111
Q ss_pred cCCCCcc---hHHHHHHH---HHhcCCHHHHHHHhhhCCCCC------cccHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007818 241 MVNKTVV---SCTTMIVG---YAKFGFLDIARKIFDDLPEKY------VVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308 (588)
Q Consensus 241 ~~~~~~~---~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 308 (588)
..+.+.. .+..+... ....+.+++|.+.|+.....+ ...|+.+...+...|++++|+..+++..+.
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 1111111 11111111 122356777877777765432 223777778888899999999999998875
Q ss_pred CCC-HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--C-CcchHHHH
Q 007818 309 KPD-AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--R-NSLTYTAI 384 (588)
Q Consensus 309 ~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l 384 (588)
.|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++..+ | +...+..+
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 454 5577778888888999999999999887764 33567788889999999999999999988764 2 45567778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hH-------HHHHHH
Q 007818 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LK-------HYSCMV 456 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~ 456 (588)
...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|++.... .|+ .. .++...
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHH
Confidence 888999999999999999988752 445678888899999999999999999998864 222 11 122222
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 457 DLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
..+...|++++|.+++++. ...|+ ...+..+...+...|++++|+..+++++++.+....
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 3344579999999999885 45554 456788888999999999999999999998875433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-17 Score=170.37 Aligned_cols=357 Identities=11% Similarity=0.015 Sum_probs=260.0
Q ss_pred HhCCChhHHHHHHHHhHHC--CCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhH
Q 007818 156 VRSGFPREAIRLFRDMQLE--RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233 (588)
Q Consensus 156 ~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 233 (588)
.+..+|+.-.-.|..-.++ .-.-+......++..+.+.|+++.|..+++..+..... +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 4455555555454443221 01112233444555566666666666666666665333 23333444455555666666
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007818 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313 (588)
Q Consensus 234 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 313 (588)
|...++++...++ .+...+..+...+...|++++|...++++.+.. +.+..
T Consensus 95 A~~~l~~~l~~~P----------------------------~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~ 145 (656)
T PRK15174 95 VLQVVNKLLAVNV----------------------------CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQ 145 (656)
T ss_pred HHHHHHHHHHhCC----------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 6666655533222 223346677788889999999999999998852 33456
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCC----CcchHHHHHHHHH
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER----NSLTYTAIIGGLA 389 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~ 389 (588)
.+..+...+...|++++|...++.+......+.. .+..+ ..+...|++++|...++.+.+. +...+..+..++.
T Consensus 146 a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~ 223 (656)
T PRK15174 146 IFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC 223 (656)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 7778888999999999999999988776544332 33333 3478899999999999987643 2334455567889
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHH----HHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCCh
Q 007818 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE----GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465 (588)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (588)
..|++++|+..++++.+.. +.+...+..+...+...|++++ |...++++.+. .+.+...+..++..+.+.|++
T Consensus 224 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 224 AVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999864 4456678888899999999985 89999999873 345678899999999999999
Q ss_pred HHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 466 EEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 466 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
++|...++++. ..| +...+..+..++...|++++|+..++++++..|+++..+..++.++...|++++|.+.++++.+
T Consensus 301 ~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 301 EKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999873 445 4556777888899999999999999999999998887777788999999999999999999987
Q ss_pred cCCc
Q 007818 544 RGVE 547 (588)
Q Consensus 544 ~~~~ 547 (588)
....
T Consensus 381 ~~P~ 384 (656)
T PRK15174 381 ARAS 384 (656)
T ss_pred hChh
Confidence 6543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-16 Score=159.20 Aligned_cols=432 Identities=11% Similarity=0.010 Sum_probs=296.8
Q ss_pred HHHHHccCChhhHHHHHHHHHHhcCCCCh--hHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHH---HHHHHhCCC
Q 007818 86 FKVCASLGLRFLGYEIFGHVLKLGFDVDM--YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL---INGFVRSGF 160 (588)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~ 160 (588)
+-...+.|+++.|...|++..+.. |+. .++ .++..+...|+.++|+..+++...|+...+..+ ...+...|+
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 334568888999999999988865 332 344 777888888999999999888766644444333 346677799
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHh
Q 007818 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 161 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
+++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++.+++
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 999999999988763 333455666677778888888888888888776 33444444444444445666568888888
Q ss_pred cCCC---CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007818 241 MVNK---TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317 (588)
Q Consensus 241 ~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 317 (588)
+.+. +...+..+..++.+.|-...|.++...-+. ..+-..... =+.+.+.+..+. +..|+..
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~-----l~~~~~a~~vr~----a~~~~~~---- 259 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQ-----LERDAAAEQVRM----AVLPTRS---- 259 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHH-----HHHHHHHHHHhh----ccccccc----
Confidence 7543 344566666777777777777776665432 111000000 011112222111 1111100
Q ss_pred HHHHHcccCC---hhHHHHHHHHHHHh-CCCCcc-hHH-HH---HHHHhHhcCChhHHHHHhccCCCC----CcchHHHH
Q 007818 318 CLSACSQLGA---LDDGIWIHRFIEKE-NFNLNV-VLG-TA---LVDMYAKCGNIAKALQVFHEMPER----NSLTYTAI 384 (588)
Q Consensus 318 l~~~~~~~~~---~~~a~~~~~~~~~~-~~~~~~-~~~-~~---l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l 384 (588)
...+ .+.|+.-++.+... +..|.. ..| .+ -+-++...|+++++.+.|+.+..+ ...+-..+
T Consensus 260 ------~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 260 ------ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ------chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 1112 24444445554442 222321 222 22 344667889999999999999843 33466788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcC----------CCCC-
Q 007818 385 IGGLALHGKALDAISYFSEMIGVGL-----MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR----------LSPK- 448 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~- 448 (588)
.++|...+++++|..+|+++..... .++......|..++..++++++|..+++.+.+... -.|+
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 9999999999999999999876531 22333457889999999999999999999987311 0122
Q ss_pred --hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 449 --LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 449 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
...+..++..+...|++.+|++.++++. ..| +...+..+...+...|...+|++.++.+..+.|++..+....+.+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~ 493 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET 493 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence 2344567888899999999999999984 335 788888999999999999999999999999999999999999999
Q ss_pred HHccCChHHHHHHHHHHHhc
Q 007818 525 YRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 525 ~~~~g~~~~A~~~~~~~~~~ 544 (588)
+...|+|.+|.++.+.+.+.
T Consensus 494 al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 494 AMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHhhhhHHHHHHHHHHHHhh
Confidence 99999999999998777554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-17 Score=144.70 Aligned_cols=460 Identities=13% Similarity=0.074 Sum_probs=298.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHH-HHHHHHHccCChhhHHHHHHHHHHhcCCCChhH----HHHHHH
Q 007818 48 VAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP-LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV----HNAVIH 122 (588)
Q Consensus 48 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~ 122 (588)
.|.+-|..+....+|+..|+-+.+ ...-|+.-... .+...+.+.+.+.+|.++++..+..-+..+..+ .+.+--
T Consensus 206 nlaqqy~~ndm~~ealntyeiivk-nkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVK-NKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhc-ccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 344556666677788888877766 44556554332 233456677778888888877776543233222 333333
Q ss_pred HHHhCCChhHHHHHhccCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHH
Q 007818 123 VFVSCGDLGLACNVFDESC--VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200 (588)
Q Consensus 123 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 200 (588)
.+.+.|+++.|+.-|+... .||..+-..|+-++..-|+-++..+.|.+|+.--..||..-|. ....+++..
T Consensus 285 tfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi------~~~ddp~~~- 357 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI------KEKDDPDDN- 357 (840)
T ss_pred eEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc------CCcCCcchH-
Confidence 4567788888888877743 3555444445555556677778888888777644344443331 000010000
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhcC--ChhHHHHHHHhc----CCCCcc---------------------hHHHHH
Q 007818 201 EIHWYISESGLTLTVPLANALMDMYVKCG--KLESAEEIFDSM----VNKTVV---------------------SCTTMI 253 (588)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~----~~~~~~---------------------~~~~ll 253 (588)
++.+. .-+..++-.-+.+ +.++++-.-.++ ..++.. .-..-.
T Consensus 358 -ll~ea----------i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 358 -LLNEA----------IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred -HHHHH----------HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 00000 0011111111111 111111111111 111110 000112
Q ss_pred HHHHhcCCHHHHHHHhhhCCCCCcccH----HHHHHHH-Hh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCC
Q 007818 254 VGYAKFGFLDIARKIFDDLPEKYVVPW----NAIIGGY-VQ-AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA 327 (588)
Q Consensus 254 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~l~~~~-~~-~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 327 (588)
..+.+.|+++.|.++++-....+..+- +.|...+ .+ -.++..|..+-+...... +-+......--......|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCc
Confidence 237789999999999988877665552 2222222 22 335666666666554432 2233333333334456799
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007818 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP---ERNSLTYTAIIGGLALHGKALDAISYFSEM 404 (588)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 404 (588)
+++|...+++.....-.-....|| +.-.+-..|++++|++.|-++. ..+..+.-.+.+.|....++.+|++++.+.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 999999999988764332333333 3445678899999999997765 467778888899999999999999999887
Q ss_pred HHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhH
Q 007818 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVV 483 (588)
Q Consensus 405 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 483 (588)
... ++.|+.....+...|-+.|+-.+|.+.+-.--+ -++-+..+...|...|....-+++|..+|++.. .+|+..-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 765 566778899999999999999999998776655 567788999999999999999999999999885 6899999
Q ss_pred HHHHHHHH-HhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCCh
Q 007818 484 WGALFFAC-RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531 (588)
Q Consensus 484 ~~~l~~~~-~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (588)
|..++..| .+.|++++|...++...+..|.|..++..|.+.+...|..
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99988886 5689999999999999999999999999999999988864
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-14 Score=131.03 Aligned_cols=454 Identities=12% Similarity=0.030 Sum_probs=266.2
Q ss_pred ccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChhHHHHH
Q 007818 91 SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPREAIRL 167 (588)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 167 (588)
...+.+.|.-++.++.+.- +.+... .-+|++...++.|..+++. ..+.+...|.+....--.+|+.+.+.++
T Consensus 388 elE~~~darilL~rAvecc-p~s~dL----wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMDL----WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHHH----HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3344444555555555531 222222 2234444455555555543 3444555555555555555555555555
Q ss_pred HHHh----HHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCC--hhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 168 FRDM----QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLT--VPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 168 ~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
+++- ...|+..+...|..=...|-..|..-.+..+....+..|+... ..++..-...|.+.+.++-|..+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 4432 3345555555554444455555555555555555544444321 234444444444444454444444444
Q ss_pred CCC-------------------------------------CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCc---ccHH
Q 007818 242 VNK-------------------------------------TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYV---VPWN 281 (588)
Q Consensus 242 ~~~-------------------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~ 281 (588)
.+- ....|-.....+-..|+...|..++..+.+.++ ..|-
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwl 622 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWL 622 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHH
Confidence 332 222333334444455666666666655543222 2255
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC
Q 007818 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361 (588)
Q Consensus 282 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (588)
..+.....+..+++|..+|.+.... .|+...|.--+..---.++.++|++++++..+. ++.-...|..+.+.+-+.+
T Consensus 623 aavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 623 AAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHH
Confidence 5555556666666666666665553 455555554444445556666666666655554 2223445666666666666
Q ss_pred ChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHH
Q 007818 362 NIAKALQVFHEMPE--R-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438 (588)
Q Consensus 362 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 438 (588)
+.+.|.+.|..-.+ | .+..|..|...--+.|++-.|..+++..+..+ +-+...|...++.-.+.|..+.|..++.+
T Consensus 700 ~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666655543 2 34456666666666667777777777766654 44555666667777777777777777766
Q ss_pred hhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchH
Q 007818 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518 (588)
Q Consensus 439 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (588)
+.+ ..+.+...|..-|....+.++-....+.+++.. .|+.....+...+....++++|...|.++++.+|++..+|
T Consensus 779 ALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 779 ALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred HHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 666 444555566666666666666566666665553 3445556666677788899999999999999999999999
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECC
Q 007818 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNG 559 (588)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (588)
...-..+.+.|.-++-.++++..... +|.-|-.|..+..
T Consensus 855 a~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 855 AWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 99999999999999999999999764 4555656654443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-15 Score=132.51 Aligned_cols=405 Identities=13% Similarity=0.111 Sum_probs=272.5
Q ss_pred ccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHH--hCCChhH------------------------H
Q 007818 80 FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV--SCGDLGL------------------------A 133 (588)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~------------------------A 133 (588)
.+=+.+++. ...|.+..+.-+++.|.+.|++.+..+-..|+..-+ ...+..- .
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 455566554 456789999999999999998888877777765432 2222111 1
Q ss_pred HHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 007818 134 CNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213 (588)
Q Consensus 134 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (588)
.+++-+..+.+..+|.++|.++++-...+.|.+++++-.+...+.+..+||.+|.+-.-..+ .+++.+|.+..+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC
Confidence 12344445567778888888888888888888888888877778888888888876443222 67788888888888
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCCh
Q 007818 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRS 293 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 293 (588)
|..|+|+++.+..+.|+++.|.
T Consensus 272 nl~TfNalL~c~akfg~F~~ar---------------------------------------------------------- 293 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDAR---------------------------------------------------------- 293 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHH----------------------------------------------------------
Confidence 8888888888888888876654
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhH-HHHHHHHHHH----hCCCC----cchHHHHHHHHhHhcCChh
Q 007818 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD-GIWIHRFIEK----ENFNL----NVVLGTALVDMYAKCGNIA 364 (588)
Q Consensus 294 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~~~~~ 364 (588)
..|.+++.+|++.|+.|...+|..++..+.+.++..+ +..++..+.. ..++| +...|...+..|.+..+.+
T Consensus 294 ~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~ 373 (625)
T KOG4422|consen 294 KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLE 373 (625)
T ss_pred HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHH
Confidence 3567888899999999999999999888888877654 3444444432 22322 3344566677777888888
Q ss_pred HHHHHhccCCCC-----------CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHH
Q 007818 365 KALQVFHEMPER-----------NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433 (588)
Q Consensus 365 ~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 433 (588)
-|.++-.-+... ...-|..+....|+....+.-+..|+.|.-.-+-|++.+...++++..-.|.++-.-
T Consensus 374 LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ip 453 (625)
T KOG4422|consen 374 LAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIP 453 (625)
T ss_pred HHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHH
Confidence 777766554421 223466677778888888999999999988878899999999999998899998888
Q ss_pred HHHHHhhhhcCCCCChHHHHHHHHHHHhcC-Ch--------H-----HHHHHHHhCC--------CCCCHhHHHHHHHHH
Q 007818 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSG-LL--------E-----EAEQLIRSMP--------MAADVVVWGALFFAC 491 (588)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~~~~~~~~--------~~~~~~~~~~l~~~~ 491 (588)
++|..+..- |..........+...+++.+ +. . -|..+++... .+-....++..+-.+
T Consensus 454 Riw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll 532 (625)
T KOG4422|consen 454 RIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILL 532 (625)
T ss_pred HHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHH
Confidence 888888775 65555444444444454443 11 0 0111222111 122344455555556
Q ss_pred HhhCCHHHHHHHHHHHhccC---CCCCc--hHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 492 RLHGNVSIGERAAMKLLELD---PQDSG--IYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
.+.|..++|.+++....+.. |..|. +..-+.+.-.+......|..+++.+...+.+.
T Consensus 533 ~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~ 594 (625)
T KOG4422|consen 533 LRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI 594 (625)
T ss_pred HHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence 67777777777777775433 33322 22244555556677777777777776665544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-15 Score=131.70 Aligned_cols=373 Identities=12% Similarity=0.074 Sum_probs=215.5
Q ss_pred cCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhH
Q 007818 37 NVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYV 116 (588)
Q Consensus 37 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 116 (588)
+..+.+..+|..||.++|+-...++|.++|++... ...+.+..+||.+|.+-+-.. ..+++.+|.+..+.||..|
T Consensus 201 E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~-~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~T 275 (625)
T KOG4422|consen 201 ETLPKTDETVSIMIAGLCKFSSLERARELYKEHRA-AKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFT 275 (625)
T ss_pred hhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHH-hhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHh
Confidence 33455666777777777777777777777777666 345666677777766544222 2667777777777777777
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCh
Q 007818 117 HNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL 196 (588)
Q Consensus 117 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 196 (588)
+|+++.+.++.|+++.|. ..|++++.+|++-|+.|...+|..+|..+.+.++.
T Consensus 276 fNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp 328 (625)
T KOG4422|consen 276 FNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDP 328 (625)
T ss_pred HHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCc
Confidence 777777777777666654 45788899999999999999999999998888776
Q ss_pred hH-HHHHHHHHHHh--C--CC----CChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHH
Q 007818 197 NL-GREIHWYISES--G--LT----LTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARK 267 (588)
Q Consensus 197 ~~-a~~~~~~~~~~--~--~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 267 (588)
.+ +..++.++... | +. .+...|...+..|.+..+.+-|.++..-+...+...+ .|.
T Consensus 329 ~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~---------ig~------ 393 (625)
T KOG4422|consen 329 QKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKF---------IGP------ 393 (625)
T ss_pred hhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhh---------cCh------
Confidence 44 44455555432 1 22 2344566777777777777777766555433211000 000
Q ss_pred HhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc
Q 007818 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347 (588)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 347 (588)
.+ ....-|..+....++....+.-...|+.|.-.-.-|+..+...++++..-.+.++-..+++..+...|...+.
T Consensus 394 ~~-----~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 394 DQ-----HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 00 0001144555666666777777777777777666777777777777777777777777777777766644433
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA--LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 425 (588)
.....++..+++.+- .|+...-..+-.+.. ...-.+.....-.+|++. .......+.++-.+.+
T Consensus 469 ~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R 534 (625)
T KOG4422|consen 469 DLREEILMLLARDKL------------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLR 534 (625)
T ss_pred HHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHH
Confidence 333333333333220 111110000100000 001111122222334433 2333445555555666
Q ss_pred CCchHHHHHHHHHhhhhcCCCCChHHHH---HHHHHHHhcCChHHHHHHHHhC
Q 007818 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYS---CMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
.|..++|.+++..+.++.+--|.....+ .+++.-.+..+...|..+++-+
T Consensus 535 ~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 535 AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6777777777776654433333333344 3444445566666666666655
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-14 Score=137.56 Aligned_cols=518 Identities=14% Similarity=0.116 Sum_probs=285.3
Q ss_pred CCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHH
Q 007818 25 SKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEI 101 (588)
Q Consensus 25 ~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 101 (588)
.|+.++|.+++.++. +.+...|..|...|-..|+.+.+...+-.+. +-.+.|...|..+.......|++++|.-+
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 366666666665543 3444556666666666666555554432222 11222333444444444555555555555
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC---------------------------------------CC
Q 007818 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---------------------------------------CV 142 (588)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------------------------------------~~ 142 (588)
+.++++.. |++....-.-+..|-+.|+...|...|.++ ..
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55555543 233333333444444555555544444332 11
Q ss_pred -----CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC----------------------CcchHH----HHHHHHh
Q 007818 143 -----RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP----------------------DEVTMI----GMVSACA 191 (588)
Q Consensus 143 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----------------------~~~~~~----~ll~~~~ 191 (588)
-+...+++++..+.+...++.+......+......+ +...|. .++-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 133446666666777777777777666665411111 111111 2233344
Q ss_pred ccCChhHHHHHHHHHHHhCC--CCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC----CcchHHHHHHHHHhcCCHHHH
Q 007818 192 QLEDLNLGREIHWYISESGL--TLTVPLANALMDMYVKCGKLESAEEIFDSMVNK----TVVSCTTMIVGYAKFGFLDIA 265 (588)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a 265 (588)
..+..+....+...+.+..+ .-+...|..+.+++...|++..|+.+|..+... +...|-.+..+|...|..++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 55556666666666666653 335667888999999999999999999988653 556888899999999999999
Q ss_pred HHHhhhCCCCCccc---HHHHHHHHHhcCChHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHcccCChhHHHHH
Q 007818 266 RKIFDDLPEKYVVP---WNAIIGGYVQAKRSKEALALFHEMQA--------TGIKPDAVTTVHCLSACSQLGALDDGIWI 334 (588)
Q Consensus 266 ~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 334 (588)
.+.++.+....+.. -..|...+.+.|+.++|.+.+..+.. .+..|+..........+...|+.++-..+
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t 548 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINT 548 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 99999887655444 44566678889999999999988542 22345555555556666777777665444
Q ss_pred HHHHHHhCC----------------------CCcchHHHHHHHHhHhcCChhHHHHHhccCC--------CCCc----ch
Q 007818 335 HRFIEKENF----------------------NLNVVLGTALVDMYAKCGNIAKALQVFHEMP--------ERNS----LT 380 (588)
Q Consensus 335 ~~~~~~~~~----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~----~~ 380 (588)
...+..... .........++.+-.+.++.....+-...-. .-.. ..
T Consensus 549 ~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel 628 (895)
T KOG2076|consen 549 ASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFEL 628 (895)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHH
Confidence 433332110 0111111222222222222211111111110 0011 12
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHH---HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC---hHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGL--MPDEI---TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK---LKHY 452 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 452 (588)
+.-++..+++.+++++|+.+...+..... .++.. .-...+.+++..+++..|...++.+...++...+ ...|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34455667777888888887777665431 22221 1233445566777777777777777664332222 2333
Q ss_pred HHHHHH-----------------------------------HHhcCChHHHHHHHHhC-CCCCCHhHHHHHHH-HH----
Q 007818 453 SCMVDL-----------------------------------LGRSGLLEEAEQLIRSM-PMAADVVVWGALFF-AC---- 491 (588)
Q Consensus 453 ~~l~~~-----------------------------------~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~-~~---- 491 (588)
+..... +..++.+.-|+..+-++ ...|+.+..+..+. ++
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a 788 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLA 788 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 322222 22334555666554433 23344332222211 11
Q ss_pred ------HhhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 492 ------RLHGNVSIGERAAMKLLELDPQ--DSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 492 ------~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.++-..-++...+.+..++... ...++.+++++|...|-.--|..+++++++-.
T Consensus 789 ~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 789 LQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 1222334566666666655543 56789999999999999999999999997653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-13 Score=125.18 Aligned_cols=534 Identities=11% Similarity=0.058 Sum_probs=312.4
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCCh-hHHHHH
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDM-YVHNAV 120 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 120 (588)
+...|-...+--..++++..|..+|++.+. . -..+...+.-.+..=.+...+..|..++++++..- |.+ ..|...
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALd-v-d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY 147 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALD-V-DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-c-ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHH
Confidence 445565555555666667777777777665 1 12223334444444456666777777777766643 222 234444
Q ss_pred HHHHHhCCChhHHHHHhccC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhH
Q 007818 121 IHVFVSCGDLGLACNVFDES--CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198 (588)
Q Consensus 121 ~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 198 (588)
+..--..|++..|.++|++- -+|+..+|++.|..-.+.+.++.|..++++..-. .|+..+|..-.+.--+.|....
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 44444566777777777662 3566677777777777777777777777766543 4666666666666666777777
Q ss_pred HHHHHHHHHHh-CC-CCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC-----CcchHHHHHHHHHhcCCHHHHHHH---
Q 007818 199 GREIHWYISES-GL-TLTVPLANALMDMYVKCGKLESAEEIFDSMVNK-----TVVSCTTMIVGYAKFGFLDIARKI--- 268 (588)
Q Consensus 199 a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~--- 268 (588)
+..+|+...+. |- ..+...+.+....-.++..++.|.-+|+-..+. ....|..+..---+-|+....++.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 77777666554 21 112334455555555566666776666554332 122233333222233333222222
Q ss_pred -----hhhCCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--H---HHHH-HH-HH---cccCChhH
Q 007818 269 -----FDDLPEK---YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV--T---TVHC-LS-AC---SQLGALDD 330 (588)
Q Consensus 269 -----~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~---~~~l-~~-~~---~~~~~~~~ 330 (588)
++..... |-.+|-..+..--..|+.+...++|+..+.. ++|-.. . |..| |+ +| ....+.+.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1222222 3334555666666678888888888887765 455221 1 1111 11 11 35677788
Q ss_pred HHHHHHHHHHhCCCCcchHHHHH----HHHhHhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007818 331 GIWIHRFIEKENFNLNVVLGTAL----VDMYAKCGNIAKALQVFHEMPE--RNSLTYTAIIGGLALHGKALDAISYFSEM 404 (588)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 404 (588)
+.++++...+. ++....++.-+ .....++.++..|.+++..... |...+|..-|..-.+.++++.+..+|+..
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888777773 34444444433 3334577888888888887764 55667777777778888889999999888
Q ss_pred HHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhH
Q 007818 405 IGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVV 483 (588)
Q Consensus 405 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~ 483 (588)
++-+ +-+..+|......-...|+.+.|..+|+-+............|...|+.-...|.+++|..+++++- ..+...+
T Consensus 464 le~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 464 LEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred HhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 8864 4466778777777778889999999998888753333334566777777778889999999988873 3345556
Q ss_pred HHHHHHHHH-----hhC-----------CHHHHHHHHHHHhcc----CCCC--CchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 484 WGALFFACR-----LHG-----------NVSIGERAAMKLLEL----DPQD--SGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 484 ~~~l~~~~~-----~~~-----------~~~~A~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
|.++..--. +.+ +...|..+|+++... .|.. ...+..+...-...|.-.+...+-+.|
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 666554322 233 566788888888643 3321 223444445555566655555555544
Q ss_pred H---hcC--CccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHHHHh
Q 007818 542 E---ERG--VEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586 (588)
Q Consensus 542 ~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (588)
- ++. +..+.| .......+.-+++.+.+-|...++.+.-..|..
T Consensus 623 Pk~vKKrr~~~~edG--~~~~EEy~DYiFPed~~~~~~~K~LeaA~kWK~ 670 (677)
T KOG1915|consen 623 PKKVKKRRKIQREDG--DTEYEEYFDYIFPEDASATKNLKILEAAKKWKK 670 (677)
T ss_pred cHHHHhhhhhhcccC--chhHHHHHHhcCccccccCcchHHHHHHHHHHH
Confidence 2 111 222222 111223344455655455555567666666654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-12 Score=118.62 Aligned_cols=482 Identities=11% Similarity=0.001 Sum_probs=371.8
Q ss_pred CChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHH
Q 007818 26 KNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIF 102 (588)
Q Consensus 26 g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 102 (588)
.+.++|+.++.+.. +.+...|. +|.+..-|+.|..++....+ .++.+..+|.+-...=-++|+++.+.+++
T Consensus 390 E~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred cChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 34666777776643 33444444 45556678899999999887 36677778766666666888888888887
Q ss_pred HHHH----HhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC----C--CCCcccHHHHHHHHHhCCChhHHHHHHHHhH
Q 007818 103 GHVL----KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES----C--VRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172 (588)
Q Consensus 103 ~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 172 (588)
++-+ ..|+..+...|..-...|-+.|..-.+..+.... . ..--.+|+.-...|.+.+.++-|..+|....
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 7654 4577888888888888888888877777766652 1 1233578888899999999999999999887
Q ss_pred HCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC---CcchH
Q 007818 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK---TVVSC 249 (588)
Q Consensus 173 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~ 249 (588)
+- .+-+...|......--..|..+....+++.++..-. -....+.....-+...|+...|..++....+. +...|
T Consensus 544 qv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiw 621 (913)
T KOG0495|consen 544 QV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIW 621 (913)
T ss_pred hh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHH
Confidence 65 244555666666666778999999999999998843 36667777788888899999999999888543 45678
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhCCCCC--cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHcccC
Q 007818 250 TTMIVGYAKFGFLDIARKIFDDLPEKY--VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA-VTTVHCLSACSQLG 326 (588)
Q Consensus 250 ~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~ 326 (588)
-..+........++.|..+|....... ...|.--+...-..+..++|.+++++..+. -|+. ..|..+-..+.+.+
T Consensus 622 laavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence 888888899999999999999886643 344777677777788999999999998885 4554 45666677788888
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007818 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSE 403 (588)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 403 (588)
+++.|...|..-.+. .+..+..|-.|...--+.|++-.|..++++..- .+...|...++.-.+.|+.+.|..++.+
T Consensus 700 ~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888877554433 344667888888888899999999999998763 3677899999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-H
Q 007818 404 MIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD-V 481 (588)
Q Consensus 404 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~ 481 (588)
.++. ++.+...|..-|....+.++-..+...+++- .-|+.+.-.+...+.....+++|++.|.+.. ..|| .
T Consensus 779 ALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 779 ALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 8876 4666678888888887777755555554444 3466677788888999999999999999873 4554 6
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
.+|.-+...+..+|.-+.-..++.+...-+|.+...|.....--
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence 68888888899999999999999999999999888888776543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-12 Score=127.13 Aligned_cols=494 Identities=13% Similarity=0.067 Sum_probs=324.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 007818 46 WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFV 125 (588)
Q Consensus 46 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (588)
.-.....+...|+.++|.+++.++.+. .+.+...|.+|...|-..|+.+++...+-.+.-.. |.|...|..+.....
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 334444555569999999999999882 34456789999999999999999988776555433 556789999999999
Q ss_pred hCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHH----HHHHHHhccCChhH
Q 007818 126 SCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI----GMVSACAQLEDLNL 198 (588)
Q Consensus 126 ~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~~~~~~ 198 (588)
+.|.++.|.-.|.+. .+++...+---...|-+.|+...|.+.|.++.....+.|..-+. .+++.+...++.+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999884 44454444555678889999999999999998864322322233 34556677787899
Q ss_pred HHHHHHHHHHh-CCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCC----CC----------------------cchHH-
Q 007818 199 GREIHWYISES-GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN----KT----------------------VVSCT- 250 (588)
Q Consensus 199 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~----------------------~~~~~- 250 (588)
|.+.++..... +-..+...++.++..+.+...++.|......... +| ..++.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99988888774 2234667788999999999999999887766633 11 11111
Q ss_pred ---HHHHHHHhcCCHHHHHHHhhhCCCCC------cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007818 251 ---TMIVGYAKFGFLDIARKIFDDLPEKY------VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321 (588)
Q Consensus 251 ---~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 321 (588)
.+.-++......+....+...+...+ +..|..+..+|...|++..|+.+|..+.....--+...|..+..+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 22233344444444444444333333 233888899999999999999999999887555567788889999
Q ss_pred HcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcch------------HHHHHHHHH
Q 007818 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLT------------YTAIIGGLA 389 (588)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~l~~~~~ 389 (588)
+...|.++.|...++.+.... +-+...--.|...+.+.|++++|.+.+..+..||... --.....+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 999999999999999998764 2244555678888999999999999999977554210 111112223
Q ss_pred hcCChHHHHH----------------------------------------HHHHHHHCC---------------------
Q 007818 390 LHGKALDAIS----------------------------------------YFSEMIGVG--------------------- 408 (588)
Q Consensus 390 ~~~~~~~a~~----------------------------------------~~~~~~~~~--------------------- 408 (588)
+.|+.++=+. ....|...+
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 3333222111 111111110
Q ss_pred --CCCCH--HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChH----HHHHHHHHHHhcCChHHHHHHHHhCCC---
Q 007818 409 --LMPDE--ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK----HYSCMVDLLGRSGLLEEAEQLIRSMPM--- 477 (588)
Q Consensus 409 --~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 477 (588)
+..+. ..+..++.++++.+.+.+|..+...+....-+..+.. .-...+.+....+++..|.+.++.+..
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 11111 1345677889999999999999999887644444433 234455666788999999999988731
Q ss_pred ---CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 478 ---AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD-SGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 478 ---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.| ....|+..++...+.++-..-.+.+..+....|++ +......+..+...|.|..|+..+-++..
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 23 23345544444444444444444444444444444 33333334444455555555555555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=148.26 Aligned_cols=257 Identities=16% Similarity=0.106 Sum_probs=114.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC
Q 007818 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV-HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361 (588)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (588)
+...+...|++++|+++++.......+|+...|. .+...+...++.+.|...++.+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 4566778888999999986655443245444444 3444566788899999999888877544 55667777777 6889
Q ss_pred ChhHHHHHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhccCCchHHHHHHHHH
Q 007818 362 NIAKALQVFHEMPE--RNSLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYFAQ 438 (588)
Q Consensus 362 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 438 (588)
++++|.++++..-+ +++..+...+..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|++.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998877643 566777888889999999999999999977543 345667888889999999999999999999
Q ss_pred hhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 439 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
+.+. .|.+......++..+...|+.+++.++++... .+.++..+..+..++...|+.++|...++++.+..|+|+.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 9984 34457888899999999999999888887763 2345667888899999999999999999999999999999
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 517 IYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+..++.++...|+.++|.++.+++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-13 Score=124.49 Aligned_cols=387 Identities=14% Similarity=0.042 Sum_probs=245.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhc
Q 007818 150 SLINGFVRSGFPREAIRLFRDMQLERVEPD-EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228 (588)
Q Consensus 150 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 228 (588)
....-+.++|++++|++.|.+.++. .|| +..|.....+|...|+|+++.+.-...++.... -...+..-.+++-..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHhh
Confidence 3445567778888888888887775 566 556667777777788888777766666655221 123444445566666
Q ss_pred CChhHHHHHHHhc---CCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC--------------------------ccc
Q 007818 229 GKLESAEEIFDSM---VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY--------------------------VVP 279 (588)
Q Consensus 229 g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------------------~~~ 279 (588)
|++++|+.=+.-. ..-+..+...++.-..+.--...+.+-+..-..+. ...
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 7766664321111 00000000111111111111111222222100000 001
Q ss_pred HHHHHHHHHh--c---CChHHHHHHHHHHHHCC-CCCCH-----------HHHHHHHHHHcccCChhHHHHHHHHHHHhC
Q 007818 280 WNAIIGGYVQ--A---KRSKEALALFHEMQATG-IKPDA-----------VTTVHCLSACSQLGALDDGIWIHRFIEKEN 342 (588)
Q Consensus 280 ~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~-~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 342 (588)
...+..++.. . ..+..|...+.+-.... ..++. .+...-..-+.-.|+.-.+..-|+..++..
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 1112211111 1 12333333332221110 11111 111111122345678888888888888876
Q ss_pred CCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007818 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419 (588)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 419 (588)
..++. .|--+..+|....+.++-...|..... .|+.+|..-.+.+.-.+++++|..-|++.+... +-+...|..+
T Consensus 357 ~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl 434 (606)
T KOG0547|consen 357 PAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL 434 (606)
T ss_pred cccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence 54433 366677789999999999999988763 578899999999999999999999999998853 3344578778
Q ss_pred HHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-------H-hHHHHHHHH
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-------V-VVWGALFFA 490 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-------~-~~~~~l~~~ 490 (588)
.-+..+.+.++++...|++..+ .+|-.+..|+.....+..++++++|.+.|+.. ..+|+ . ...+..+-.
T Consensus 435 ~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 435 CCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 7788899999999999999998 66777899999999999999999999999976 34443 1 112222222
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
..-.+++..|+.+++++++++|....++..|+....+.|+.++|+++|++...
T Consensus 513 ~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 513 LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23348999999999999999999999999999999999999999999998754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-14 Score=137.87 Aligned_cols=529 Identities=12% Similarity=0.029 Sum_probs=293.9
Q ss_pred ccccCcCCchhhHHHHhhcccCCCChhhHHhhcccCC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC
Q 007818 3 ITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ----NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD 78 (588)
Q Consensus 3 ~~g~~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 78 (588)
..|+.||..+|..||.-|+ ..|+.+.|- +|.-|+ +-+...++.++.+..+.++.+.+. .|.
T Consensus 18 ~~gi~PnRvtyqsLiarYc--~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------------ep~ 82 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYC--TKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------------EPL 82 (1088)
T ss_pred HhcCCCchhhHHHHHHHHc--ccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC------------CCc
Confidence 4599999999999999999 999999999 887665 223334555555555555444333 244
Q ss_pred cccHHHHHHHHHccCChhh---HHHHHHHHHH----hcC-----------------CCChh----------HHHHHHHHH
Q 007818 79 NFTYPLLFKVCASLGLRFL---GYEIFGHVLK----LGF-----------------DVDMY----------VHNAVIHVF 124 (588)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~-----------------~~~~~----------~~~~l~~~~ 124 (588)
+.||..+..+|...||+.. +++.++.+.. .|+ -||.. .+..++..+
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554332 2221111111 111 01100 000111111
Q ss_pred ---------------Hh-----CCChhHHHHHhccCCC-CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchH
Q 007818 125 ---------------VS-----CGDLGLACNVFDESCV-RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTM 183 (588)
Q Consensus 125 ---------------~~-----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 183 (588)
.+ ...+++-..+...... ++..+|..++..-..+|+.+.|..++.+|++.|++.+..-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 11 1112222222222333 78889999999999999999999999999999999999888
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHH------------------------HHHHH
Q 007818 184 IGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESA------------------------EEIFD 239 (588)
Q Consensus 184 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A------------------------~~~~~ 239 (588)
..++-+ .++...+..++.-|...|+.|+..|+...+..+.+.|....+ .+.++
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 888766 788888999999999999999999887766665553322111 11110
Q ss_pred hc---------CC-------CCcch-------------------------------------HHHHHHHHHh--------
Q 007818 240 SM---------VN-------KTVVS-------------------------------------CTTMIVGYAK-------- 258 (588)
Q Consensus 240 ~~---------~~-------~~~~~-------------------------------------~~~ll~~~~~-------- 258 (588)
.- ++ ....+ +..++.-|.+
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~ 399 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICS 399 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHH
Confidence 00 00 00011 1111111100
Q ss_pred --------------cCCHHHHHHHhhhCCCC-------------------------------------------------
Q 007818 259 --------------FGFLDIARKIFDDLPEK------------------------------------------------- 275 (588)
Q Consensus 259 --------------~~~~~~a~~~~~~~~~~------------------------------------------------- 275 (588)
.....+..++.....+.
T Consensus 400 ~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l 479 (1088)
T KOG4318|consen 400 RIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKIL 479 (1088)
T ss_pred HHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111111111000
Q ss_pred --------Cc--ccHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCC
Q 007818 276 --------YV--VPWNAIIGGYVQAKRSKEALALFHEMQATG--IKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343 (588)
Q Consensus 276 --------~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 343 (588)
.. -.|..||+-+......+.|..+..+..... +..|..-+..+.....+.+....+..++..+.+.-.
T Consensus 480 ~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~ 559 (1088)
T KOG4318|consen 480 CDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAE 559 (1088)
T ss_pred HHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhh
Confidence 00 005667777777788888888888775432 344566677888888888888888888888876432
Q ss_pred C-Cc-chHHHHHHHHhHhcCChhHHHHHhccCCC-------C---------Ccc-hHHHHHHHHHhcCChHHHHHHHHHH
Q 007818 344 N-LN-VVLGTALVDMYAKCGNIAKALQVFHEMPE-------R---------NSL-TYTAIIGGLALHGKALDAISYFSEM 404 (588)
Q Consensus 344 ~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~---------~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 404 (588)
. |+ ..++-.++......|+.+...++++-+.. | +.. ....-...+.+.+-+..+.+.+-++
T Consensus 560 n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrl 639 (1088)
T KOG4318|consen 560 NEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRL 639 (1088)
T ss_pred CCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHH
Confidence 2 21 22233445555666776666665554321 1 000 1111112222333333444444444
Q ss_pred HHCCCCCCHHH---HHHHHHHhccCCchHHHHHHHHHhh-----------hhcCCCC---------ChHHHHHHHHHHHh
Q 007818 405 IGVGLMPDEIT---FLGILSACCHGGLVDEGRKYFAQMS-----------SIFRLSP---------KLKHYSCMVDLLGR 461 (588)
Q Consensus 405 ~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~---------~~~~~~~l~~~~~~ 461 (588)
...+-.-+... +..=+..|.+.|+..+|..+.+.=- ....+.| +......|+..|.+
T Consensus 640 v~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~ 719 (1088)
T KOG4318|consen 640 VYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLE 719 (1088)
T ss_pred HHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHh
Confidence 44322222221 1111223555565555554443210 0000000 01112237778999
Q ss_pred cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhC---CHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHccCChHHHH
Q 007818 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHG---NVSIGERAAMKLLELDPQDSG---IYVLLANMYRDSNMWEEAG 535 (588)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 535 (588)
.|+++.|..+|.+++..|...+...++..+.+.. +..++...-+++.+..|..+. .+.-.+....+....+.|.
T Consensus 720 ~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAk 799 (1088)
T KOG4318|consen 720 EGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAK 799 (1088)
T ss_pred hhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHH
Confidence 9999999999999987788888877777776544 556666666777666654333 3444455555666666888
Q ss_pred HHHHHHHhcCCccC
Q 007818 536 KVRKMMEERGVEKT 549 (588)
Q Consensus 536 ~~~~~~~~~~~~~~ 549 (588)
+.+.+..+.....+
T Consensus 800 k~f~r~eeq~~v~t 813 (1088)
T KOG4318|consen 800 KCFERLEEQLTVST 813 (1088)
T ss_pred HHHHHHHHccCCCc
Confidence 99999887755443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-12 Score=118.47 Aligned_cols=330 Identities=13% Similarity=0.065 Sum_probs=250.6
Q ss_pred CCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC-cccHHHHHHHHH
Q 007818 210 GLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY-VVPWNAIIGGYV 288 (588)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~ 288 (588)
+...|...+......+.+.|..+.|.+.|......-+..|.+.+....-.-+.+.+..+...+...+ ...--.+..++.
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~ 238 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ 238 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence 4444655555566667788999999999999888777777777665554555555444443333221 111122345566
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCC--CcchHHHHHHHHhHhcCChhH-
Q 007818 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN--LNVVLGTALVDMYAKCGNIAK- 365 (588)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~- 365 (588)
.....+++..-.......|++.+...-+....+.....++++|+.+|+.+.+..+- -|..+|..++-.--...++.-
T Consensus 239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 66688888888888888887766666666666677889999999999999988432 245666666533322222221
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCC
Q 007818 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445 (588)
Q Consensus 366 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (588)
|..+ -.+.+--+.|.-++.+-|.-.++.++|...|++..+.+ +.....|+.+..-|....+...|++-++.+.+ --
T Consensus 319 A~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~ 394 (559)
T KOG1155|consen 319 AQNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--IN 394 (559)
T ss_pred HHHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cC
Confidence 2222 22233356677778888999999999999999999864 33455788888899999999999999999997 44
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
|-|-..|..|+++|.-.+.+.=|+-+|+++ ..+| |...|..++..|.+.++.++|++.|.+++..+--+..++..|+.
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 667899999999999999999999999988 4555 88999999999999999999999999999988878899999999
Q ss_pred HHHccCChHHHHHHHHHHHh
Q 007818 524 MYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 524 ~~~~~g~~~~A~~~~~~~~~ 543 (588)
+|.+.++.++|..++++..+
T Consensus 475 Lye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999998865
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.1e-13 Score=121.26 Aligned_cols=430 Identities=13% Similarity=0.060 Sum_probs=271.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHhccCCCC----Cc-ccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc--c----hHH
Q 007818 116 VHNAVIHVFVSCGDLGLACNVFDESCVR----NL-VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE--V----TMI 184 (588)
Q Consensus 116 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~----~~~ 184 (588)
+...|..-|..+..+.+|+..++-+.+. |. ..--.+...+.+.+.+.+|++.|+..... .|+. . ..+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~ 280 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHh
Confidence 3444455566666677777766654321 11 11122344566777888888888766553 2322 2 233
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC--------------C--cch
Q 007818 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK--------------T--VVS 248 (588)
Q Consensus 185 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------~--~~~ 248 (588)
.+.-.+.+.|.++.|...|+...+. .|+..+-..|+-++..-|+.++..+.|.+|..- | ...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 3334567788888888888887776 456555555666677778888888888777320 1 111
Q ss_pred HHH-----HHHHHHhcC--CHHHHHHHhhhCC----CCCccc---HH------------------HHHHHHHhcCChHHH
Q 007818 249 CTT-----MIVGYAKFG--FLDIARKIFDDLP----EKYVVP---WN------------------AIIGGYVQAKRSKEA 296 (588)
Q Consensus 249 ~~~-----ll~~~~~~~--~~~~a~~~~~~~~----~~~~~~---~~------------------~l~~~~~~~~~~~~a 296 (588)
.+. .+.-.-+.+ +.++++-.--.+. .++... |. .-..-+.++|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 111 111121111 1222222211222 222111 11 112347789999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH--cccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC
Q 007818 297 LALFHEMQATGIKPDAVTTVHCLSAC--SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 297 ~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 374 (588)
+++++-+.+..-+.-...-+.+-..+ ....++..|.++-+...... .-+....+.-.......|++++|.+.|++..
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 99999887764333332233222222 22345666666665554332 1122222222334456799999999999999
Q ss_pred CCCcchHHHHHH---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHH
Q 007818 375 ERNSLTYTAIIG---GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451 (588)
Q Consensus 375 ~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 451 (588)
..|..+-.+|.. .+...|+.++|+..|-.+..- +..+......+...|....+..+|++++-.... -++.|+.+
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAI 594 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHH
Confidence 887766555544 467789999999999887653 345667888888999999999999999988876 66778999
Q ss_pred HHHHHHHHHhcCChHHHHHHH-HhCCCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLI-RSMPMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~-~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
...|.+.|-+.|+..+|.+.. +....-| +..+..-+...|....-.++|+.+|+++.-..|+....-..++.++.+.|
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 999999999999999999875 4444223 55555555556667777899999999999999954444444566677899
Q ss_pred ChHHHHHHHHHHHhcCCccCCceeE
Q 007818 530 MWEEAGKVRKMMEERGVEKTPGCSS 554 (588)
Q Consensus 530 ~~~~A~~~~~~~~~~~~~~~~~~~~ 554 (588)
+|++|.++++....+ .+.+..|..
T Consensus 675 nyqka~d~yk~~hrk-fpedldclk 698 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK-FPEDLDCLK 698 (840)
T ss_pred cHHHHHHHHHHHHHh-CccchHHHH
Confidence 999999999999765 444544443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-11 Score=111.09 Aligned_cols=446 Identities=12% Similarity=0.051 Sum_probs=319.6
Q ss_pred HHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChh
Q 007818 86 FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC---VRNLVSWNSLINGFVRSGFPR 162 (588)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 162 (588)
.+.=...+++..|.++|++++... ..+...|...+.+-.++..+..|..++++.. +.-...|...+..--..|++.
T Consensus 80 aqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ 158 (677)
T KOG1915|consen 80 AQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIA 158 (677)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccH
Confidence 333446778899999999999865 4677788888888889999999999999832 223335655666666789999
Q ss_pred HHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcC
Q 007818 163 EAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242 (588)
Q Consensus 163 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 242 (588)
.|.++|++-.+- .|+...|.+.++.-.+-+.++.|..+++..+-. .|+...|-..++.-.++|+...|..+|....
T Consensus 159 gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 999999998765 899999999999999999999999999988764 5889999999999999999999999998875
Q ss_pred CC------CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcc-----cHHHHHHHHHhcCChH---HHHHH-----HHHH
Q 007818 243 NK------TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV-----PWNAIIGGYVQAKRSK---EALAL-----FHEM 303 (588)
Q Consensus 243 ~~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~---~a~~~-----~~~~ 303 (588)
+. +...+.+...--.++..++.|.-+|+-..+.-+. .|..+...--+-|+.. +++-- |+.+
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~ 314 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKE 314 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHH
Confidence 42 2234444444445677788888887765442211 1333333333445443 33321 3334
Q ss_pred HHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc-hHHHHHHH--------HhHhcCChhHHHHHhccCC
Q 007818 304 QATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV-VLGTALVD--------MYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 304 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~--------~~~~~~~~~~A~~~~~~~~ 374 (588)
+..+ +-|-.++--.+..-...|+.+...++++.....-++... ..+...|. .-....+.+.+.++|+...
T Consensus 315 v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 315 VSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred HHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4432 446667777777777789999999999888765322211 11222221 1235678888888887655
Q ss_pred C---CCcchH----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCC
Q 007818 375 E---RNSLTY----TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447 (588)
Q Consensus 375 ~---~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 447 (588)
+ ....|| ..-..-..++.+...|.+++...+ |.-|-..+|...|..-.+.+.++.+..++++..+ --|.
T Consensus 394 ~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe 469 (677)
T KOG1915|consen 394 DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPE 469 (677)
T ss_pred hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChH
Confidence 3 233343 333444557888999999988766 4588888999989888889999999999999986 3345
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
+..+|...+..-...|+.+.|..+|+-+..+|. ...|...+.--...|.+++|..+++++++..+. ..+|...+.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h-~kvWisFA~ 548 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH-VKVWISFAK 548 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc-chHHHhHHH
Confidence 677888888888889999999999998766664 334555555556789999999999999998884 447777666
Q ss_pred HHH-----ccC-----------ChHHHHHHHHHHH
Q 007818 524 MYR-----DSN-----------MWEEAGKVRKMME 542 (588)
Q Consensus 524 ~~~-----~~g-----------~~~~A~~~~~~~~ 542 (588)
.-. +.| ....|..+|+++.
T Consensus 549 fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 549 FEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 544 344 5677888888774
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-11 Score=113.77 Aligned_cols=482 Identities=11% Similarity=-0.035 Sum_probs=274.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHH
Q 007818 41 PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120 (588)
Q Consensus 41 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (588)
.+..-+..+++-+..+.++..|.-+-+++.. +.-|+....-+.+++.-.|+.+.|..++..-.-. ..|.......
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~---l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~ 88 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAG---LTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA 88 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence 3455567777777778888888888888765 3344444555788888888888888777665433 2566667777
Q ss_pred HHHHHhCCChhHHHHHhccCCC-CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHH
Q 007818 121 IHVFVSCGDLGLACNVFDESCV-RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199 (588)
Q Consensus 121 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 199 (588)
..++.+..+++.|..++..... .+...|..--. ...-..+.+. ++.. +......+-.-...|....+.++|
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHH
Confidence 7778888888888888874311 01111110000 0000001111 0000 000111111111223334455555
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhc-CChhHHHHHHHhcC-----CCCcchHHHHHHHHHhcCCHHHHHHHh--hh
Q 007818 200 REIHWYISESGLTLTVPLANALMDMYVKC-GKLESAEEIFDSMV-----NKTVVSCTTMIVGYAKFGFLDIARKIF--DD 271 (588)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~--~~ 271 (588)
...|.+.... |...+..+...-... -..++-..+|..+. ..+......+.........-+.....- ..
T Consensus 161 r~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s 236 (611)
T KOG1173|consen 161 RDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES 236 (611)
T ss_pred HHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence 5555554443 222222221111100 00111122222110 001100000000000000000000000 00
Q ss_pred C--CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchH
Q 007818 272 L--PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL 349 (588)
Q Consensus 272 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 349 (588)
+ .+.++........-+...+++.+..++.+...+.. ++....+..-|.++...|+...-..+=..+.+.- +....+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~s 314 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALS 314 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcc
Confidence 0 01122223334445566777888888888877753 4555555555556666666655555555555542 335566
Q ss_pred HHHHHHHhHhcCChhHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 007818 350 GTALVDMYAKCGNIAKALQVFHEMPERN---SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426 (588)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 426 (588)
|-++.--|...|+..+|.+.|.+...-| ...|.....+|+-.|..++|+..+...-+. ++-....+..+.--|.+.
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t 393 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRT 393 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHh
Confidence 7777777878888888888887766433 357888888888888888888888776654 222333344455557778
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-CHhHHHHHHHHHHhhCCH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--------MAA-DVVVWGALFFACRLHGNV 497 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~~~~ 497 (588)
++.+.|.++|..+.. -.|.|+...+.+.-.....+.+.+|..+|+... .++ -.++++.++.+|++.+.+
T Consensus 394 ~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred ccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 888888888888875 334456777777777777788888888887652 112 345677888888888888
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
++|+..+++++.+.|.++.++..++.+|...|+++.|.+.|.+....
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 88888888888888888888888888888888888888888877543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-12 Score=125.66 Aligned_cols=247 Identities=10% Similarity=0.000 Sum_probs=157.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChh
Q 007818 287 YVQAKRSKEALALFHEMQATGIKPDAVTTV--HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364 (588)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 364 (588)
..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...++.+.+..+ -++.....+...|.+.|+++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHH
Confidence 35566666677766666653 34433222 224455666677777777766666542 24555666667777777777
Q ss_pred HHHHHhccCCCCCc-----------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHH
Q 007818 365 KALQVFHEMPERNS-----------LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433 (588)
Q Consensus 365 ~A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 433 (588)
+|.+++..+.+... .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 77766666653211 12333333333444555566666665433 2456667777788888888888888
Q ss_pred HHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
+++++..+. +|+.... ++.+....++.+++.+..++.. ..| |+.....+...|...+++++|...|+++++..
T Consensus 284 ~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 284 QIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888877753 4444322 2233335578888888887763 335 45556677777888888888888888888888
Q ss_pred CCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
|+ ...+..++.++.+.|+.++|.+++++...
T Consensus 359 P~-~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 359 PD-AYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 85 45566788888888888888888887754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.7e-12 Score=121.15 Aligned_cols=248 Identities=13% Similarity=-0.039 Sum_probs=174.2
Q ss_pred HhcCCHHHHHHHhhhCCCCCccc--H--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHH
Q 007818 257 AKFGFLDIARKIFDDLPEKYVVP--W--NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGI 332 (588)
Q Consensus 257 ~~~~~~~~a~~~~~~~~~~~~~~--~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 332 (588)
.+.|+++.|...+.++.+.++.. . ......+...|+++.|...++.+.+.. +-+...+..+...+.+.|+++.+.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 44444444544444443322222 1 122445666677777777777776653 224455556666677777777777
Q ss_pred HHHHHHHHhCCCCcc-------hHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHH
Q 007818 333 WIHRFIEKENFNLNV-------VLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFS 402 (588)
Q Consensus 333 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 402 (588)
.++..+.+.+..++. ..|..++.......+.+...++++.+++ .++.....+...+...|+.++|.++++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777666543222 1223334334445566777778887763 477788889999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 007818 403 EMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADV 481 (588)
Q Consensus 403 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~ 481 (588)
+..+. .|++... ++.+....++.+++.+..+...+ ..+-|+..+..+...+.+.|++++|.+.|+.. ...|+.
T Consensus 288 ~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 288 DGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 98884 5565322 23344466999999999999987 55666778889999999999999999999987 467999
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
..+..+...+...|+.++|..++++.+.+.
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 998899999999999999999999998754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-09 Score=103.57 Aligned_cols=481 Identities=13% Similarity=0.104 Sum_probs=274.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 007818 45 SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVF 124 (588)
Q Consensus 45 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (588)
.|-..++.+.++|+.......|+..+....+.....+|...+.-....+-++-+..++++.++. ++..-+..+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence 3444445555555555555555555543333333445555555555555555555555555542 222244445555
Q ss_pred HhCCChhHHHHHhcc--------------------------------------------CCC----CCcccHHHHHHHHH
Q 007818 125 VSCGDLGLACNVFDE--------------------------------------------SCV----RNLVSWNSLINGFV 156 (588)
Q Consensus 125 ~~~~~~~~A~~~~~~--------------------------------------------~~~----~~~~~~~~l~~~~~ 156 (588)
+..+++++|.+.+.. +.. .-...|.+|...|.
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI 259 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI 259 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence 555555555544432 111 11235888888888
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCC----------------------hhHHHHHHHHHHHhCC---
Q 007818 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLED----------------------LNLGREIHWYISESGL--- 211 (588)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~~~--- 211 (588)
+.|.+++|.++|++.... ..+..-|..+..+|+.... ++-...-++.+...+.
T Consensus 260 r~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 260 RSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 899999999888887664 3344455555555543211 1122222333222210
Q ss_pred --------CCChhhHHHHHHHHHhcCChhHHHHHHHhcCC---C------CcchHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 007818 212 --------TLTVPLANALMDMYVKCGKLESAEEIFDSMVN---K------TVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274 (588)
Q Consensus 212 --------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 274 (588)
+.+...|..- .-...|+..+-...+.+..+ | -...|..+...|-..|+.+.|..+|+...+
T Consensus 338 NsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 1111112111 11224555555556655522 1 124577888888999999999999998877
Q ss_pred CCccc-------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-----------CH------HHHHHHHHHHcccCChhH
Q 007818 275 KYVVP-------WNAIIGGYVQAKRSKEALALFHEMQATGIKP-----------DA------VTTVHCLSACSQLGALDD 330 (588)
Q Consensus 275 ~~~~~-------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-----------~~------~~~~~l~~~~~~~~~~~~ 330 (588)
-+..+ |..-...-.++.+++.|+++.+......-.| .. ..|...+..-...|-++.
T Consensus 416 V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes 495 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES 495 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH
Confidence 55444 4444455556778888888887765421111 11 123333333345566777
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC----CCc-chHHHHHHHHHh---cCChHHHHHHHH
Q 007818 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE----RNS-LTYTAIIGGLAL---HGKALDAISYFS 402 (588)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~a~~~~~ 402 (588)
...+++.+.+..+.. +.+.-.....+-...-++++.++|++-.. |++ ..|+.-+..+.+ ....+.|..+|+
T Consensus 496 tk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFE 574 (835)
T KOG2047|consen 496 TKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFE 574 (835)
T ss_pred HHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 778888887776542 33222333344556678899999988663 333 356665555543 345899999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH--hccCCchHHHHHHHHHhhhhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 007818 403 EMIGVGLMPDEITFLGILSA--CCHGGLVDEGRKYFAQMSSIFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSMP-M 477 (588)
Q Consensus 403 ~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 477 (588)
+.++ |++|...-+..++.+ -.+-|-...|..+++++.. ++++. ...|+..|.--...=-.....++|+++. .
T Consensus 575 qaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 575 QALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 9998 677766533333322 3356888889999999876 55554 4567766654333222333445555442 1
Q ss_pred CCCHhHH---HHHHHHHHhhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHccCChHHHHHH
Q 007818 478 AADVVVW---GALFFACRLHGNVSIGERAAMKLLELDPQ--DSGIYVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 478 ~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~ 537 (588)
=|+...- ......-.+.|..++|..++...-++-|+ ++..|..+-..-.+.|+-+--.++
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 2443332 22333345788999999999888876654 677788888888889985544444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.8e-12 Score=122.28 Aligned_cols=292 Identities=13% Similarity=0.037 Sum_probs=173.4
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcch-HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHH
Q 007818 157 RSGFPREAIRLFRDMQLERVEPDEVT-MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAE 235 (588)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 235 (588)
..|+++.|.+.+.+..+. .|+... +-....+....|+.+.+.+.+....+....+...+.......+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457777777777665543 343332 23334555566777777777766655432222223333455556666666666
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 007818 236 EIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315 (588)
Q Consensus 236 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 315 (588)
..++.+.+.++ .++..+..+...+...|+++.|.+.+..+.+.++.+ ...+
T Consensus 174 ~~l~~l~~~~P----------------------------~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~ 224 (409)
T TIGR00540 174 HGVDKLLEMAP----------------------------RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEF 224 (409)
T ss_pred HHHHHHHHhCC----------------------------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHH
Confidence 66555533221 122224445555666666666666666666654322 1111
Q ss_pred HHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcC
Q 007818 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHG 392 (588)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 392 (588)
..+-. ..+..++..-......+...+.++..++ .++..+..++..+...|
T Consensus 225 ~~l~~---------------------------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 225 ADLEQ---------------------------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred HHHHH---------------------------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 11000 0001111111112223444555555553 36677777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHhccCCchHHHHHHHHHhhhhcCCCCCh--HHHHHHHHHHHhcCChHH
Q 007818 393 KALDAISYFSEMIGVGLMPDEIT--F-LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL--KHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 467 (588)
+.++|.+++++..+. .|+... + ..........++.+.+.+.++...+. .+.++ ....++...+.+.|++++
T Consensus 278 ~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~ 353 (409)
T TIGR00540 278 DHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIE 353 (409)
T ss_pred ChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHH
Confidence 888888888888875 344432 1 11222233457788888888888763 34445 667788899999999999
Q ss_pred HHHHHHh---CCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 007818 468 AEQLIRS---MPMAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510 (588)
Q Consensus 468 A~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (588)
|.+.|+. ....|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 354 A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 354 AADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999994 245788888888888899999999999999988653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-11 Score=105.40 Aligned_cols=209 Identities=15% Similarity=0.110 Sum_probs=139.4
Q ss_pred ChhHHHHHhccCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 007818 362 NIAKALQVFHEMPE-----RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436 (588)
Q Consensus 362 ~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (588)
...-|.+.|+-.-+ ..+..-.++.+.+.-..++++++-.+.....-- ..|...-..+.++.+..|.+.+|+++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHH
Confidence 34455555554432 123344566677777778888888888777653 334444445778888999999999999
Q ss_pred HHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHH-HHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA-CRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
-.+... .++.+..--..|.++|.++|.++-|.+++-.+..+.+..++..++.. |.+.+++--|.+.|..+..++| +|
T Consensus 417 ~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~p 494 (557)
T KOG3785|consen 417 IRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TP 494 (557)
T ss_pred hhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-Cc
Confidence 888653 33333333446778999999999999999888655566666665554 8899999999999999988998 45
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHHHHhh
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTRH 587 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (588)
..|. |+...-..+|..+......|-|.....++.+ +.++..|.+++....++..|.++
T Consensus 495 EnWe---------GKRGACaG~f~~l~~~~~~~~p~~~~rEVvh-----llr~~~nsq~E~mikvvrkwa~~ 552 (557)
T KOG3785|consen 495 ENWE---------GKRGACAGLFRQLANHKTDPIPISQMREVVH-----LLRMKPNSQCEFMIKVVRKWAET 552 (557)
T ss_pred cccC---------CccchHHHHHHHHHcCCCCCCchhHHHHHHH-----HHHhCCCchHHHHHHHHHHHHHh
Confidence 5553 3444445566666554444444333222222 34455677888888888887765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=124.78 Aligned_cols=195 Identities=14% Similarity=0.089 Sum_probs=117.6
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERN---SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE-ITFLGILSA 422 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~ 422 (588)
+.+|.++..+|.-+++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+..+.. .|.. ..|-.+...
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPRHYNAWYGLGTV 498 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--CchhhHHHHhhhhh
Confidence 3444455555555555555555555544322 234444444455555566666666555432 2222 245555566
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSI 499 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 499 (588)
|.++++++.|+-.|+++.+ +.|. ......+...+.+.|+.++|+++++++. .+| ++..--.-+..+...+++++
T Consensus 499 y~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred eeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence 6677777777777777664 2333 4445556666667777777777777662 333 44444445555666777777
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 500 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
|.+.++++.++-|++..++..++.+|.+.|+.+.|+.-|.-+.+.+.
T Consensus 576 al~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 576 ALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 88888888888888777888888888888888888777777665543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=124.59 Aligned_cols=249 Identities=13% Similarity=0.050 Sum_probs=191.1
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCC--CCcchHHHHHHHHhHhcCChhHHHH
Q 007818 291 KRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF--NLNVVLGTALVDMYAKCGNIAKALQ 368 (588)
Q Consensus 291 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 368 (588)
-+..+|+..|...... +.-+.+....+..+|...++++++.++|+.+.+... .-+..+|.+.+--+-+.=.+.---+
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567888888885554 344556677788899999999999999998877642 2255667776654432211211112
Q ss_pred HhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCC
Q 007818 369 VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP 447 (588)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 447 (588)
-+-...+..+.+|-++...|..+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|+..... .+-
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~r 487 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DPR 487 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cch
Confidence 222233457889999999999999999999999999884 55 5678888888888899999999999998852 122
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
+-..|..++..|.++++++.|+-.|+++ .+.|. ......+...+.+.|+.++|++++++++.++|.|+-.-...+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 3455667888899999999999999887 45664 555566666788899999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHhc
Q 007818 526 RDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 526 ~~~g~~~~A~~~~~~~~~~ 544 (588)
...+++++|+..++++.+-
T Consensus 568 ~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKEL 586 (638)
T ss_pred HhhcchHHHHHHHHHHHHh
Confidence 9999999999999999764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.7e-11 Score=107.25 Aligned_cols=356 Identities=12% Similarity=0.065 Sum_probs=185.8
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHH--HHHHH
Q 007818 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI--GMVSA 189 (588)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~ 189 (588)
.|...+-..-..+.+.|....|+..|.+....-+..|.+.+....-..+.+.+ ..... |.+.|...+. .+..+
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~~-~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILVV-GLPSDMHWMKKFFLKKA 236 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHHh-cCcccchHHHHHHHHHH
Confidence 34333333334455567777888877775443333343333322222222222 22221 2222222222 23345
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCc------chHHHHHHHHHhcCCHH
Q 007818 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTV------VSCTTMIVGYAKFGFLD 263 (588)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~ 263 (588)
+......+++.+-.+...+.|++.+...-+....+.-...++++|+.+|+++.+.|+ .+|+..+-.-.......
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 556667888888888888888888877777777778888899999999999877654 34444433222211111
Q ss_pred HHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCC
Q 007818 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343 (588)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 343 (588)
---...-.+.+-.+.|...+..-|+-.++.++|...|+...+ .+.
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk-----------------------------------LNp 361 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK-----------------------------------LNP 361 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh-----------------------------------cCc
Confidence 111111122222333444444444444555555555555444 331
Q ss_pred CCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
. ....|+.+.+-|...++...|.+-|+...+ .|-..|-.|.++|...+.+.=|+-.|++..+.. +-|+..|..+.
T Consensus 362 ~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG 439 (559)
T KOG1155|consen 362 K-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALG 439 (559)
T ss_pred c-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence 1 334455555556666666666666655543 344555566666666666666666666665542 33445666666
Q ss_pred HHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCC-HhHHHHHHHHH
Q 007818 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--------MAAD-VVVWGALFFAC 491 (588)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~ 491 (588)
.+|.+.++.++|+..|.+.... -..+...+..|++.|-+.++..+|...|++.. ..|. .....-+..-+
T Consensus 440 ~CY~kl~~~~eAiKCykrai~~--~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f 517 (559)
T KOG1155|consen 440 ECYEKLNRLEEAIKCYKRAILL--GDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYF 517 (559)
T ss_pred HHHHHhccHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH
Confidence 6666666666666666666552 22244555666666666666666666555431 1121 11112233334
Q ss_pred HhhCCHHHHHHHHHHHhccC
Q 007818 492 RLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~ 511 (588)
.+.+++++|.....+...-+
T Consensus 518 ~k~~~~~~As~Ya~~~~~~~ 537 (559)
T KOG1155|consen 518 KKMKDFDEASYYATLVLKGE 537 (559)
T ss_pred HhhcchHHHHHHHHHHhcCC
Confidence 55666666666555555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.2e-11 Score=118.70 Aligned_cols=253 Identities=11% Similarity=-0.031 Sum_probs=158.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCC
Q 007818 285 GGYVQAKRSKEALALFHEMQATGIKPDAV--TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN 362 (588)
Q Consensus 285 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 362 (588)
......|+.+.|.+.+.+..+. .|+.. .-......+...|+++.|...++.+.+..+ -++.+...+...+...|+
T Consensus 126 ~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 126 EAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhh
Confidence 3444555666666666555443 23321 222234455556666666666666655542 234455566666666666
Q ss_pred hhHHHHHhccCCCC---CcchHH----HHHHHHHhcCChHHHHHHHHHHHHCCC---CCCHHHHHHHHHHhccCCchHHH
Q 007818 363 IAKALQVFHEMPER---NSLTYT----AIIGGLALHGKALDAISYFSEMIGVGL---MPDEITFLGILSACCHGGLVDEG 432 (588)
Q Consensus 363 ~~~A~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a 432 (588)
+++|.+.+..+.+. +...+. .........+..+++...+..+.+... +.+...+..+...+...|+.++|
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 66666666655532 222221 111111222333333445555544321 23778888899999999999999
Q ss_pred HHHHHHhhhhcCCCCChHH--HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-H--hHHHHHHHHHHhhCCHHHHHHHHH-
Q 007818 433 RKYFAQMSSIFRLSPKLKH--YSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-V--VVWGALFFACRLHGNVSIGERAAM- 505 (588)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~--~~~~~l~~~~~~~~~~~~A~~~~~- 505 (588)
.+++++..+. .+++... .....-.....++.+.+.+.+++. ...|+ + ....++...+.+.|++++|.+.++
T Consensus 283 ~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 283 QEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 9999999984 2233221 111122223457888888888876 34454 3 566788889999999999999999
Q ss_pred -HHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 506 -KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 506 -~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+++..|+ +..+.+++.++.+.|+.++|.+++++...
T Consensus 361 a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 361 VAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57778885 55577999999999999999999998754
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-10 Score=104.99 Aligned_cols=412 Identities=13% Similarity=0.005 Sum_probs=254.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC-cccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCC-hhHHHHHHHH
Q 007818 46 WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD-NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVD-MYVHNAVIHV 123 (588)
Q Consensus 46 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 123 (588)
+-...+-|.++|++++|++.|.+.+. ..|+ +..|.....+|...|+++++.+.-...++.. |+ +..+.....+
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASA 192 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHH
Confidence 44556778999999999999999988 7788 7788899999999999999999888888744 54 3466666777
Q ss_pred HHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHH--------HHhHH-CC--CCCCcchHHHHHHHHhc
Q 007818 124 FVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF--------RDMQL-ER--VEPDEVTMIGMVSACAQ 192 (588)
Q Consensus 124 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--------~~m~~-~~--~~p~~~~~~~ll~~~~~ 192 (588)
+-..|++++|+.=+ +-..++.++....-..-+.+++ ++-.. .+ +-|+.....+....+..
T Consensus 193 ~E~lg~~~eal~D~---------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~ 263 (606)
T KOG0547|consen 193 HEQLGKFDEALFDV---------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHA 263 (606)
T ss_pred HHhhccHHHHHHhh---------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccc
Confidence 77888888876322 1122222222222112222222 22111 11 22333322222222211
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHh--c---CChhHHHHHHHhcCC-----C-----CcchHHHHHHHHH
Q 007818 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVK--C---GKLESAEEIFDSMVN-----K-----TVVSCTTMIVGYA 257 (588)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~-----~-----~~~~~~~ll~~~~ 257 (588)
.- ......+.......+..++.. . ..+..|...+.+-.. . |... ..+..+
T Consensus 264 ~~------------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~a-- 328 (606)
T KOG0547|consen 264 DP------------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEA-- 328 (606)
T ss_pred cc------------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHH--
Confidence 00 000000011111111111110 0 122233222221100 0 0000 001111
Q ss_pred hcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHH
Q 007818 258 KFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337 (588)
Q Consensus 258 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 337 (588)
.......+.-.|+...|..-|+..+.....++. .|..+...|....+.++..+.|..
T Consensus 329 ----------------------l~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~ 385 (606)
T KOG0547|consen 329 ----------------------LLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNK 385 (606)
T ss_pred ----------------------HHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHH
Confidence 111112234567788888888888876433322 277777788888888888888888
Q ss_pred HHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007818 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI 414 (588)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 414 (588)
..+.+. .++.+|..-.+++.-.+++++|..=|++...- +...|-.+.-+..+.+++++++..|++.++. ++.-+.
T Consensus 386 A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~E 463 (606)
T KOG0547|consen 386 AEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPE 463 (606)
T ss_pred HHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCch
Confidence 888763 36667777777777788999999999887753 4456666666677888999999999999886 455667
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCC------CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRL------SPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGA 486 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~ 486 (588)
.|+.....+..++++++|.+.|+...+.... .+.+.+...++-.- -.+++..|.+++++. ...|. ...+..
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~t 542 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYET 542 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHH
Confidence 8999999999999999999999998764111 11122222232222 338999999999887 45663 557888
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
+...-.++|+.++|+++|++...+..
T Consensus 543 laq~~lQ~~~i~eAielFEksa~lAr 568 (606)
T KOG0547|consen 543 LAQFELQRGKIDEAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 88888899999999999999877654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-11 Score=103.69 Aligned_cols=279 Identities=16% Similarity=0.145 Sum_probs=174.8
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCC-CCC--hhhHHHHHHHHHhcCChhHH
Q 007818 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL-TLT--VPLANALMDMYVKCGKLESA 234 (588)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~A 234 (588)
.+++++|.++|-+|.+.. +-+..+-.+|.+.|.+.|..+.|..+.+.+.++.- +.+ ......|.+-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 457788888888887642 22333445677778888888888888887776521 111 12345677778888888888
Q ss_pred HHHHHhcCCCCc---chHHHHHHHHHhcCCHHHHHHHhhhCCCCCccc--------HHHHHHHHHhcCChHHHHHHHHHH
Q 007818 235 EEIFDSMVNKTV---VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP--------WNAIIGGYVQAKRSKEALALFHEM 303 (588)
Q Consensus 235 ~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~ 303 (588)
+.+|..+.+.+. .....++..|-...+|++|+++-+++.+.+..+ |.-+...+....+.+.|..++++.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 888888877433 345566777777777777777766655544433 444555555667777777777777
Q ss_pred HHCCCCCCHHH-HHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--CCcch
Q 007818 304 QATGIKPDAVT-TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLT 380 (588)
Q Consensus 304 ~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~ 380 (588)
.+.+ |+.+- -..+.......|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++....+..+.+ ++...
T Consensus 207 lqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 207 LQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 6653 33322 2234455667777777777777777776555566667777777777777777777766653 34445
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc---CCchHHHHHHHHHhhh
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH---GGLVDEGRKYFAQMSS 441 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 441 (588)
-..+...-....-.+.|...+.+-... +|+...+..++..... .|...+..-.++.|..
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 555555544444555555555444443 6677666666665442 2334444455555543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.2e-14 Score=128.59 Aligned_cols=226 Identities=15% Similarity=0.155 Sum_probs=104.3
Q ss_pred HHHHHHcccCChhHHHHHHHHHHHhC-CCCcchHHHHHHHHhHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcC
Q 007818 317 HCLSACSQLGALDDGIWIHRFIEKEN-FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHG 392 (588)
Q Consensus 317 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~ 392 (588)
.+...+.+.|++++|.++++...... .+.+...+..+.......++++.|.+.++++... ++..+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 55777889999999999996654443 3446666777788888899999999999999853 34567777776 7899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 007818 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472 (588)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 472 (588)
++++|.++++...+. .+++..+..++..+...++++++..+++.+......+++...|..++..+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999887664 466777888888999999999999999998765345677888999999999999999999999
Q ss_pred HhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 473 RSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 473 ~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+++ ...| +......++..+...|+.+++..+++...+..|.++..+..++.+|...|++++|+.++++..+..
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 987 4556 477788899999999999999999999999989999999999999999999999999999998754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-10 Score=112.28 Aligned_cols=267 Identities=12% Similarity=0.017 Sum_probs=155.1
Q ss_pred HHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCC
Q 007818 65 LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN 144 (588)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 144 (588)
++-.+.. .|+.|+..||..+|.-|+..|+++.|- +|..|.-...+.+..+++.++......++.+.+. .|.
T Consensus 12 fla~~e~-~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHEI-SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHH-hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 4455555 789999999999999999999999888 8998888888888889999998888888877665 678
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH-hCCCCChhhHHHHHH
Q 007818 145 LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE-SGLTLTVPLANALMD 223 (588)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 223 (588)
..+|+.|..+|...||... ++..++ ....+...+...|.......++..+.- -+.-||. ...+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHH
Confidence 8899999999999998765 222222 111222233333333332222222110 1112222 22333
Q ss_pred HHHhcCChhHHHHHHHhcCCC--CcchHHHHHHHHHhcC-CHHHHHHHhhhCCC-CCcccHHHHHHHHHhcCChHHHHHH
Q 007818 224 MYVKCGKLESAEEIFDSMVNK--TVVSCTTMIVGYAKFG-FLDIARKIFDDLPE-KYVVPWNAIIGGYVQAKRSKEALAL 299 (588)
Q Consensus 224 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 299 (588)
...-.|-++.+++++..++.. +. +....++-..... .+++-..+.+...+ +++.+|..++++-..+|+.+.|..+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHH
Confidence 334445555555555544321 11 0101122111111 12222222222222 5555666666666666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh
Q 007818 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359 (588)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (588)
+.+|.+.|++.+.+-|..++-+ .++...++.+++-|...|+.|+..|+.-.+..+..
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 7777777666666655555544 55666666666666666666666666555544444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.5e-11 Score=106.51 Aligned_cols=252 Identities=12% Similarity=0.021 Sum_probs=151.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCCh
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (588)
+.+-.+.|+.+.+-.++.+..+.--.++..............|+++.|..-+..+.+.+.. ++.+.....++|.+.|++
T Consensus 125 A~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 125 AEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAW 203 (400)
T ss_pred HHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccH
Confidence 3444455666666666666655422333344444455555666666666666666555432 344455666666666666
Q ss_pred hHHHHHhccCCCCC-----------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHH
Q 007818 364 AKALQVFHEMPERN-----------SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEG 432 (588)
Q Consensus 364 ~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 432 (588)
.....++..+.+.. ..+|+.+++-....+..+.-...|++.-.+ .+-++..-..++.-+.+.|+.++|
T Consensus 204 ~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A 282 (400)
T COG3071 204 QALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEA 282 (400)
T ss_pred HHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHH
Confidence 66666666665421 235666666666666666655566655443 344555666667777777777777
Q ss_pred HHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 007818 433 RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-P-MAADVVVWGALFFACRLHGNVSIGERAAMKLLEL 510 (588)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (588)
.++.++..++ +..|+ ...++ ...+-++...-++..+.. . .+.++..+.++..-|.+.+.+.+|...++.+++.
T Consensus 283 ~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 283 QEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 7777777766 55554 11111 223444544444444332 1 1123366677777777788888888888877777
Q ss_pred CCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 511 DPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 511 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.| +...|..++.++.+.|+.++|.+..++...
T Consensus 358 ~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 358 RP-SASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77 566777788888888888888887777653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-09 Score=101.05 Aligned_cols=452 Identities=12% Similarity=0.047 Sum_probs=241.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhC
Q 007818 48 VAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127 (588)
Q Consensus 48 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (588)
+=+.-+..+|++++|.+...++.. . .+-+...+..-+-++.+.+.++.|..+.+.-... ..+..-+-.-.-+..+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~-~-~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILS-I-VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHh-c-CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHc
Confidence 334556667777788877777766 2 2233345555666667777777776443321110 01111101112233356
Q ss_pred CChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH-HhccCChhHHHHHHHHH
Q 007818 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA-CAQLEDLNLGREIHWYI 206 (588)
Q Consensus 128 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~ 206 (588)
+..++|+..++...+.+..+-..-...+.+.|++++|+++|+.+.+.+. ++ +..-+++ |...+..-.+ +.+
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd---~d~~~r~nl~a~~a~l~~----~~~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DD---QDEERRANLLAVAAALQV----QLL 164 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ch---HHHHHHHHHHHHHHhhhH----HHH
Confidence 7777777777744444444555556667777777777777777765542 22 1111111 0000000000 111
Q ss_pred HHhCCCC--ChhhHHHHHHHHHhcCChhHHHHHHHhcCC--------CCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC
Q 007818 207 SESGLTL--TVPLANALMDMYVKCGKLESAEEIFDSMVN--------KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276 (588)
Q Consensus 207 ~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 276 (588)
......| +-..+......++..|++.+|++++....+ .|.. -++ + +..
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~--------------eEe---i-----e~e 222 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN--------------EEE---I-----EEE 222 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc--------------hhh---H-----HHH
Confidence 1112222 122222334455666777777766655411 1100 000 0 000
Q ss_pred ccc-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHcccCChhH--HHHHHHH------------H
Q 007818 277 VVP-WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLS---ACSQLGALDD--GIWIHRF------------I 338 (588)
Q Consensus 277 ~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~~~~~~--a~~~~~~------------~ 338 (588)
+.+ --.+.-.+...|+..+|.+++...+... .+|........+ +...-.++.. .+..++. +
T Consensus 223 l~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~L 301 (652)
T KOG2376|consen 223 LNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKL 301 (652)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHH
Confidence 000 2334556677899999999999888874 445433322222 2222222211 1111111 1
Q ss_pred HHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCC-cchHHHHHHHHH--hcCChHHHHHHHHHHHHCCCCCCHHH
Q 007818 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN-SLTYTAIIGGLA--LHGKALDAISYFSEMIGVGLMPDEIT 415 (588)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~p~~~~ 415 (588)
... .......-+.++..| .+..+.+.++-...+... ...+.+++.... +...+..+.+++...-+....-...+
T Consensus 302 s~~-qk~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v 378 (652)
T KOG2376|consen 302 SKK-QKQAIYRNNALLALF--TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVV 378 (652)
T ss_pred HHH-HHHHHHHHHHHHHHH--hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHH
Confidence 110 000111123344444 355677777777776543 344555554432 23357778888877766532222345
Q ss_pred HHHHHHHhccCCchHHHHHHHH--------HhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC
Q 007818 416 FLGILSACCHGGLVDEGRKYFA--------QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--------MAA 479 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~ 479 (588)
....+......|+++.|.+++. .+.+. +.. +.+...+...+.+.++.+.|..++.+.. .++
T Consensus 379 ~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~ 455 (652)
T KOG2376|consen 379 LLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSI 455 (652)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccch
Confidence 5666777889999999999999 44433 333 4455667777888888777777776551 122
Q ss_pred C-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 480 D-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 480 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
. ...+..++..-.++|+-++|...++++++.+|++...+..+..+|.+. +.+.|..+-+.+
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 2 223444444446789999999999999999999999999999998876 455666655443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-10 Score=101.09 Aligned_cols=289 Identities=13% Similarity=0.060 Sum_probs=186.9
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 007818 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237 (588)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 237 (588)
.|+|.+|.++..+-.+.+-. ....|..-.++.-+.|+.+.+-.++.++.+....++........+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46666666666665444322 22334444455555666666666666665554444555555555555556666555554
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007818 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVH 317 (588)
Q Consensus 238 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 317 (588)
++.+.+- ...++........+|.+.|++.....++..+.+.|.--|...-
T Consensus 176 v~~ll~~----------------------------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-- 225 (400)
T COG3071 176 VDQLLEM----------------------------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-- 225 (400)
T ss_pred HHHHHHh----------------------------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH--
Confidence 4443221 1122233444556666777777777777777776644332211
Q ss_pred HHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCh
Q 007818 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKA 394 (588)
Q Consensus 318 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 394 (588)
. ....++..+++-....+..+.-...|+..+. .++..-.+++.-+.+.|+.
T Consensus 226 ---------------~-----------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 226 ---------------R-----------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred ---------------H-----------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCCh
Confidence 0 0123344555555555555555667777663 4567777778888888999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHh
Q 007818 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRS 474 (588)
Q Consensus 395 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 474 (588)
++|.++.++..+++..|+ ....-.+.+.++...-++..++..+ ..+.++..+..|...|.+.+.|.+|.+.|+.
T Consensus 280 ~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~--~h~~~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 280 DEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLK--QHPEDPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred HHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHH--hCCCChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999888888876666 2223345677788877777777777 4445567888899999999999999999986
Q ss_pred C-CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 475 M-PMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 475 ~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
. +..|+..+|.-+..++.+.|+...|.++.++.+.
T Consensus 354 Al~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 354 ALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5 5778999999999999999999999999988874
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.7e-10 Score=97.02 Aligned_cols=223 Identities=9% Similarity=0.063 Sum_probs=119.3
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhC
Q 007818 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272 (588)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 272 (588)
+++.++|.+.|-+|.+... .+..+..+|...|-+.|..|.|+++-..+.+....++..-+.+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lA----------------- 109 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLA----------------- 109 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHH-----------------
Confidence 3455666666666665321 1344445566666666666666666655544333333222111
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc----h
Q 007818 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV----V 348 (588)
Q Consensus 273 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 348 (588)
...|..-|...|-+|+|+.+|..+.+.| ..-......++..|-...++++|+.+-+.+.+.+..+.. .
T Consensus 110 -------l~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAq 181 (389)
T COG2956 110 -------LQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQ 181 (389)
T ss_pred -------HHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHH
Confidence 2334555677777777777777776643 223345566666677777777777777666665543322 1
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 425 (588)
.|..|...+....+.+.|..++.+..+. ++..-..+.+.+...|+++.|++.++...+.+..--+.+...+..+|..
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 2334444444455555555555554432 2233334445555556666666666555554322223345555555555
Q ss_pred CCchHHHHHHHHHhhh
Q 007818 426 GGLVDEGRKYFAQMSS 441 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~ 441 (588)
.|+.++...++.++.+
T Consensus 262 lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 262 LGKPAEGLNFLRRAME 277 (389)
T ss_pred hCCHHHHHHHHHHHHH
Confidence 5555555555555554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7e-10 Score=103.79 Aligned_cols=272 Identities=14% Similarity=0.043 Sum_probs=195.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCCCccc---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCCh
Q 007818 252 MIVGYAKFGFLDIARKIFDDLPEKYVVP---WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGAL 328 (588)
Q Consensus 252 ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 328 (588)
...-+-..+++.+..++++.+.+.++.. +..-|.++...|+..+-..+-.++++. .+-...+|-.+.--|...|..
T Consensus 250 ~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 250 KADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 3333444555555555555555444333 444455667777777777777777775 344566777777777777888
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007818 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMI 405 (588)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 405 (588)
++|++.|.+....+.. -...|-.+...|.-.|..++|...|....+ .....+.-+..-|.+.++...|.+.|.+..
T Consensus 329 seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8888888776655322 234577788888888888888887766543 222233335556888999999999999887
Q ss_pred HCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhc-----CCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-
Q 007818 406 GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF-----RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMA- 478 (588)
Q Consensus 406 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~- 478 (588)
... +-|+...+-+.-.....+.+.+|..+|+.....- ...-...+++.|+.+|.+.+.+++|+..++.. ...
T Consensus 408 ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~ 486 (611)
T KOG1173|consen 408 AIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP 486 (611)
T ss_pred hcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 742 4456677777777778899999999999887320 11124567889999999999999999999987 334
Q ss_pred CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
.+..++.+++..+...|+++.|+..|.+++.+.|+|..+-..|..+..
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 478889999999999999999999999999999998777666665443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.3e-11 Score=108.25 Aligned_cols=197 Identities=13% Similarity=0.042 Sum_probs=160.3
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566677788888888888888887653 245567778888899999999999999988764 44566777888888
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHH
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~ 501 (588)
...|++++|.+.++++......+.....+..+...+...|++++|.+.+++.. ..| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998742223345677778889999999999999998863 334 4667788888899999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..++++++..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998888888889999999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.2e-09 Score=101.70 Aligned_cols=129 Identities=19% Similarity=0.139 Sum_probs=111.3
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACR 492 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 492 (588)
.|......+.+.+..++|...+.++.+ ..+.....|......+...|.+++|.+.|... ...| ++.+...+...+.
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 455666778888999999988888886 44566778888888999999999999998876 4666 4678888989999
Q ss_pred hhCCHHHHHH--HHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 493 LHGNVSIGER--AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 493 ~~~~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+.|+...|.. +++.+++++|.++.+|..++.++.+.|+.++|.+.|....+..
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9998888877 9999999999999999999999999999999999999997754
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-11 Score=106.16 Aligned_cols=231 Identities=11% Similarity=-0.014 Sum_probs=185.1
Q ss_pred CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--C-CcchHHHHHHH
Q 007818 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--R-NSLTYTAIIGG 387 (588)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~ 387 (588)
|-+.-..+..+|.+.|.+.+|.+.++.-.+. .|-+.+|..|...|.+..++..|+.++.+..+ | ++.....+.+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 3334456677788888888888888777665 45566777788888888889999888887764 3 33334456677
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
+...++.++|.++|+...+.. +.+......+...|.-.++++-|.++++++.+. |+ .++..|..+.-++.-.++++-
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhh
Confidence 778889999999999888763 445556777777788888999999999999886 54 567788888888888899999
Q ss_pred HHHHHHhCC---CCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 468 AEQLIRSMP---MAA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 468 A~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
++.-|++.. ..| ....|-.+.......||+..|.+.|+-++..+|++..++++|+-.-.+.|+.++|..+++...
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 988888763 223 356888888888899999999999999999999999999999999999999999999999887
Q ss_pred hcCC
Q 007818 543 ERGV 546 (588)
Q Consensus 543 ~~~~ 546 (588)
....
T Consensus 457 s~~P 460 (478)
T KOG1129|consen 457 SVMP 460 (478)
T ss_pred hhCc
Confidence 6543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.8e-08 Score=93.08 Aligned_cols=460 Identities=15% Similarity=0.154 Sum_probs=255.1
Q ss_pred ccHHHHHHHHHccCChhhHHHHHHHHHHhc-CCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhC
Q 007818 80 FTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158 (588)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (588)
.++...+..+..+|++..-...|++.+..- +.-...+|...+......|-++-+..++++-.+-++..-+..+..+++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 356667777788999999999999988742 2233457888888888888889999999997666677788888999999
Q ss_pred CChhHHHHHHHHhHHC------CCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCC--CC--hhhHHHHHHHHHhc
Q 007818 159 GFPREAIRLFRDMQLE------RVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLT--LT--VPLANALMDMYVKC 228 (588)
Q Consensus 159 ~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~ 228 (588)
+++++|-+.+...... ..+.+...|..+....++..+.-....+ +.+...|+. +| -..+..|.+.|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 9999999888776432 1233444455444444443332222221 222223322 23 23577888888888
Q ss_pred CChhHHHHHHHhcCCC--CcchHHHHHHHHHhc----------------C------CHHHHHHHhhhCCCCCccc-----
Q 007818 229 GKLESAEEIFDSMVNK--TVVSCTTMIVGYAKF----------------G------FLDIARKIFDDLPEKYVVP----- 279 (588)
Q Consensus 229 g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~~~~~----- 279 (588)
|.+++|.++|++..+. .+..|....+.|+.- + +++-...-|+.+....+..
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 8888888888776443 222222222222110 0 1111122222221111111
Q ss_pred ----------HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHcccCChhHHHHHHHHHHHhCC
Q 007818 280 ----------WNAIIGGYVQAKRSKEALALFHEMQATGIKPD------AVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343 (588)
Q Consensus 280 ----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 343 (588)
|..-+ -...|+..+....|.+.... +.|. ...+..+...|-..|+++.|..+|++..+...
T Consensus 342 LRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 11111 11233444455555555443 2221 11234444555555555555555555554433
Q ss_pred CCc---chHHHHHHHHhHhcCChhHHHHHhccCCC-C--------------------CcchHHHHHHHHH----------
Q 007818 344 NLN---VVLGTALVDMYAKCGNIAKALQVFHEMPE-R--------------------NSLTYTAIIGGLA---------- 389 (588)
Q Consensus 344 ~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~--------------------~~~~~~~l~~~~~---------- 389 (588)
+.- ..+|.....+-.+..+++.|.++.+.... | +...|...++..-
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 221 23344444455555555555555544321 0 1112222222222
Q ss_pred ------------------------hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhc---cCCchHHHHHHHHHhhh
Q 007818 390 ------------------------LHGKALDAISYFSEMIGVGLMPDEI-TFLGILSACC---HGGLVDEGRKYFAQMSS 441 (588)
Q Consensus 390 ------------------------~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~---~~~~~~~a~~~~~~~~~ 441 (588)
.+.-++++.++|++-+..--.|+.. .|+..+.-+. ....++.|..+|++..+
T Consensus 499 vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 3334556666666554443234443 3444443333 23468899999999988
Q ss_pred hcCCCCCh--HHHHHHHHHHHhcCChHHHHHHHHhCCCCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 442 IFRLSPKL--KHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 442 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
+.+|.. ..|-.....=-+-|-...|..+++++...-. ...|+..+.-.+..=-...-..+|+++++.-|++.
T Consensus 579 --~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~ 656 (835)
T KOG2047|consen 579 --GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSK 656 (835)
T ss_pred --cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHH
Confidence 666653 2233333334466888889999998753322 33455555443333334556778999999888633
Q ss_pred c--hHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 516 G--IYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 516 ~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
. .....+..-.+.|..+.|+.++....+--
T Consensus 657 ~r~mclrFAdlEtklGEidRARaIya~~sq~~ 688 (835)
T KOG2047|consen 657 AREMCLRFADLETKLGEIDRARAIYAHGSQIC 688 (835)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC
Confidence 2 23345677788999999999999886654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-08 Score=90.23 Aligned_cols=269 Identities=11% Similarity=-0.029 Sum_probs=173.0
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCccc---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007818 245 TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP---WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSA 321 (588)
Q Consensus 245 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 321 (588)
|+.....+...+...|+.++|+..|+.....|+.+ .......+.+.|+.++...+...+.... .-....|-.-...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 44444444455555555555555555444333322 1112223445666666666655554421 1111112111222
Q ss_pred HcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC--C-CCcchHHHHHHHHHhcCChHHHH
Q 007818 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP--E-RNSLTYTAIIGGLALHGKALDAI 398 (588)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~a~ 398 (588)
....++++.|+.+-++..+.+. .+...+-.-...+...|++++|.-.|+... . -+...|..|+..|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 2345566666666666555432 233444444566777888888888887765 2 36778889999999999998888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHhc-cCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 399 SYFSEMIGVGLMPDEITFLGIL-SACC-HGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 399 ~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
-+-+...+. +..+..+...+. ..|. ...--++|..++++..+ +.|+ ....+.+...+...|..+.+..++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 887776554 344555655552 3333 23345789999988874 3565 567778889999999999999999886
Q ss_pred -CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 476 -PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 476 -~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
...||......+...+...+.+++|...|..++.++|++..+..
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 56689999999999999999999999999999999998754443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-10 Score=95.97 Aligned_cols=163 Identities=17% Similarity=0.059 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
...|.-.|...|++..|..-+++.++.. +-+..++..+...|.+.|+.+.|.+-|++... --+-+..+.|.....++
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 4456677888888888888888888863 33445788888888888888888888888886 33445677888888888
Q ss_pred hcCChHHHHHHHHhCCCCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHH
Q 007818 461 RSGLLEEAEQLIRSMPMAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (588)
..|++++|...|++....|. ..+|..+..+..+.|+++.|...+++.++.+|+.+.....++......|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 88899999888888755553 55777887777888899999999999999999888888888998899999999988
Q ss_pred HHHHHHhcCC
Q 007818 537 VRKMMEERGV 546 (588)
Q Consensus 537 ~~~~~~~~~~ 546 (588)
++++....+.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 8888877654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-07 Score=88.70 Aligned_cols=409 Identities=12% Similarity=0.042 Sum_probs=197.6
Q ss_pred hCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHH
Q 007818 126 SCGDLGLACNVFDESCV---RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI 202 (588)
Q Consensus 126 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 202 (588)
..|+-++|......... .+.++|+.+.-.+....++++|++.|......+ +-|...+..+.-.-++.|+.+.....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34444444444443221 233445554444444455555555555444332 22233333333333444444444444
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCC-----CCcchHHH------HHHHHHhcCCHHHHHHHhhh
Q 007818 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN-----KTVVSCTT------MIVGYAKFGFLDIARKIFDD 271 (588)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~------ll~~~~~~~~~~~a~~~~~~ 271 (588)
...+.+.... ....|..++.++.-.|++..|..+++...+ ++...+.. ......+.|..+.|.+.+..
T Consensus 132 r~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 4444433111 233344444444445555555554444321 11111111 11223445555555555544
Q ss_pred CCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHc-ccCChhHHH-HHHHHHHHhCCCCc
Q 007818 272 LPEK---YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS-QLGALDDGI-WIHRFIEKENFNLN 346 (588)
Q Consensus 272 ~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~~~~~~ 346 (588)
.... ....-..-...+.+.++.++|..++..+... .||..-|...+..+. +..+.-++. .++....+.-. .
T Consensus 211 ~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~--r 286 (700)
T KOG1156|consen 211 NEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYP--R 286 (700)
T ss_pred hhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCc--c
Confidence 3321 1111223344566677777777777777775 466666655444433 233333333 44444433211 1
Q ss_pred chHHHHHHHHhHhcCCh-hHHHHHhccCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHH----CC----------CC
Q 007818 347 VVLGTALVDMYAKCGNI-AKALQVFHEMPER-NSLTYTAIIGGLALHGKALDAISYFSEMIG----VG----------LM 410 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~ 410 (588)
...-..+--......++ +....++....+. -+.++..+.+.|-.....+-..++.-.+.. .| -+
T Consensus 287 ~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 287 HECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred cccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 10000000001111112 2222233322222 233444444444332222211111111111 11 14
Q ss_pred CCHH--HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHhHHH
Q 007818 411 PDEI--TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSMP-M-AADVVVWG 485 (588)
Q Consensus 411 p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~ 485 (588)
|... ++..++..+-+.|+++.|..+++.+.. ..|+ +..|..-.+.+...|+.++|..++++.. . .||...-.
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INs 443 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINS 443 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHH
Confidence 4544 344566778889999999999998885 3566 5667677788888999999999998874 2 24544444
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCC------CCc-hHHH--HHHHHHccCChHHHHHHHHHHHh
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQ------DSG-IYVL--LANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~-~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.-+.-..+.++.++|..+..+.-+-+-+ +.. .|.. =+.+|.++|++..|++=|..+.+
T Consensus 444 KcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 444 KCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 5555566788889999888877654431 011 1222 36788888899888877766643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-09 Score=110.23 Aligned_cols=246 Identities=12% Similarity=-0.004 Sum_probs=174.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHc---------ccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC
Q 007818 292 RSKEALALFHEMQATGIKPDA-VTTVHCLSACS---------QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361 (588)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (588)
..++|...|++..+. .|+. ..+..+..++. ..+++++|...++++.+.++ .+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcc
Confidence 467899999998875 4543 34444433322 33457889999998888753 35667778888899999
Q ss_pred ChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccCCchHHHHHHHH
Q 007818 362 NIAKALQVFHEMPE--R-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE-ITFLGILSACCHGGLVDEGRKYFA 437 (588)
Q Consensus 362 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~ 437 (588)
++++|...|++..+ | +...+..+...+...|++++|+..+++..+. .|+. ..+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999998764 3 4557888889999999999999999999986 4443 233344445666899999999999
Q ss_pred HhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHh-HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVV-VWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 438 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
++... ..+.++..+..+..+|...|++++|.+.++++. ..|+.. .+..+...+...| +.|...++++++..-..+
T Consensus 431 ~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 98764 222245567788889999999999999999874 345544 3444444556666 477777777765432222
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
.....+..+|.-.|+.+.+... +++.+.+.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 2233367777788888877776 87776653
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-07 Score=83.22 Aligned_cols=454 Identities=11% Similarity=0.039 Sum_probs=235.2
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 007818 50 IRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (588)
+.-+....++..|+.+++.-.. .+-.....+-.-+..++...|++++|...+.-+.+.. .++......|..++.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 6667777788888887776543 2111111222223344457788888888877777643 4555555556666666677
Q ss_pred hhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 007818 130 LGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES 209 (588)
Q Consensus 130 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 209 (588)
+.+|..+-.+.+ .++..-..+.....+.++-++...+-+.+... ...-.++.......-...+|.+++..++..
T Consensus 107 Y~eA~~~~~ka~-k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKAP-KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhCC-CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777776665542 12223333444444555555554444443321 011112222222233444555555555443
Q ss_pred CCCCChhhHHH-HHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHH
Q 007818 210 GLTLTVPLANA-LMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYV 288 (588)
Q Consensus 210 ~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 288 (588)
+ |+-...|. +.-+|.+.+-++-+.++++-..+. ...++...|..+....
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q----------------------------~pdStiA~NLkacn~f 230 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ----------------------------FPDSTIAKNLKACNLF 230 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh----------------------------CCCcHHHHHHHHHHHh
Confidence 1 11112221 222334444444444433332111 0011111222222222
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHH
Q 007818 289 QAKRSKEALALFHEMQATGIKPDAVTTVHCLS-ACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKAL 367 (588)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 367 (588)
+.=.-..|..-.+++.+.+-..-.. ...+++ -+.--.+-+.|++++-.+.+. -|. .-..|+-.|.+.++.++|.
T Consensus 231 Rl~ngr~ae~E~k~ladN~~~~~~f-~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~ 305 (557)
T KOG3785|consen 231 RLINGRTAEDEKKELADNIDQEYPF-IEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAI 305 (557)
T ss_pred hhhccchhHHHHHHHHhcccccchh-HHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHH
Confidence 2212223333344444432111000 001111 111223456677766555443 122 2234666788999999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHhcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHh
Q 007818 368 QVFHEMPERNSLTYTAIIGGLALHGK-------ALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQM 439 (588)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 439 (588)
.+.+++....+.-|..-.-.++..|+ ..-|.+.|+-.-..+..-|.. .-..+..++.-..++++.+.+++.+
T Consensus 306 ~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi 385 (557)
T KOG3785|consen 306 SLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSI 385 (557)
T ss_pred HHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876555544433333444443 333444444433333332322 1233444455556788899888888
Q ss_pred hhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCC--CCHhHHHH-HHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA--ADVVVWGA-LFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
..- +..|...-..+..++...|++.+|+++|-++... .+..+|.. +.+.|.+.+..+.|..++-+. -.|.+..
T Consensus 386 ~sY--F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~f 461 (557)
T KOG3785|consen 386 ESY--FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERF 461 (557)
T ss_pred HHH--hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHH
Confidence 763 3333333345889999999999999999887422 24445544 445567778888887765443 2243333
Q ss_pred h-HHHHHHHHHccCChHHHHHHHHHHHhcCCccCC
Q 007818 517 I-YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTP 550 (588)
Q Consensus 517 ~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 550 (588)
+ +..++..|.+.+.+-=|-+.|+.+...+.+|..
T Consensus 462 sLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 462 SLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 3 445688899999999999999999887665543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.5e-08 Score=94.00 Aligned_cols=286 Identities=15% Similarity=0.111 Sum_probs=138.9
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCCCc-ccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChh-HHHHHHHHHHhC-
Q 007818 51 RGFLETGKMREAVDLYKQMLRNGGTRPDN-FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMY-VHNAVIHVFVSC- 127 (588)
Q Consensus 51 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~- 127 (588)
..+...|++++|++.++.-.. .-+|. ..+......+.+.|+.++|..++..+++.+ |+.. -|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~---~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK---QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh---hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 455777888888888876544 33443 345555677778888888888888888876 4443 344444444222
Q ss_pred ----CChhHHHHHhccCCC--CCcccHHHHHHHHHhCCCh-hHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHH
Q 007818 128 ----GDLGLACNVFDESCV--RNLVSWNSLINGFVRSGFP-REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGR 200 (588)
Q Consensus 128 ----~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 200 (588)
.+.+...++++++.. |...+...+.-.+.....+ ..+...+..+..+|+|+ +|+.|-..|..........
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 234555556655322 1111111111111111122 23444556666677543 3444444455444444444
Q ss_pred HHHHHHHHh----C----------CCCCh--hhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHH
Q 007818 201 EIHWYISES----G----------LTLTV--PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264 (588)
Q Consensus 201 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 264 (588)
+++...... + -+|+. .++..+...|-..|++++|++.++..++.++...
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~--------------- 228 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV--------------- 228 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH---------------
Confidence 554444332 0 01222 2334445555566666666666665544433211
Q ss_pred HHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCC
Q 007818 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344 (588)
Q Consensus 265 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (588)
..|..-...+-+.|++.+|.+.++...... .-|...-+-....+.+.|+.++|.+++....+.+..
T Consensus 229 -------------ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~ 294 (517)
T PF12569_consen 229 -------------ELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD 294 (517)
T ss_pred -------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC
Confidence 113334444445555555555555554432 123333333444444555555555555444444332
Q ss_pred Ccc--------hHHHHHHHHhHhcCChhHHHHHhccC
Q 007818 345 LNV--------VLGTALVDMYAKCGNIAKALQVFHEM 373 (588)
Q Consensus 345 ~~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~ 373 (588)
|.. ........+|.+.|++..|++.|..+
T Consensus 295 ~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 295 PLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 221 11233455666666666666555444
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=99.46 Aligned_cols=230 Identities=12% Similarity=0.068 Sum_probs=188.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhc
Q 007818 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC 360 (588)
Q Consensus 281 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (588)
+.+.++|.+.|.+.+|.+-++..... .|-..||..+-.+|.+..++..|+.++.+-.+.- +-++....-..+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56788889999999999988887775 5677788888899999999999999988777652 33444555677788888
Q ss_pred CChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHH
Q 007818 361 GNIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437 (588)
Q Consensus 361 ~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 437 (588)
++.++|.++|+...+. ++.....+...|.-.++++.|+..|+++.+.| .-++..|..+.-+|.-.+++|-+..-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 9999999999987753 55666667778888999999999999999998 4578889999999999999999999999
Q ss_pred HhhhhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 438 QMSSIFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 438 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
+.... --.|+ ..+|..+....+..|++.-|.+.|+-. ...| ....++.+.-.-.+.|++++|..++..+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98775 33344 577888888889999999999999866 3344 5668888877788999999999999999999996
Q ss_pred CC
Q 007818 514 DS 515 (588)
Q Consensus 514 ~~ 515 (588)
-.
T Consensus 462 m~ 463 (478)
T KOG1129|consen 462 MA 463 (478)
T ss_pred cc
Confidence 43
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-09 Score=98.92 Aligned_cols=164 Identities=13% Similarity=0.121 Sum_probs=142.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 4567778899999999999999999998763 345667888889999999999999999999874 3455678888999
Q ss_pred HHHhcCChHHHHHHHHhCCCC----CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHH
Q 007818 458 LLGRSGLLEEAEQLIRSMPMA----ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533 (588)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (588)
.+...|++++|.+.+++.... .....+..+...+...|++++|...+.++++..|+++..+..++.++...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999987422 2345677778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 007818 534 AGKVRKMMEER 544 (588)
Q Consensus 534 A~~~~~~~~~~ 544 (588)
|.+++++..+.
T Consensus 188 A~~~~~~~~~~ 198 (234)
T TIGR02521 188 ARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHh
Confidence 99999999876
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.7e-11 Score=78.92 Aligned_cols=50 Identities=28% Similarity=0.608 Sum_probs=45.7
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 007818 143 RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192 (588)
Q Consensus 143 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 192 (588)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-09 Score=104.90 Aligned_cols=229 Identities=17% Similarity=0.177 Sum_probs=154.7
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHh-----CC-CCcc-hHHHHHHHHhHhcCChhHHHHHhccCCC-------CC--
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKE-----NF-NLNV-VLGTALVDMYAKCGNIAKALQVFHEMPE-------RN-- 377 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~-- 377 (588)
+...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++++|..+|+++.. ++
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444555555555555555555444332 10 1111 1223455667777777777777766542 11
Q ss_pred --cchHHHHHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcC--CC
Q 007818 378 --SLTYTAIIGGLALHGKALDAISYFSEMIG-----VGL-MPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFR--LS 446 (588)
Q Consensus 378 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 446 (588)
..+++.|..+|.+.|++++|...++...+ .|. .|... .++.+...|...+++++|..++....+.+. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 23566677777888887777777766433 121 22222 466677778889999999998888765432 22
Q ss_pred CC----hHHHHHHHHHHHhcCChHHHHHHHHhCC---------CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhc---
Q 007818 447 PK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP---------MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLE--- 509 (588)
Q Consensus 447 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--- 509 (588)
++ ..+++.|...|...|++++|.++++++. ..+ ....++.+...|.+.+++.+|.++|.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 4678899999999999999999998772 122 255778888899999999999998887764
Q ss_pred -cCCCCC---chHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 510 -LDPQDS---GIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 510 -~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
..|++| ..|.+|+.+|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345554 458899999999999999999999885
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-09 Score=101.02 Aligned_cols=148 Identities=13% Similarity=-0.058 Sum_probs=75.6
Q ss_pred cCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHH
Q 007818 290 AKRSKEALALFHEMQATG-IKPD--AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366 (588)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 366 (588)
.+..+.++.-+.++.... ..|+ ...|......+...|+.+.|...|+...+..+ .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 345566666666666432 1222 22344444455566666666666666555432 2345555666666666666666
Q ss_pred HHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhh
Q 007818 367 LQVFHEMPE--R-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440 (588)
Q Consensus 367 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 440 (588)
...|+...+ | +..+|..+..++...|++++|++.++...+. .|+..........+...+++++|...+++..
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666655542 2 2344555555555666666666666665553 3332211111122233455666666665443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.8e-07 Score=86.12 Aligned_cols=452 Identities=12% Similarity=0.052 Sum_probs=283.5
Q ss_pred hhhHHHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHH
Q 007818 12 APSRLIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKV 88 (588)
Q Consensus 12 ~~~~ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (588)
.+-.++..|- .+.+..-.+..+.+- +....+.....-.+...|+.++|.+......+ +-.-+.+.|+.+.-.
T Consensus 10 lF~~~lk~yE---~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 10 LFRRALKCYE---TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHH---HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHH
Confidence 3445566664 555655555554432 11222333333345667888999888877665 233455678777777
Q ss_pred HHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChhHHH
Q 007818 89 CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPREAI 165 (588)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 165 (588)
+....++++|.+.+..+...+ +.|...+..+.-.-++.++++........ ..+.....|..+..++.-.|+...|.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999999999866 45667777777777778887776665554 34445667888888999999999999
Q ss_pred HHHHHhHHCC-CCCCcchHHHHHH------HHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 007818 166 RLFRDMQLER-VEPDEVTMIGMVS------ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238 (588)
Q Consensus 166 ~~~~~m~~~~-~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 238 (588)
.++++..+.. -.|+...|..... .....|..+.|.+.+...... +......-..-...+.+.+++++|..++
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 9999987764 3566666553332 235567777777776655443 1212333345567788999999999999
Q ss_pred HhcCCCCcc--hH-HHHHHHHHhcCCHHHHH-HHhhhCCCC---CcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007818 239 DSMVNKTVV--SC-TTMIVGYAKFGFLDIAR-KIFDDLPEK---YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311 (588)
Q Consensus 239 ~~~~~~~~~--~~-~~ll~~~~~~~~~~~a~-~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 311 (588)
..+..+++. .| ..+..++.+-.+..++. .+|....+. ...+-..=+.......-.+...+++..+.+.|+++-
T Consensus 243 ~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v 322 (700)
T KOG1156|consen 243 RRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV 322 (700)
T ss_pred HHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch
Confidence 999776443 33 33444443333333333 455444321 111111111112222234456677778888887654
Q ss_pred HHHHHHHHHHHcccCChhHHHHHHHHHHH----hC----------CCCcch--HHHHHHHHhHhcCChhHHHHHhccCCC
Q 007818 312 AVTTVHCLSACSQLGALDDGIWIHRFIEK----EN----------FNLNVV--LGTALVDMYAKCGNIAKALQVFHEMPE 375 (588)
Q Consensus 312 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~ 375 (588)
...+ ...+-.....+-..++.-.+.. .| -+|+.. ++-.++..|-..|+++.|...++....
T Consensus 323 f~dl---~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 323 FKDL---RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred hhhh---HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 3333 3323222211111111111111 11 133433 344567788899999999999999987
Q ss_pred CCcc---hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCC--CC--
Q 007818 376 RNSL---TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS--PK-- 448 (588)
Q Consensus 376 ~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~-- 448 (588)
..+. .|..-.+.+...|+.+.|..++++..+.. .||...-........++++.++|.++.....+. |.. .+
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~-~~~~~~~L~ 477 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTRE-GFGAVNNLA 477 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhc-ccchhhhHH
Confidence 5544 34445678899999999999999999875 666666667778888999999999999988775 431 11
Q ss_pred --hHHHHHH--HHHHHhcCChHHHHHHHHhC
Q 007818 449 --LKHYSCM--VDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 449 --~~~~~~l--~~~~~~~g~~~~A~~~~~~~ 475 (588)
.-.|-.+ +.+|.+.|++..|++-|..+
T Consensus 478 ~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 478 EMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred HhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 1122222 45688888888888777666
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-06 Score=87.01 Aligned_cols=497 Identities=12% Similarity=0.113 Sum_probs=285.9
Q ss_pred chhhHHHHhhcccCCCChhhHHhhcccCCC--CChhhH-----HHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHH
Q 007818 11 FAPSRLIAFCAISESKNLDYCTKILFNVQN--PNSFSW-----NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYP 83 (588)
Q Consensus 11 ~~~~~ll~~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 83 (588)
+-+..+.+.|. +.|=...|++.+..+.. ....+- .-++ .|.-.-.++...+.++.|.. .+++.+..+.-
T Consensus 607 yDra~IAqLCE--KAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~-~NirqNlQi~V 682 (1666)
T KOG0985|consen 607 YDRAEIAQLCE--KAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLS-ANIRQNLQIVV 682 (1666)
T ss_pred ccHHHHHHHHH--hcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHH-HHHHhhhHHHH
Confidence 33556666777 77777777777766541 111110 0111 22233356777777777776 55666665555
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHh-----------cCCCChhHHHHHHHHHHhCCChhHHHHHhccCC-----------
Q 007818 84 LLFKVCASLGLRFLGYEIFGHVLKL-----------GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC----------- 141 (588)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------- 141 (588)
.+..-|...=..+...++|+..+.- ++.-|+.+.-..|.+.++.|++.+.+++.++..
T Consensus 683 Qvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfL 762 (1666)
T KOG0985|consen 683 QVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFL 762 (1666)
T ss_pred HHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHH
Confidence 5554444443444455555554332 245677778888899999999999888876521
Q ss_pred --------CC-----Cccc-HHH------------HHHHHHhCCChhHHHHHHHHhHHCCCCCCcch-------------
Q 007818 142 --------VR-----NLVS-WNS------------LINGFVRSGFPREAIRLFRDMQLERVEPDEVT------------- 182 (588)
Q Consensus 142 --------~~-----~~~~-~~~------------l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~------------- 182 (588)
-| |... .+. .|..|.+.=++.+.-.+.-.+..- .-+...
T Consensus 763 keAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~--dC~E~~ik~Li~~v~gq~~ 840 (1666)
T KOG0985|consen 763 KEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDV--DCSEDFIKNLILSVRGQFP 840 (1666)
T ss_pred HhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcC--CCcHHHHHHHHHHHhccCC
Confidence 01 1111 111 223333322222222221111110 111111
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhH-HHH---HHHh------cCCCCc------
Q 007818 183 MIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES-AEE---IFDS------MVNKTV------ 246 (588)
Q Consensus 183 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~---~~~~------~~~~~~------ 246 (588)
...+..-+-++++...-..+++...+.|.. ++.++++|...|..+++-.+ -++ .++. ..++|+
T Consensus 841 ~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~va 919 (1666)
T KOG0985|consen 841 VDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVA 919 (1666)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEe
Confidence 122333344555666666777777778876 88999999998887765332 111 1111 112222
Q ss_pred -----------------chHHHHHHHHHhcCCHHHHHHHhhhCC-----------------CCCcccHHHHHHHHHhcCC
Q 007818 247 -----------------VSCTTMIVGYAKFGFLDIARKIFDDLP-----------------EKYVVPWNAIIGGYVQAKR 292 (588)
Q Consensus 247 -----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~ 292 (588)
..|....+.+.+..+.+.-.+++.+-. ..|+......+.++...+-
T Consensus 920 YerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadL 999 (1666)
T KOG0985|consen 920 YERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADL 999 (1666)
T ss_pred ecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCC
Confidence 123344444555666665555553221 1345557777888888888
Q ss_pred hHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHcccCChhHHHHHHHHHHHhC-----------------------CCCcc
Q 007818 293 SKEALALFHEMQATGIKP--DAVTTVHCLSACSQLGALDDGIWIHRFIEKEN-----------------------FNLNV 347 (588)
Q Consensus 293 ~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~ 347 (588)
..+-+++++++.-.+... +...-+.++-...+ .+...+.+..+++...+ +..+.
T Consensus 1000 p~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~ 1078 (1666)
T KOG0985|consen 1000 PNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNV 1078 (1666)
T ss_pred cHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccH
Confidence 888888888876432111 11112222222211 12222333322222111 00111
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 427 (588)
...+.|+. ..+.++.|.+.-++.. .+..|..+..+-.+.|...+|++-|-+ .-|+..|..+++.+.+.|
T Consensus 1079 ~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1079 SAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTG 1147 (1666)
T ss_pred HHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcC
Confidence 11111111 1233344443333333 456899999999999999998877643 346678999999999999
Q ss_pred chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHH
Q 007818 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKL 507 (588)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 507 (588)
.|++-.+++..++++ ...|... ..|+-+|++.++..+.++++ .-|+......+..-|...|.++.|.-+|.
T Consensus 1148 ~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-- 1218 (1666)
T KOG0985|consen 1148 KYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYS-- 1218 (1666)
T ss_pred cHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHH--
Confidence 999999999998887 5566554 56899999999999887776 34788888888888999999998888876
Q ss_pred hccCCCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 508 LELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 508 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
+.+.|..|+..+...|.++.|...-+++
T Consensus 1219 ------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1219 ------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3456778888888888888776554433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-07 Score=90.96 Aligned_cols=188 Identities=18% Similarity=0.126 Sum_probs=95.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhH
Q 007818 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365 (588)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (588)
+....+.|.+|+.+++.++.+. .-..-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+.|+++.
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 3344555666666666555542 12223445555666666666666665322 223445566666666666
Q ss_pred HHHHhccCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhc
Q 007818 366 ALQVFHEMPERN--SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443 (588)
Q Consensus 366 A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (588)
|.++-++...|. ...|.+-..-+-.+|++.+|.++|-... .|+. .+..|-+.|..+..+++.++-...
T Consensus 810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh-
Confidence 666666555442 2334444444555666666665553221 2332 344555556666555554443221
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHH
Q 007818 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503 (588)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 503 (588)
.-..+...+..-|...|+...|.+-|-+.. -|...+..|...+-++.|.++
T Consensus 880 ---~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 880 ---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred ---hhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHH
Confidence 112334455566666667666666664442 244444555555555555444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-09 Score=108.81 Aligned_cols=212 Identities=12% Similarity=0.018 Sum_probs=163.4
Q ss_pred CChhHHHHHHHHHHHhCCCCcchHHHHHHHHhH---------hcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCC
Q 007818 326 GALDDGIWIHRFIEKENFNLNVVLGTALVDMYA---------KCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGK 393 (588)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 393 (588)
++.++|...+++..+..+. +...+..+..++. ..+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3467889999988876432 3444555555443 23457899999988774 356678888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHH
Q 007818 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLI 472 (588)
Q Consensus 394 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 472 (588)
+++|...|++..+.+ +.+...+..+..++...|++++|...++++.+. .|+ ...+..++..+...|++++|.+.+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999864 334567888888999999999999999999874 344 333344555677789999999999
Q ss_pred HhCC--CCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 473 RSMP--MAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 473 ~~~~--~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+++. ..|+ +..+..+..++...|++++|...+.++....|.+......++..|...| ++|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8873 2353 4456667777889999999999999999888988888888988888888 4888888887654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.7e-11 Score=76.49 Aligned_cols=50 Identities=34% Similarity=0.745 Sum_probs=37.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc
Q 007818 41 PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS 91 (588)
Q Consensus 41 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (588)
||..+||++|++|++.|++++|.++|++|.+ .|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~-~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKK-RGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHcC
Confidence 6777777777777777777777777777776 6777777777777777653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-06 Score=85.50 Aligned_cols=203 Identities=18% Similarity=0.166 Sum_probs=127.1
Q ss_pred cCCchhhHHHHhhcccCCCChhhHHhhcccCC-------------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCC
Q 007818 8 SHGFAPSRLIAFCAISESKNLDYCTKILFNVQ-------------NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGG 74 (588)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 74 (588)
.+..+|.++.++|. +..+++-|.-.+-.|. .++ ..=..+.-.-.+.|..++|..+|.+-.+
T Consensus 755 kS~~vW~nmA~McV--kT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--- 828 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCV--KTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR--- 828 (1416)
T ss_pred hhhHHHHHHHHHhh--hhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---
Confidence 34567888888888 7777777766665553 221 1111112222456788888888888766
Q ss_pred CCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCC------------
Q 007818 75 TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV------------ 142 (588)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------ 142 (588)
|..+=+.|...|.+++|.++-+.--...+ ..||......+-..+|.+.|++.|++...
T Consensus 829 -------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~ 898 (1416)
T KOG3617|consen 829 -------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEY 898 (1416)
T ss_pred -------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhC
Confidence 44555666777888888877665433222 23555555566667888888888876321
Q ss_pred -----------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 007818 143 -----------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211 (588)
Q Consensus 143 -----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 211 (588)
.|...|.-....+-..|+.+.|+.+|...+. |-.+.+..+-+|+.++|-++-++--
T Consensus 899 p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg---- 965 (1416)
T KOG3617|consen 899 PKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG---- 965 (1416)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc----
Confidence 1333344444444556777777777766543 3445556666777777777655422
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 212 TLTVPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 212 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
|......|.+.|-..|++.+|..+|.+.
T Consensus 966 --d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 966 --DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred --cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455567888888888888888888775
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-07 Score=81.17 Aligned_cols=265 Identities=11% Similarity=0.003 Sum_probs=197.8
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHH
Q 007818 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV-HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353 (588)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 353 (588)
.|+.....+.+++...|+.++|+..|++.... .|+..+-. ...-.+...|+++....+...+.... ..+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 45666888999999999999999999988764 45544322 22223456788888888777765543 1122223333
Q ss_pred HHHhHhcCChhHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchH
Q 007818 354 VDMYAKCGNIAKALQVFHEMPERN---SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 430 (588)
+......+++..|+.+-++..+.+ ...+..-...+...|++++|.-.|+..+... +-+..+|..++.+|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 344556788999999988877544 4455444567889999999999999988752 346679999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHHHH-HHHH-hcCChHHHHHHHHhC-CCCCCH-hHHHHHHHHHHhhCCHHHHHHHHHH
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSCMV-DLLG-RSGLLEEAEQLIRSM-PMAADV-VVWGALFFACRLHGNVSIGERAAMK 506 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 506 (588)
+|...-+...+ -++.+..+...+. ..+. ....-++|.+++++. ..+|+. .....+..-|...|.++.++.++++
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99988888776 4455666666553 3322 333458899999875 677874 4666777778899999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 507 LLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 507 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
.+...| |....+.|++.+...+.+++|.+.|..+.+.+.
T Consensus 464 ~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 464 HLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 999999 567899999999999999999999998876543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-08 Score=95.81 Aligned_cols=95 Identities=19% Similarity=0.175 Sum_probs=65.4
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhc-----C-CCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCC
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIF-----R-LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--------MAAD 480 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~ 480 (588)
++..+...|.+.|++++|.++++++.... + ..-....++.|...|.+.+.+.+|.++|.+.. ..|+
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 66777777777777777777777765541 1 11124556677777888888887777777652 2243
Q ss_pred -HhHHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 481 -VVVWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 481 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
..++..|..+|...|+++.|+++..+++.
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 44778888888888888888888887763
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.4e-06 Score=82.73 Aligned_cols=213 Identities=12% Similarity=0.043 Sum_probs=138.6
Q ss_pred HHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH--
Q 007818 16 LIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA-- 90 (588)
Q Consensus 16 ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 90 (588)
=+..+. +.|++++|.+....+. +.|..++.+=+-++.+.+++++|+.+.+.-.. ...+...+ +=++|+
T Consensus 18 ~ln~~~--~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~--fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHG--KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFF--FEKAYCEY 90 (652)
T ss_pred HHHHhc--cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhh--HHHHHHHH
Confidence 345666 8999999998887754 56677788888888999999999965544321 11222221 334554
Q ss_pred ccCChhhHHHHHHHHHHhcCCC-ChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHH
Q 007818 91 SLGLRFLGYEIFGHVLKLGFDV-DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR 169 (588)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 169 (588)
+.+..++|...++ |..+ +..+...-...+.+.|++++|..+|+.+.+.+...+...+++-+..-- .+... .
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--a~l~~-~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--AALQV-Q 162 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH--HhhhH-H
Confidence 8899999999888 3333 344666777888899999999999999877777766665554322111 11111 1
Q ss_pred HhHHCCCCCCcchHHHHHH---HHhccCChhHHHHHHHHHHHhCC-------CCCh-------hhHHHHHHHHHhcCChh
Q 007818 170 DMQLERVEPDEVTMIGMVS---ACAQLEDLNLGREIHWYISESGL-------TLTV-------PLANALMDMYVKCGKLE 232 (588)
Q Consensus 170 ~m~~~~~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~g~~~ 232 (588)
.+......| ..+|..+.+ .++..|++.+|+++++.....+. .-+. .+..-+...+...|+.+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 233333333 446665554 34678999999999998843221 1111 12334555677789999
Q ss_pred HHHHHHHhcCCC
Q 007818 233 SAEEIFDSMVNK 244 (588)
Q Consensus 233 ~A~~~~~~~~~~ 244 (588)
+|..++..+.+.
T Consensus 242 ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 242 EASSIYVDIIKR 253 (652)
T ss_pred HHHHHHHHHHHh
Confidence 999988888654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.9e-07 Score=86.29 Aligned_cols=350 Identities=15% Similarity=0.099 Sum_probs=207.6
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC
Q 007818 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230 (588)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 230 (588)
.+.+......|.+|+.+++.+.... ....-|..+...|+..|+++.|+++|-+. ..++..+.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 3556677889999999999887653 34455778889999999999999988543 345778899999999
Q ss_pred hhHHHHHHHhcCCCC--cchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007818 231 LESAEEIFDSMVNKT--VVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGI 308 (588)
Q Consensus 231 ~~~A~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 308 (588)
|+.|.++-.+...|. ...|-+-..-+-+.|++.+|++++-.+..|+. .|..|-+.|..+..+++...-...
T Consensus 807 w~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d-- 879 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD-- 879 (1636)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh--
Confidence 999999998887663 44566666667889999999999988877653 467788899998888887654321
Q ss_pred CCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcc-----hH--
Q 007818 309 KPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL-----TY-- 381 (588)
Q Consensus 309 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~-- 381 (588)
.-..|-..+..-+...|++..|..-|-+..+ |.+.+++|-..+-+++|.++-+.--..|.. .|
T Consensus 880 -~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwak 949 (1636)
T KOG3616|consen 880 -HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAK 949 (1636)
T ss_pred -hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHH
Confidence 1223555666667778888888776643332 355666777777777777766543322211 11
Q ss_pred -----------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcC
Q 007818 382 -----------------TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444 (588)
Q Consensus 382 -----------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 444 (588)
..-+.-.+..+-++-|..+-+-..+.. .|. .-..+..-+...|++++|-+.+-+..+...
T Consensus 950 siggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 950 SIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred hhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 111122233344444444444333322 122 112223334566778887766666554311
Q ss_pred C-------CCChHHH---------HHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 007818 445 L-------SPKLKHY---------SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508 (588)
Q Consensus 445 ~-------~~~~~~~---------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (588)
+ .|+..-. ..-+..+.+..+|..|..+-+.-....-+..+..-.+.....|++.+|+..+-++-
T Consensus 1027 ynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllran 1106 (1636)
T KOG3616|consen 1027 YNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRAN 1106 (1636)
T ss_pred ccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeecC
Confidence 1 0110000 01122334444455444444433211112334444444556777777777654432
Q ss_pred ccCCCCCchHHHHHHHHHccCChHHHHHHHH
Q 007818 509 ELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539 (588)
Q Consensus 509 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 539 (588)
.|+ ...+-|...+.|.+|+++-+
T Consensus 1107 --kp~------i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1107 --KPD------IALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred --CCc------hHHHHHHHhccChHHHHHHH
Confidence 232 12334556677777776544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.6e-07 Score=77.42 Aligned_cols=412 Identities=11% Similarity=0.040 Sum_probs=232.9
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHH-HHH
Q 007818 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCV---RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG-MVS 188 (588)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~ 188 (588)
...-+++.+..+++..++.+|++++..-.+ .+......|..+|....++..|-+.++++-.. .|...-|.. -..
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 334466777777888888888888865433 34556677777888888888888888888764 455555532 234
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHH--HHHhcCChhHHHHHHHhcCC-CCcchHHHHHHHHHhcCCHHHH
Q 007818 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMD--MYVKCGKLESAEEIFDSMVN-KTVVSCTTMIVGYAKFGFLDIA 265 (588)
Q Consensus 189 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a 265 (588)
.+.+.+.+..|..+...|... ++...-..-+. .....+++..+..++++... .+..+.+.......+.|+++.|
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence 556677777777777666543 11111111111 22346777777777777764 3444444444445567777777
Q ss_pred HHHhhhCCCC-Ccc---cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhH---HHHHH--H
Q 007818 266 RKIFDDLPEK-YVV---PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD---GIWIH--R 336 (588)
Q Consensus 266 ~~~~~~~~~~-~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~--~ 336 (588)
.+-|+...+- +.. .||..+ +..+.++++.|++...+++++|++.... ++ .|..-+ +..+= .
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGIDVRSVGNTL 233 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccCchhcccchH
Confidence 7777766542 211 244333 3345566777777777777776542111 00 000000 00000 0
Q ss_pred HHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007818 337 FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE-----RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411 (588)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 411 (588)
.+..++ -+..+|.-...+.+.|+++.|.+.+-.|+. -|++|...+.-.= ..+++.+..+-+.-+...+ +-
T Consensus 234 ~lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-Pf 308 (459)
T KOG4340|consen 234 VLHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PF 308 (459)
T ss_pred HHHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CC
Confidence 000000 012334444556788999999999999984 3677776554332 2345555666666666653 23
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHhHHHHHHHH
Q 007818 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG-RSGLLEEAEQLIRSMPMAADVVVWGALFFA 490 (588)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 490 (588)
...||..++-.||+..-++.|..++-+-....-.-.+...|+ |++++. ..-..++|.+-++.+...-....-...+..
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~v 387 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQV 387 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999988887655432200112333444 344443 445677777766655211111111111111
Q ss_pred -HHhhCC----HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 491 -CRLHGN----VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 491 -~~~~~~----~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
-.++.+ ...|+.-+++.++..- .+....++.|.+..++.-+.+.|..-.+--.+.
T Consensus 388 Qe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 388 QEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence 112222 2234445555555442 156778899999999999999999877654333
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-06 Score=85.92 Aligned_cols=403 Identities=14% Similarity=0.119 Sum_probs=254.2
Q ss_pred cCCCChhHHHHHHHHHHhCCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHH
Q 007818 109 GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV---RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV-TMI 184 (588)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~ 184 (588)
.+.-|..+|..+.-++...|++..+.+.|++..+ .....|+.+...+...|....|..+++.-....-.|+.. .+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3556778888888888889999999999988543 355678888889999999999999988765543234433 343
Q ss_pred HHHHHHh-ccCChhHHHHHHHHHHHh--CCC--CChhhHHHHHHHHHhc-----------CChhHHHHHHHhcCCC---C
Q 007818 185 GMVSACA-QLEDLNLGREIHWYISES--GLT--LTVPLANALMDMYVKC-----------GKLESAEEIFDSMVNK---T 245 (588)
Q Consensus 185 ~ll~~~~-~~~~~~~a~~~~~~~~~~--~~~--~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~---~ 245 (588)
..-+.|. +.+..+++..+...+... +.. ..+..+..+.-+|... ....++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3444454 467788888877777662 111 1233444444444321 1234566667776443 4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHhhhCCC----CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 007818 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPE----KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA-VTTVHCLS 320 (588)
Q Consensus 246 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~ 320 (588)
+...-.+.--|+-.++.+.|.+..++..+ .+...|..+.-.+...+++.+|+.+.+..... -|+. .-...-+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhh
Confidence 43333444456777888888887776544 34555888888889999999999988876653 1221 10001111
Q ss_pred HHcccCChhHHHHHHHHHHH---------------------hCC-------CCcchHHHHHHHHhHhcC---ChhHHHHH
Q 007818 321 ACSQLGALDDGIWIHRFIEK---------------------ENF-------NLNVVLGTALVDMYAKCG---NIAKALQV 369 (588)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~---------------------~~~-------~~~~~~~~~l~~~~~~~~---~~~~A~~~ 369 (588)
.-..-++.+++......+.. .|. .-.+.++..+.......+ ..+..+..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence 11123333333322222111 010 001122222222111111 11111111
Q ss_pred hccCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhc
Q 007818 370 FHEMPERN------SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443 (588)
Q Consensus 370 ~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (588)
+...+.|+ ...|......+.+.++.++|...+.+..+.. +-....|......+...|.+++|.+.|......
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l- 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL- 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc-
Confidence 11111222 1246667778889999999998888877642 444556777777888899999999999988752
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQ--LIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
-|.++.+..++..++.+.|+..-|.. ++..+ +..| +...|..+...+.+.|+.++|...|.-++++++.+|.
T Consensus 714 -dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 714 -DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred -CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 23447888999999999998887777 77766 5566 6789999999999999999999999999999887664
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.8e-07 Score=87.80 Aligned_cols=281 Identities=14% Similarity=0.061 Sum_probs=189.4
Q ss_pred HHhhcccCCCChhhHHhhcccCC--CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-c-
Q 007818 17 IAFCAISESKNLDYCTKILFNVQ--NPN-SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA-S- 91 (588)
Q Consensus 17 l~~~~~~~~g~~~~a~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~- 91 (588)
...+. ..|++++|+..++... -.| ........+.+.+.|+.++|..+|..+.. ..|+...|...+..+. .
T Consensus 11 ~~il~--e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~---rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 11 NSILE--EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID---RNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHH--HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHhhh
Confidence 34555 7899999999998754 334 44566778899999999999999999988 4577776655554444 1
Q ss_pred ----cCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHH-HHhccCCCC-CcccHHHHHHHHHhCCChhHHH
Q 007818 92 ----LGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC-NVFDESCVR-NLVSWNSLINGFVRSGFPREAI 165 (588)
Q Consensus 92 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~ 165 (588)
..+.+....+++.+.+.- |.......+.-.+.....+.... ..+...... -+..|+.+-..|....+.+-..
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 235677888888887654 33322222222222212222222 222222222 3355666666666555555555
Q ss_pred HHHHHhHHC----C----------CCCCc--chHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcC
Q 007818 166 RLFRDMQLE----R----------VEPDE--VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCG 229 (588)
Q Consensus 166 ~~~~~m~~~----~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 229 (588)
+++...... + -+|+. .++..+...|...|+.++|.++++..++..+. .+..|..-.+.+-..|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCC
Confidence 666555432 1 12333 24556677888999999999999999988432 4778899999999999
Q ss_pred ChhHHHHHHHhcCCC---CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCccc------------HHHHHHHHHhcCChH
Q 007818 230 KLESAEEIFDSMVNK---TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVP------------WNAIIGGYVQAKRSK 294 (588)
Q Consensus 230 ~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~l~~~~~~~~~~~ 294 (588)
++.+|.+.++..+.- |-..-+-....+.+.|+.++|.+++......+..+ ......+|.+.|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999888665 44455666777889999999999999887766433 234567888899988
Q ss_pred HHHHHHHHHHH
Q 007818 295 EALALFHEMQA 305 (588)
Q Consensus 295 ~a~~~~~~~~~ 305 (588)
.|++.|....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88877766554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-05 Score=78.99 Aligned_cols=415 Identities=11% Similarity=0.093 Sum_probs=235.8
Q ss_pred HHHHHHHHHhCCChhHHHHHhccCCC--CCcccH----HHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 007818 117 HNAVIHVFVSCGDLGLACNVFDESCV--RNLVSW----NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190 (588)
Q Consensus 117 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 190 (588)
+..+.+.|.+.|-+.+|++.+.++.. +.+..- -..+-.|...-.++.+++.++.|...++..+..+...+..-|
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky 688 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKY 688 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45566677777777777777765321 111100 011223444456788888888888888888877777776666
Q ss_pred hccCChhHHHHHHHHHHH-----------hCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC---------------
Q 007818 191 AQLEDLNLGREIHWYISE-----------SGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK--------------- 244 (588)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------- 244 (588)
...=-.+...++|+.... .++.-|+.+....+.+.++.|++.+.+++.++-.--
T Consensus 689 ~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~ 768 (1666)
T KOG0985|consen 689 HEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLT 768 (1666)
T ss_pred HHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcccc
Confidence 655455555555554432 135567777888899999999988888877654111
Q ss_pred ---------CcchHHHHHHHHHhcCCHHHHHHHhhhCCCC----------------------------CcccHHHHHHHH
Q 007818 245 ---------TVVSCTTMIVGYAKFGFLDIARKIFDDLPEK----------------------------YVVPWNAIIGGY 287 (588)
Q Consensus 245 ---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~l~~~~ 287 (588)
|...+..=+..|.-.++..+-++++-+-..+ +..+-..|..-.
T Consensus 769 DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~Ev 848 (1666)
T KOG0985|consen 769 DQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEV 848 (1666)
T ss_pred ccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHH
Confidence 1111211122222223333333333222111 112233344444
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHH-H---------HHHHHHHHhCC--------------
Q 007818 288 VQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDG-I---------WIHRFIEKENF-------------- 343 (588)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a-~---------~~~~~~~~~~~-------------- 343 (588)
-+.++..--...++.....|. .|..|++.+...|...++-.+. + .+=+...+.++
T Consensus 849 EkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~ 927 (1666)
T KOG0985|consen 849 EKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDL 927 (1666)
T ss_pred HhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcH
Confidence 555666666677777777774 5788899888887655443221 1 11111111111
Q ss_pred -----CCcchHHHHHHHHhHhcCChhHHH-----------HHhccC----C--CCCcchHHHHHHHHHhcCChHHHHHHH
Q 007818 344 -----NLNVVLGTALVDMYAKCGNIAKAL-----------QVFHEM----P--ERNSLTYTAIIGGLALHGKALDAISYF 401 (588)
Q Consensus 344 -----~~~~~~~~~l~~~~~~~~~~~~A~-----------~~~~~~----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~ 401 (588)
...-..|....+.+.+..+.+-=. .+++.. . ..|+...+..+.++...+-+.+-++++
T Consensus 928 elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELL 1007 (1666)
T KOG0985|consen 928 ELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELL 1007 (1666)
T ss_pred HHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHH
Confidence 011123334444444444433211 122222 1 247777788888888888888888888
Q ss_pred HHHHHCC--CCCCHHHHHHHHHHhcc---------------------------CCchHHHHHHHHHhhhhcCCCCChHHH
Q 007818 402 SEMIGVG--LMPDEITFLGILSACCH---------------------------GGLVDEGRKYFAQMSSIFRLSPKLKHY 452 (588)
Q Consensus 402 ~~~~~~~--~~p~~~~~~~l~~~~~~---------------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~ 452 (588)
++..-.. +.-+...-+.++-...+ .+-+++|..+|++.. .+....
T Consensus 1008 EKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~------~n~~A~ 1081 (1666)
T KOG0985|consen 1008 EKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD------MNVSAI 1081 (1666)
T ss_pred HHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc------ccHHHH
Confidence 8876432 11111122222222222 233344444443331 223333
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChH
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (588)
+.|++ ..+..+.|.++-++. ..+..|..+..+-.+.|...+|+..|-++ +||..|...+.+..+.|+|+
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~---n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERC---NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhh---CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHH
Confidence 33333 334555555555554 35678999999999999999999988765 68899999999999999999
Q ss_pred HHHHHHHHHHhcCCccC
Q 007818 533 EAGKVRKMMEERGVEKT 549 (588)
Q Consensus 533 ~A~~~~~~~~~~~~~~~ 549 (588)
+-.+++..++++.-+|.
T Consensus 1151 dLv~yL~MaRkk~~E~~ 1167 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPY 1167 (1666)
T ss_pred HHHHHHHHHHHhhcCcc
Confidence 99999998887765543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.2e-08 Score=82.39 Aligned_cols=192 Identities=10% Similarity=0.014 Sum_probs=140.6
Q ss_pred HHHHHHhHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 007818 351 TALVDMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427 (588)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 427 (588)
..|.-.|...|++..|..-+++..+. +..+|..+...|.+.|..+.|.+.|++..+.. +-+..+.+....-+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 45666778888888888888877653 33467777778888888888888888877753 334456666777777888
Q ss_pred chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHH
Q 007818 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAM 505 (588)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (588)
.+++|...|++......+..-..+|..++-+..+.|+++.|.+.|++. ...| .+.+...+.....+.|++..|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 888888888888776444444677778888888888888888888775 3444 35566777777778888888888888
Q ss_pred HHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 506 KLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
+.....+.....+-..+.+-.+.|+-+.|-++=.++.+
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 88777776777777777777788888877777666643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.5e-07 Score=85.76 Aligned_cols=249 Identities=12% Similarity=0.012 Sum_probs=157.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHH-------H
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT-------A 352 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~ 352 (588)
...+.....+..+++.|++.+....+.. -+..-++....++...|.+..+........+.|-. ...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 5556677777788888888888887753 34444455566677777777666665555444321 111122 2
Q ss_pred HHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHH
Q 007818 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDE 431 (588)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~ 431 (588)
+..+|.+.++++.+...|.+...+... -....+....++++...+...- +.|... -...-...+.+.|++..
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence 334566677788888888775432111 1112223344555555444433 233332 22233566778899999
Q ss_pred HHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
|...|.++.+. .|.|...|....-+|.+.|.+..|++-.+.. ...|+ ...|.--+.++....+++.|...|.++++
T Consensus 377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998874 3666888888888999999988888776654 34443 44555556666777889999999999999
Q ss_pred cCCCCCchHHHHHHHHHccCChHHHHHHHHH
Q 007818 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 510 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
.+|++..+...+.++...........++.++
T Consensus 455 ~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 455 LDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred cCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 9998888888777777654434444444444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-07 Score=87.52 Aligned_cols=213 Identities=16% Similarity=0.070 Sum_probs=136.6
Q ss_pred CChhHHHHHHHHHHHhC-CCC--cchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 007818 326 GALDDGIWIHRFIEKEN-FNL--NVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAIS 399 (588)
Q Consensus 326 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 399 (588)
+..+.++..+.++.... ..| ....+..+...|...|+.++|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34555666665555432 122 234566777778888888888888877653 345678888888888888888888
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 007818 400 YFSEMIGVGLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-- 476 (588)
Q Consensus 400 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 476 (588)
.|++..+. .|+ ..++..+..++...|++++|.+.++...+. .|+..........+...+++++|.+.+++..
T Consensus 120 ~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 88888874 444 456777777788888888888888888764 2332212222223445677888888886542
Q ss_pred CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHh-------ccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 477 MAADVVVWGALFFACRLHGNVSIGERAAMKLL-------ELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 477 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
..|+...+ . ......|+...+ ..+..+. ++.|+.+.+|..++.++.+.|++++|...|+++.+.+++
T Consensus 195 ~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 195 LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 22332222 1 222234444332 2333332 445666678888888888888888888888888876643
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.1e-07 Score=84.72 Aligned_cols=413 Identities=13% Similarity=0.067 Sum_probs=230.9
Q ss_pred HHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChhH
Q 007818 87 KVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPRE 163 (588)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 163 (588)
.+....|+++.|..+|...+.... +|...|..-..+|+..|++++|++=-.+ +.+.....|.-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 345577888888888888887663 4677788888888888888887765543 344455678888888888888888
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHH-----HHHHhcCChhHHHHHH
Q 007818 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALM-----DMYVKCGKLESAEEIF 238 (588)
Q Consensus 164 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~ 238 (588)
|+..|.+-.+.. +-+...+.-+..++ ..+.+. +. .-.++..+..+. +.+...-.+-. ++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~---~l 152 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVK---IL 152 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHH---HH
Confidence 888887766542 22333344444443 111000 00 001122222111 11111111111 11
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCC------------CCcccHHHHHHHHHhcCChHHHHHHHHHHHH-
Q 007818 239 DSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE------------KYVVPWNAIIGGYVQAKRSKEALALFHEMQA- 305 (588)
Q Consensus 239 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~- 305 (588)
..+ +.++...+ .+.....+..+.-.+..... +...+- .+.. .......++.+
T Consensus 153 ~~~-~~~p~~l~----~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-------~~~~---~~~~~~~d~~ee 217 (539)
T KOG0548|consen 153 EII-QKNPTSLK----LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-------KQEH---NGFPIIEDNTEE 217 (539)
T ss_pred HHh-hcCcHhhh----cccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-------cccC---CCCCccchhHHH
Confidence 111 11111110 01110111111111111100 000000 0000 00000000000
Q ss_pred CCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCc---c---
Q 007818 306 TGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNS---L--- 379 (588)
Q Consensus 306 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~--- 379 (588)
....--..-...+.++..+..+++.+.+-+....... .+..-++....+|...|.+......-....+... .
T Consensus 218 ~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k 295 (539)
T KOG0548|consen 218 RRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK 295 (539)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH
Confidence 0000011224455666667777777777777776665 4555567777778888877776665555443211 1
Q ss_pred ----hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCCh-HHHHH
Q 007818 380 ----TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL-KHYSC 454 (588)
Q Consensus 380 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ 454 (588)
.+..+..+|.+.++++.++..|.+.......|+..+ +....+++....+... -+.|.. .-...
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~ 363 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEERE 363 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHH
Confidence 122234456667788888888888666544443321 2223344444333332 223332 12223
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChH
Q 007818 455 MVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532 (588)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (588)
-...+.+.|++..|...|.++. ..| |...|.....+|.+.|.+..|+.-.++.++++|+....|..=+.++....+|+
T Consensus 364 kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~yd 443 (539)
T KOG0548|consen 364 KGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYD 443 (539)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 3667789999999999999873 335 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q 007818 533 EAGKVRKMMEERG 545 (588)
Q Consensus 533 ~A~~~~~~~~~~~ 545 (588)
+|.+.|++..+.+
T Consensus 444 kAleay~eale~d 456 (539)
T KOG0548|consen 444 KALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999888765
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-06 Score=75.68 Aligned_cols=190 Identities=12% Similarity=-0.004 Sum_probs=134.2
Q ss_pred hhHHHHhhcccCCCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHH-HHH
Q 007818 13 PSRLIAFCAISESKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL-FKV 88 (588)
Q Consensus 13 ~~~ll~~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~ 88 (588)
++..+.-.. +..++++|++++.... +.+....+.+...|.+..++..|-+-|+++.. ..|...-|... .+.
T Consensus 13 ftaviy~lI--~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q---l~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 13 FTAVVYRLI--RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ---LHPELEQYRLYQAQS 87 (459)
T ss_pred hHHHHHHHH--HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHH
Confidence 445555455 7788999999887543 34666788888899999999999999999977 55766555433 355
Q ss_pred HHccCChhhHHHHHHHHHHhcCCCChhHHHHHH----HHHHhCCChhHHHHHhccCC-CCCcccHHHHHHHHHhCCChhH
Q 007818 89 CASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI----HVFVSCGDLGLACNVFDESC-VRNLVSWNSLINGFVRSGFPRE 163 (588)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 163 (588)
+-+.+.+..|.++...|.+. + ...+..+ ......+++..+..++++.+ +.+..+.+...-...+.|+++.
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~--~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---P--ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---H--HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 66788888899988877652 2 2222222 12234788888999998877 3556666666666678899999
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCC
Q 007818 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTL 213 (588)
Q Consensus 164 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 213 (588)
|.+-|+...+-+---....|+..+ +..+.|+.+.|.+...++++.|+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhc
Confidence 999998887654333445666554 4456788899999999998887763
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-06 Score=87.96 Aligned_cols=129 Identities=12% Similarity=-0.005 Sum_probs=66.1
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHH----HHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHH
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS----CMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 489 (588)
..|........+.+.+..|.+...++..-.....+...|+ .+.+.+...|.++.|..-+.....+.+......-+.
T Consensus 968 fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~ 1047 (1238)
T KOG1127|consen 968 FAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLT 1047 (1238)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHH
Confidence 3444444444444555544444444322111122223333 233445555666666555544433333333332222
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 490 ACRLHGNVSIGERAAMKLLELDPQDS---GIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
. .-.|+++++...|++++.+.-.+. .....++++....|..+.|...+=+...
T Consensus 1048 l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1048 L-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred H-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 2 345778888888888887654432 3445566666777777777776555543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.3e-08 Score=88.34 Aligned_cols=156 Identities=17% Similarity=0.145 Sum_probs=95.9
Q ss_pred HHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc----cCCch
Q 007818 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC----HGGLV 429 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~ 429 (588)
...+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. ..+.+
T Consensus 109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhH
Confidence 34556677778777777665 44555666677777788888888888877764 3333 3333333332 23357
Q ss_pred HHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCH-HHHHHHHHH
Q 007818 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNV-SIGERAAMK 506 (588)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~-~~A~~~~~~ 506 (588)
.+|..+|+++.+ .+++++.+.+.++.+....|++++|.+++++. ...| ++.++..++-.....|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 778888888766 45567777777777777777777777777664 2333 455555665555555655 556667777
Q ss_pred HhccCCCCCc
Q 007818 507 LLELDPQDSG 516 (588)
Q Consensus 507 ~~~~~p~~~~ 516 (588)
+....|++|.
T Consensus 262 L~~~~p~h~~ 271 (290)
T PF04733_consen 262 LKQSNPNHPL 271 (290)
T ss_dssp CHHHTTTSHH
T ss_pred HHHhCCCChH
Confidence 7777776553
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.2e-08 Score=92.94 Aligned_cols=244 Identities=12% Similarity=0.057 Sum_probs=158.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhH
Q 007818 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365 (588)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (588)
-+.-.|++..++.-.+ .....-..+......+.+++...|+++.++ ..+.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445677777765554 222211122334445666677777655433 3333332 5555555555544444345556
Q ss_pred HHHHhccCC-CC----CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhh
Q 007818 366 ALQVFHEMP-ER----NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440 (588)
Q Consensus 366 A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 440 (588)
+..-+++.. ++ +..........+...|++++|+++++.. .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 665555433 22 2222233335567789999999988642 456777788899999999999999999997
Q ss_pred hhcCCCCChHHHHHHHHHHH----hcCChHHHHHHHHhCCC--CCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 441 SIFRLSPKLKHYSCMVDLLG----RSGLLEEAEQLIRSMPM--AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
+. ..| .+...++.++. -...+.+|..+|+++.. .+++.+.+.++.+....|++++|...+.++++.+|++
T Consensus 159 ~~---~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 159 QI---DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp CC---SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred hc---CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 53 334 33444555443 23369999999999853 3677888888888999999999999999999999999
Q ss_pred CchHHHHHHHHHccCCh-HHHHHHHHHHHhc
Q 007818 515 SGIYVLLANMYRDSNMW-EEAGKVRKMMEER 544 (588)
Q Consensus 515 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 544 (588)
+.++.+++-+....|+. +.+.++++++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999998 6788888887653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.4e-07 Score=78.67 Aligned_cols=294 Identities=15% Similarity=0.072 Sum_probs=159.0
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHH---HHHHhcCCHHHHHHHhhhCCCCCcccHHHH---HHHHHhcCCh
Q 007818 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI---VGYAKFGFLDIARKIFDDLPEKYVVPWNAI---IGGYVQAKRS 293 (588)
Q Consensus 220 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l---~~~~~~~~~~ 293 (588)
.+...+...|++..|+.-|...++.|+..|.++. ..|...|+-..|..-|....+..+..+.+- ...+.++|.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence 3444444455555555555555555544444332 223344444444443433333222222221 1234455555
Q ss_pred HHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh
Q 007818 294 KEALALFHEMQATGIKPD--------------AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359 (588)
Q Consensus 294 ~~a~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (588)
++|..-|+...+.....+ .......+..+...|+...|+.....+.+.. +.+...+..-..+|..
T Consensus 123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence 555555555554321000 0112223334455667777777776666543 3355666666777777
Q ss_pred cCChhHHHHHhccCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH----HHHH---------HHHh
Q 007818 360 CGNIAKALQVFHEMP---ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT----FLGI---------LSAC 423 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~----~~~l---------~~~~ 423 (588)
.|++..|..=++... ..+..++--+...+...|+.+.++...++-++. .||... |..+ +...
T Consensus 202 ~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 777777766554443 445666666666777777777777777776663 555431 1111 1122
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCC
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPK-----LKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGN 496 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~ 496 (588)
...++|.++.+..+...+. .|. ...+..+-.++...|++.+|++...++ ...|+ +.++..-..+|.-...
T Consensus 280 ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 3456666666666666653 222 233445556666677777777766654 34453 6666666677777777
Q ss_pred HHHHHHHHHHHhccCCCCCchHH
Q 007818 497 VSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
++.|+.-|+++.+.+|+|..+-.
T Consensus 357 YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHHHHHHHHhcCcccHHHHH
Confidence 77777777777777776654433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-08 Score=94.27 Aligned_cols=117 Identities=15% Similarity=0.068 Sum_probs=102.2
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAA 504 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 504 (588)
.......++|-.+....+..+|+.+...|.-.|.-.|++++|.+.|+.+ ..+| |...|+.+..+++...+.++|+..|
T Consensus 408 ~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY 487 (579)
T KOG1125|consen 408 SHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHH
Confidence 3445566666666655465688999999999999999999999999986 4566 7889999999999999999999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 505 MKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 505 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+++++.|.-..+..+|+..|...|.|++|.++|=.++.
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888754
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.8e-08 Score=82.45 Aligned_cols=148 Identities=11% Similarity=0.063 Sum_probs=111.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCCh
Q 007818 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL 465 (588)
Q Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (588)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 456777777765444322211 11 012235667788888887776 4466788899999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHhHHHHHHHHH-HhhCC--HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHH
Q 007818 466 EEAEQLIRSM-PMAA-DVVVWGALFFAC-RLHGN--VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 466 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887 3455 566777777764 56676 59999999999999999999999999999999999999999999
Q ss_pred HHhcCCc
Q 007818 541 MEERGVE 547 (588)
Q Consensus 541 ~~~~~~~ 547 (588)
+.+...+
T Consensus 170 aL~l~~~ 176 (198)
T PRK10370 170 VLDLNSP 176 (198)
T ss_pred HHhhCCC
Confidence 9876543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.9e-06 Score=81.13 Aligned_cols=257 Identities=11% Similarity=-0.009 Sum_probs=150.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHcccCChhHHHHHHHHHHHhCCCCc-chHHHHHHHHhHhcC
Q 007818 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVH---CLSACSQLGALDDGIWIHRFIEKENFNLN-VVLGTALVDMYAKCG 361 (588)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 361 (588)
.+...|++++|.+.+++..+.. +.|...+.. ........+..+.+.+.+.. .....|+ ......+...+...|
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G 128 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG 128 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence 4556778888888888877652 223323331 11111223444444444443 1112222 233345556778888
Q ss_pred ChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhccCCchHHHHHH
Q 007818 362 NIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDE--ITFLGILSACCHGGLVDEGRKY 435 (588)
Q Consensus 362 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~~ 435 (588)
++++|...+++..+ .+...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|..+
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 88888888887763 3455677788888888899999888888776432 1222 2355677788888999999999
Q ss_pred HHHhhhhcCCCCChHHH-H--HHHHHHHhcCChHHHHHH---HHhCCCC-C---CHhHHHHHHHHHHhhCCHHHHHHHHH
Q 007818 436 FAQMSSIFRLSPKLKHY-S--CMVDLLGRSGLLEEAEQL---IRSMPMA-A---DVVVWGALFFACRLHGNVSIGERAAM 505 (588)
Q Consensus 436 ~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~-~---~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (588)
+++........+..... + .++..+...|....+.++ ....... | ..........++...|+.+.|...+.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 88875421111222111 1 233334444533333332 1111101 1 11122245555677888998988888
Q ss_pred HHhccCC---------CCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 506 KLLELDP---------QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 506 ~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.+....- .........+.++...|++++|.+.+.......
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7754221 134455677888899999999999999997654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-07 Score=84.55 Aligned_cols=181 Identities=9% Similarity=-0.030 Sum_probs=112.5
Q ss_pred cchHHHHHHHHhHhcCChhHHHHHhccCCC--CC-c---chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----H
Q 007818 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPE--RN-S---LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI----T 415 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~ 415 (588)
....+..+...+...|++++|...|+++.. |+ + ..+..+..++...|++++|+..++++.+.. |+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHH
Confidence 344555666667777777777777776653 21 1 245556667777777777777777776642 2211 3
Q ss_pred HHHHHHHhccC--------CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHH
Q 007818 416 FLGILSACCHG--------GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGAL 487 (588)
Q Consensus 416 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 487 (588)
+..+..++... |++++|.+.++.+... .+.+...+..+..... ..... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 44444444433 5666777777777653 1222222222211100 00000 0011244
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQDS---GIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...+...|++.+|+..++++++..|+++ .++..++.++.+.|++++|..+++.+....
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5567889999999999999999987654 688999999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-06 Score=74.34 Aligned_cols=309 Identities=10% Similarity=0.037 Sum_probs=195.8
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHH---HHHhccCChhHHHHHHHHHHHhCCCCChh-hHH
Q 007818 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV---SACAQLEDLNLGREIHWYISESGLTLTVP-LAN 219 (588)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 219 (588)
++.-.-.+...+...|++..|+.-|...++. |+..|..+. ..|...|+...|..-+...++. +||-. ...
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 3344445666677777777787777776642 444444443 3566677777777777766665 33422 112
Q ss_pred HHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHH
Q 007818 220 ALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALAL 299 (588)
Q Consensus 220 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 299 (588)
--...+.+.|.+++|..-|+.+.+.++.. +....++.+....++-+. ....+..+...|+...|++.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~ 177 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEM 177 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHH
Confidence 22335567777777777777775543310 000111111111111111 12234456677888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcc
Q 007818 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSL 379 (588)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 379 (588)
...+.+. .+.|...+..-..+|...|.+..|+.=++...+.... +...+-.+...+...|+.+.++..+++-.+-|+.
T Consensus 178 i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 178 ITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 8888875 3567777777778888888888888777777665433 4445555667777888888888877776643221
Q ss_pred ------hHHHH---------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhccCCchHHHHHHHHHhhh
Q 007818 380 ------TYTAI---------IGGLALHGKALDAISYFSEMIGVGLMPDEI---TFLGILSACCHGGLVDEGRKYFAQMSS 441 (588)
Q Consensus 380 ------~~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~ 441 (588)
.|..| +......+++.++++..+...+........ .+..+-.++...+++.+|++...++..
T Consensus 256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~ 335 (504)
T KOG0624|consen 256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD 335 (504)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence 12111 223456788899999988887763221222 455566777888999999999999985
Q ss_pred hcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007818 442 IFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSMP 476 (588)
Q Consensus 442 ~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (588)
+.|+ ..++---..+|.-..+++.|+.-|+.+.
T Consensus 336 ---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 336 ---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred ---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3454 8888888889999999999999998873
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-05 Score=76.45 Aligned_cols=200 Identities=13% Similarity=-0.022 Sum_probs=122.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCccc-HHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHH-
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT-YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA- 119 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 119 (588)
....|..+...+...|+.+.+.+.+....+.....++... .......+...|++++|...+++..+.. |.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 3445666667777777777777777766552222222211 1112234457788888888888888764 333333331
Q ss_pred --HHHHHHhCCChhHHHHHhccCCCCCc---ccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccC
Q 007818 120 --VIHVFVSCGDLGLACNVFDESCVRNL---VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194 (588)
Q Consensus 120 --l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 194 (588)
........+..+.+.+.++...+.+. .....+...+...|++++|.+.+++..+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 11112224555566666554322222 233344557778888888888888888763 334556677777888888
Q ss_pred ChhHHHHHHHHHHHhCCC-CCh--hhHHHHHHHHHhcCChhHHHHHHHhcCC
Q 007818 195 DLNLGREIHWYISESGLT-LTV--PLANALMDMYVKCGKLESAEEIFDSMVN 243 (588)
Q Consensus 195 ~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 243 (588)
++++|...++........ ++. ..+..+...+...|++++|..+++....
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 888888888887765322 222 2345677888888888888888888653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=0.0001 Score=69.66 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=76.1
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHH
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRP-DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (588)
+-|..+|+.||+-+..+ .++++.+.++++.. ..| ....|..-+..-.+.++++.++++|.+-+..- .+...|.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~---~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~ 90 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN---VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWK 90 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc---cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHH
Confidence 45777888888877666 78888888888765 334 34567777777778888888888888877654 3455666
Q ss_pred HHHHHHHh-CCChhHHHHHh--------cc--CCCCCcccHHHHHHH---------HHhCCChhHHHHHHHHhHH
Q 007818 119 AVIHVFVS-CGDLGLACNVF--------DE--SCVRNLVSWNSLING---------FVRSGFPREAIRLFRDMQL 173 (588)
Q Consensus 119 ~l~~~~~~-~~~~~~A~~~~--------~~--~~~~~~~~~~~l~~~---------~~~~~~~~~a~~~~~~m~~ 173 (588)
..++.-.+ +|+...+.... ++ +...+...|+..+.. +..+.+++...+++.++..
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 55554333 33333322211 11 222333445444332 3344566667777777664
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=76.63 Aligned_cols=94 Identities=9% Similarity=-0.199 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
+..+...+...|++++|.+.|+.+ ...| +...+..+..++...|++++|+..++++++++|+++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 445566666777777777777665 2333 55666666667777777777777777777777777777777777777777
Q ss_pred ChHHHHHHHHHHHhcC
Q 007818 530 MWEEAGKVRKMMEERG 545 (588)
Q Consensus 530 ~~~~A~~~~~~~~~~~ 545 (588)
++++|.+.+++..+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7777777777776543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.9e-06 Score=82.06 Aligned_cols=177 Identities=12% Similarity=0.034 Sum_probs=107.5
Q ss_pred CChhhHHhhcccCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCC-CcccHHHHHHHHHccCChhhHHHH
Q 007818 26 KNLDYCTKILFNVQNPN---SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRP-DNFTYPLLFKVCASLGLRFLGYEI 101 (588)
Q Consensus 26 g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 101 (588)
.+...|...|-+..+.| ...|..|...|+..-+..+|..-|....+ +.+ +..........+++..+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe---LDatdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE---LDATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCchhhhhHHHHHHHhhccccHHHHHHH
Confidence 44555665554433222 23577777777777777788888877765 333 345566677777888888888777
Q ss_pred HHHHHHhcC-CCChhHHHHHHHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCC
Q 007818 102 FGHVLKLGF-DVDMYVHNAVIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVE 177 (588)
Q Consensus 102 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 177 (588)
.-...+... .....-|..+--.|...++...|..-|+. ..+.|...|..+..+|.+.|++..|+++|.+.... .
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 433333221 01111222333445666777777777775 34456777788888888888888888888777653 3
Q ss_pred CCcchHHHHHH--HHhccCChhHHHHHHHHHHH
Q 007818 178 PDEVTMIGMVS--ACAQLEDLNLGREIHWYISE 208 (588)
Q Consensus 178 p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~ 208 (588)
|+. +|...-. .-+..|...++...+..+..
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 443 3332222 23456777777777766654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-05 Score=77.21 Aligned_cols=163 Identities=13% Similarity=0.061 Sum_probs=87.3
Q ss_pred CCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHH
Q 007818 24 ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 103 (588)
..|.+++|..++.+.+. |..|=+.|...|.+++|.++-+.-.+ +. =..||......+-..++.+.|.+.|+
T Consensus 812 eLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR---iH-Lr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR---IH-LRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc---ee-hhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 46677777777665443 44444555566777777666554322 11 12345455555555566666665554
Q ss_pred HH----------HHhcC---------CCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHH
Q 007818 104 HV----------LKLGF---------DVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREA 164 (588)
Q Consensus 104 ~~----------~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 164 (588)
.. +...+ ..|...|.--...+-..|+.+.|+..+... .-|-.+++..+-.|+.++|
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhheeeEeeccCchHH
Confidence 32 11110 122333333334444567777777777653 2344555556666666666
Q ss_pred HHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHH
Q 007818 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206 (588)
Q Consensus 165 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 206 (588)
-++-++ ..|......+.+.|-..|++.+|..+|-..
T Consensus 958 a~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 958 ARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666544 224444555666666666666666666544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-05 Score=85.46 Aligned_cols=297 Identities=10% Similarity=-0.034 Sum_probs=137.2
Q ss_pred hhhHHHHHHHHHHhcCC--C-C----hhHHHHHHHHHHhC----CChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhH
Q 007818 95 RFLGYEIFGHVLKLGFD--V-D----MYVHNAVIHVFVSC----GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163 (588)
Q Consensus 95 ~~~a~~~~~~~~~~~~~--~-~----~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 163 (588)
.+.+..+++.+...|+- + + .+.|+.++.-+.+. .+.+....+ .......+...|++.+
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~l-----------h~raa~~~~~~g~~~~ 359 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPEL-----------HRAAAEAWLAQGFPSE 359 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHH-----------HHHHHHHHHHCCCHHH
Confidence 34467788888877741 1 1 24456666555432 122222222 2222334555566655
Q ss_pred HHHHHHHhHHCCCCCCc-chHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcC
Q 007818 164 AIRLFRDMQLERVEPDE-VTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMV 242 (588)
Q Consensus 164 a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 242 (588)
|......... .+.. .............|+.+.+...+..+.......++.........+...|+++++...+....
T Consensus 360 Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~ 436 (903)
T PRK04841 360 AIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAE 436 (903)
T ss_pred HHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5544333211 0000 01111122334456666666665554222112223333444555566778888777776542
Q ss_pred C----CC---c-c----hHHHHHHHHHhcCCHHHHHHHhhhCCC----CCc----ccHHHHHHHHHhcCChHHHHHHHHH
Q 007818 243 N----KT---V-V----SCTTMIVGYAKFGFLDIARKIFDDLPE----KYV----VPWNAIIGGYVQAKRSKEALALFHE 302 (588)
Q Consensus 243 ~----~~---~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 302 (588)
. .+ . . ....+...+...|++++|...++.... .+. ...+.+...+...|++++|...+.+
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~ 516 (903)
T PRK04841 437 QELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQ 516 (903)
T ss_pred HhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 11 1 0 111122334456677777666665432 111 1134455556667777777777777
Q ss_pred HHHCCC---CC--CHHHHHHHHHHHcccCChhHHHHHHHHHHHh----CCCC---cchHHHHHHHHhHhcCChhHHHHHh
Q 007818 303 MQATGI---KP--DAVTTVHCLSACSQLGALDDGIWIHRFIEKE----NFNL---NVVLGTALVDMYAKCGNIAKALQVF 370 (588)
Q Consensus 303 ~~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~ 370 (588)
.....- .+ ...++..+...+...|+++.|...+++.... +... ....+..+...+...|++++|...+
T Consensus 517 al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 596 (903)
T PRK04841 517 TEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCA 596 (903)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 654211 11 1123334445566677777777766554432 1110 1112233344455556666666555
Q ss_pred ccCCC------C--CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007818 371 HEMPE------R--NSLTYTAIIGGLALHGKALDAISYFSEMI 405 (588)
Q Consensus 371 ~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 405 (588)
++... + ....+..+...+...|++++|...+++..
T Consensus 597 ~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~ 639 (903)
T PRK04841 597 RKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLE 639 (903)
T ss_pred HHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54421 0 01122233344455555555555555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.6e-07 Score=75.80 Aligned_cols=126 Identities=18% Similarity=0.101 Sum_probs=66.4
Q ss_pred HHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhh
Q 007818 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLH 494 (588)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 494 (588)
..+-..+.-.|+-+....+...... ..+.+......++....+.|++.+|...+++.. .++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 3334444445555555555444433 223334444445555555555555555555542 223555555555555555
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
|+++.|...|.+++++.|++|.+.++++-.|.-.|+++.|..++......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 55555555555555555555555555555555555555555555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.0003 Score=70.83 Aligned_cols=215 Identities=14% Similarity=0.151 Sum_probs=128.9
Q ss_pred CCCChhhHHhhcccCC--CCChhhHHHHHHH--HHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHH
Q 007818 24 ESKNLDYCTKILFNVQ--NPNSFSWNVAIRG--FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGY 99 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 99 (588)
..+++..|....+.+. .|+.. |..++.+ +.+.|+.++|..+++.... .+. .|..|...+-.+|...++.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~-~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYG-LKG-TDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhcc-CCC-CchHHHHHHHHHHHHHhhhhHHH
Confidence 4567777777766654 44433 3334443 4678888888888877654 212 26667888888888888888888
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHhCCChh----HHHHHhccCCCCCcccHHHHHHHHHhC-CCh---------hHHH
Q 007818 100 EIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG----LACNVFDESCVRNLVSWNSLINGFVRS-GFP---------REAI 165 (588)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~---------~~a~ 165 (588)
.++++..+.. |+......+..+|++.+++. .|.++++..++.-...|+ +++..... ... .-|.
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHH
Confidence 8888888754 56777777777888876654 466666655443333343 34433322 122 2244
Q ss_pred HHHHHhHHCCCCCC-cchHHHHHHHHhccCChhHHHHHHH-HHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCC
Q 007818 166 RLFRDMQLERVEPD-EVTMIGMVSACAQLEDLNLGREIHW-YISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN 243 (588)
Q Consensus 166 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 243 (588)
+.++.+.+.+-+.. ..-...-.......|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 44555544431111 1111111223445677888888883 333333344555556777888888888888877777755
Q ss_pred C
Q 007818 244 K 244 (588)
Q Consensus 244 ~ 244 (588)
.
T Consensus 255 k 255 (932)
T KOG2053|consen 255 K 255 (932)
T ss_pred h
Confidence 4
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-06 Score=90.53 Aligned_cols=199 Identities=14% Similarity=0.082 Sum_probs=145.9
Q ss_pred cchHHHHHHHHhHhcCChhHHHHHhccCCCC--------CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 007818 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPER--------NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFL 417 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 417 (588)
+...|-..+......++.++|.++.++.... -...|.++++.....|.-+...++|+++.+- --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3455666777777778888888877776531 2346777777777777777788888888773 22234677
Q ss_pred HHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CHhHHHHHHHHHHh
Q 007818 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA---DVVVWGALFFACRL 493 (588)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~ 493 (588)
.|...|.+.+..++|.++++.|.++++ .....|..+++.+.+..+-+.|..++.++ ..-| ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 788888888888888888888888554 56777888888888888888888888765 2223 23344444445567
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
.|+.+++..+|+..+.-.|.....|..+++.-.+.|+.+.++.+|+++...++++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 8888888888888888888888888888888888888888888888888777654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.5e-07 Score=74.44 Aligned_cols=123 Identities=9% Similarity=-0.015 Sum_probs=101.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 007818 399 SYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PM 477 (588)
Q Consensus 399 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 477 (588)
.++++..+. .|+. +......+...|++++|...|+.+.. --+.+...+..+..++.+.|++++|...|+++ ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 455555553 4553 44567788899999999999999986 44557888999999999999999999999987 34
Q ss_pred CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc
Q 007818 478 AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 478 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (588)
.| +...+..+..++...|++++|+..++++++..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 45 677888888899999999999999999999999999999888876643
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-06 Score=87.73 Aligned_cols=138 Identities=11% Similarity=0.045 Sum_probs=85.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHH
Q 007818 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455 (588)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 455 (588)
++..+..|.....+.|++++|..+++...+. .|+.. ....+..++.+.+++++|....++... .-+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3556666666666677777777777766663 45443 455556666666777777776666665 333445556666
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchH
Q 007818 456 VDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (588)
..++.+.|++++|.++|+++. ..| +...+..+..++...|+.++|...|+++++...+-...|
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 666667777777777776653 223 255666666666666777777777777766654433333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.8e-07 Score=72.54 Aligned_cols=97 Identities=14% Similarity=-0.000 Sum_probs=86.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
+......+...+...|++++|..+|+-+. ..| +...|..+..++...|++++|+..|.++..++|+||..+.+++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 35556677777889999999999999873 455 6778899999999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHhc
Q 007818 526 RDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 526 ~~~g~~~~A~~~~~~~~~~ 544 (588)
...|+.+.|++.|+.....
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.4e-06 Score=75.92 Aligned_cols=188 Identities=10% Similarity=0.004 Sum_probs=116.5
Q ss_pred ChhHHHHHhccCCC---CCcchHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 007818 362 NIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKA--LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436 (588)
Q Consensus 362 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (588)
++++++..++++.+ ++..+|+.....+.+.|+. ++++.+++.+.+.. +-|..+|.....++...|+++++++.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34555555555443 2333444443344444442 55677777777653 345567777777777777788888888
Q ss_pred HHhhhhcCCCCChHHHHHHHHHHHhc---CCh----HHHHHHHHh-CCCCC-CHhHHHHHHHHHHhh----CCHHHHHHH
Q 007818 437 AQMSSIFRLSPKLKHYSCMVDLLGRS---GLL----EEAEQLIRS-MPMAA-DVVVWGALFFACRLH----GNVSIGERA 503 (588)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~----~~~~~A~~~ 503 (588)
+++.+. -+-+...|+.....+.+. |.. +++.++..+ +...| +...|..+...+... +...+|...
T Consensus 166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 887763 234455566555554443 222 345555533 34445 456677666666553 345668888
Q ss_pred HHHHhccCCCCCchHHHHHHHHHccC------------------ChHHHHHHHHHHHhcCCccCCceeE
Q 007818 504 AMKLLELDPQDSGIYVLLANMYRDSN------------------MWEEAGKVRKMMEERGVEKTPGCSS 554 (588)
Q Consensus 504 ~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~~~~~~~~~~~~~ 554 (588)
+.++...+|+++.++..|+++|.... ..++|.++++.+. ...|-+..+|
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 88888889999999999999998642 3477888888883 4555555554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-06 Score=83.53 Aligned_cols=212 Identities=13% Similarity=0.004 Sum_probs=165.1
Q ss_pred HHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC--CCCcchHHHHHHHHHhcCC
Q 007818 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP--ERNSLTYTAIIGGLALHGK 393 (588)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 393 (588)
..+...+...|-...|..+++++.. +..++.+|...|+..+|..+..+-. +|++..|-.+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 3455566677777788888775543 4567888999999888888876655 3677788888877777767
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 007818 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIR 473 (588)
Q Consensus 394 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (588)
+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+. .+....+|..+.-+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 78888887754332 1122222234478899999999888763 34557788888888899999999999998
Q ss_pred hC-CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 474 SM-PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 474 ~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.. ...|+ ...|+++..+|.+.|+-.+|...+.++++-+-.+..+|.+..-+....|.|++|.+.+.++....
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 76 46675 66899999999999999999999999999998889999999999999999999999999997643
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.2e-06 Score=71.53 Aligned_cols=155 Identities=10% Similarity=0.089 Sum_probs=118.6
Q ss_pred HHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHH
Q 007818 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 433 (588)
+-.|...|+++.+....+.+..+. ..+...++.++++..++...+.+ +.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 446777888877765554333221 01223567788888888887764 667778999999999999999999
Q ss_pred HHHHHhhhhcCCCCChHHHHHHHHHH-HhcCC--hHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 007818 434 KYFAQMSSIFRLSPKLKHYSCMVDLL-GRSGL--LEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLL 508 (588)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (588)
..+++..+. .+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999873 345678888888864 67777 59999999987 3455 56788888888999999999999999999
Q ss_pred ccCCCCCchHH
Q 007818 509 ELDPQDSGIYV 519 (588)
Q Consensus 509 ~~~p~~~~~~~ 519 (588)
+..|.+..-..
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99987665443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-08 Score=57.53 Aligned_cols=34 Identities=12% Similarity=0.096 Sum_probs=24.4
Q ss_pred cccCcCCchhhHHHHhhcccCCCChhhHHhhcccCC
Q 007818 4 TGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ 39 (588)
Q Consensus 4 ~g~~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~ 39 (588)
+|++||..+||.||..|+ +.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~C--k~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYC--KAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHH--HCCCHHHHHHHHHhCc
Confidence 367777777777777777 7777777777777663
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.5e-06 Score=70.55 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (588)
..+...+...|+-+....+....... ...+.......+....+.|++..|...++++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 33445555566666665555553332 122333444456666667777777777777665 556666777777777777
Q ss_pred cCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHH
Q 007818 462 SGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRK 539 (588)
Q Consensus 462 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 539 (588)
.|++++|..-|.+. ...| ++...+.+.-.+.-.|+++.|..++..+....+.|+.+-.+|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777776666554 3333 445556666666667777777777777776666677777777777777777777766654
Q ss_pred H
Q 007818 540 M 540 (588)
Q Consensus 540 ~ 540 (588)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 3
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.7e-06 Score=79.87 Aligned_cols=248 Identities=13% Similarity=0.026 Sum_probs=175.6
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhH
Q 007818 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365 (588)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (588)
-+.+.|++.+|.-.|+..++.. +-+...|..|-......++-..|+..+++..+... .+......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence 3567788888888888877763 33556677777777777777778888877777642 356667778888888888888
Q ss_pred HHHHhccCCCCC-cchHHHHH---------HHHHhcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHhccCCchHHHHH
Q 007818 366 ALQVFHEMPERN-SLTYTAII---------GGLALHGKALDAISYFSEM-IGVGLMPDEITFLGILSACCHGGLVDEGRK 434 (588)
Q Consensus 366 A~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~a~~~~~~~-~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 434 (588)
|.+.++...... ...|.... ..+..........++|-++ ...+..+|+.....|.-.|.-.|++++|..
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 888877653211 00010000 1112222234445555444 445545788888888888889999999999
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
.|+.+.. .-|-|...||.|.-.++...+.++|+..|+++ ..+|. +.++..+.-.|...|.+++|...|-.++.+.+
T Consensus 452 cf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 452 CFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 9999986 33456889999999999999999999999987 57786 55788888899999999999999999987665
Q ss_pred C-----C-----CchHHHHHHHHHccCChHHHHHH
Q 007818 513 Q-----D-----SGIYVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 513 ~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 537 (588)
. + ..+|..|=.++.-.++.|-+.++
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 4 1 24677776666667776644443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0002 Score=78.78 Aligned_cols=320 Identities=12% Similarity=-0.035 Sum_probs=188.1
Q ss_pred HHHhCCChhHHHHHhccCCC----CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCC--C----CCCcc--hHHHHHHHH
Q 007818 123 VFVSCGDLGLACNVFDESCV----RNLVSWNSLINGFVRSGFPREAIRLFRDMQLER--V----EPDEV--TMIGMVSAC 190 (588)
Q Consensus 123 ~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~----~p~~~--~~~~ll~~~ 190 (588)
.....|+++.+..+++.++. .+..........+...|+++++...+......- . .+... ....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456677766666665421 122333334445566778888877777664321 0 11111 112223344
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCh----hhHHHHHHHHHhcCChhHHHHHHHhcCCC-----C----cchHHHHHHHHH
Q 007818 191 AQLEDLNLGREIHWYISESGLTLTV----PLANALMDMYVKCGKLESAEEIFDSMVNK-----T----VVSCTTMIVGYA 257 (588)
Q Consensus 191 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~ll~~~~ 257 (588)
...|+++.|...++.....-...+. ...+.+...+...|++++|...+.+.... + ......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 5678888888888777653111121 23455666677788888888777766321 1 123344455667
Q ss_pred hcCCHHHHHHHhhhCCC----C---Cc----ccHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHH
Q 007818 258 KFGFLDIARKIFDDLPE----K---YV----VPWNAIIGGYVQAKRSKEALALFHEMQATG--IKPD--AVTTVHCLSAC 322 (588)
Q Consensus 258 ~~~~~~~a~~~~~~~~~----~---~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~p~--~~~~~~l~~~~ 322 (588)
..|+++.|...+++... . .. ..+..+...+...|++++|...+.+..... ..+. ...+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 78888888777665432 1 11 113344556677799999998888775531 1121 23344455567
Q ss_pred cccCChhHHHHHHHHHHHhCCCCc-chHH-----HHHHHHhHhcCChhHHHHHhccCCCCCcc-------hHHHHHHHHH
Q 007818 323 SQLGALDDGIWIHRFIEKENFNLN-VVLG-----TALVDMYAKCGNIAKALQVFHEMPERNSL-------TYTAIIGGLA 389 (588)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~l~~~~~ 389 (588)
...|+.+.|...+........... ...+ ...+..+...|+.+.|...+.....+... .+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 788999999888877754311111 1101 11224455678899998888766543211 1345666788
Q ss_pred hcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhccCCchHHHHHHHHHhhhh
Q 007818 390 LHGKALDAISYFSEMIGV----GLMPDE-ITFLGILSACCHGGLVDEGRKYFAQMSSI 442 (588)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 442 (588)
..|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999988887653 322221 35556667788899999999999888774
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-05 Score=66.51 Aligned_cols=169 Identities=13% Similarity=0.125 Sum_probs=119.2
Q ss_pred HHHHHHHhHhcCChhHHHHHhccCCCCCcchHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 007818 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYT---AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426 (588)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 426 (588)
|..++-+....|+.+.|...++.+...-+.++. .-...+-..|++++|+++++.+.+.. +.|..++..-+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 444555556667777777777765532122221 11223455788899999999888875 55566676666666677
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhC---CHHHHH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHG---NVSIGE 501 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~---~~~~A~ 501 (588)
|..-+|++-+....+ .+..|...|..+...|...|++++|.-.++++. ..| ++..+..+...+.-.| +.+.|.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788888888888 677889999999999999999999999999874 445 5556666666644333 677888
Q ss_pred HHHHHHhccCCCCCchHHHH
Q 007818 502 RAAMKLLELDPQDSGIYVLL 521 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l 521 (588)
+.|.+++++.|.+...+.-+
T Consensus 212 kyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHhChHhHHHHHHH
Confidence 99999999999665555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-06 Score=69.87 Aligned_cols=97 Identities=21% Similarity=0.173 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
......++..+...|++++|.+.++.+. ..| +...+..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 3445556666777777777777776652 233 45566666666777777777777777777777777777777777777
Q ss_pred ccCChHHHHHHHHHHHhcC
Q 007818 527 DSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~~ 545 (588)
..|++++|.+.+++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 7888888888777776643
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.6e-06 Score=69.48 Aligned_cols=168 Identities=13% Similarity=0.031 Sum_probs=132.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
|..++-+....|+.+.|...++++... ++.+......-..-+...|.+++|.++++.+.++ -+.|..++..-+-..-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHH
Confidence 445666777889999999999999886 3333333333333455679999999999999985 3556677776677777
Q ss_pred hcCChHHHHHHHHhC--CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC---ChHHHH
Q 007818 461 RSGLLEEAEQLIRSM--PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN---MWEEAG 535 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~ 535 (588)
..|..-+|++-+... .+-.|...|..+...|...|++++|.-.+++++=..|.++..+..++.++.-.| +.+-|+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 788888888777665 245699999999999999999999999999999999999999999999988766 677899
Q ss_pred HHHHHHHhcCCccCCc
Q 007818 536 KVRKMMEERGVEKTPG 551 (588)
Q Consensus 536 ~~~~~~~~~~~~~~~~ 551 (588)
+++.+..+...+...+
T Consensus 212 kyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHhChHhHHH
Confidence 9999998876544433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-05 Score=81.47 Aligned_cols=148 Identities=14% Similarity=0.076 Sum_probs=84.1
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH 425 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 425 (588)
.+..+..+|-+.|+.++|..+|+++.+ .|+.+.|.+...|... +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 344455555555555555555555442 2344455555555555 555555555544432 333
Q ss_pred CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHH
Q 007818 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAM 505 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 505 (588)
.+++..+.++|.++.. ..+.+...+..+.+.....-.+ .--..++..+...|...+++++++.+++
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~------------~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREF------------TRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhcc------------chhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 3445555555555554 2223333333333222211111 1223445556667778889999999999
Q ss_pred HHhccCCCCCchHHHHHHHHH
Q 007818 506 KLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 506 ~~~~~~p~~~~~~~~l~~~~~ 526 (588)
.+++.+|.|..+..-++.+|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 999999999999999999887
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-05 Score=72.91 Aligned_cols=189 Identities=11% Similarity=0.085 Sum_probs=139.2
Q ss_pred HHHhHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc-
Q 007818 354 VDMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHG-KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL- 428 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~- 428 (588)
-..+...++.++|+....++.+. +..+|+.....+...| ++++++..++++.+.. +.+..+|......+.+.|+
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33444566778888888877653 3345555555666667 5799999999999864 4445567665555555565
Q ss_pred -hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhh---CC----HH
Q 007818 429 -VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLH---GN----VS 498 (588)
Q Consensus 429 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---~~----~~ 498 (588)
.+++..+++++.+ .-+-+..+|.....++.+.|+++++++.++++. ..| +...|......+... |. .+
T Consensus 123 ~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 3678888988886 445678889999999999999999999999883 333 566777776665544 22 25
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHc----cCChHHHHHHHHHHHhcC
Q 007818 499 IGERAAMKLLELDPQDSGIYVLLANMYRD----SNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 545 (588)
.++....++++.+|+|..+|+.+..++.. .++..+|.+...++.+.+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 67888889999999999999999999988 355677888888876644
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.7e-06 Score=80.77 Aligned_cols=187 Identities=14% Similarity=0.103 Sum_probs=156.8
Q ss_pred CCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
+|--..-..+...+...|-...|..+++++. .|-.++..|+..|+..+|..+..+..+. +|++..|..+.+..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 4444555677888899999999999998764 5777888999999999999999888873 89999999999888
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHH
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~ 501 (588)
....-+++|.++.+....+ .-..+.....+.++++++.+.|+.- ...| ...+|-.+..+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 8888888999988877552 1222333345689999999999864 5555 6778988888889999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
..|...+.++|++...|+++..+|.+.|+..+|...+++..+-+
T Consensus 540 ~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 540 KAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999998876
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-05 Score=72.49 Aligned_cols=112 Identities=21% Similarity=0.143 Sum_probs=54.4
Q ss_pred cCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIGER 502 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A~~ 502 (588)
..|++++|+..++.+.. ..+.|+..+....+.+.+.++..+|.+.++++ ...|+ ...+..+..++.+.|+..+|+.
T Consensus 318 ~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~ 395 (484)
T COG4783 318 LAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIR 395 (484)
T ss_pred HhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHH
Confidence 34455555555555444 33333444444444555555555555555544 23343 3344444445555555555555
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHH
Q 007818 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (588)
.+......+|+||..|..|+.+|..+|+..+|....
T Consensus 396 ~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 396 ILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 555555555555555555555555544444444333
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.7e-05 Score=80.51 Aligned_cols=199 Identities=13% Similarity=0.112 Sum_probs=129.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHhcCCC--------CcchHHHHHHHHHhcCCHHHHHHHhhhCCCC-Ccc-cHHHH
Q 007818 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNK--------TVVSCTTMIVGYAKFGFLDIARKIFDDLPEK-YVV-PWNAI 283 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~l 283 (588)
+...|-..|......++.++|.++.++.... -...|.++++.-..-|.-+...++|+++.+. ++. .|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4456666677777777777777777776432 2346777777766667777777777776552 222 26777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCC-CcchHHHHHHHHhHhcCC
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN-LNVVLGTALVDMYAKCGN 362 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 362 (588)
...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.+..+.-++ -......-.+..-.+.|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 77777777777777777777765 3345556666777777777777777777666655322 123334445555566777
Q ss_pred hhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 007818 363 IAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE 413 (588)
Q Consensus 363 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 413 (588)
.+++..+|+.... +-...|+..++.-.++|+.+.+..+|++....++.|-.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 7777777776653 24556777777777777777777777777776665543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-05 Score=71.96 Aligned_cols=182 Identities=15% Similarity=0.005 Sum_probs=125.2
Q ss_pred CCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCC-C-cchHHHHHHHHhHhcCChhHHHHHhccCCC--CC-cc---hH
Q 007818 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN-L-NVVLGTALVDMYAKCGNIAKALQVFHEMPE--RN-SL---TY 381 (588)
Q Consensus 310 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~---~~ 381 (588)
.....+......+...|+++.|...++.+...... | ....+..+..++...|++++|...++++.+ |+ .. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35566777888889999999999999999876432 1 124567788999999999999999999864 32 22 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHH
Q 007818 382 TAIIGGLALH--------GKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452 (588)
Q Consensus 382 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 452 (588)
..+..++... |++++|.+.++.+... .|+.. ....+... ..+... . ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~--------------~~~~~~----~-~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM--------------DYLRNR----L-AGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH--------------HHHHHH----H-HHHH
Confidence 5556666654 7889999999999875 45432 22211111 111100 0 0112
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC----CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSMP----MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
..+...|.+.|++.+|...+++.. ..| ....+..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356677888899999988888762 223 345778888888889999999988887776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00013 Score=62.72 Aligned_cols=155 Identities=19% Similarity=0.162 Sum_probs=77.6
Q ss_pred HHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----CCch
Q 007818 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH----GGLV 429 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~ 429 (588)
...|+..|++++|++...... +....-.=...+.+..+.+-|.+.+++|.+- -+..|.+.+..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 344556666666666655522 2222222233344555566666666666552 244455545444432 3345
Q ss_pred HHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHhHHHHHHHHHHhhC-CHHHHHHHHHH
Q 007818 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM--AADVVVWGALFFACRLHG-NVSIGERAAMK 506 (588)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~ 506 (588)
..|.-+|+++.+ +.+|++.+.+..+-+....|++++|..++++.-. ..++.++..++-.....| +.+--.+.+.+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 566666666655 4456666666666666666666666666655421 123444444443333333 23333445555
Q ss_pred HhccCCCCC
Q 007818 507 LLELDPQDS 515 (588)
Q Consensus 507 ~~~~~p~~~ 515 (588)
+....|.++
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 555555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=4e-07 Score=52.30 Aligned_cols=32 Identities=25% Similarity=0.456 Sum_probs=14.8
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 444 RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
|+.||..+|+.||.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.9e-06 Score=77.23 Aligned_cols=123 Identities=15% Similarity=0.041 Sum_probs=99.1
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACR 492 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 492 (588)
....++..+...++++.|..+++++.+. .|+ ....++..+...++-.+|.+++++.- ..| +...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455666777778888899998888874 244 44557788878888888888887763 334 5666666667788
Q ss_pred hhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
+.++++.|..+.+++.+..|++-..|..|+.+|.+.|++++|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999888763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-05 Score=65.13 Aligned_cols=115 Identities=11% Similarity=0.033 Sum_probs=90.1
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 007818 400 YFSEMIGVGLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PM 477 (588)
Q Consensus 400 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 477 (588)
.+++.... .|+ ......+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|..++++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555553 443 345666777888899999999999998873 3556788888999999999999999999876 33
Q ss_pred CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchH
Q 007818 478 AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518 (588)
Q Consensus 478 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (588)
.| +...+..+...+...|++++|...++++++..|+++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44 566777778888999999999999999999999876544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0001 Score=63.33 Aligned_cols=247 Identities=15% Similarity=0.057 Sum_probs=153.5
Q ss_pred CcccccCcCCchhhHHHHhhcccCCCChhhHHhhcccCC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC
Q 007818 1 MTITGLISHGFAPSRLIAFCAISESKNLDYCTKILFNVQ--NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD 78 (588)
Q Consensus 1 ~~~~g~~~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 78 (588)
|.+.+..|+...||.==.+| .|++..++..-+... +.+...-.-+-++|...|.+...+. .+.. . ..|.
T Consensus 1 m~~~~~g~~d~LF~iRn~fY----~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~-~~~~ 71 (299)
T KOG3081|consen 1 MSSMEAGPEDELFNIRNYFY----LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVIS---EIKE-G-KATP 71 (299)
T ss_pred CCccccCcchhHHHHHHHHH----hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccc---cccc-c-cCCh
Confidence 33445556655554332233 688888887765543 2344444556678888887755433 2222 1 1222
Q ss_pred cccHHHHHHHHHccCChhh-HHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHh
Q 007818 79 NFTYPLLFKVCASLGLRFL-GYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVR 157 (588)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 157 (588)
......+......-++.+. ..++.+.+.......+......-...|...|++++|++.+.... +......=...+.+
T Consensus 72 lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk 149 (299)
T KOG3081|consen 72 LQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLK 149 (299)
T ss_pred HHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHH
Confidence 2223333333333333332 33455555554444443444444567888999999999998843 33344334556777
Q ss_pred CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhH
Q 007818 158 SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ----LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233 (588)
Q Consensus 158 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 233 (588)
..+++-|.+.+++|.+- -+..|.+.|..++.+ .+....|.-+|+++-+. .+|++.+.+..+.++...|++++
T Consensus 150 ~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee 225 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE 225 (299)
T ss_pred HHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence 88899999999999863 466788878777754 34677888888888765 67788888999999999999999
Q ss_pred HHHHHHhcCCCC---cchHHHHHHHHHhcCCH
Q 007818 234 AEEIFDSMVNKT---VVSCTTMIVGYAKFGFL 262 (588)
Q Consensus 234 A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~ 262 (588)
|..+++....++ +.+...++.+....|..
T Consensus 226 Ae~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 226 AESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 999999886653 44444444444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.8e-05 Score=69.85 Aligned_cols=143 Identities=16% Similarity=0.058 Sum_probs=103.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDL 458 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 458 (588)
+-.....+...|++++|+..++.+++. .|+.. ........+.+.++.++|.+.++++... .|+ ....-.+..+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~a 383 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHH
Confidence 333444556678888888888888775 44444 4455566788888888888888888863 344 5556677888
Q ss_pred HHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHH
Q 007818 459 LGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (588)
|.+.|++.+|..++++.. .+.|+..|..+..+|...|+..++... .+..|+..|++++|..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHH
Confidence 888888888888888763 234677888888888888886655443 5566777888888888
Q ss_pred HHHHHHhcC
Q 007818 537 VRKMMEERG 545 (588)
Q Consensus 537 ~~~~~~~~~ 545 (588)
.+....++.
T Consensus 447 ~l~~A~~~~ 455 (484)
T COG4783 447 FLMRASQQV 455 (484)
T ss_pred HHHHHHHhc
Confidence 888776654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.5e-05 Score=73.96 Aligned_cols=128 Identities=13% Similarity=0.096 Sum_probs=107.6
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 427 (588)
.....|+..+...++++.|..+++++.+.++.....++..+...++-.+|++++++..+.. +-+......-...+.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445667777788999999999999998888888889999999999999999999988753 445556666677788999
Q ss_pred chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 007818 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478 (588)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 478 (588)
+++.|..+.+++.. -.|.+..+|..|+.+|...|++++|+-.++.++..
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999999997 44555789999999999999999999999999733
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00017 Score=74.15 Aligned_cols=142 Identities=11% Similarity=0.095 Sum_probs=110.5
Q ss_pred CCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007818 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--R-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419 (588)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 419 (588)
...+...+..|.....+.|.+++|..+++...+ | +......++..+.+.+++++|+..+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 344577788888899999999999999998874 4 34567778888999999999999999998863 3344566677
Q ss_pred HHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHH
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGAL 487 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l 487 (588)
..++.+.|++++|..+|+++.. ..+.+...+..+..++...|+.++|...|++.. ..|....++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 7788899999999999999987 334557888889999999999999999998873 23444444433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.3e-06 Score=59.68 Aligned_cols=66 Identities=21% Similarity=0.163 Sum_probs=60.6
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC-ChHHHHHHHHHHHhcC
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN-MWEEAGKVRKMMEERG 545 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 545 (588)
++..|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678888889999999999999999999999999999999999999999 7999999999987643
|
... |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.6e-05 Score=62.33 Aligned_cols=113 Identities=12% Similarity=0.028 Sum_probs=69.2
Q ss_pred CCchHHHHHHHHHhhhhcCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHhCCCC-CCH----hHHHHHHHHHHhhCCH
Q 007818 426 GGLVDEGRKYFAQMSSIFRLSPK---LKHYSCMVDLLGRSGLLEEAEQLIRSMPMA-ADV----VVWGALFFACRLHGNV 497 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~ 497 (588)
.++...+...++.+.+. .+.+ ....-.+...+...|++++|.+.|+.+... |+. .....+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 56666666666776664 2222 222334556666777777777777766321 332 2334455566677777
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
++|+..++.. ...+-.+..+..++.+|.+.|++++|++.|+..
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777777552 233335666777888888888888888887754
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.8e-06 Score=62.99 Aligned_cols=78 Identities=23% Similarity=0.195 Sum_probs=50.6
Q ss_pred cCChHHHHHHHHhCC-CCC---CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHH
Q 007818 462 SGLLEEAEQLIRSMP-MAA---DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 462 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (588)
.|++++|+.+++++. ..| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 356666666666552 112 334455566667777777777777777 666666666777778888888888888888
Q ss_pred HHH
Q 007818 538 RKM 540 (588)
Q Consensus 538 ~~~ 540 (588)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 775
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.4e-05 Score=61.75 Aligned_cols=95 Identities=15% Similarity=0.043 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC---CchHHHHH
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQD---SGIYVLLA 522 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 522 (588)
++..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...+++++...|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555666666777777777776652 1222 2345556666777777777777777777776664 44567777
Q ss_pred HHHHccCChHHHHHHHHHHHhcC
Q 007818 523 NMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.++.+.|++++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777776653
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.7e-06 Score=57.26 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=52.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+...+...|++++|+..++++++..|+++.++..++.++.+.|++++|.++++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45567889999999999999999999999999999999999999999999999997654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00016 Score=59.17 Aligned_cols=125 Identities=16% Similarity=0.120 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC--hHHHHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPD---EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK--LKHYSCM 455 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 455 (588)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|. ......|
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33444444 3677788877888877753 222 123444556777888888888888888875 32222 1234456
Q ss_pred HHHHHhcCChHHHHHHHHhCCCC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 007818 456 VDLLGRSGLLEEAEQLIRSMPMA-ADVVVWGALFFACRLHGNVSIGERAAMKLL 508 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (588)
...+...|++++|+..++..... ..+..+......+...|++++|...|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77788888888888888776433 345556666777888888888888888763
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.8e-05 Score=58.46 Aligned_cols=94 Identities=21% Similarity=0.155 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
+..++..+...|++++|.++++++. ..| +...+..+...+...|++++|...++++++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 4566777888889999998888763 334 34567777777888899999999999999999988889999999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 007818 530 MWEEAGKVRKMMEERG 545 (588)
Q Consensus 530 ~~~~A~~~~~~~~~~~ 545 (588)
++++|.+.++...+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998886543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00082 Score=70.06 Aligned_cols=238 Identities=8% Similarity=0.012 Sum_probs=146.8
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCccc-HHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHH
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT-YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHN 118 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (588)
+.+...+..|+..+...+++++|.++.+...+ ..|+... |..+...+.+.++...+..+ .+... .+...-++
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~---~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--~~~~~~~~ 100 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK---EHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--FSQNLKWA 100 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh--cccccchh
Confidence 56777899999999999999999999998777 5566543 33333355566776666555 33322 12221222
Q ss_pred HHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhH
Q 007818 119 AVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNL 198 (588)
Q Consensus 119 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 198 (588)
.+-..|...+++ ..+..++-.+..+|-+.|+.+++..+++++.+.. +-|....+.+...++.. ++++
T Consensus 101 ~ve~~~~~i~~~-----------~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 101 IVEHICDKILLY-----------GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred HHHHHHHHHHhh-----------hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 222222222221 1233467778888999999999999999998876 55677788888888888 9999
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhC-CCCCc
Q 007818 199 GREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL-PEKYV 277 (588)
Q Consensus 199 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~ 277 (588)
|.+++...+.. +....++..+.+++.++...++.-+..++....+.. ..+ ....+
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~---------~~~~~~~~~ 223 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVL---------GHREFTRLV 223 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHH---------hhhccchhH
Confidence 99888776655 556667778888777776654443333222211100 000 01112
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007818 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322 (588)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 322 (588)
.++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y 267 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFY 267 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHH
Confidence 234445556666777777777777777653 22444444555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0097 Score=56.94 Aligned_cols=202 Identities=12% Similarity=0.073 Sum_probs=136.7
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC---ChhHHHHHhccCC----CCCcchHHHHHHHHHhcCChHHHHHHH
Q 007818 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG---NIAKALQVFHEMP----ERNSLTYTAIIGGLALHGKALDAISYF 401 (588)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~ 401 (588)
+++..+++.....-...+..+|..+.+.--..- +.+.....++++. ..-..+|-..++.-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445555555444333334444444433221111 2444555555544 234457888888888888899999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCC---
Q 007818 402 SEMIGVGLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM--- 477 (588)
Q Consensus 402 ~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 477 (588)
.+.++.+..+ +......++..+| ++|.+-|.++|+.-.++ +..++..-...++.+...++-..|..+|++...
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999988777 5556777777665 57789999999998884 445556667888999999999999999998842
Q ss_pred CC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC----CchHHHHHHHHHccCChHH
Q 007818 478 AA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD----SGIYVLLANMYRDSNMWEE 533 (588)
Q Consensus 478 ~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~ 533 (588)
.| ....|..++.--..-|+...+.++-++.....|.+ ...-.....-|.-.+.+..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 33 35689999988889999999999988887766622 1123344555555555443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.1e-06 Score=48.34 Aligned_cols=35 Identities=40% Similarity=0.770 Sum_probs=30.6
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc
Q 007818 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE 180 (588)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 180 (588)
.+||+++.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36899999999999999999999999999988873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.1e-05 Score=65.50 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=89.7
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHh-hC--CHHHHHHHHHHHhccCCCCCchHHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMA-ADVVVWGALFFACRL-HG--NVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~-~~--~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
+-|...|..|...|.+.|++..|..-|.+. ... +++..+..+..++.. .| ...++..+++++++++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 567899999999999999999999999877 344 456677777777433 23 5678999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHhcCCccCCce
Q 007818 521 LANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552 (588)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 552 (588)
|+..++..|++.+|...|+.|.+...+.++..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 99999999999999999999998876655543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.019 Score=58.53 Aligned_cols=133 Identities=14% Similarity=0.202 Sum_probs=86.9
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH--ccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCh
Q 007818 53 FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA--SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130 (588)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (588)
....+++..|+.....+.++. |+.. |..+++++. +.|..++|..+++.....+.. |..|...+-.+|.+.++.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~---Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH---PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC---CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 455678888888888887743 5543 444555544 888888898888877765543 777888888888889999
Q ss_pred hHHHHHhccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHh
Q 007818 131 GLACNVFDESCV--RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA 191 (588)
Q Consensus 131 ~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 191 (588)
++|..+|++... |+......+..+|.+-+++.+-.++--+|-+ ..+-+...+-.++....
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLIL 155 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHH
Confidence 999999988654 4444444556667777666543333222222 23445555555555543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.1e-06 Score=47.39 Aligned_cols=33 Identities=30% Similarity=0.653 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 007818 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178 (588)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 178 (588)
.+|+.++.++.+.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 568888888888888888888888888888776
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00011 Score=57.98 Aligned_cols=106 Identities=8% Similarity=0.011 Sum_probs=72.4
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCC-CCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRL-SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALF 488 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 488 (588)
++......+.+.|++++|...++.+.....- +.....+..++.++.+.|++++|.+.++.+. ..|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566667777888888888777764211 1113455667777888888888888887763 2232 44566777
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
.++...|+.++|...++++++..|+++.+...
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 77888888889999999998888887655443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.3e-05 Score=71.65 Aligned_cols=108 Identities=13% Similarity=-0.000 Sum_probs=90.2
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCC
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGN 496 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 496 (588)
-...+...|++++|++.|+++.+. .+.+...|..+..+|...|++++|+..++++ ...| +...+..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999973 3456788888999999999999999999987 3445 56788888888999999
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHcc
Q 007818 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (588)
+++|+..++++++++|+++.+...+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988887776664443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0058 Score=60.09 Aligned_cols=210 Identities=12% Similarity=0.044 Sum_probs=119.8
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHH------HHHHHccCChhhHHHHHHHHHHhcCCCC
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLL------FKVCASLGLRFLGYEIFGHVLKLGFDVD 113 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 113 (588)
.|.+..|..+...-...-.++-|...|-+...-.|++.-...-... ...-+--|.+++|++++-.+-++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 6777788888777776667777777776654423332211100000 0111223677888888777665442
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCCCC-----CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHH
Q 007818 114 MYVHNAVIHVFVSCGDLGLACNVFDESCVR-----NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS 188 (588)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 188 (588)
.+..+.+.|++-...++++..... -..+|+.+...+.....|++|.+.|..-... ...+.
T Consensus 766 ------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~e 830 (1189)
T KOG2041|consen 766 ------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIE 830 (1189)
T ss_pred ------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHH
Confidence 355667778888888888764322 1246777777777777888887777653211 12344
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHH
Q 007818 189 ACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKI 268 (588)
Q Consensus 189 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 268 (588)
++.+...+++-+.+... ++.+....-.+.+++.+.|.-++|.+.+-+.-.|. ..+..|...+++.+|.++
T Consensus 831 cly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHH
Confidence 45544444443333222 34455566667777777777777766665443332 234445555666666666
Q ss_pred hhhCCCCCc
Q 007818 269 FDDLPEKYV 277 (588)
Q Consensus 269 ~~~~~~~~~ 277 (588)
-+...-+.+
T Consensus 901 aq~~~l~qv 909 (1189)
T KOG2041|consen 901 AQRFQLPQV 909 (1189)
T ss_pred HHhccchhH
Confidence 655544433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.8e-05 Score=54.93 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=53.2
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
..+.+.++++.|..+++++++.+|+++..+...+.++.+.|++++|.+.++++.+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4577899999999999999999999999999999999999999999999999987654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.9e-05 Score=46.20 Aligned_cols=34 Identities=38% Similarity=0.762 Sum_probs=29.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD 412 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 412 (588)
.+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=59.13 Aligned_cols=92 Identities=14% Similarity=0.024 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
......-+...|++++|..+|+-+. ..| +...|..+..++...+++++|+..|..+..+.++||....+.+.+|...|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 3344555678999999999999773 333 66678888888899999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 007818 530 MWEEAGKVRKMMEE 543 (588)
Q Consensus 530 ~~~~A~~~~~~~~~ 543 (588)
+.++|+..|+.+.+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998877
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.95 E-value=7.4e-05 Score=65.60 Aligned_cols=107 Identities=18% Similarity=0.089 Sum_probs=69.9
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A 500 (588)
+.+.+++.+|+..|.++++ -.+-+...|..-..+|.+.|+++.|.+-.+.. ...|. ..+|..+..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456677777777777765 22334555555666777777777777666654 34553 45777777777777888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHccCCh
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (588)
++.|+++++++|++......|-++-.+.+..
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 8888888888887776666665554444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.2e-05 Score=55.91 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=47.8
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...|++++|+..++++++..|+++.++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999999999999999999999999887654
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00014 Score=61.63 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=71.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
...+..++..+...|++++|...|++.. ..|+ ...+..+...+...|++++|+..++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3456666777777788888888877652 2221 3567777778888899999999999999999988888888898
Q ss_pred HHHccCC--------------hHHHHHHHHHHHhcC
Q 007818 524 MYRDSNM--------------WEEAGKVRKMMEERG 545 (588)
Q Consensus 524 ~~~~~g~--------------~~~A~~~~~~~~~~~ 545 (588)
++...|+ +++|.+++++....+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 8888777 466666666665543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.2e-05 Score=67.07 Aligned_cols=91 Identities=20% Similarity=0.133 Sum_probs=80.1
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHH
Q 007818 457 DLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (588)
.-+.+.+++++|+..|.++ ...| ++..|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3456789999999999887 4666 6777788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCc
Q 007818 535 GKVRKMMEERGVE 547 (588)
Q Consensus 535 ~~~~~~~~~~~~~ 547 (588)
.+.|++.++....
T Consensus 169 ~~aykKaLeldP~ 181 (304)
T KOG0553|consen 169 IEAYKKALELDPD 181 (304)
T ss_pred HHHHHhhhccCCC
Confidence 9999988765433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00041 Score=63.70 Aligned_cols=134 Identities=12% Similarity=0.088 Sum_probs=101.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA-CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+ .++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 367788888888888999999999998643 3345556555555 3335777789999999998 45677888999999
Q ss_pred HHHhcCChHHHHHHHHhCCCC-CC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 458 LLGRSGLLEEAEQLIRSMPMA-AD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
.+...|+.+.|+.+|++.... |. ...|...+.--.+.|+.+....+.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999987422 33 34888888888899999999999999999888744
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.7e-05 Score=45.12 Aligned_cols=33 Identities=33% Similarity=0.491 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMP 411 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 411 (588)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888877776
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00029 Score=67.21 Aligned_cols=103 Identities=10% Similarity=-0.011 Sum_probs=81.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (588)
.....+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++++... .+.+...|..+..+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHh
Confidence 34556778899999999999999864 445668888888999999999999999999874 344677888899999999
Q ss_pred CChHHHHHHHHhC-CCCCCHhHHHHHH
Q 007818 463 GLLEEAEQLIRSM-PMAADVVVWGALF 488 (588)
Q Consensus 463 g~~~~A~~~~~~~-~~~~~~~~~~~l~ 488 (588)
|++++|...|+++ ...|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999886 3556544444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0029 Score=51.52 Aligned_cols=132 Identities=12% Similarity=0.001 Sum_probs=101.5
Q ss_pred CCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---CHhHH
Q 007818 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA---DVVVW 484 (588)
Q Consensus 409 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~ 484 (588)
..|+..--..+..+..+.|+..+|...|++...- -+..|......+.++....+++..|...++.+. ..| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4677776777888888889999999999888873 445667778888888888899999988888762 222 34455
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
..+.+++...|.+..|+..|+.++.-.| ++..-...+..+.++|+.++|..-+..+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 5667778888999999999999998888 57777778888888898777766555443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00023 Score=60.06 Aligned_cols=93 Identities=13% Similarity=-0.066 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA----DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
...+..++..+...|++++|...|++.. ..| ...++..+...+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5566777778888899999998888762 222 23477888888999999999999999999999998888888888
Q ss_pred HHH-------ccCChHHHHHHHHHH
Q 007818 524 MYR-------DSNMWEEAGKVRKMM 541 (588)
Q Consensus 524 ~~~-------~~g~~~~A~~~~~~~ 541 (588)
++. ..|++++|+..+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888666666554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00065 Score=57.48 Aligned_cols=129 Identities=12% Similarity=0.151 Sum_probs=88.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHH
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD--EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 455 (588)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+. .+.+...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 34566677778888888888888888876533332 356777888888899999999999888863 23346667777
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
..+|...|+...+..-++.. ...+++|.++++++++.+|++ +..++..+...|
T Consensus 113 g~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~ 165 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcC
Confidence 77888877766655433321 123677889999999999876 444444444333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.001 Score=61.15 Aligned_cols=158 Identities=13% Similarity=0.058 Sum_probs=115.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHH-------------H
Q 007818 386 GGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH-------------Y 452 (588)
Q Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~ 452 (588)
..+.-.|++++|.+.--...+.. ..+......-..++.-.++.+.+...|++.... .|+... +
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l---dpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL---DPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc---ChhhhhHHhHhhhHHHHHHH
Confidence 34667889999988877776643 222222222223445677888999998888743 444221 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCC-----CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSM-PMA-----ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~-~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
..=..-..+.|++.+|.+.+.+. .+. |+...|.....+..+.|+..+|+.-...+++++|.-..++..-+.++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 22233456889999999999876 333 455667777777889999999999999999999988888999999999
Q ss_pred ccCChHHHHHHHHHHHhcCCc
Q 007818 527 DSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~~~~ 547 (588)
-.++|++|.+.++...+...+
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999876544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.7e-05 Score=45.51 Aligned_cols=33 Identities=36% Similarity=0.514 Sum_probs=31.1
Q ss_pred HHHHhccCCCCCchHHHHHHHHHccCChHHHHH
Q 007818 504 AMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536 (588)
Q Consensus 504 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (588)
++++++++|+|+.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999963
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00038 Score=52.07 Aligned_cols=92 Identities=21% Similarity=0.170 Sum_probs=46.4
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCC
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGN 496 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 496 (588)
+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++.. ..| +...+..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 333444455555555555555432 12223444445555555555555555555431 122 22345555555556666
Q ss_pred HHHHHHHHHHHhccCC
Q 007818 497 VSIGERAAMKLLELDP 512 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p 512 (588)
++.|...+.++++..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666666665555
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00011 Score=53.38 Aligned_cols=78 Identities=18% Similarity=0.321 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCC-ChHHHHHHHHHHHhcCChHHHH
Q 007818 392 GKALDAISYFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP-KLKHYSCMVDLLGRSGLLEEAE 469 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 469 (588)
|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++... ..| +......++.++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~----~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLK----LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHT----HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4555555555555543211 122233334555555555555555555411 111 1233333344555555555555
Q ss_pred HHHH
Q 007818 470 QLIR 473 (588)
Q Consensus 470 ~~~~ 473 (588)
++++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=50.34 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=48.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 455 MVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
++..+.+.|++++|.+.|+++ ...| +...+..+..++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999998887 3445 566788888888899999999999999999999864
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.045 Score=51.34 Aligned_cols=134 Identities=11% Similarity=0.052 Sum_probs=94.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHH
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVG-LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 456 (588)
..+|-..+..-.+..-.+.|..+|-+..+.| +.++...++.++..++ .|+...|..+|+.-.. .++.+...-+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 4456666777677777888888888888887 5566667777777554 4677888888887776 3333444445666
Q ss_pred HHHHhcCChHHHHHHHHhCC--CC--CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 457 DLLGRSGLLEEAEQLIRSMP--MA--ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~--~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
..+.+.++-..|..+|+... .. .-...|..++.--..-|+...+..+-+++.++.|..
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 77778888888888888542 11 224567777777777888888888888888877753
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0017 Score=64.77 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..+..+.......|++++|...++++++++| +...|..++.++...|+.++|.+.++++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3444444444445666666666666666666 3555666666666666666666666666544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.054 Score=50.99 Aligned_cols=237 Identities=10% Similarity=0.037 Sum_probs=132.3
Q ss_pred HHHHHHHHCCCCCCHHHH-HHHHHHHcccCChhHHHHHHHHHHHhCCCC----cchHHHHHHHHhHhcCChhHHHHHhcc
Q 007818 298 ALFHEMQATGIKPDAVTT-VHCLSACSQLGALDDGIWIHRFIEKENFNL----NVVLGTALVDMYAKCGNIAKALQVFHE 372 (588)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 372 (588)
.+++.....-+.|+.... ..+...+.. +.+++..+.+.+....+.+ =..++..++....+.++...|.+.+.-
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333334445553322 233333333 4555555554444332211 134566777777888888888777765
Q ss_pred CC--CCCcc-------hHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHH-HHHHHH---HHhccCCc-hHHHHH
Q 007818 373 MP--ERNSL-------TYTAIIGGLAL----HGKALDAISYFSEMIGVGLMPDEI-TFLGIL---SACCHGGL-VDEGRK 434 (588)
Q Consensus 373 ~~--~~~~~-------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~---~~~~~~~~-~~~a~~ 434 (588)
+. +|+.. +-..+-+..+. .-+...-+.+|+......+ |.. ....++ .-+.+.|. -++|.+
T Consensus 324 L~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekaln 401 (549)
T PF07079_consen 324 LKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALN 401 (549)
T ss_pred HHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHH
Confidence 54 33222 11122222321 1123334555666555432 322 222222 33455565 788999
Q ss_pred HHHHhhhhcCCCCChHHHHHHH----HHHHhc---CChH---HHHHHHHhCCCCC----CHhHHHHHHHH--HHhhCCHH
Q 007818 435 YFAQMSSIFRLSPKLKHYSCMV----DLLGRS---GLLE---EAEQLIRSMPMAA----DVVVWGALFFA--CRLHGNVS 498 (588)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~~----~~~~~~~l~~~--~~~~~~~~ 498 (588)
+++.+.+- -+-|..+-+.+. .+|... ..+. +-...+++....| +...-+.+..| +..+|++.
T Consensus 402 LLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~ 479 (549)
T PF07079_consen 402 LLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYH 479 (549)
T ss_pred HHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHH
Confidence 98888762 223444333322 222221 1122 2233344444443 34455666666 46899999
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
++.-...-+.+..| ++.+|..++-++....+|++|.+++..+
T Consensus 480 kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 480 KCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99999999999999 8999999999999999999999999865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.003 Score=58.36 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=52.3
Q ss_pred HHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHhcc
Q 007818 353 LVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALH-GKALDAISYFSEMIGV----GLMPD--EITFLGILSACCH 425 (588)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~ 425 (588)
.+..|...|++..|-+.+. .+...|... |++++|++.|++..+. | .+. ..++..+...+.+
T Consensus 100 A~~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~ 167 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR 167 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence 3344555666665554433 244555555 6666666666654431 2 111 1244555556666
Q ss_pred CCchHHHHHHHHHhhhhcCCC-----CChH-HHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 426 GGLVDEGRKYFAQMSSIFRLS-----PKLK-HYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
.|++++|.++|+++... ... .+.. .+...+-++...|+...|.+.+++.
T Consensus 168 l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 168 LGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp TT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666543 111 1111 1222333445556666666666654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0028 Score=53.42 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=49.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHH
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD--EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 456 (588)
..|..+...+...|++++|+..|++.......|. ..++..+..++...|++++|...+++.... .+.....+..+.
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHH
Confidence 3455666666777777777777777765432221 235666677777777777777777777653 223344455555
Q ss_pred HHHH
Q 007818 457 DLLG 460 (588)
Q Consensus 457 ~~~~ 460 (588)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=8e-05 Score=41.98 Aligned_cols=30 Identities=33% Similarity=0.667 Sum_probs=23.0
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 007818 147 SWNSLINGFVRSGFPREAIRLFRDMQLERV 176 (588)
Q Consensus 147 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 176 (588)
+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677788888888888888888888777653
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0027 Score=63.43 Aligned_cols=141 Identities=14% Similarity=0.073 Sum_probs=103.2
Q ss_pred CCCCcchHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhccC--------CchHHHHHHHHHh
Q 007818 374 PERNSLTYTAIIGGLAL--HG---KALDAISYFSEMIGVGLMPDE-ITFLGILSACCHG--------GLVDEGRKYFAQM 439 (588)
Q Consensus 374 ~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~ 439 (588)
...+...|...+++... .+ +...|..+|++..+. .|+. ..+..+..++... +++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34577889888887543 33 377899999999985 5664 4566555544322 1233444444443
Q ss_pred hhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 440 SSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
......+.++..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|.+|.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 332123445677888877777889999999999987 46788889999999999999999999999999999998874
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00083 Score=49.76 Aligned_cols=79 Identities=14% Similarity=0.039 Sum_probs=67.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHCCC-CCCcchHHHHHHHHhccC--------ChhHHHHHHHHHHHhCCCCChhhHH
Q 007818 149 NSLINGFVRSGFPREAIRLFRDMQLERV-EPDEVTMIGMVSACAQLE--------DLNLGREIHWYISESGLTLTVPLAN 219 (588)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 219 (588)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++. +....+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 899999999999887654 2446778899999999999999999
Q ss_pred HHHHHHHh
Q 007818 220 ALMDMYVK 227 (588)
Q Consensus 220 ~l~~~~~~ 227 (588)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.064 Score=49.45 Aligned_cols=273 Identities=16% Similarity=0.099 Sum_probs=176.6
Q ss_pred CCHHHHHHHhhhC---CCCCcccHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHcccCChhHHH
Q 007818 260 GFLDIARKIFDDL---PEKYVVPWNAIIGGY--VQAKRSKEALALFHEMQATGIKPDAV--TTVHCLSACSQLGALDDGI 332 (588)
Q Consensus 260 ~~~~~a~~~~~~~---~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~ 332 (588)
|+-..|.++-.+. ...|..+.-.++.+- .-.|+++.|.+-|+.|... |... .+..|.-..-+.|+.+.|.
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr 174 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAAR 174 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHH
Confidence 3444444443332 223444444444433 3468888888888888763 3322 2333444445778888888
Q ss_pred HHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC-----CCCcc--hHHHHHHHH---HhcCChHHHHHHHH
Q 007818 333 WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP-----ERNSL--TYTAIIGGL---ALHGKALDAISYFS 402 (588)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~---~~~~~~~~a~~~~~ 402 (588)
.+-+..-..-. .-.....+.+...+..|+++.|+++++.-. +++.. .--.|+.+- .-..+...|...-.
T Consensus 175 ~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 175 HYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 87776655432 234567788888999999999999887654 23322 111222211 11234666666666
Q ss_pred HHHHCCCCCCHHH-HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC----CC
Q 007818 403 EMIGVGLMPDEIT-FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM----PM 477 (588)
Q Consensus 403 ~~~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 477 (588)
+..+ +.|+... -.....++.+.|+..++-.+++.+.+. .|.+.++..++ +.+.|+. +..-+++. ..
T Consensus 254 ~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~sl 324 (531)
T COG3898 254 EANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKKLESL 324 (531)
T ss_pred HHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhc
Confidence 6555 4677653 334467889999999999999999865 56666554333 3466653 33333332 13
Q ss_pred CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc-CChHHHHHHHHHHHhcCC
Q 007818 478 AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS-NMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 478 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 546 (588)
+| +..+...+..+....|++..|..-.+.+....| ...+|..|+++-... |+-.++...+.+..+..-
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 44 566777778888899999999999999999999 467888888887655 999999999999887643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0076 Score=53.89 Aligned_cols=57 Identities=19% Similarity=0.203 Sum_probs=47.7
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQD---SGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
+..-|.+.|.+..|+.-++.+++.-|+. +.++..+..+|...|..++|.++...+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 4455788999999999999999988874 44577788999999999999998887643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0015 Score=50.50 Aligned_cols=89 Identities=20% Similarity=-0.003 Sum_probs=59.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC---CC-C-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC---CCchHHHHHHHH
Q 007818 454 CMVDLLGRSGLLEEAEQLIRSMP---MA-A-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ---DSGIYVLLANMY 525 (588)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~---~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~ 525 (588)
.+..++-..|+.++|..+|++.. .. + ....+..+.+++...|++++|..++++.+...|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34556666777777777776652 11 1 1335566777777778888888888888777776 555566667777
Q ss_pred HccCChHHHHHHHHHHH
Q 007818 526 RDSNMWEEAGKVRKMME 542 (588)
Q Consensus 526 ~~~g~~~~A~~~~~~~~ 542 (588)
...|++++|++.+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 78888888887766554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0093 Score=55.09 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=87.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC-CchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHH
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG-GLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDL 458 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~ 458 (588)
.+..|...|++..|-..+ ..+...|... |++++|.+.|++..+.+..... ..++..++..
T Consensus 100 A~~~y~~~G~~~~aA~~~---------------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCL---------------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHH---------------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 344555555555554444 4455567777 8999999999998765322222 3556778889
Q ss_pred HHhcCChHHHHHHHHhCC---CC-C----CHh-HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC--C---chHHHHHHH
Q 007818 459 LGRSGLLEEAEQLIRSMP---MA-A----DVV-VWGALFFACRLHGNVSIGERAAMKLLELDPQD--S---GIYVLLANM 524 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~---~~-~----~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~---~~~~~l~~~ 524 (588)
+.+.|++++|.++|++.. .+ + +.. .+...+-.+...||...|...+++.....|.= + .....|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 999999999999999762 11 1 121 23333445667899999999999999998852 2 234455555
Q ss_pred HHc--cCChHHHHHHHHHH
Q 007818 525 YRD--SNMWEEAGKVRKMM 541 (588)
Q Consensus 525 ~~~--~g~~~~A~~~~~~~ 541 (588)
+-. ...+++|..-|+.+
T Consensus 245 ~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHTT-CCCHHHHCHHHTTS
T ss_pred HHhCCHHHHHHHHHHHccc
Confidence 543 23455555555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.069 Score=49.74 Aligned_cols=83 Identities=14% Similarity=0.094 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHH
Q 007818 218 ANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297 (588)
Q Consensus 218 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 297 (588)
.+..+.-+...|+...|.++-.+..=++..-|-..+.+++..++|++-.++-.. +..+..|..++..|.+.|+..+|.
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHHH
Confidence 344455555566666666666666555666666666666666666655554432 334455555566665555555555
Q ss_pred HHHHH
Q 007818 298 ALFHE 302 (588)
Q Consensus 298 ~~~~~ 302 (588)
.++..
T Consensus 258 ~yI~k 262 (319)
T PF04840_consen 258 KYIPK 262 (319)
T ss_pred HHHHh
Confidence 55543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00017 Score=40.58 Aligned_cols=29 Identities=34% Similarity=0.571 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVG 408 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 408 (588)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 57777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0014 Score=60.29 Aligned_cols=129 Identities=12% Similarity=0.084 Sum_probs=101.5
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh-cCChHHHHHHHHhCC--CCCCHhHHHHHHHH
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR-SGLLEEAEQLIRSMP--MAADVVVWGALFFA 490 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 490 (588)
.+|..++...-+.+..+.|+.+|.++.+ .-..+..+|...+..-.. .++.+.|.++|+..- ...+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4677788888888889999999999986 333455666666666444 567777999999873 34577889999998
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDS---GIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+...|+.+.|..+|++++..-|.+. .+|..++..-.+.|+.+...++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998877644 58999999999999999999999999765
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.14 Score=51.40 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=74.8
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 427 (588)
.+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..+++++-.++-+... .+.-|..+..+|.+.|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~ 758 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG 758 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence 3445555566677888888888888887887777777778888887776655544322 2556677777888888
Q ss_pred chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 007818 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLI 472 (588)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 472 (588)
+.++|..++-+.... .....+|.+.|++.+|.++-
T Consensus 759 n~~EA~KYiprv~~l----------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 759 NKDEAKKYIPRVGGL----------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cHHHHhhhhhccCCh----------HHHHHHHHHhccHHHHHHHH
Confidence 888888777666421 14566777777777776654
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0048 Score=50.25 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=95.7
Q ss_pred hhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC---CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--
Q 007818 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP---MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ-- 513 (588)
Q Consensus 439 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-- 513 (588)
..+.....|+...-..|..++.+.|+..+|...|++.- ..-|...+..+..+....+++..|...++++.+.+|.
T Consensus 79 a~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r 158 (251)
T COG4700 79 ATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFR 158 (251)
T ss_pred HHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccC
Confidence 33333556888888889999999999999999999873 4468889999999999999999999999999999985
Q ss_pred CCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCce
Q 007818 514 DSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGC 552 (588)
Q Consensus 514 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 552 (588)
.|.....++++|...|++.+|...|+.+..--..+...+
T Consensus 159 ~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~ 197 (251)
T COG4700 159 SPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARI 197 (251)
T ss_pred CCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHH
Confidence 677888999999999999999999999987654444333
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0017 Score=54.71 Aligned_cols=118 Identities=18% Similarity=0.245 Sum_probs=83.0
Q ss_pred CCCcccHHHHHHHHH-----ccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHH
Q 007818 76 RPDNFTYPLLFKVCA-----SLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNS 150 (588)
Q Consensus 76 ~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 150 (588)
..+..+|..++..+. +.|.++-....+..|.+-|+..|..+|+.|++++=+ |.+- -..+ +.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~-----------fQ~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNF-----------FQA 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccH-----------HHH
Confidence 356667777777665 557888888999999999999999999999998753 3321 0111 111
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCCh-hHHHHHHHHHHH
Q 007818 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDL-NLGREIHWYISE 208 (588)
Q Consensus 151 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~ 208 (588)
+.-.| -.+-+-|++++++|...|+.||..|+..++..+++.+.. .+..++.-.|.+
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 11111 134467999999999999999999999999999887653 344444444444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0002 Score=49.59 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=28.9
Q ss_pred cCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
+.|++++|.++|+.+... .+.+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456666666666666653 2334555556666666666666666666665
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.016 Score=56.62 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHh
Q 007818 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLAL 390 (588)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 390 (588)
+..+...+...+-+...+..|.++|..+-+. ..+++.....+++.+|..+-+..++--...|..-.+-++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 4445555555566677788888888877654 5678888999999999999988886333333333333333
Q ss_pred cCChHHH
Q 007818 391 HGKALDA 397 (588)
Q Consensus 391 ~~~~~~a 397 (588)
..++++|
T Consensus 817 ~DrFeEA 823 (1081)
T KOG1538|consen 817 NDRFEEA 823 (1081)
T ss_pred hhhHHHH
Confidence 3333333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0016 Score=58.62 Aligned_cols=97 Identities=8% Similarity=0.041 Sum_probs=45.7
Q ss_pred HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC-CHhHHHHH
Q 007818 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK---LKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAA-DVVVWGAL 487 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l 487 (588)
|...+....+.|++++|...|+.+.+.+ |-+ +..+..++.+|...|++++|...|+.+. ..| ....+..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4443433344566666666666665532 111 2344455555555555555555555442 111 12233333
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
+..+...|+.++|...++++++..|++
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 444444555555555555555555543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00072 Score=63.88 Aligned_cols=65 Identities=15% Similarity=-0.024 Sum_probs=56.4
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG---IYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+...+..+..++...|++++|+..++++++++|+++. +|++++.+|..+|+.++|++.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678888888888999999999999999999998874 4889999999999999999999998875
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00027 Score=43.67 Aligned_cols=42 Identities=36% Similarity=0.442 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
.++..+..++...|++++|+++++++++..|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357778889999999999999999999999999999888864
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.015 Score=56.77 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC
Q 007818 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 295 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 374 (588)
+.+.-+++++++|-.|+.... ...|+-.|.+.+|-++|.+- |.. +..+.+|....-++.|.+++....
T Consensus 618 ~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCC
Confidence 344445666666666665432 33445566666666665422 211 233344444444444444443322
Q ss_pred C--------------CCcchHHHHHHHHHhcCChHHHHHHHHH------HHHCC--C-CCCHHHHHHHHHHhccCCchHH
Q 007818 375 E--------------RNSLTYTAIIGGLALHGKALDAISYFSE------MIGVG--L-MPDEITFLGILSACCHGGLVDE 431 (588)
Q Consensus 375 ~--------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~--~-~p~~~~~~~l~~~~~~~~~~~~ 431 (588)
. .+..--.+-...+...|+.++|..+.-+ +.+-+ + ..+..+...+...+.+...+.-
T Consensus 686 ~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred hHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccch
Confidence 1 0111112334445555666555544311 11111 1 2233455555556666667777
Q ss_pred HHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007818 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476 (588)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (588)
|.++|.++-. ...+++.....+++.+|..+-++.+
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 7788777754 2456777788888888888888775
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0024 Score=47.37 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhcCCC-CCCcccHHHHHHHHHccC--------ChhhHHHHHHHHHHhcCCCChh
Q 007818 45 SWNVAIRGFLETGKMREAVDLYKQMLRNGGT-RPDNFTYPLLFKVCASLG--------LRFLGYEIFGHVLKLGFDVDMY 115 (588)
Q Consensus 45 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~ 115 (588)
+....|..+...+++.....+|+.+++ .|+ -|+..+|+.++.+.++.. .+-....+++.|+..+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkR-N~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKR-NGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHh-cCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 344567777888999999999999999 788 899999999999887543 3456788999999999999999
Q ss_pred HHHHHHHHHHh
Q 007818 116 VHNAVIHVFVS 126 (588)
Q Consensus 116 ~~~~l~~~~~~ 126 (588)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.12 Score=48.25 Aligned_cols=121 Identities=16% Similarity=0.133 Sum_probs=89.2
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL 428 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 428 (588)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..+++++-..+... +-++..|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3445566677788889999998888888888999999999999999877665432 2345788889999999999
Q ss_pred hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHH
Q 007818 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFF 489 (588)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 489 (588)
..+|..+..++.. ..-+..|.++|++.+|.+.--+.. |...+..+..
T Consensus 253 ~~eA~~yI~k~~~-----------~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~ 299 (319)
T PF04840_consen 253 KKEASKYIPKIPD-----------EERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILK 299 (319)
T ss_pred HHHHHHHHHhCCh-----------HHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHH
Confidence 9998888777321 345677888899988887755543 4444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0035 Score=59.98 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=81.0
Q ss_pred CCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHh--CCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC----CCcch
Q 007818 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE--NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE----RNSLT 380 (588)
Q Consensus 307 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~ 380 (588)
+.+.+...+..++..+....+++.+..++-..... ....-..+..++++.|...|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556667777777777777777777777666554 2222344455777777777777777777766443 67777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 426 (588)
++.|++.+.+.|++..|.++...|...+...++.|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777666666666666666655543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00051 Score=47.69 Aligned_cols=65 Identities=18% Similarity=0.176 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhC-CHHHHHHHHHHHhccCC
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHG-NVSIGERAAMKLLELDP 512 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p 512 (588)
+...|..++..+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3566777888888888888888888776 3344 4667777777888888 68899999999888887
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0034 Score=50.40 Aligned_cols=83 Identities=8% Similarity=-0.061 Sum_probs=31.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
+...|++++|..+|+.+..-. +-+...|..|..++-..|++++|+..|...... . +.++..+-.+..++...|+.+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHHHHHHHHHHHcCCHHH
Confidence 334444444444444433321 112223333333333444444444444444332 1 2223333334444444444444
Q ss_pred HHHHHH
Q 007818 468 AEQLIR 473 (588)
Q Consensus 468 A~~~~~ 473 (588)
|.+-|+
T Consensus 122 A~~aF~ 127 (157)
T PRK15363 122 AIKALK 127 (157)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0023 Score=61.12 Aligned_cols=118 Identities=10% Similarity=0.010 Sum_probs=79.9
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHhccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHH
Q 007818 111 DVDMYVHNAVIHVFVSCGDLGLACNVFDESCV------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMI 184 (588)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 184 (588)
+.+......+++.+....+++.+..++-+... --..+.+++++.|...|..+.++++++.=...|+=||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444445555555555566666665544211 122345678888888888888888888877888888888888
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhc
Q 007818 185 GMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228 (588)
Q Consensus 185 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 228 (588)
.||..+.+.|++..|.++...|...+...+..++..-+..|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888777776666666665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0065 Score=47.03 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=63.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCC-ChHHHHHHHHHH
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDE--ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP-KLKHYSCMVDLL 459 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 459 (588)
.+..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++.....+.-.+ +......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3556677788888899999888888765543 3566677778888888888888888876421100 222333345567
Q ss_pred HhcCChHHHHHHHHh
Q 007818 460 GRSGLLEEAEQLIRS 474 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~ 474 (588)
...|+.++|.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 788888888877644
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.066 Score=47.95 Aligned_cols=67 Identities=10% Similarity=-0.017 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCccc----HHHHHHHHHccCChhhHHHHHHHHHHhcC
Q 007818 41 PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFT----YPLLFKVCASLGLRFLGYEIFGHVLKLGF 110 (588)
Q Consensus 41 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 110 (588)
.+...+-.....+...|++++|++.|+.+.. .-|+... .-.+..++.+.++++.|...+++.++..+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~---~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDN---RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3444444556666788999999999999987 3344322 13455677789999999999999988753
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0034 Score=51.44 Aligned_cols=69 Identities=28% Similarity=0.270 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH-----hcCCccCCc
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME-----ERGVEKTPG 551 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 551 (588)
....++..+...|++++|...+++++..+|-+...+..++.+|...|+..+|.++|+++. +.|++|++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 445566677889999999999999999999999999999999999999999999999884 357766553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0048 Score=55.59 Aligned_cols=94 Identities=11% Similarity=0.022 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC---chHHHHH
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS---GIYVLLA 522 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~ 522 (588)
.|..-...+.+.|++++|...|+.+. .-|+ ...+.-+...+...|++++|...|+++++..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444456678888887777763 2233 23555666677778888888888888887777643 4455557
Q ss_pred HHHHccCChHHHHHHHHHHHhc
Q 007818 523 NMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
.++...|++++|.++++.+.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888888877654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.19 Score=47.36 Aligned_cols=140 Identities=15% Similarity=0.130 Sum_probs=78.6
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE-----RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI-TFLGILS 421 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~ 421 (588)
.+|...+..-.+..-++.|..+|.+..+ +++..+++++.-++ .|++.-|..+|+--... -||.. .....+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 3455555555555556666666655543 34555666665544 35566666777654443 33333 2334455
Q ss_pred HhccCCchHHHHHHHHHhhhhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhHHHHHHHHHH
Q 007818 422 ACCHGGLVDEGRKYFAQMSSIFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALFFACR 492 (588)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~ 492 (588)
-+...++-+.|..+|+.... .+..+ ...|..+++.-..-|+...+..+-+++. .-|...+.....+.|.
T Consensus 475 fLi~inde~naraLFetsv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 475 FLIRINDEENARALFETSVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 55666777777777775554 22223 4567777777777777777666655553 2244444444444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.093 Score=49.37 Aligned_cols=183 Identities=17% Similarity=0.096 Sum_probs=104.8
Q ss_pred HHHHHHhHhcCChhHHHHHhccCCCC-------CcchHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 351 TALVDMYAKCGNIAKALQVFHEMPER-------NSLTYTAIIGGLAL---HGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
..++-+|....+++...++.+.+... ....-...+-++.+ .|+.++|++++..+....-.+++.++..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34445566667777777777766643 11112223334445 678888888888755554567777777766
Q ss_pred HHhcc---------CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC-hH---HHHHHH---Hh-C----C--C
Q 007818 421 SACCH---------GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL-LE---EAEQLI---RS-M----P--M 477 (588)
Q Consensus 421 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~-~----~--~ 477 (588)
..|-. ....++|+..|.+.-+. .|+...--.++-.+...|. ++ +..++- .. + . .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~---~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI---EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC---CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 65532 23467777777766542 3443222222333333342 21 222222 11 1 1 2
Q ss_pred CCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 478 AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 478 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
..+...+.+++.++.-.|++++|.+.++++.++.|+. +-..+ .-+=+.+++++.+...+
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~-W~l~S----------t~~ni~Li~~~~~~~~~ 360 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA-WELES----------TLENIKLIRHFRKRPEE 360 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc-hhHHH----------HHHHHHHHHHHhcCCCC
Confidence 2466677888899999999999999999999998752 22222 22345566666655443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.19 Score=46.46 Aligned_cols=288 Identities=12% Similarity=0.030 Sum_probs=159.0
Q ss_pred hHHHHHHHHHh--CCChHHHHHHHHHHHhcCCCCCCcccHHHHHH--HHHccCChhhHHHHHHHHHHhcCCCChhH--HH
Q 007818 45 SWNVAIRGFLE--TGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK--VCASLGLRFLGYEIFGHVLKLGFDVDMYV--HN 118 (588)
Q Consensus 45 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~ 118 (588)
.|.+|-.++.. .|+-..|.++-.+..+ -+..|....-.++. +..-.|+.+.|.+-|+.|... |.... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLR 158 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLR 158 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHH
Confidence 46666666554 5677778877776653 14555555555553 334678999999999998862 32221 22
Q ss_pred HHHHHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCC-CCCCcch--HHHHHHHHhc
Q 007818 119 AVIHVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER-VEPDEVT--MIGMVSACAQ 192 (588)
Q Consensus 119 ~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~--~~~ll~~~~~ 192 (588)
.|.-.--+.|+.+.|...-++. -+.-...+...+...+..|+|+.|+++++.-+... +.++..- -..|+.+-+.
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 2222234578888777776652 23345678888889999999999999988765542 3344321 1122222111
Q ss_pred ---cCChhHHHHHHHHHHHhCCCCCh-hhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHH---
Q 007818 193 ---LEDLNLGREIHWYISESGLTLTV-PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIA--- 265 (588)
Q Consensus 193 ---~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a--- 265 (588)
..+...|...-.+..+. .|+. ..-..-.+++.+.|+..++-.+++.+=+..+..-...+....+.|+....
T Consensus 239 s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlk 316 (531)
T COG3898 239 SLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLK 316 (531)
T ss_pred HHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHH
Confidence 12344444444444333 3332 22234456777788888888887777544443333344444455543221
Q ss_pred -HHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHc-ccCChhHHHHHHHHHHHh
Q 007818 266 -RKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS-QLGALDDGIWIHRFIEKE 341 (588)
Q Consensus 266 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~ 341 (588)
.+-+..|+.++..+...+..+-...|++..|..--+.... ..|....|..+...-. ..|+-.++...+.+..+.
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 1234445555555555555555566666555554444443 2455555555554432 335555555555555443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0033 Score=57.80 Aligned_cols=129 Identities=11% Similarity=-0.049 Sum_probs=89.2
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHh---hhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC-------CCC-CCH
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQM---SSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSM-------PMA-ADV 481 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~-~~~ 481 (588)
..|..+...|.-.|+++.|+...+.- .+.+|-... ...+..+..++.-.|+++.|.+.|+.. ..+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666777777788999888765542 222232222 355677888888889999998888754 111 234
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLELD------PQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
.+.-++..+|.-..++++|+.+..+=+.+. -....++.+|+.++...|..++|+.+.+...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456677778878888888988877654322 2245678889999999999999988877664
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00077 Score=48.17 Aligned_cols=62 Identities=16% Similarity=0.081 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhcc----CCC---CCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLEL----DPQ---DSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.++..+...+...|++++|+..+++++++ .++ -..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35566666677777777777777777643 222 245688899999999999999999998754
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.029 Score=50.08 Aligned_cols=104 Identities=16% Similarity=0.136 Sum_probs=79.9
Q ss_pred CCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC---ChHHHHHHHHhC-CCCC-CHhHH
Q 007818 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG---LLEEAEQLIRSM-PMAA-DVVVW 484 (588)
Q Consensus 410 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~-~~~~~ 484 (588)
+-|...|..|..+|...|+.+.|...|.+..+. .++++..+..+..++..+. ...++.++|+++ ..+| +..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 556778999999999999999999999998873 3456667777777655433 467788888887 3455 55566
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 485 GALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
.-+...+...|++.+|...++.+++..|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 6677778899999999999999999888654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.027 Score=48.85 Aligned_cols=132 Identities=11% Similarity=0.062 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChH-----HHHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK-----HYSCM 455 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l 455 (588)
-+.++..+.-.|.+.-.+..+.+.++...+.++.....+.+.-.+.||.+.|...|++..+. .-..+.. .....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhh
Confidence 34455555556666666677777766554445556666666666777777777777766543 2222222 22222
Q ss_pred HHHHHhcCChHHHHHHHHhCCCC-C-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 456 VDLLGRSGLLEEAEQLIRSMPMA-A-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
...|.-+.++.+|...+.++... | ++...+.-.-...-.|+...|++.++.+++..|.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 23344455566666666555321 2 3333333333334456666666666666666664
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.2 Score=46.78 Aligned_cols=85 Identities=11% Similarity=0.000 Sum_probs=41.3
Q ss_pred HHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcC
Q 007818 388 LALHGKALDAISYFSEMIGV---GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSG 463 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 463 (588)
..+.|++..|.+.|.+.+.. +..|+...|.....+..+.|+..+|+.-.+...+ +.+. ...+..-..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 34555666666666655542 2233334455555555556666666655555543 1121 222223333444555
Q ss_pred ChHHHHHHHHhC
Q 007818 464 LLEEAEQLIRSM 475 (588)
Q Consensus 464 ~~~~A~~~~~~~ 475 (588)
+|++|.+-++..
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 556665555543
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0023 Score=44.93 Aligned_cols=65 Identities=18% Similarity=0.163 Sum_probs=50.1
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 456 VDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
...|.+.+++++|.++++++. ..| +...|......+...|++++|...++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 356778888888888888773 445 55667777778888999999999999999999977655443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.02 Score=45.18 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=65.6
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCC----CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch---HHHHHHHH
Q 007818 454 CMVDLLGRSGLLEEAEQLIRSMPM----AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI---YVLLANMY 525 (588)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~ 525 (588)
.-.....+.|++++|.+.|+.+.. .| ....-..++.++.+.++++.|...+++.+++.|.++.+ +...+-++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 344455678888888888888742 22 34466677888899999999999999999999987654 44445555
Q ss_pred HccCC---------------hHHHHHHHHHHHhc
Q 007818 526 RDSNM---------------WEEAGKVRKMMEER 544 (588)
Q Consensus 526 ~~~g~---------------~~~A~~~~~~~~~~ 544 (588)
.++.. ..+|...|+.+.+.
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 55554 67777778777654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.042 Score=47.70 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHH-----HHH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGT-----ALV 354 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~ 354 (588)
.+.++.++...|.+.-....+++.++...+.+......+.+.-.+.|+.+.|...|+...+..-..+....+ ...
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 455666666777777788888888887655667777778888888888888888888776654333333333 333
Q ss_pred HHhHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007818 355 DMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGV 407 (588)
Q Consensus 355 ~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 407 (588)
..|.-.+++..|...+.++... ++...|.-.-+..-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556677788888888777643 3344444444444467788888888888775
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0063 Score=51.40 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=69.6
Q ss_pred CCcccHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHccc----------------CChhHHHH
Q 007818 275 KYVVPWNAIIGGYVQ-----AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL----------------GALDDGIW 333 (588)
Q Consensus 275 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------~~~~~a~~ 333 (588)
.+..+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|+..+-+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 444455555655553 477888888899999999999999999999987542 23456889
Q ss_pred HHHHHHHhCCCCcchHHHHHHHHhHhcCC
Q 007818 334 IHRFIEKENFNLNVVLGTALVDMYAKCGN 362 (588)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 362 (588)
++++|...|+-||..++..+++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.018 Score=50.18 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=38.8
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHccCChHHHHH
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDSG---IYVLLANMYRDSNMWEEAGK 536 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~ 536 (588)
+..-|.+.|.+..|..-++.+++..|+.+. ++..++.+|.+.|..+.|..
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 445578999999999999999999998544 46778889999999885543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.065 Score=46.66 Aligned_cols=141 Identities=14% Similarity=0.088 Sum_probs=72.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCCh-HHHHHHHHHH
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGLM-P-DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL-KHYSCMVDLL 459 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~ 459 (588)
.....+...|++.+|...|+.+...... | -......++.++.+.|+++.|...++...+.+.-.|.. ..+-.++.++
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 3444555666677777777666654211 0 11244455566666666666666666666643222221 1111111111
Q ss_pred HhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch-----------------HHHHH
Q 007818 460 GRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI-----------------YVLLA 522 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~ 522 (588)
... ... .+ ......+...+|...++.+++..|+++.+ -..++
T Consensus 90 ~~~--~~~---~~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 90 YKQ--IPG---IL----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHH--HHH---HH-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHh--Ccc---ch----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 000 00 00112234456777777777777776544 23478
Q ss_pred HHHHccCChHHHHHHHHHHHhc
Q 007818 523 NMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..|.+.|.+..|..-++.+.+.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH
Confidence 8999999999999999999865
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0066 Score=56.20 Aligned_cols=127 Identities=15% Similarity=0.100 Sum_probs=96.3
Q ss_pred HHHHHhccCCchHHHHHHHHHhhhhcC----CCC---------ChHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHh
Q 007818 418 GILSACCHGGLVDEGRKYFAQMSSIFR----LSP---------KLKHYSCMVDLLGRSGLLEEAEQLIRSM-PM-AADVV 482 (588)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~ 482 (588)
.-...+.+.|++..|..-|+++..... .++ -..++..+..+|.+.+++.+|++..+.. .. +++..
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 346678899999999999988655322 111 1345667788888999999998888776 33 35677
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHH-HHHHHHHHhc
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA-GKVRKMMEER 544 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 544 (588)
.+-.-..++...|+++.|+..|++++++.|.|..+-..|+.+-.+...+++. .++|..|...
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777788888999999999999999999999988888888877776655544 7788888654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.05 Score=51.98 Aligned_cols=118 Identities=12% Similarity=0.080 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHhcc---------CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc
Q 007818 394 ALDAISYFSEMIG-VGLMPDE-ITFLGILSACCH---------GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462 (588)
Q Consensus 394 ~~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (588)
.+.|+.+|.+... ..+.|+- ..|..+..++.. ..+..+|.++-++..+ --+.|+.....+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 3455666666551 1133432 344444444321 1122334444444443 2233344444444444555
Q ss_pred CChHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 463 GLLEEAEQLIRSMP-MAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 463 g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
|+++.|..+|++.. ..|+ ...|......+.-.|+.++|.+.++++++++|.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 55555555555542 3343 333433444444555555555555555555554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.16 Score=50.52 Aligned_cols=160 Identities=12% Similarity=0.072 Sum_probs=103.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------HHHHHHHHhcc----CCchHHHHHHHHHhhhhcCCCCChH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI------TFLGILSACCH----GGLVDEGRKYFAQMSSIFRLSPKLK 450 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 450 (588)
+..+++...-.|+-+.+++.+.+..+.+---.+. .|..++..++. ..+.+.|.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3444555555666666666666654432111111 23333433332 44678899999999874 35555
Q ss_pred HHH-HHHHHHHhcCChHHHHHHHHhCCC-C-----CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHH-H
Q 007818 451 HYS-CMVDLLGRSGLLEEAEQLIRSMPM-A-----ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL-A 522 (588)
Q Consensus 451 ~~~-~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l-~ 522 (588)
.|. .-.+.+...|+.++|.+.|++... + .....+..+...+....++++|...+.++.+.+.-+...|..+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 444 345567788999999999997531 1 1344556677778889999999999999998776555555544 5
Q ss_pred HHHHccCCh-------HHHHHHHHHHHh
Q 007818 523 NMYRDSNMW-------EEAGKVRKMMEE 543 (588)
Q Consensus 523 ~~~~~~g~~-------~~A~~~~~~~~~ 543 (588)
-++...|+. ++|.+++.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 555678888 888888888754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.11 Score=46.27 Aligned_cols=121 Identities=14% Similarity=0.054 Sum_probs=81.1
Q ss_pred HhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHH---HHHHHHhhCCHH
Q 007818 422 ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGA---LFFACRLHGNVS 498 (588)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~ 498 (588)
.....|++.+|..+|...... .+-+...-..++.+|...|+.+.|..++..++.+-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 455678888888888888763 233456666788888888888888888888875433332222 222233333322
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+. ..++.-+..+|+|...-..++..+...|+.++|.+.+=.+.+++
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 22 23344556788888888889999999999999988877776553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0048 Score=43.99 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-----CC---CC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP-----MA---AD-VVVWGALFFACRLHGNVSIGERAAMKLLEL 510 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (588)
.+++.+...|...|++++|++.+++.. .. |+ ..++..+...+...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345556666666666666666665441 11 22 345566666677777777777777776643
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.78 Score=43.62 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHH----HHHHHHH--HhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 394 ALDAISYFSEMIGVGLMPDEI----TFLGILS--ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 394 ~~~a~~~~~~~~~~~~~p~~~----~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
...-+.+-+-..+.|++|-.. .-+.+.+ .+...|++.++.-.-..+. .+.|++.+|..++-++....++++
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHH
Confidence 444455555566678777544 3333433 3456899998887766665 567999999999999999999999
Q ss_pred HHHHHHhCCCCCCHhHHH
Q 007818 468 AEQLIRSMPMAADVVVWG 485 (588)
Q Consensus 468 A~~~~~~~~~~~~~~~~~ 485 (588)
|.+++..++ |+...+.
T Consensus 514 A~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 514 AWEYLQKLP--PNERMRD 529 (549)
T ss_pred HHHHHHhCC--CchhhHH
Confidence 999999986 4444443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.032 Score=51.89 Aligned_cols=128 Identities=9% Similarity=-0.063 Sum_probs=93.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC-----CCCCC---------HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCCh
Q 007818 384 IIGGLALHGKALDAISYFSEMIGV-----GLMPD---------EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 449 (588)
-...|.+.|++..|...|++.... +..+. ..++..+..++.+.+++..|++..++... --+++.
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~ 291 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNV 291 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCch
Confidence 456788999999999999986652 22221 12566778888899999999999999987 446778
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHh-h-CCHHHHHHHHHHHhccCCC
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADVVVWGALFFACRL-H-GNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~-~-~~~~~A~~~~~~~~~~~p~ 513 (588)
.....-..++...|+++.|+..|+++ ...|+......-+..|.+ . ...+...++|..|+...+.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 88888889999999999999999987 466766655555555433 2 2344557778887765553
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.14 Score=39.43 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=83.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
+...|..++..++..+.... .+..-++.++--...+-+=+-..+.++.+-+-+.+. .+|+...
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHH
Confidence 44567777778877777663 344555655555544445555555555554422211 2333333
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 468 AEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
....+-.+. .+.......+.....+|.-++-.+++..+.+.+..+|..+.-++.+|.+.|+..++.+++.++-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 333333321 233445556677788999999999999998766668999999999999999999999999999999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.26 Score=44.02 Aligned_cols=172 Identities=14% Similarity=0.069 Sum_probs=113.8
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcC
Q 007818 365 KALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFR 444 (588)
Q Consensus 365 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 444 (588)
...++++....+....-..-.......|++.+|..+|+...... +-+...-..++.+|...|+.+.|..++..+-.. -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 33444444443322222223344567889999999999888763 334566777888999999999999999887653 1
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC--CCCchHHHH
Q 007818 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDP--QDSGIYVLL 521 (588)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l 521 (588)
-.........-+..+.+.....+..++-++....| |...-..+...+...|+.+.|...+-.+++.+- .|...-..+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11112222334556666666666666666666566 666777788888889999999988888877653 467777888
Q ss_pred HHHHHccCChHHHHHHH
Q 007818 522 ANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 522 ~~~~~~~g~~~~A~~~~ 538 (588)
+..+.-.|.-+.+...+
T Consensus 279 le~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 279 LELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 88887777554444333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.036 Score=48.84 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=63.1
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHhC----CCCC-CHhHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK---LKHYSCMVDLLGRSGLLEEAEQLIRSM----PMAA-DVVVWGA 486 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~ 486 (588)
.|+..+. +.+.|++..|...|....+. ++-+ +..+..|...+...|++++|..+|..+ +..| -+..+..
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3444443 33556688888888877773 3222 345556777777777777777777665 2223 2355666
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCCch
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGI 517 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (588)
+.......|+.++|...++++.+..|+.+.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 6666667777777777777777777765443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.032 Score=49.14 Aligned_cols=91 Identities=19% Similarity=0.193 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-------CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC---CchHHH
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMP-------MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD---SGIYVL 520 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~ 520 (588)
.|+.-++ +.+.|++.+|...|.... ..|+...| |..++...|+++.|...|..+.+-.|++ |..+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 5665444 457888999999998762 22455555 6778899999999999999999988775 456888
Q ss_pred HHHHHHccCChHHHHHHHHHHHhc
Q 007818 521 LANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
|+.+..+.|+.++|..+|+++.++
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 999999999999999999999875
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.069 Score=40.89 Aligned_cols=90 Identities=21% Similarity=0.153 Sum_probs=65.4
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC----chHHHHHHHHHccCC
Q 007818 457 DLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS----GIYVLLANMYRDSNM 530 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 530 (588)
-++...|+.+.|++.|.+. ..-| .+..|+.-..++.-+|+.++|..-+.+++++.-+.. .+|..-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3456778888888887765 2223 566777777788888888888888888887764322 246667778888888
Q ss_pred hHHHHHHHHHHHhcCC
Q 007818 531 WEEAGKVRKMMEERGV 546 (588)
Q Consensus 531 ~~~A~~~~~~~~~~~~ 546 (588)
-+.|..-|+...+.|.
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 8888888888887774
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.095 Score=42.56 Aligned_cols=84 Identities=10% Similarity=0.026 Sum_probs=35.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHH
Q 007818 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 468 (588)
...|++++|..+|.-+.-.+ .-+..-+..|..++-..+++++|...|...... . ..|+..+-....+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHhCCHHHH
Confidence 34444555555444444332 222333333444444444555555544444332 1 12222233344444455555555
Q ss_pred HHHHHhC
Q 007818 469 EQLIRSM 475 (588)
Q Consensus 469 ~~~~~~~ 475 (588)
+..|+..
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5544444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.5 Score=44.62 Aligned_cols=166 Identities=10% Similarity=-0.046 Sum_probs=107.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHhcc---CCchHHHHHHHHHhhhhcCCCCChHHH
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVG---LMPDEITFLGILSACCH---GGLVDEGRKYFAQMSSIFRLSPKLKHY 452 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 452 (588)
.+...++-+|....+++..+++.+.+...- +.-....-....-++.+ .|+.++|.+++..+... ...+++.++
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHH
Confidence 344456667899999999999999998741 11122233334455666 89999999999996555 667888888
Q ss_pred HHHHHHHH----h-----cCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHhhCC-HH---HHHHHH---HHHh-cc---C
Q 007818 453 SCMVDLLG----R-----SGLLEEAEQLIRSM-PMAADVVVWGALFFACRLHGN-VS---IGERAA---MKLL-EL---D 511 (588)
Q Consensus 453 ~~l~~~~~----~-----~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~-~~---~A~~~~---~~~~-~~---~ 511 (588)
..+++.|- . ....++|.+.|.+. ..+|+..+-..++..+...|. ++ +..++. ..++ +. .
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 88887763 2 22467888888876 455665444333333333332 22 222222 1111 11 1
Q ss_pred C-CCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 512 P-QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 512 p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+ .+=+.+..++.+..-.|++++|.+..+++.+..
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2 244456678899999999999999999998763
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.8 Score=43.55 Aligned_cols=156 Identities=9% Similarity=0.029 Sum_probs=69.6
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCC-----cchHHHHHHHHHhcCCHHHHHH
Q 007818 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT-----VVSCTTMIVGYAKFGFLDIARK 267 (588)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~ 267 (588)
-|++++|+++|-++-.. ...+..+.+.|+|-...++++.--..+ ...|+.+...+.....+++|.+
T Consensus 747 ~g~feeaek~yld~drr---------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR---------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchh---------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666554443 223455556666665555555432211 1245555555555555555555
Q ss_pred HhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc
Q 007818 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347 (588)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 347 (588)
.+..-.. -...+.++.+...+++-..+... ++.|....-.+...+...|.-++|.+.+-+ .+.+
T Consensus 818 yY~~~~~-----~e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p--- 881 (1189)
T KOG2041|consen 818 YYSYCGD-----TENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP--- 881 (1189)
T ss_pred HHHhccc-----hHhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc---
Confidence 5443221 11223333333333333222222 222333344444555555555555443311 1111
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCC
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPER 376 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 376 (588)
.+.+..|...+++.+|.++-+...-|
T Consensus 882 ---kaAv~tCv~LnQW~~avelaq~~~l~ 907 (1189)
T KOG2041|consen 882 ---KAAVHTCVELNQWGEAVELAQRFQLP 907 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhccch
Confidence 23344455555566666555554433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.024 Score=46.91 Aligned_cols=60 Identities=20% Similarity=0.068 Sum_probs=33.8
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 485 GALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 485 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..-..+..+.+..+.|+.-..++++++|....++..-+.+|.+..++++|++-|+.+.+.
T Consensus 138 ~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 138 SNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 333344455555556666666666666655555555555666666666666666555543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.097 Score=47.24 Aligned_cols=160 Identities=16% Similarity=0.069 Sum_probs=117.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHH----HHHHHHHhcCC
Q 007818 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS----CMVDLLGRSGL 464 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 464 (588)
.-.|+..+|...++++.+. .+.|...+...-.+|.-.|+.+.-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888888899998886 466777888888889999999999999999887 4455654443 33445678999
Q ss_pred hHHHHHHHHhCC-CC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHccCChHHHHHHH
Q 007818 465 LEEAEQLIRSMP-MA-ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ----DSGIYVLLANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 465 ~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (588)
+++|++.-++.- +. .|..............|++.++.+...+--..-.. -...|-+.+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 999999998873 33 46666666666677888999999888776543322 1223556677778889999999999
Q ss_pred HHHHhcCCccCCc
Q 007818 539 KMMEERGVEKTPG 551 (588)
Q Consensus 539 ~~~~~~~~~~~~~ 551 (588)
++-.-....++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 9876655555554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.33 Score=47.58 Aligned_cols=155 Identities=12% Similarity=0.116 Sum_probs=97.3
Q ss_pred HHHHhCCChhHHHHHHH--HhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC
Q 007818 153 NGFVRSGFPREAIRLFR--DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK 230 (588)
Q Consensus 153 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 230 (588)
....-.++++++.++.+ ++.. .++ ......+++.+-+.|-.+.|+++.. |+ ..-.+...+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCC
Confidence 34455778888777665 2221 122 3446777778888888888887643 33 234556678899
Q ss_pred hhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007818 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310 (588)
Q Consensus 231 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 310 (588)
++.|.++.+... ++..|..|.....+.|+++-|++.|....+ |..|+-.|...|+.+...++.+.....|-
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-- 404 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD-- 404 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence 998888877665 556888888888888888888888888765 77777888888888887777777776651
Q ss_pred CHHHHHHHHHHHcccCChhHHHHHH
Q 007818 311 DAVTTVHCLSACSQLGALDDGIWIH 335 (588)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~ 335 (588)
++....++...|+.++..+++
T Consensus 405 ----~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 405 ----INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp ----HHHHHHHHHHHT-HHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHH
Confidence 344444444556666655554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.024 Score=32.34 Aligned_cols=32 Identities=34% Similarity=0.295 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 34445555666666666666666666666643
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.078 Score=43.34 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhh----hcCCCCChHH
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS----IFRLSPKLKH 451 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 451 (588)
..++..+...|++++|..+++.+.... +-+...+..++.++...|+...|.++|+.+.+ ..|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345555666777777777777776653 44556777777777777777777777666532 2466666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.13 Score=40.34 Aligned_cols=98 Identities=9% Similarity=0.054 Sum_probs=62.2
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 426 (588)
..++..++.++++.|+.+....+++..=..+... -...+. --......|+..+..+++.+|+..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~-------~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNG-------KKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCC-------ccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 3455666666777777666666665432211100 000000 011233578888888888888888
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
|++..|.++.+...+.++++.+...|..|+.-..
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 8888888888888888888777888887776443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.57 Score=45.07 Aligned_cols=81 Identities=14% Similarity=0.051 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHH
Q 007818 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIR 473 (588)
Q Consensus 395 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (588)
.+|.++.+...+.+ +-|+.....+..+....++++.|...|++.... .|+ ...|........-.|+.++|.+.++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L---~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH---STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc---CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444555555543 344445555555445555566666666655532 333 3344444444455566666666655
Q ss_pred h-CCCCC
Q 007818 474 S-MPMAA 479 (588)
Q Consensus 474 ~-~~~~~ 479 (588)
+ +..+|
T Consensus 397 ~alrLsP 403 (458)
T PRK11906 397 KSLQLEP 403 (458)
T ss_pred HHhccCc
Confidence 5 34444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.029 Score=42.82 Aligned_cols=55 Identities=22% Similarity=0.020 Sum_probs=52.0
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+....|+.+.|++.|.+++.+-|.++++|++-+.++.-+|+.++|++-+++..+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999775
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.021 Score=32.65 Aligned_cols=31 Identities=26% Similarity=0.163 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
.|..++..+...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555666666666777777777777666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.4 Score=38.87 Aligned_cols=63 Identities=17% Similarity=0.155 Sum_probs=48.1
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCCch---HHHHHHHHHccCChHHHHHHHHHHHhcCCccCC
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGI---YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTP 550 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 550 (588)
+..-|.+.|.+..|..-++++++.-|+.+.+ +..+..+|.+.|..++|.+.-+-+. .+.+.++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~-~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG-ANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH-hcCCCCc
Confidence 4456789999999999999999988775554 5566778999999999988766554 4444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.3 Score=40.91 Aligned_cols=150 Identities=13% Similarity=-0.032 Sum_probs=81.8
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC--hH
Q 007818 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP---DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK--LK 450 (588)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 450 (588)
....+|..++..+.+.|+++.|...+..+...+..+ .+.....-+......|+..+|...++..... ..... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567777888888888888888888877643221 3344444556666778888888888777762 11111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHhHHHHHHHHHHhh------CCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 451 HYSCMVDLLGRSGLLEEAEQL-IRSMPMAADVVVWGALFFACRLH------GNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
....+...+.. ..+..... ......+.-...+..+...+... +..+.+...|.++.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000112233333333333 78889999999999999988888888888
Q ss_pred HHHcc
Q 007818 524 MYRDS 528 (588)
Q Consensus 524 ~~~~~ 528 (588)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 77654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.45 Score=37.76 Aligned_cols=117 Identities=15% Similarity=0.049 Sum_probs=57.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc
Q 007818 385 IGGLALHGKALDAISYFSEMIGVGL--MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (588)
.....+.|++++|.+.|+.+...-. +-....-..++.++.+.+++++|...+++.++.+--.|+. .|.....++..-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 3344556666666666666655411 1112344555666666666666666666666542222221 233333333222
Q ss_pred CChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch
Q 007818 463 GLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517 (588)
Q Consensus 463 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (588)
...... +..+. ..-...+....|...|+++++..|+++.+
T Consensus 96 ~~~~~~---~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 96 EQDEGS---LQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHhhhH---Hhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 111111 11110 00011223567888899999999987543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.60 E-value=3.1 Score=42.41 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=83.3
Q ss_pred CCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHH
Q 007818 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFA 490 (588)
Q Consensus 411 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 490 (588)
-...+.+--+.-+...|+..+|.++-.+.+- ||...|..-+.+++..+++++-+++-++.+ .+..|.-+..+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~ 753 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA 753 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence 3344556666667778888888887766643 788888888889999999988888777664 25567777888
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHH
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (588)
|.++|+.++|..++-+.-.+ .-...+|.+.|++.+|.+.-
T Consensus 754 c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHH
Confidence 99999999998887655222 15678888888888887653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.44 Score=43.24 Aligned_cols=157 Identities=10% Similarity=0.022 Sum_probs=107.4
Q ss_pred HhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH----HHHhccCCchH
Q 007818 358 AKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI----LSACCHGGLVD 430 (588)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~~~~~ 430 (588)
-..|++.+|...++++.+ .|..+++-.-.+|.-.|+.+.-...+++.... ..|+...|..+ .-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345777777777777764 36677777888999999999999999888765 34555444333 33455789999
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-------HhHHHHHHHHHHhhCCHHHHHHH
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD-------VVVWGALFFACRLHGNVSIGERA 503 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~ 503 (588)
+|++.-++..+- -+.|.-.-.++...+...|++.++.+++.+-...-+ ...|. ..-.+...+.++.|+++
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH-~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWH-TALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHH-HHHhhhcccchhHHHHH
Confidence 999998888763 234455556778888899999999999887642211 11222 22234456899999999
Q ss_pred HHHHh--ccCCCCCchH
Q 007818 504 AMKLL--ELDPQDSGIY 518 (588)
Q Consensus 504 ~~~~~--~~~p~~~~~~ 518 (588)
|.+-+ +++.+|..+.
T Consensus 270 yD~ei~k~l~k~Da~a~ 286 (491)
T KOG2610|consen 270 YDREIWKRLEKDDAVAR 286 (491)
T ss_pred HHHHHHHHhhccchhhh
Confidence 97654 4556565443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.6 Score=38.75 Aligned_cols=196 Identities=19% Similarity=0.122 Sum_probs=110.8
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC-----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE-----RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS- 421 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~- 421 (588)
.........+...+++..+...+..... .....+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3444455555556666665555554431 233344455555556666666776666666543222 111222222
Q ss_pred HhccCCchHHHHHHHHHhhhhcCC--CCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC--HhHHHHHHHHHHhhCC
Q 007818 422 ACCHGGLVDEGRKYFAQMSSIFRL--SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD--VVVWGALFFACRLHGN 496 (588)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~ 496 (588)
.+...|+++.|...+.+.... .. ......+......+...++.+++...+.+.. ..++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 566677777777777776431 11 1123333333444556677777777776652 2222 4556666666667777
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
++.|...+.++....|.....+..++..+...|.++++...+++.....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777655556666666666666777777777765543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.51 Score=46.32 Aligned_cols=159 Identities=13% Similarity=0.147 Sum_probs=107.2
Q ss_pred HHHHHhCCChHHHHHHHH--HHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhC
Q 007818 50 IRGFLETGKMREAVDLYK--QMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSC 127 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (588)
.+...-.++++++.+..+ ++.. .++ ....+.++..+.+.|..+.|.++...-. .-.....+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~--~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~l 331 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP--NIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQL 331 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG--G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHC
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc--cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhc
Confidence 455566788999877765 2222 122 3447778888889999998887754332 235566789
Q ss_pred CChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHH
Q 007818 128 GDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYIS 207 (588)
Q Consensus 128 ~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 207 (588)
|+++.|.++.++.. +...|..|.....+.|+++-|.+.|.+... +..|+-.|...|+.+...++.+...
T Consensus 332 g~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 332 GNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp T-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999998876 666999999999999999999999988653 5667777888888888888877777
Q ss_pred HhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 208 ESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 208 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
..|- ++....++.-.|+.++..+++.+.
T Consensus 401 ~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 401 ERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6643 355566666678887777776554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.41 E-value=3.9 Score=42.32 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=56.5
Q ss_pred HHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCh
Q 007818 51 RGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL 130 (588)
Q Consensus 51 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (588)
.-+.+.|++++|...|-+-.. . +.| ..++.-+.....+..-..+++.+.+.|+ .+...-..|+.+|.+.++.
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~-~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIG-F-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcc-c-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcch
Confidence 344556666666666655433 1 222 2244445555555556666666666665 3444455666777777776
Q ss_pred hHHHHHhccCCCCCc-ccHHHHHHHHHhCCChhHHHHH
Q 007818 131 GLACNVFDESCVRNL-VSWNSLINGFVRSGFPREAIRL 167 (588)
Q Consensus 131 ~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~ 167 (588)
++-.+..+....... .-....+..+.+.+-.+.|.-+
T Consensus 448 ~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 448 EKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 666666655442111 1233444444444444444444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.15 Score=46.62 Aligned_cols=129 Identities=11% Similarity=-0.005 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHhccCCchHHHHHHHHHhhhh---cCCCCChHHHH
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGVGL---MP--DEITFLGILSACCHGGLVDEGRKYFAQMSSI---FRLSPKLKHYS 453 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 453 (588)
.++..++...+.++++++.|+...+--- .| ....+..+...|.+..|+++|.-+..++.+. +++..-..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 3344555555566666666665443110 11 1124555555666666666666555444321 12222112222
Q ss_pred -----HHHHHHHhcCChHHHHHHHHhC-------CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc
Q 007818 454 -----CMVDLLGRSGLLEEAEQLIRSM-------PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLEL 510 (588)
Q Consensus 454 -----~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 510 (588)
.+.-+|...|....|.+.-++. ..+| .......+...|...|+.+.|..-|+.+...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 2333445555555555555443 1111 2334445555566666666666666555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.39 E-value=1.1 Score=38.12 Aligned_cols=162 Identities=15% Similarity=0.104 Sum_probs=76.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
+.+||-+.--+...|+++.|.+.|+...+....- ..+...-.-++.-.|++.-|.+=+...-+...-.|-...|.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y-~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc-hHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 3456666666667777777777777766643111 11221112233345666666655544443211112122222221
Q ss_pred HHHhcCChHHHHHHH-HhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHccC
Q 007818 458 LLGRSGLLEEAEQLI-RSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD-------SGIYVLLANMYRDSN 529 (588)
Q Consensus 458 ~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 529 (588)
.+.-++.+|..-+ ++.. ..|...|...+-.+.- |... .+..++++..-..++ ..+|..|+.-+...|
T Consensus 177 --E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred --HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 1233555555433 3332 2233333332222211 1110 111222222211111 346788888888899
Q ss_pred ChHHHHHHHHHHHhcCC
Q 007818 530 MWEEAGKVRKMMEERGV 546 (588)
Q Consensus 530 ~~~~A~~~~~~~~~~~~ 546 (588)
+.++|..+|+.....++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 99999988888776543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.36 E-value=4.1 Score=42.22 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=63.7
Q ss_pred HHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhH
Q 007818 154 GFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233 (588)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 233 (588)
.+.+.|++++|..-|-+-+.. +.|+ .++.-|........-..+++.+.+.|+. +...-..|+.+|.+.++.++
T Consensus 377 ~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 377 YLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence 344556666666555444321 1221 2344444444444555555555555555 33334556666666666666
Q ss_pred HHHHHHhcCCCCcc--hHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHH
Q 007818 234 AEEIFDSMVNKTVV--SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEM 303 (588)
Q Consensus 234 A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 303 (588)
-.++.+... .+.. -....+..+.+.+-.++|.-+-..... +. ..+--.+-..+++++|++.+..+
T Consensus 450 L~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he---~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-HE---WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CH---HHHHHHHHHhcCHHHHHHHHhcC
Confidence 655555544 2111 123334444444444444444333222 11 11112233445566666665543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.35 E-value=2.3 Score=39.23 Aligned_cols=99 Identities=9% Similarity=0.031 Sum_probs=49.3
Q ss_pred HHHHHHHHHcccCChhH---HHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCC---CcchHHHHHHH
Q 007818 314 TTVHCLSACSQLGALDD---GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER---NSLTYTAIIGG 387 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~ 387 (588)
++..++.++...+..+. |..+++.+.... .-.+.++..-+..+.+.++.+++.+++.+|... ....+..++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 45556666666655443 444444553332 223444444555666667777777777776632 22344444443
Q ss_pred HH--hcCChHHHHHHHHHHHHCCCCCCH
Q 007818 388 LA--LHGKALDAISYFSEMIGVGLMPDE 413 (588)
Q Consensus 388 ~~--~~~~~~~a~~~~~~~~~~~~~p~~ 413 (588)
+. .......|...+..+....+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 31 122334555555555444344443
|
It is also involved in sporulation []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.21 Score=47.84 Aligned_cols=66 Identities=11% Similarity=0.011 Sum_probs=58.3
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcc----cHHHHHHHHHccCChhhHHHHHHHHHHh
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF----TYPLLFKVCASLGLRFLGYEIFGHVLKL 108 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 108 (588)
+.+...|+.+..+|...|++++|+..|++.++ +.|+.. +|..+..+|...|+.++|...++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44667899999999999999999999999988 667754 4888999999999999999999999985
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.64 Score=40.88 Aligned_cols=160 Identities=12% Similarity=0.011 Sum_probs=80.9
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCCC-cccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 007818 48 VAIRGFLETGKMREAVDLYKQMLRNGGTRPD-NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126 (588)
Q Consensus 48 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (588)
.=+..-.+.|++++|.+.|+.+.......|= ..+.-.++.++-+.++.+.|...+++.++.-+.....-|...|.+++.
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~ 118 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSY 118 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Confidence 3344456677778888777777664332222 223444455566777777777777777776433222334444444432
Q ss_pred C-------CChhHHHHHhcc---CCC--CCc------c----------cH--HHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 007818 127 C-------GDLGLACNVFDE---SCV--RNL------V----------SW--NSLINGFVRSGFPREAIRLFRDMQLERV 176 (588)
Q Consensus 127 ~-------~~~~~A~~~~~~---~~~--~~~------~----------~~--~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 176 (588)
- .|...+...+.. ... ||. . +. -.+.+.|.+.|.+..|..-+++|.+. .
T Consensus 119 ~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y 197 (254)
T COG4105 119 FFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-Y 197 (254)
T ss_pred hccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-c
Confidence 1 223333333322 111 111 1 00 12344566777777777777777665 2
Q ss_pred CCCcc---hHHHHHHHHhccCChhHHHHHHHHHHH
Q 007818 177 EPDEV---TMIGMVSACAQLEDLNLGREIHWYISE 208 (588)
Q Consensus 177 ~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~ 208 (588)
+-+.. .+-.+..+|...|-.++|...-.-+..
T Consensus 198 ~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 198 PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 22222 233444556666666666555444433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.042 Score=31.90 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=22.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 517 IYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999965
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.25 Score=38.70 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHH
Q 007818 43 SFSWNVAIRGFLETGKMREAVDLYKQ 68 (588)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 68 (588)
..++..++-++++.|+.+....+.+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~ 27 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKS 27 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 34555666666666666666555544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.18 Score=44.49 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=78.3
Q ss_pred hHHhhcccCC--CCChhhHHHHHHHHHhC-----CChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccC---------
Q 007818 30 YCTKILFNVQ--NPNSFSWNVAIRGFLET-----GKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLG--------- 93 (588)
Q Consensus 30 ~a~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 93 (588)
..+..|...+ ..|-.+|-+.+..+... +..+-....++.|.+ .|+.-|..+|+.|+..+=+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 3445566666 66788888888877654 566777788889988 999999999999998764432
Q ss_pred -------ChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 007818 94 -------LRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD 129 (588)
Q Consensus 94 -------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (588)
+-+-+..++++|...|+-||..+-..|++++.+.+-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 335688999999999999999999999999988765
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=4.9 Score=41.89 Aligned_cols=18 Identities=6% Similarity=-0.082 Sum_probs=11.1
Q ss_pred HHhCCChhHHHHHHHHhH
Q 007818 155 FVRSGFPREAIRLFRDMQ 172 (588)
Q Consensus 155 ~~~~~~~~~a~~~~~~m~ 172 (588)
..+.|++..+.++...+.
T Consensus 43 a~~~g~~~~~~~~~~~l~ 60 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLK 60 (644)
T ss_pred HHHCCCHHHHHHHHHhcc
Confidence 455667777666666553
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.53 Score=44.01 Aligned_cols=154 Identities=10% Similarity=-0.046 Sum_probs=99.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhh----cCCCCCh
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEM----IGVGLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSI----FRLSPKL 449 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~ 449 (588)
..|..|...|.-.|+++.|+..-+.- .+-|-+. ....+..+..+++-.|+++.|.+.|+..... ..-....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666667777788999988765432 2223221 2346778888999999999999988875432 1112234
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC--CCCC----
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP--------MAADVVVWGALFFACRLHGNVSIGERAAMKLLELD--PQDS---- 515 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~---- 515 (588)
.+-.+|...|.-..++++|+.++.+-- ..-....+.++..++...|..++|+...++.++.. .+|+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgel 355 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGEL 355 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhh
Confidence 455678888888888999999887641 11345677888888888899999988887776532 2222
Q ss_pred chHHHHHHHHHccCChH
Q 007818 516 GIYVLLANMYRDSNMWE 532 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~ 532 (588)
....+|.+.-...|.-+
T Consensus 356 Tar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 356 TARDNLSDLILELGQED 372 (639)
T ss_pred hhhhhhHHHHHHhCCCc
Confidence 23344555444455433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.95 E-value=6.8 Score=42.48 Aligned_cols=118 Identities=17% Similarity=0.057 Sum_probs=68.5
Q ss_pred HHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch
Q 007818 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429 (588)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 429 (588)
+.-.++.-.+.|-+.+|+.++..-.+.-...|.+-..-+...+.+++|.-.|+..-+ ....+.+|..+|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 344444455566667776666544433344455555555566677777666654322 12245667777888
Q ss_pred HHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 007818 430 DEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478 (588)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 478 (588)
.+|..+..++.. +-..-..+-..|+.-+...+++-+|-++..+...+
T Consensus 982 r~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 982 REALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 888777776643 11111222356677777788888888777766443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.3 Score=36.98 Aligned_cols=89 Identities=19% Similarity=0.106 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCCH-hHHHHHHHHHHhhCCHHHHHHHHHHHhc----cCCCCCch
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP-------MAADV-VVWGALFFACRLHGNVSIGERAAMKLLE----LDPQDSGI 517 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~p~~~~~ 517 (588)
..+....+.|++...+.+|-..+.+-. .-|+. ..+...+-.+.-..|+..|+..++.--+ ..|++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 344555566667777777666555432 11221 2334444445566678888888777544 33556667
Q ss_pred HHHHHHHHHccCChHHHHHHHH
Q 007818 518 YVLLANMYRDSNMWEEAGKVRK 539 (588)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~ 539 (588)
...|+.+| ..|+.+++..+..
T Consensus 231 lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHHc
Confidence 77777655 4567776666543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.3 Score=42.86 Aligned_cols=151 Identities=13% Similarity=0.042 Sum_probs=87.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
.-+..++..-+++-++..+ +.|+-.+--.+ -+-.......++++++++..+. + ...+..- ......|.
T Consensus 178 AWRERnp~aRIkaA~eALe--i~pdCAdAYIL-LAEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~--- 245 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALE--INPDCADAYIL-LAEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH--- 245 (539)
T ss_pred HHhcCCHHHHHHHHHHHHH--hhhhhhHHHhh-cccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc---
Confidence 3445556666666666665 35554332222 1223345578888888887764 1 1111000 00001111
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 468 AEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ--DSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
..+.+.+-..+|-...-..+...+.+.|+.++|++.++++++..|. +-.+...|+.++...+.+.++..++.+--+..
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1111111112233334445666677889999999999999987775 45678889999999999999999998875544
Q ss_pred CccCC
Q 007818 546 VEKTP 550 (588)
Q Consensus 546 ~~~~~ 550 (588)
.+++.
T Consensus 326 lpkSA 330 (539)
T PF04184_consen 326 LPKSA 330 (539)
T ss_pred CCchH
Confidence 44443
|
The molecular function of this protein is uncertain. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.82 E-value=2.7 Score=37.29 Aligned_cols=218 Identities=17% Similarity=0.079 Sum_probs=139.9
Q ss_pred ChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHcccCChhHHHHHHHHHHHh-CCCCcchHHHHHHHHhHhcCChhHHHHH
Q 007818 292 RSKEALALFHEMQATGIK-PDAVTTVHCLSACSQLGALDDGIWIHRFIEKE-NFNLNVVLGTALVDMYAKCGNIAKALQV 369 (588)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 369 (588)
....+...+......... .....+......+...+....+...+...... ........+......+...+++..+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444443211 12345555555566666666666666555442 2233344455556666666777777777
Q ss_pred hccCCC--CCc-chHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhccCCchHHHHHHHHHhhh
Q 007818 370 FHEMPE--RNS-LTYTAIIG-GLALHGKALDAISYFSEMIGVGLMP----DEITFLGILSACCHGGLVDEGRKYFAQMSS 441 (588)
Q Consensus 370 ~~~~~~--~~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 441 (588)
+..... ++. ........ .+...|+++.|...+.+.... .| ....+......+...++.+.+...+.....
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALEL--DPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 776654 221 22333333 678889999999999988652 33 233444444446678899999999999987
Q ss_pred hcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 442 IFRLSP-KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 442 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
. .+. ....+..+...+...++++.|...+.... ..|+ ...+......+...+..+.+...+.+..+..|.
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 3 333 46778888888999999999999988773 3344 445555555555777899999999999999986
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.81 E-value=3.3 Score=40.30 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=11.8
Q ss_pred HHHHHHHHHhccCCCC
Q 007818 499 IGERAAMKLLELDPQD 514 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~ 514 (588)
.|.+.+.++++.+|.-
T Consensus 364 ~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 4667888888877754
|
The molecular function of this protein is uncertain. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.063 Score=32.93 Aligned_cols=32 Identities=19% Similarity=0.201 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
|.++..++.+|.+.|++++|.++++++.+...
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45788999999999999999999999988653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.8 Score=45.70 Aligned_cols=157 Identities=13% Similarity=0.013 Sum_probs=86.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCCCc-----ccHHHHHHHHHc----cCChhhHHHHHHHHHHhcCCCChhHHH
Q 007818 48 VAIRGFLETGKMREAVDLYKQMLRNGGTRPDN-----FTYPLLFKVCAS----LGLRFLGYEIFGHVLKLGFDVDMYVHN 118 (588)
Q Consensus 48 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (588)
.++....-.||-+.+++.+....+..++.... ..|+.++..++- ..+.+.|.++++.+.++- |+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHHHH
Confidence 44555566677777777777765533333221 123333333332 346677777777777643 5554444
Q ss_pred HHH-HHHHhCCChhHHHHHhccCCC-------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 007818 119 AVI-HVFVSCGDLGLACNVFDESCV-------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSAC 190 (588)
Q Consensus 119 ~l~-~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 190 (588)
..- +.+...|++++|++.|++... -....+-.+...+.-.++|++|.+.|..+.+.+ ..+..+|.-+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 333 445557778888877775321 122334445556666777777777777776643 33444454444333
Q ss_pred -hccCCh-------hHHHHHHHHHH
Q 007818 191 -AQLEDL-------NLGREIHWYIS 207 (588)
Q Consensus 191 -~~~~~~-------~~a~~~~~~~~ 207 (588)
...++. ++|.+++.++.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 344555 55555555443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.6 Score=33.90 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCC
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (588)
...-+..+..+|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-++ |+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3445666777788888888888777643 777777788888888888888888888887775 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.9 Score=34.74 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=20.4
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 007818 84 LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126 (588)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (588)
.++..+...+.......+++.+...+ +.+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444445555555555555443 2344455555555544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=4.1 Score=37.48 Aligned_cols=25 Identities=16% Similarity=-0.137 Sum_probs=11.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
.+.++...|+- +|...+.++.+..|
T Consensus 241 a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 241 IIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 33444444442 45555555555444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.36 E-value=6.1 Score=39.37 Aligned_cols=415 Identities=11% Similarity=0.084 Sum_probs=213.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcc-cHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHH
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNF-TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (588)
+-..|..+|.---.....+.+..++..++. -.|-.. .|......=.+.|..+.+.++|++-++ |++.+...|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~---kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLS---KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHh---hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 344566666655555555667777777765 234433 233333333477888999999999887 677777777777
Q ss_pred HHHHHh-CCChhHHHHHhccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHh--
Q 007818 121 IHVFVS-CGDLGLACNVFDESCV------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACA-- 191 (588)
Q Consensus 121 ~~~~~~-~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-- 191 (588)
+..+.. .|+.+.....|+.... .+...|...|.--..++++.....++++..+. |. ..|+.....|.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHHHH
Confidence 765544 5677777777766321 24556777777777788888888888888752 22 12222221111
Q ss_pred -ccC------ChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCC-hhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHH
Q 007818 192 -QLE------DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGK-LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLD 263 (588)
Q Consensus 192 -~~~------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 263 (588)
... ..+++.++-...... ......+. .+.-....+..-.+.. ..+
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~s~--------------~l~ 248 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDPSK--------------SLT 248 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCccc--------------hhh
Confidence 111 111111111000000 00000000 0000000111100000 000
Q ss_pred HHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCC
Q 007818 264 IARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENF 343 (588)
Q Consensus 264 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 343 (588)
++...+.+. ...--..+............++.-... |- ....- -.
T Consensus 249 ~~~~~l~~~-------~~~~~~~~~~s~~~~~kr~~fE~~Ikr---pY-----------fhvkp--------------l~ 293 (577)
T KOG1258|consen 249 EEKTILKRI-------VSIHEKVYQKSEEEEEKRWGFEEGIKR---PY-----------FHVKP--------------LD 293 (577)
T ss_pred HHHHHHHHH-------HHHHHHHHHhhHhHHHHHHhhhhhccc---cc-----------cccCc--------------cc
Confidence 000000000 000000111111111111122221111 00 00000 01
Q ss_pred CCcchHHHHHHHHhHhcCChhHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN---SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
.++...|...+..-...|+.+.+.-.|+...-|. ...|-..+.-....|+.+-|..++....+-.++-.+.+-..-.
T Consensus 294 ~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 294 QAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 1234456666666677788888887777766542 2345555555555588888887777665543332322222222
Q ss_pred HHhccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHH---HHHHhCC-CCCC----HhHHHHHHHH-
Q 007818 421 SACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAE---QLIRSMP-MAAD----VVVWGALFFA- 490 (588)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~----~~~~~~l~~~- 490 (588)
.-+-..|+++.|..+++.+... . |+ ...-..-+....+.|+.+.+. +++.... .+-+ ...+....+-
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 2344578999999999999885 3 55 333333455667888888887 5554432 1212 1122222222
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
+...++.+.|..++.++.+..|++...|..+.......+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 456789999999999999999999999998888877665
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.39 Score=42.42 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=71.3
Q ss_pred CcccHHHHHHHHH-----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccC----------------ChhHHHHH
Q 007818 276 YVVPWNAIIGGYV-----QAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG----------------ALDDGIWI 334 (588)
Q Consensus 276 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----------------~~~~a~~~ 334 (588)
+..+|.+.+..|. +.+.++-....++.|.+.|+.-|..+|..|++.+-+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 3344444444443 23566777777888999999999999999998875432 33457899
Q ss_pred HHHHHHhCCCCcchHHHHHHHHhHhcCChh-HHHHHhccCC
Q 007818 335 HRFIEKENFNLNVVLGTALVDMYAKCGNIA-KALQVFHEMP 374 (588)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~A~~~~~~~~ 374 (588)
+++|...|+-||..+-..|++++.+.+-.- +..++.--|+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 999999999999999999999998877543 3344433333
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.15 E-value=3.6 Score=35.90 Aligned_cols=202 Identities=14% Similarity=0.106 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (588)
|.....+|...+++++|...+.+..+. ...+...| ...+.++.|..+.+++.+.. --...++--...|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamLake~~kls--Evvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAMLAKELSKLS--EVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 333444555566666666555554421 11111111 11223344444444444331 123345556667777
Q ss_pred cCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHhccCCchHHHHH
Q 007818 360 CGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL--MPDE---ITFLGILSACCHGGLVDEGRK 434 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~~~~~~a~~ 434 (588)
+|.++-|-..+++.-+ .....++++|+++|++...--. ..+. ..+..+...+.+...+++|-.
T Consensus 104 ~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred hCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 7777766655554321 2334567777777776543200 1111 234555566667777777665
Q ss_pred HHHHhhhh---cCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhC---C--CC-CCHhHHHHHHHHHHhhCCHHHHHHHH
Q 007818 435 YFAQMSSI---FRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSM---P--MA-ADVVVWGALFFACRLHGNVSIGERAA 504 (588)
Q Consensus 435 ~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~--~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 504 (588)
.+.+-... ..--++ -..|-..|-.|.-..++..|...++.- + .. .+..+...|+.+| ..||.+++..++
T Consensus 172 a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 172 AFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 55443211 011122 234555566666677888899888873 2 12 3567788888777 567777766654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.089 Score=29.90 Aligned_cols=30 Identities=20% Similarity=0.144 Sum_probs=26.0
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.++..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999998754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.4 Score=40.63 Aligned_cols=218 Identities=12% Similarity=0.057 Sum_probs=113.5
Q ss_pred hcCCHHHHHHHhhhCCCC------CcccHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHcccC
Q 007818 258 KFGFLDIARKIFDDLPEK------YVVPWNAIIGGYVQAKRSKEALALFHEMQAT--GIKPDA---VTTVHCLSACSQLG 326 (588)
Q Consensus 258 ~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~---~~~~~l~~~~~~~~ 326 (588)
...+.++++..+...... ...++..+..+.+..|.+++++..--.-+.. ...-.. ..|..+.+++.+.-
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554433221 1223555666666677666655432211110 011111 12333333333333
Q ss_pred ChhHHHHHHHHHHHh-CCCC---cchHHHHHHHHhHhcCChhHHHHHhccCCC-------C--CcchHHHHHHHHHhcCC
Q 007818 327 ALDDGIWIHRFIEKE-NFNL---NVVLGTALVDMYAKCGNIAKALQVFHEMPE-------R--NSLTYTAIIGGLALHGK 393 (588)
Q Consensus 327 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~ 393 (588)
++.+++.+-+.-... |..| .......+..++...+.++++++.|+...+ + ...++-.|.+.|.+..+
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 444444433322221 2222 123334566677777778888887776542 1 23467788888888888
Q ss_pred hHHHHHHHHHHHH----CCCCCCHHHH-----HHHHHHhccCCchHHHHHHHHHhhhhc---CCCCC-hHHHHHHHHHHH
Q 007818 394 ALDAISYFSEMIG----VGLMPDEITF-----LGILSACCHGGLVDEGRKYFAQMSSIF---RLSPK-LKHYSCMVDLLG 460 (588)
Q Consensus 394 ~~~a~~~~~~~~~----~~~~p~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~ 460 (588)
+++|+-+.....+ .++.--...| ..+.-++-..|....|.+..++..+.. |-.+. ......+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 8888877665433 2222111222 233445666777777777777765431 22221 344557788888
Q ss_pred hcCChHHHHHHHHhC
Q 007818 461 RSGLLEEAEQLIRSM 475 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~ 475 (588)
..|+.+.|..-|+.+
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 888888887777653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.87 E-value=12 Score=40.80 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHH
Q 007818 219 NALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALA 298 (588)
Q Consensus 219 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 298 (588)
...+..-.+.|-++.|+.++.-=.+.-...|.+...-+.....+++|.-.|+..-+ ....+.+|...|+|.+|+.
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~ 986 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALS 986 (1265)
T ss_pred HHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHH
Confidence 33334444455555555444332222223333334444444444444444443322 1223445556677777777
Q ss_pred HHHHHHHCCCCCCHHH--HHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC
Q 007818 299 LFHEMQATGIKPDAVT--TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 299 ~~~~~~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 374 (588)
+..++... -|... -..|...+...++.-+|-++..+.... ....+..+++...+++|.++-....
T Consensus 987 ~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 987 LAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 76655321 12111 134445555555555555554443322 1233444555556666666554443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.14 Score=29.15 Aligned_cols=29 Identities=24% Similarity=0.130 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
|..+...+...|++++|...++++++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444445555555555555555555554
|
... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.52 E-value=1.5 Score=35.88 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=6.6
Q ss_pred CChhHHHHHHHhcCCC
Q 007818 229 GKLESAEEIFDSMVNK 244 (588)
Q Consensus 229 g~~~~A~~~~~~~~~~ 244 (588)
+..++|+.-|..+.+.
T Consensus 72 ~k~d~Alaaf~~lekt 87 (221)
T COG4649 72 NKTDDALAAFTDLEKT 87 (221)
T ss_pred CCchHHHHHHHHHHhc
Confidence 3344444444444333
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.13 Score=29.30 Aligned_cols=30 Identities=27% Similarity=0.179 Sum_probs=26.2
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.+|..++.+|...|++++|++.++++.+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 478899999999999999999999998754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.28 E-value=4.1 Score=33.70 Aligned_cols=35 Identities=3% Similarity=0.021 Sum_probs=21.3
Q ss_pred HHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHH
Q 007818 165 IRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199 (588)
Q Consensus 165 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 199 (588)
++.++.+.+.+++|+...+..++..+.+.|.....
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L 48 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL 48 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34444555566677766777777777766665433
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.4 Score=42.16 Aligned_cols=97 Identities=12% Similarity=0.059 Sum_probs=53.8
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHH
Q 007818 457 DLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (588)
......|+++.+...+.... ......+...+++.....|+++.|.....-++.-+-.++.+....+..-...|-++++
T Consensus 331 ~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 331 VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 33445566666666655542 2233445555555555666666666666666655555555554444444555666666
Q ss_pred HHHHHHHHhcCCccCCcee
Q 007818 535 GKVRKMMEERGVEKTPGCS 553 (588)
Q Consensus 535 ~~~~~~~~~~~~~~~~~~~ 553 (588)
.-.|+++...+.+.+.|+.
T Consensus 411 ~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 411 YHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred HHHHHHHhccCChhcccce
Confidence 6666666655544444433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.49 Score=42.66 Aligned_cols=57 Identities=23% Similarity=0.212 Sum_probs=29.4
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
.++..+...|+++.+...++++++.+|-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 334444444555555555555555555555555555555555555555555555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.19 E-value=3.9 Score=39.34 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=57.0
Q ss_pred CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC----CCCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 479 ADVVVWGALFFACRLHGNVSIGERAAMKLLELDP----QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
....+|..++..+.+.|.++.|...+.++....+ ..|.+...-+..+...|+.++|...++.......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3566888999999999999999999999988662 2567788889999999999999999999887333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.16 Score=29.41 Aligned_cols=27 Identities=15% Similarity=0.003 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
++..+...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677778888888888888888554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.4 Score=35.85 Aligned_cols=90 Identities=19% Similarity=0.112 Sum_probs=54.2
Q ss_pred HHHhccCCchHHHHHHHHHhhhhcCCCCChHH-HHHHHHHHHhcCChHHHHHHHHhCCCC-CCHhHHHHHHHHHHhhCCH
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH-YSCMVDLLGRSGLLEEAEQLIRSMPMA-ADVVVWGALFFACRLHGNV 497 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 497 (588)
+..-.+.++.+.+..++..+.-. .|.... -..-...+.+.|++.+|..+|+++... |....-..++..|....+-
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvL---RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVL---RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHh---CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 33445778899999998888753 454322 223345567889999999999998644 4444445555555544332
Q ss_pred HHHHHHHHHHhccCC
Q 007818 498 SIGERAAMKLLELDP 512 (588)
Q Consensus 498 ~~A~~~~~~~~~~~p 512 (588)
..=.....++++..|
T Consensus 94 ~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 94 PSWRRYADEVLESGA 108 (160)
T ss_pred hHHHHHHHHHHhcCC
Confidence 323333444555554
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.19 Score=26.56 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=20.0
Q ss_pred chHHHHHHHHHccCChHHHHHHHH
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRK 539 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~ 539 (588)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788889999999999988876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.45 E-value=13 Score=37.26 Aligned_cols=125 Identities=10% Similarity=0.085 Sum_probs=80.3
Q ss_pred CCChhhHHhhcccCC--CCChh-hHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH-ccCChhhHHH
Q 007818 25 SKNLDYCTKILFNVQ--NPNSF-SWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA-SLGLRFLGYE 100 (588)
Q Consensus 25 ~g~~~~a~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~ 100 (588)
...++.++.+++.+- -|... -|......-.+.|..+.+.++|++..+ +++.+...|...+.-+. ..|+.+....
T Consensus 58 ~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~--aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 58 IEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ--AIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred hhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 334455555555543 34433 244555555678899999999999887 46555555555544333 6678888888
Q ss_pred HHHHHHHh-cCC-CChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHH
Q 007818 101 IFGHVLKL-GFD-VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSL 151 (588)
Q Consensus 101 ~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 151 (588)
.|+.++.. |.. .+...|...|..-..++++.....+++++.+-....++..
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~ 188 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRH 188 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHH
Confidence 88888875 321 2345677777777778889999999888655434444433
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.43 E-value=7.7 Score=34.92 Aligned_cols=60 Identities=17% Similarity=-0.028 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
.+......|...|.+.+|.++.++++.++|-+...+-.|...|...|+-=+|.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345556678899999999999999999999999999999999999999888888888774
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.018 Score=46.88 Aligned_cols=83 Identities=22% Similarity=0.206 Sum_probs=54.0
Q ss_pred HHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHH
Q 007818 318 CLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDA 397 (588)
Q Consensus 318 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 397 (588)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3555666677777777777777666556677788888888888777888877773332 3334556666666666666
Q ss_pred HHHHHH
Q 007818 398 ISYFSE 403 (588)
Q Consensus 398 ~~~~~~ 403 (588)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.23 E-value=5.2 Score=32.23 Aligned_cols=43 Identities=9% Similarity=0.141 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 007818 149 NSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192 (588)
Q Consensus 149 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 192 (588)
..++..+...+.+......++.+...+ ..+...++.++..+++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 344444544455555555555554443 2333444444444443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.18 E-value=31 Score=40.99 Aligned_cols=309 Identities=11% Similarity=0.011 Sum_probs=170.8
Q ss_pred HHHHHHHhcCChhHHHHHHHhc----CCCC--cchHHHHHHHHHhcCCHHHHHHHhhh-CCCCCcccHHHHHHHHHhcCC
Q 007818 220 ALMDMYVKCGKLESAEEIFDSM----VNKT--VVSCTTMIVGYAKFGFLDIARKIFDD-LPEKYVVPWNAIIGGYVQAKR 292 (588)
Q Consensus 220 ~l~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 292 (588)
.+..+-.+++.+.+|...++.- .+.+ ...+..+...|...+++|...-+... ...++ ...-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4556677788888888888873 1111 12233344477777777776666553 22221 3334445667889
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchH-HHHHHHHhHhcCChhHHHHHhc
Q 007818 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL-GTALVDMYAKCGNIAKALQVFH 371 (588)
Q Consensus 293 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~ 371 (588)
+..|...|+.+.+.+ ++...++..++......+.++......+-....- .+.... ++.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999998864 3336677777777777777777666544333221 112222 2222334456777777766655
Q ss_pred cCCCCCcchHHHH--HHHHHhcC--ChHHHHHHHHHHHHCCCCCC-------H--HHHHHHHHHhccCCchHHHHHHHHH
Q 007818 372 EMPERNSLTYTAI--IGGLALHG--KALDAISYFSEMIGVGLMPD-------E--ITFLGILSACCHGGLVDEGRKYFAQ 438 (588)
Q Consensus 372 ~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~~~~p~-------~--~~~~~l~~~~~~~~~~~~a~~~~~~ 438 (588)
..+..+|.+. .....+.. +.-.-...++.+++.-+.|- . ..|..++..+.-.. .+...+
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~---- 1614 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIE---- 1614 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHH----
Confidence 4455556554 23322222 22222233333333211110 0 12333322221110 011111
Q ss_pred hhhhcCCCCCh------HHHHHHHHHHHhcCChHHHHHHH---HhC----CCCC-----CHhHHHHHHHHHHhhCCHHHH
Q 007818 439 MSSIFRLSPKL------KHYSCMVDLLGRSGLLEEAEQLI---RSM----PMAA-----DVVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 439 ~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~---~~~----~~~~-----~~~~~~~l~~~~~~~~~~~~A 500 (588)
...++.++. ..|..-+. +.+....+.+-+ ++. ..+| -...|......++..|.++.|
T Consensus 1615 --~l~~~s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1615 --ELKKVSYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred --HhhccCccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 111222321 12221111 222222222222 111 1122 356899999999999999999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
-..+-++.+..+ |.++.-.+..+...|+...|+.+++...+...+.
T Consensus 1690 ~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1690 QNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred HHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 999999988885 6788889999999999999999999998766544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.38 Score=43.71 Aligned_cols=96 Identities=11% Similarity=0.056 Sum_probs=69.3
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHhHHHHHHHHHHhhCC
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MA-ADVVVWGALFFACRLHGN 496 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~ 496 (588)
-..-|.++|.+++|+..|...... .+-++..+..-..+|.+...+..|+.-.+.+. .. .-...|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 456788999999999999988753 23377777788888999998888776665542 11 123344444555556788
Q ss_pred HHHHHHHHHHHhccCCCCCc
Q 007818 497 VSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~ 516 (588)
..+|.+-++.++++.|++..
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH
Confidence 88999999999999997543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.00 E-value=5.8 Score=33.42 Aligned_cols=24 Identities=13% Similarity=-0.014 Sum_probs=11.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHhc
Q 007818 521 LANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
-++++...|+.++|+.-|+...+.
T Consensus 165 rGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 165 RGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred hhhHHHHcCchHHHHHHHHHHHHc
Confidence 344444445555555444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.92 E-value=1.3 Score=36.11 Aligned_cols=83 Identities=17% Similarity=0.097 Sum_probs=60.6
Q ss_pred HHHHHHHHHH---HhcCChHHHHHHHHhCC-CCCCHhHHHHHH-HHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 450 KHYSCMVDLL---GRSGLLEEAEQLIRSMP-MAADVVVWGALF-FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 450 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~-~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
.+...|+..+ .+.++.+++..++..+. .+|.......+- ..+...|++.+|+++++.+.+..|..+..--.++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3445555543 47788999999998884 566544443332 236688999999999999988888888888888888
Q ss_pred HHccCChH
Q 007818 525 YRDSNMWE 532 (588)
Q Consensus 525 ~~~~g~~~ 532 (588)
+...|+.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 88888763
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=1 Score=40.72 Aligned_cols=62 Identities=19% Similarity=0.085 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...+-.++.+.++++.|.++.+.++.+.|++|.-+.-.+-+|.+.|.+..|..-++...+.-
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 45566678899999999999999999999999999999999999999999999999987653
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.61 E-value=1.3 Score=35.36 Aligned_cols=83 Identities=16% Similarity=0.106 Sum_probs=57.0
Q ss_pred HHHHHHHHHH---HhcCChHHHHHHHHhCC-CCCCHhHHHHH-HHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 450 KHYSCMVDLL---GRSGLLEEAEQLIRSMP-MAADVVVWGAL-FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 450 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
.+.+.|++.. ...++++++..+++.+. ..|+..-...+ ...+...|++.+|.++++.+.+..|..|..--.++.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 3444454443 35788888888888874 45543333222 2235688899999999999988888777777778888
Q ss_pred HHccCChH
Q 007818 525 YRDSNMWE 532 (588)
Q Consensus 525 ~~~~g~~~ 532 (588)
+.-.|+.+
T Consensus 88 L~al~Dp~ 95 (153)
T TIGR02561 88 LNAKGDAE 95 (153)
T ss_pred HHhcCChH
Confidence 88888753
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.39 E-value=1.7 Score=34.74 Aligned_cols=109 Identities=14% Similarity=0.082 Sum_probs=67.3
Q ss_pred HHHHHHHH---HhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHhHHHHHHH
Q 007818 414 ITFLGILS---ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVWGALFF 489 (588)
Q Consensus 414 ~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~ 489 (588)
...+.++. .-...++.+++..++..+.-...-.+...++ -...+...|++.+|..+|+++...+ ....-..++.
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence 34444444 3446889999999999998542222223333 3445789999999999999997554 3333333333
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
.|....+ +| .|...+......|.-.++..+.+.+.
T Consensus 86 ~CL~al~--------------Dp----~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 86 LCLNAKG--------------DA----EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHhcC--------------Ch----HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 3433211 12 46666666666667777777777776
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.46 Score=26.54 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=14.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 518 YVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
+..++.++.+.|++++|.++|+++.+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555555555555555544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.20 E-value=8.3 Score=32.54 Aligned_cols=114 Identities=11% Similarity=-0.000 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHH-----HHHHHHHhcCChHHH
Q 007818 396 DAISYFSEMIGVGLMPDEITFL--GILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS-----CMVDLLGRSGLLEEA 468 (588)
Q Consensus 396 ~a~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A 468 (588)
+.....+.+....-....-++. .+...+...|++++|..-++..... |....+. .|.+.....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455555665542121112222 3355677889999999998887753 2222222 456677889999999
Q ss_pred HHHHHhCCCC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 469 EQLIRSMPMA-ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 469 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
+..++....+ -.......-...+...|+-++|...|+++++..+.
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 9999887532 12223344455688899999999999999988753
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.9 Score=36.54 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=57.5
Q ss_pred HHhcCChHHHHHHHHhCCCCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC----CCchHHHHHHHHHccCChH
Q 007818 459 LGRSGLLEEAEQLIRSMPMAA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ----DSGIYVLLANMYRDSNMWE 532 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 532 (588)
+.+.|+ ++|++.|-.+...| +.......+..|....|.+++++++-+++++.+. ||.++..|+.++.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 445565 67888887775444 3444555555666678999999999999987643 6889999999999999999
Q ss_pred HHH
Q 007818 533 EAG 535 (588)
Q Consensus 533 ~A~ 535 (588)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.12 E-value=2.6 Score=35.55 Aligned_cols=95 Identities=15% Similarity=0.122 Sum_probs=58.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCCh------HH
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI--TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL------KH 451 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~ 451 (588)
.+..+..-|++.|+.+.|++.|.++.+....|... .+..++......+++..+.....++........+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45566777777777777888777777765444443 45666777777778887777777765531111111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSMP 476 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (588)
|..+ .+...+++.+|-+.|-...
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2222 2345678888888876663
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.06 E-value=0.49 Score=26.76 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=26.1
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
.+|..++.+|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999998764
|
... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.02 E-value=8 Score=32.03 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCC--ChhHHHHHhccCC
Q 007818 64 DLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG--DLGLACNVFDESC 141 (588)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~ 141 (588)
+....+.+ .+++|+...+..++..+.+.|++.. +..+++.++-+|.......+-.+.... -..-|..++.++.
T Consensus 15 EYirSl~~-~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 15 EYIRSLNQ-HNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 33444444 5666776677777777777666443 344445554444443333222221111 0223333333332
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 007818 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208 (588)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 208 (588)
..+..+++.+...|++-+|+++.+..... +......++.+..+.+|...--.+++-..+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24455666666777777777766554221 112223445555555554444444444333
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.33 Score=27.17 Aligned_cols=31 Identities=13% Similarity=0.006 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
+..+..++.+.|++++|...++++++..|++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 4456777888999999999999999999963
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.86 E-value=22 Score=36.71 Aligned_cols=247 Identities=10% Similarity=0.009 Sum_probs=120.6
Q ss_pred hcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHcccC-----ChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 007818 289 QAKRSKEALALFHEMQA-------TGIKPDAVTTVHCLSACSQLG-----ALDDGIWIHRFIEKENFNLNVVLGTALVDM 356 (588)
Q Consensus 289 ~~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (588)
...+.+.|+..|+.+.+ .|.+ .....+..+|.+.. +...|..++....+.|. |+....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 44556666666666655 3311 12333334443322 44556666666665552 222222222211
Q ss_pred hHh-cCChhHHHHHhccCCCC-CcchHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchH
Q 007818 357 YAK-CGNIAKALQVFHEMPER-NSLTYTAIIGGLA----LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430 (588)
Q Consensus 357 ~~~-~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 430 (588)
... ..+...|.++|....+. ....+-.+...|. ...+...|..++.+..+.| .|....-...+..+.. ++++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 111 13456666666665532 2333333333222 2345677777777777766 4433322333333333 5555
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHHHHHHH---Hh----cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHH
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLL---GR----SGLLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSI 499 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~ 499 (588)
.+.-.+..+... +.......-..+.... .. ..+...+...+.+...+-+......+...|.. ..+++.
T Consensus 415 ~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 415 TALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHH
Confidence 555554444443 3222111111111111 00 12445556666655444445555555544432 236778
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHcc-C--ChHHHHHHHHHHHhcC
Q 007818 500 GERAAMKLLELDPQDSGIYVLLANMYRDS-N--MWEEAGKVRKMMEERG 545 (588)
Q Consensus 500 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~ 545 (588)
|...+.++.+.. +....+++..+... | .+..|.++++...+.+
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 888888887766 66777777777642 2 2577888887776543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.86 E-value=0.47 Score=28.37 Aligned_cols=28 Identities=32% Similarity=0.292 Sum_probs=23.6
Q ss_pred chHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 516 GIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+++.|+.+|...|++++|.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998865
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.77 E-value=11 Score=32.95 Aligned_cols=23 Identities=4% Similarity=-0.156 Sum_probs=13.8
Q ss_pred HhhCCHHHHHHHHHHHhccCCCC
Q 007818 492 RLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
...+++.+|+.+|++......+|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 44566667777776665544433
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.76 E-value=18 Score=35.57 Aligned_cols=175 Identities=14% Similarity=0.102 Sum_probs=108.3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHH
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (588)
|-...-+++..+..+..+.-...+-.+|.. +..+...|..++++|... ..++-..+++++.+..+ .|+..-..|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~---~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLE---YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 445566777888887777777778888877 445667788888888877 55777888888888664 3333334444
Q ss_pred HHHHhCCChhHHHHHhccC-----CCC-Cc---ccHHHHHHHHHhCCChhHHHHHHHHhHHC-CCCCCcchHHHHHHHHh
Q 007818 122 HVFVSCGDLGLACNVFDES-----CVR-NL---VSWNSLINGFVRSGFPREAIRLFRDMQLE-RVEPDEVTMIGMVSACA 191 (588)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~~-----~~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~ 191 (588)
..|- .++...+...|.+. ++. +. ..|..+.... ..+.+..+.+....... |..--...+-.+-..|.
T Consensus 140 ~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444 47777777777652 111 11 1344443321 34566666666666433 33334445555666777
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHH
Q 007818 192 QLEDLNLGREIHWYISESGLTLTVPLANALMDMY 225 (588)
Q Consensus 192 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 225 (588)
...++.+|.+++..+.+..-+ |......++..+
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 778888888888877776433 444444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.46 E-value=2.9 Score=37.91 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhh----hcCCCCChHHHHHHHH
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS----IFRLSPKLKHYSCMVD 457 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~ 457 (588)
..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+...+..
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 334444444455555555555555442 33444555555555555555555555554433 1255555554444443
Q ss_pred H
Q 007818 458 L 458 (588)
Q Consensus 458 ~ 458 (588)
.
T Consensus 236 ~ 236 (280)
T COG3629 236 I 236 (280)
T ss_pred H
Confidence 3
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.61 Score=38.48 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=35.0
Q ss_pred CCCC-HhHHHHHHHHHHhhC-----------CHHHHHHHHHHHhccCCCCCchHHHHHHHHHc-cCChHHHHHHHHHHHh
Q 007818 477 MAAD-VVVWGALFFACRLHG-----------NVSIGERAAMKLLELDPQDSGIYVLLANMYRD-SNMWEEAGKVRKMMEE 543 (588)
Q Consensus 477 ~~~~-~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~ 543 (588)
++|+ ..++..+..++..++ -+++|...|+++...+|+| ..|.+ .....+|-++..++.+
T Consensus 64 I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~n--------e~Y~ksLe~~~kap~lh~e~~~ 135 (186)
T PF06552_consen 64 INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNN--------ELYRKSLEMAAKAPELHMEIHK 135 (186)
T ss_dssp H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHHHHTHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHhhHHHHHHHHH
Confidence 4554 345666666654332 2456666777777788865 24432 3556677777777766
Q ss_pred cCCcc
Q 007818 544 RGVEK 548 (588)
Q Consensus 544 ~~~~~ 548 (588)
.+...
T Consensus 136 ~~~~~ 140 (186)
T PF06552_consen 136 QGLGQ 140 (186)
T ss_dssp SSS--
T ss_pred HHhhh
Confidence 65443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=90.23 E-value=18 Score=34.75 Aligned_cols=179 Identities=17% Similarity=0.161 Sum_probs=113.7
Q ss_pred cCChhHHHHHhccCCC----CCcchHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhccCCchH
Q 007818 360 CGNIAKALQVFHEMPE----RNSLTYTAIIGG-LALHGKALDAISYFSEMIGVGLMPDEI----TFLGILSACCHGGLVD 430 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~ 430 (588)
.|+..+|.+.+..+.. +....|-.|+.+ .....++..|+++|++.+-. .|... ....-+-.....|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888888763 244456666665 44567889999999987663 45433 3444455667889999
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHH-HHHHHHhcC---ChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHH
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSC-MVDLLGRSG---LLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 506 (588)
++..+-......+...|-..-|.. +...+.+.+ ..+.-..++..|.-.-....|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888887777776555555443332 333333333 3455556666664333456788888888889999999999999
Q ss_pred HhccCCCCCchHHHHHHHH-----HccCChHHHHHHHHHH
Q 007818 507 LLELDPQDSGIYVLLANMY-----RDSNMWEEAGKVRKMM 541 (588)
Q Consensus 507 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~ 541 (588)
+..+... ...-...+..| .-..++++|.+.++.+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9887643 22222222222 2345566666555544
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.19 E-value=20 Score=35.24 Aligned_cols=190 Identities=10% Similarity=0.069 Sum_probs=106.9
Q ss_pred cchHHHHHHHHhHhcCChhHHHHHhccCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
|.....+++..+...-+.+-++.+-.++.. .+-..|..++..|... ..++-..+|+++.+.. -.|.+.-..+...|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHHHH
Confidence 444455666666666666666666666552 4555666777777766 4566677777776643 12223333333333
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCC------hHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHhHHHHHHHHHHh
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPK------LKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAADVVVWGALFFACRL 493 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~ 493 (588)
.+ ++...+..+|.++... +-|. ...|..+.... ..+.+....+...+. ...-...+..+..-|..
T Consensus 143 Ek-ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 33 6666777777776653 2221 12333333211 234455555554442 11223344455555666
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc--------------------cCChHHHHHHHHHHH
Q 007818 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD--------------------SNMWEEAGKVRKMME 542 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~~~ 542 (588)
..++.+|++++..+++.+..|..+...++.-+.. -.++-++..-|+...
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 7788888888888888777776666666655544 345666666666664
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.18 E-value=2 Score=38.91 Aligned_cols=51 Identities=18% Similarity=0.146 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhc
Q 007818 58 KMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109 (588)
Q Consensus 58 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 109 (588)
+++.++.++..=.+ .|+-||..+++.++..+.+.+++..|.++...|....
T Consensus 115 ~pq~~i~~l~npIq-YGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQ-YGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ChHHHHHHHhCcch-hccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 55566666666555 6666666666666666666666666666666665544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.11 E-value=12 Score=32.60 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=12.3
Q ss_pred CCHHHHHHHHHHHhccCCC
Q 007818 495 GNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~ 513 (588)
.|.-.+...+++..+++|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 5555666666666666665
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.58 Score=28.51 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=22.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 519 VLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
..|+.+|...|+.+.|+++++++...|-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 3578888888888888888888876543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.02 E-value=14 Score=34.25 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc--c----CChhhHHHHHHHHHHhcCC---CChhHHHHHHH
Q 007818 59 MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS--L----GLRFLGYEIFGHVLKLGFD---VDMYVHNAVIH 122 (588)
Q Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~ 122 (588)
+++.+++++.+.+ .|++-+..+|.+..-.... . ....++..+++.|++..+- ++-.++..++.
T Consensus 78 ~~~~~~~y~~L~~-~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA 149 (297)
T PF13170_consen 78 FKEVLDIYEKLKE-AGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA 149 (297)
T ss_pred HHHHHHHHHHHHH-hccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh
Confidence 3455678888888 7787777666543332222 1 2356788899999987632 33344444443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=90.01 E-value=0.94 Score=33.05 Aligned_cols=45 Identities=22% Similarity=0.133 Sum_probs=28.8
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...+++.++.+|+|......++..+...|++++|++.+-.+.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345566666777777777777777777777777777776666554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.97 E-value=2.8 Score=35.39 Aligned_cols=64 Identities=9% Similarity=0.106 Sum_probs=43.9
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCc--chHHHHHHHHhccCChhHHHHHHHHHHHh
Q 007818 146 VSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDE--VTMIGMVSACAQLEDLNLGREIHWYISES 209 (588)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 209 (588)
..+..+...|.+.|+.+.|++.|.++.+....+.. ..+-.+|+.+.-.+++..+...+.++...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35666777788888888888888887776444332 24556677777777777777777666554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.97 E-value=26 Score=36.21 Aligned_cols=42 Identities=10% Similarity=0.098 Sum_probs=29.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHH
Q 007818 49 AIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCA 90 (588)
Q Consensus 49 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (588)
+-++|...|++++|++.--.......+.++...+.+++.-|.
T Consensus 65 ~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~i 106 (929)
T KOG2062|consen 65 ASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCI 106 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHH
Confidence 346888889999999877665534556777777777665444
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=89.76 E-value=16 Score=33.60 Aligned_cols=45 Identities=2% Similarity=-0.131 Sum_probs=20.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007818 214 TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAK 258 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~ 258 (588)
+..+....+.++.+.++.+....+..-+..++...-...+.++.+
T Consensus 141 ~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~ 185 (280)
T PRK09687 141 STNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNS 185 (280)
T ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhc
Confidence 445555556666665554333333333334444444444444443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.9 Score=27.09 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
+++.+...|...|++++|..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455556666666666666666666654
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.25 E-value=18 Score=33.36 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=13.9
Q ss_pred HHHHHccCChHHHHHHHHHHH
Q 007818 522 ANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 522 ~~~~~~~g~~~~A~~~~~~~~ 542 (588)
+..+.+.++|++|.+.++...
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 445666777777777776543
|
It is also involved in sporulation []. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.02 E-value=16 Score=32.50 Aligned_cols=234 Identities=13% Similarity=0.092 Sum_probs=121.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHcccCChhHHHHHHHHHHH----h-CCCCcchHHHH
Q 007818 283 IIGGYVQAKRSKEALALFHEMQAT---GI--KPDAVTTVHCLSACSQLGALDDGIWIHRFIEK----E-NFNLNVVLGTA 352 (588)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~~~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~ 352 (588)
++..+.+.+++++.++.|+++..- .+ .-+..+.+.++...+...+.+.-..+++.-.+ . +-..-..+-+-
T Consensus 71 miKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtK 150 (440)
T KOG1464|consen 71 MIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTK 150 (440)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccch
Confidence 344455555555555555554321 01 12334455555555555555554444432221 1 11112223345
Q ss_pred HHHHhHhcCChhHHHHHhccCCCC---------------CcchHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHH
Q 007818 353 LVDMYAKCGNIAKALQVFHEMPER---------------NSLTYTAIIGGLALHGKALDAISYFSEMIGV-GLMPDEITF 416 (588)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~ 416 (588)
|...|...+.+....++++++.+. -...|..-+..|..+++......+|++...- ..-|.+...
T Consensus 151 Lgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm 230 (440)
T KOG1464|consen 151 LGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM 230 (440)
T ss_pred HhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 667777778888777777776521 1235777788888888888888888876542 235666655
Q ss_pred HHHHHH----hccCCchHHHHHHHHHhhhhc---CCCCCh--HHHHHHHHHHHhcC----ChHHHHHHHHhCCCCCCHhH
Q 007818 417 LGILSA----CCHGGLVDEGRKYFAQMSSIF---RLSPKL--KHYSCMVDLLGRSG----LLEEAEQLIRSMPMAADVVV 483 (588)
Q Consensus 417 ~~l~~~----~~~~~~~~~a~~~~~~~~~~~---~~~~~~--~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~ 483 (588)
..+-.+ +.+.|++++|..-|-++-+.+ |-+-.. --|..|+..+.+.| +-++|. -....|....
T Consensus 231 GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdPEIlA 306 (440)
T KOG1464|consen 231 GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDPEILA 306 (440)
T ss_pred hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCHHHHH
Confidence 544332 345788888765444443322 222212 23455666666665 111211 0123466667
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (588)
...++.+|. .++..+-++++..-...--+||.+..+.
T Consensus 307 MTnlv~aYQ-~NdI~eFE~Il~~~~~~IM~DpFIReh~ 343 (440)
T KOG1464|consen 307 MTNLVAAYQ-NNDIIEFERILKSNRSNIMDDPFIREHI 343 (440)
T ss_pred HHHHHHHHh-cccHHHHHHHHHhhhccccccHHHHHHH
Confidence 788888874 4455444444433333333455554443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.92 E-value=6.2 Score=28.83 Aligned_cols=63 Identities=11% Similarity=0.203 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
+.-++.+-++.+....+-|++......+++|-+.+|+..|.++++.++.+-+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3446667777777788899999999999999999999999999998886422 24445665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.86 E-value=2 Score=31.56 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 396 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
+..+-+..+....+-|++......+++|-+.+++..|.++|+.++.+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5666777777778899999999999999999999999999999988633 33336766664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.69 E-value=20 Score=33.25 Aligned_cols=135 Identities=14% Similarity=0.131 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc--cCC----hhHHHHHHHHHHHhCCC---CcchHHHHHHHHhHhcCCh
Q 007818 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQ--LGA----LDDGIWIHRFIEKENFN---LNVVLGTALVDMYAKCGNI 363 (588)
Q Consensus 293 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~~~----~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 363 (588)
+++.+.+++.|.+.|+.-+..+|.+....... ..+ ...+..+++.|.+..+- ++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667888889999888877776653333222 222 33455666666555321 112222222111 11111
Q ss_pred hHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhccCCc--hHHHHHHHHHh
Q 007818 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI--TFLGILSACCHGGL--VDEGRKYFAQM 439 (588)
Q Consensus 364 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~ 439 (588)
+. -.+.+..+|+.+.+.|+..+.. ....++..+....+ ..++.++++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11 1245667777777777665543 33334433333322 34777888888
Q ss_pred hhhcCCCCChHHHHHHHH
Q 007818 440 SSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~ 457 (588)
.+. ++++....|..++-
T Consensus 209 ~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHc-CCccccccccHHHH
Confidence 887 88877776665544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.60 E-value=0.56 Score=26.71 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=15.3
Q ss_pred CCChHHHHHHHHHHHhcCChHHHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLLEEAE 469 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~ 469 (588)
|-+...|..+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344666666666666666666664
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.49 E-value=1.3 Score=28.30 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=25.3
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
+.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 445678999999999999999999998866544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.03 E-value=16 Score=31.41 Aligned_cols=107 Identities=12% Similarity=-0.064 Sum_probs=57.3
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHH--HHhccCChhHHHHHHHHHHHhCCC-CChhhH
Q 007818 142 VRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVS--ACAQLEDLNLGREIHWYISESGLT-LTVPLA 218 (588)
Q Consensus 142 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 218 (588)
+.-+..||.+.-.+...|+++.|.+.|+...+.. |. .-|..+=+ ++.-.|++..|.+-+....+.... |-...|
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC--Cc-chHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 3345678888888888888998888888887653 22 12322222 233457777777766666555322 222222
Q ss_pred HHHHHHHHhcCChhHHH-HHHHhcCCCCcchHHHHHH
Q 007818 219 NALMDMYVKCGKLESAE-EIFDSMVNKTVVSCTTMIV 254 (588)
Q Consensus 219 ~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~ll~ 254 (588)
.-+.. ..-++.+|. .+.++....|..-|...|.
T Consensus 173 LYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV 206 (297)
T COG4785 173 LYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIV 206 (297)
T ss_pred HHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHH
Confidence 22221 223444444 3344444455455544433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.93 E-value=0.6 Score=37.90 Aligned_cols=86 Identities=9% Similarity=0.100 Sum_probs=63.4
Q ss_pred HHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhH
Q 007818 84 LLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPRE 163 (588)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 163 (588)
.++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...+.++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677778888899999999999877667788899999999999888888888884332 334556666777777777
Q ss_pred HHHHHHHhH
Q 007818 164 AIRLFRDMQ 172 (588)
Q Consensus 164 a~~~~~~m~ 172 (588)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=87.80 E-value=1.1 Score=24.22 Aligned_cols=25 Identities=20% Similarity=0.107 Sum_probs=11.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHH
Q 007818 518 YVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
+..++.++...|++++|...++...
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444444444444444444444443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.35 E-value=1.9 Score=39.40 Aligned_cols=87 Identities=15% Similarity=0.127 Sum_probs=61.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC
Q 007818 385 IGGLALHGKALDAISYFSEMIGVGLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (588)
..-|.++|.+++|+..|...+.. .| |++++..-..+|.+...+..|+.=...+... | ...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----d----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----D----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----h----HHHHHHHHHHH
Confidence 45699999999999999988774 56 8889988899999999998888777766642 1 23455555554
Q ss_pred -------ChHHHHHHHHhC-CCCCCHh
Q 007818 464 -------LLEEAEQLIRSM-PMAADVV 482 (588)
Q Consensus 464 -------~~~~A~~~~~~~-~~~~~~~ 482 (588)
...+|.+-++.. ..+|...
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 445554444433 3556543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=87.33 E-value=42 Score=35.30 Aligned_cols=439 Identities=8% Similarity=-0.071 Sum_probs=219.2
Q ss_pred HHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhc-CCCChhHHHHHHHHHHhCCChh
Q 007818 53 FLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG-FDVDMYVHNAVIHVFVSCGDLG 131 (588)
Q Consensus 53 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 131 (588)
..+.|++..+..+...+.. ..+ ..-..|..+...+ .....++ +-.-+.+.. .+.....-..-+..+.+.+++.
T Consensus 43 a~~~g~~~~~~~~~~~l~d-~pL-~~yl~y~~L~~~l-~~~~~~e---v~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~ 116 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKD-YPL-YPYLEYRQLTQDL-MNQPAVQ---VTNFIRANPTLPPARSLQSRFVNELARREDWR 116 (644)
T ss_pred HHHCCCHHHHHHHHHhccC-CCc-HhHHHHHHHHhcc-ccCCHHH---HHHHHHHCCCCchHHHHHHHHHHHHHHccCHH
Confidence 4567778777776666533 111 0111122221111 1112333 333333322 2233344445556667788888
Q ss_pred HHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 007818 132 LACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL 211 (588)
Q Consensus 132 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 211 (588)
.....+.. .+.+....-....+....|+.++|.+....+=..| ......+..++..+.+.|.+
T Consensus 117 ~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~l--------------- 179 (644)
T PRK11619 117 GLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQ--------------- 179 (644)
T ss_pred HHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCC---------------
Confidence 88884333 34455555566777888888888877777765444 23344555555555544433
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHH--Hh
Q 007818 212 TLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGY--VQ 289 (588)
Q Consensus 212 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~--~~ 289 (588)
+...+-.-+......|+...|..+...+..........++.... +...+...+.... ++...-..++.++ ..
T Consensus 180 --t~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~~~-~~~~~~~~~~~~l~Rla 253 (644)
T PRK11619 180 --DPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFARTTG-PTDFTRQMAAVAFASVA 253 (644)
T ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhccC-CChhhHHHHHHHHHHHH
Confidence 22222333555566777777777777662221222223333322 2333333333221 1111111111122 23
Q ss_pred cCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHH
Q 007818 290 AKRSKEALALFHEMQATG-IKPDAV--TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKA 366 (588)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 366 (588)
..+.+.|..++....... ..+... ....+.......+..+.+...+...... ..+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 456688888888775443 222222 1222322222332244555555443322 12444455556666788999999
Q ss_pred HHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-cCCchHH--HHHHHHHhh
Q 007818 367 LQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC-HGGLVDE--GRKYFAQMS 440 (588)
Q Consensus 367 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~--a~~~~~~~~ 440 (588)
...+..|... ...-.-=+..++...|+.++|...|+.+.. ..+ .|..+...-. ..-.+.. .-..-..+
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~~Lg~~~~~~~~~~~~~~~~~- 405 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQRLGEEYPLKIDKAPKPDSAL- 405 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHHHcCCCCCCCCCCCCchhhhh-
Confidence 9999988742 223334466776778999999999998743 222 3333332211 1101100 00000000
Q ss_pred hhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC---CCCCch
Q 007818 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELD---PQDSGI 517 (588)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~ 517 (588)
...| -..-+..+...|+...|...+..+....+......+.......|.++.++....+....+ -.-|..
T Consensus 406 ---~~~~----~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~ 478 (644)
T PRK11619 406 ---TQGP----EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLA 478 (644)
T ss_pred ---ccCh----HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcc
Confidence 0011 122345566789999998888776444555555666556667888888887765443211 011234
Q ss_pred HHHHHHHHHccCChHHHH
Q 007818 518 YVLLANMYRDSNMWEEAG 535 (588)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~ 535 (588)
|...+..+.+.-..+.++
T Consensus 479 ~~~~~~~~a~~~~v~~~l 496 (644)
T PRK11619 479 WNDEFRRYTSGKGIPQSY 496 (644)
T ss_pred hHHHHHHHHHHcCCCHHH
Confidence 555555555544555544
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.09 E-value=6.7 Score=34.30 Aligned_cols=58 Identities=12% Similarity=-0.093 Sum_probs=46.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...+...|++-++++...+++...|.|..+|..-+.+....=+..+|.+-|..+.+..
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 3344567888888888888888888888888888888888888888888888887654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.69 E-value=3 Score=35.67 Aligned_cols=61 Identities=21% Similarity=0.116 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChHHHHHHHHh-CCCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 454 CMVDLLGRSGLLEEAEQLIRS-MPMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
.-+..+.+.+...+|+...+. .+.+| +...-..++.-++-.|++++|..-++-+-++.|++
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 344555666677777666543 34455 44455555566677777777777777777776653
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.62 E-value=14 Score=33.21 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHcccCChhH
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTT-------VHCLSACSQLGALDD 330 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-------~~l~~~~~~~~~~~~ 330 (588)
.+-..+.+++++|+..+.++...|+..|..+. ..+...|...|+...
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 34456777888999999998888877665543 334444444444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.39 E-value=11 Score=37.77 Aligned_cols=152 Identities=16% Similarity=0.051 Sum_probs=95.7
Q ss_pred hHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 007818 357 YAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436 (588)
Q Consensus 357 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (588)
..-.|+++.|..++..++++ .-+.++.-+.++|-.++|+++ .+|+.- -.....+.|+++.|.++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la 660 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLA 660 (794)
T ss_pred HhhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHH
Confidence 34567888888877777643 234455556667777776654 233221 122334568888888776
Q ss_pred HHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
.+.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+-+.-..+...+.+...+|
T Consensus 661 ~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N-- 725 (794)
T KOG0276|consen 661 VEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN-- 725 (794)
T ss_pred Hhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc--
Confidence 5553 34568888888889999999998887763 24555555666676665555555554444432
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHH
Q 007818 517 IYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
....+|...|++++..+++..-
T Consensus 726 ---~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 ---LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---hHHHHHHHcCCHHHHHHHHHhc
Confidence 3344667788888887776543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.17 E-value=6.3 Score=39.29 Aligned_cols=132 Identities=16% Similarity=0.135 Sum_probs=87.5
Q ss_pred cHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCC
Q 007818 81 TYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGF 160 (588)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 160 (588)
..+.++.-+.+.|-.++|+.+ .+|+.. -.....+.|+++.|.++..+. .+..-|..|.++..+.++
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhccc
Confidence 344555666666666665543 233221 233445778888888877654 356678999999999999
Q ss_pred hhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHh
Q 007818 161 PREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 161 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
+..|.+.|..... |..|+-.+...|+.+....+-....+.|.. |...-+|...|+++++.+++..
T Consensus 682 l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 682 LPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 9999999887654 445666777777777666666666665543 4444566777888888777655
Q ss_pred c
Q 007818 241 M 241 (588)
Q Consensus 241 ~ 241 (588)
-
T Consensus 747 t 747 (794)
T KOG0276|consen 747 T 747 (794)
T ss_pred c
Confidence 4
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.14 E-value=47 Score=34.71 Aligned_cols=143 Identities=14% Similarity=0.219 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCC-CCcccHHHHHHHHHhcCChH
Q 007818 216 PLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE-KYVVPWNAIIGGYVQAKRSK 294 (588)
Q Consensus 216 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 294 (588)
.+...++..+...|++++|-...-.|...+..-|...+..+...++......++-.-.. .++..|..++..+.. .+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~ 471 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK 471 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHH
Confidence 34556677777788888888888887777777777666666666655444333322222 233347777777666 2222
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC
Q 007818 295 EALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 295 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 374 (588)
. |.+.+.. .+++...-..++++. . .++.+. .-+..+...|+..|...+++..|.+++-...
T Consensus 472 ~----F~e~i~~-Wp~~Lys~l~iisa~--~----------~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 472 G----FLELIKE-WPGHLYSVLTIISAT--E----------PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred H----HHHHHHh-CChhhhhhhHHHhhc--c----------hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 2 2222221 122222211222211 0 111111 1122333458889999999999999998887
Q ss_pred CCCc
Q 007818 375 ERNS 378 (588)
Q Consensus 375 ~~~~ 378 (588)
+++.
T Consensus 533 ~~~v 536 (846)
T KOG2066|consen 533 DKDV 536 (846)
T ss_pred ChHH
Confidence 6543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.43 E-value=12 Score=31.80 Aligned_cols=99 Identities=14% Similarity=0.009 Sum_probs=56.3
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCCh-----HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhC
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKL-----KHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHG 495 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~ 495 (588)
+...|++++|..-|..+... .++.. ..|..-..++.+.+.++.|.+-.... .+.|. ...+..-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 44556666666666666652 22221 22333344555666666666555443 33342 223333345667777
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 496 NVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
.++.|+.-|+++++.+|....+-...++
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 8888888888888888875544444443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.10 E-value=2.5 Score=36.69 Aligned_cols=83 Identities=10% Similarity=0.040 Sum_probs=36.7
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCCh-HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhHHHHHHH-HHHhhCCHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKL-KHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADVVVWGALFF-ACRLHGNVSI 499 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~~ 499 (588)
|.....++.|+..+.+... +.|+. .-|+.-+..+.+..+++.+.+--.+. .+.|+..--...+. +......++.
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 4444455555555554442 23443 33334444444555555444333322 23344332222222 2334455555
Q ss_pred HHHHHHHHh
Q 007818 500 GERAAMKLL 508 (588)
Q Consensus 500 A~~~~~~~~ 508 (588)
|+..+.++.
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 555555553
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.84 E-value=3.3 Score=40.98 Aligned_cols=99 Identities=16% Similarity=0.039 Sum_probs=68.3
Q ss_pred cCCchHHHHHHHHHhhhhcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHhHHHHHHHHHHhhCCHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSPK--LKHYSCMVDLLGRSGLLEEAEQLIRSM-P-MAADVVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~A 500 (588)
..|+...|...+..+... .|- ......|...+.+.|....|-.++.+. . ....+.++..+.+++....++++|
T Consensus 619 ~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 467888888887776532 332 223445666667777777777776543 2 234556677777888888888899
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
++.++.++++.|+++.+-+.|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999988888888777655433
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.70 E-value=0.68 Score=42.31 Aligned_cols=91 Identities=14% Similarity=0.134 Sum_probs=67.6
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHH
Q 007818 461 RSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (588)
..|.+++|++.|.... ..| ....+..-.+++.+.+....|++-+..+++++|+...-|-.-+.+..-.|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 5677888888877653 333 44455555666777778888888888888888888777877787888888888888888
Q ss_pred HHHHhcCCccCCc
Q 007818 539 KMMEERGVEKTPG 551 (588)
Q Consensus 539 ~~~~~~~~~~~~~ 551 (588)
....+.++.+..+
T Consensus 206 ~~a~kld~dE~~~ 218 (377)
T KOG1308|consen 206 ALACKLDYDEANS 218 (377)
T ss_pred HHHHhccccHHHH
Confidence 8888877765543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.50 E-value=1.8 Score=23.36 Aligned_cols=30 Identities=30% Similarity=0.109 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
.+..+...+...|+++.|...++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 466777788899999999999999998877
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.45 E-value=61 Score=34.55 Aligned_cols=155 Identities=15% Similarity=0.084 Sum_probs=73.1
Q ss_pred hcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChH---HHHHHH--HHHH
Q 007818 390 LHGKALDAISYFSEMIGV----GLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK---HYSCMV--DLLG 460 (588)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~--~~~~ 460 (588)
..|+++.|..+.+..... -..+....+..+..+..-.|++++|..+.....+. .-.-+.. .|..+. ..+.
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHH
Confidence 456666666666655443 11223334555555566667777777666655443 1112222 222222 2344
Q ss_pred hcCChHHHH--HHHHhC-----CCCC----CHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc----CCC--CCc-hHHHHH
Q 007818 461 RSGLLEEAE--QLIRSM-----PMAA----DVVVWGALFFACRLHGNVSIGERAAMKLLEL----DPQ--DSG-IYVLLA 522 (588)
Q Consensus 461 ~~g~~~~A~--~~~~~~-----~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~p~--~~~-~~~~l~ 522 (588)
.+|+...+. ..+... ..+| -..+...++.++.+ ++.+..-..+.+++ .|. ++. .+..|+
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA 625 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLA 625 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHH
Confidence 555322222 222222 1112 22344444444433 34444433333332 232 111 123677
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 523 NMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
.++...|+.++|...+.++......+
T Consensus 626 ~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 626 ELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 77778888888888877776544333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.14 E-value=18 Score=33.06 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=66.2
Q ss_pred cCCCChhHHHHHHHHHHhCCChhHHHHHhccCCC-------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc
Q 007818 109 GFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV-------RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV 181 (588)
Q Consensus 109 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 181 (588)
|.+....+...++..-....+++.++..+=++.. ++... .+.++.+. .=++++++.++..=+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 4444555555566655556777777776644321 12211 12233222 336778888888888889999999
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHh
Q 007818 182 TMIGMVSACAQLEDLNLGREIHWYISES 209 (588)
Q Consensus 182 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 209 (588)
+++.+|..+.+.++...|.++.-.+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999998888887777665
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=83.81 E-value=24 Score=32.11 Aligned_cols=122 Identities=15% Similarity=0.180 Sum_probs=85.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHc-cC-ChhhHHHHHHHHHHh-cCCCChhHHHHHHH
Q 007818 46 WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCAS-LG-LRFLGYEIFGHVLKL-GFDVDMYVHNAVIH 122 (588)
Q Consensus 46 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 122 (588)
|..|+. ++.-..+|+.+|+....+..+--|......+++.... .+ ....-.++.+.+... |-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 665553 3345678888887432212255566777777776664 22 344445555555543 34678888899999
Q ss_pred HHHhCCChhHHHHHhccC-----CCCCcccHHHHHHHHHhCCChhHHHHHHHH
Q 007818 123 VFVSCGDLGLACNVFDES-----CVRNLVSWNSLINGFVRSGFPREAIRLFRD 170 (588)
Q Consensus 123 ~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 170 (588)
.+++.+++..-.+.++.. +..|...|..+|......|+..-...+.++
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999999999999999873 345888999999999999998766666554
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.28 E-value=64 Score=33.89 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=42.2
Q ss_pred hHHHHHHHHH-hCCChHHHHHHHHHHHhcCCCCCCcc-----cHHHHHHHHHccCChhhHHHHHHHHHHhcCC----CCh
Q 007818 45 SWNVAIRGFL-ETGKMREAVDLYKQMLRNGGTRPDNF-----TYPLLFKVCASLGLRFLGYEIFGHVLKLGFD----VDM 114 (588)
Q Consensus 45 ~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~ 114 (588)
++-.+...+. ...+.+.|...+++... ..-+++.. ....++..+.+.+... |...++..++.--. +-.
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~-l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAIL-LCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 4555555555 45667777777766543 11112211 1123334444444333 66666665553211 111
Q ss_pred hHHHHH-HHHHHhCCChhHHHHHhcc
Q 007818 115 YVHNAV-IHVFVSCGDLGLACNVFDE 139 (588)
Q Consensus 115 ~~~~~l-~~~~~~~~~~~~A~~~~~~ 139 (588)
..+..+ +..+...+++..|.+.++.
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~ 164 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQS 164 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 222222 2222223566666666655
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.59 E-value=10 Score=28.05 Aligned_cols=48 Identities=15% Similarity=0.215 Sum_probs=33.4
Q ss_pred CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 476 PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 476 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
..-|++....+.+.+|.+.+++..|+++++-+...-.+...+|..++.
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 355888899999999999999999999998887655544447766653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.54 E-value=27 Score=29.00 Aligned_cols=120 Identities=13% Similarity=0.157 Sum_probs=67.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChH-HHHHH--HHHHHhcCC
Q 007818 389 ALHGKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLK-HYSCM--VDLLGRSGL 464 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~ 464 (588)
.+.+..++|+.-|..+.+.|...=+. .-..........|+...|...|.++-.. .-.|... -...| ...+...|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhcccc
Confidence 45566777777777777765432221 2222334455677777777777777654 2222211 11111 223456777
Q ss_pred hHHHHHHHHhCCCC--C-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 465 LEEAEQLIRSMPMA--A-DVVVWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 465 ~~~A~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
++......+-+..+ | ....-..|..+..+.|++..|...|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77777766665322 2 233444555566677788888777777765
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.43 E-value=2.8 Score=21.99 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 007818 453 SCMVDLLGRSGLLEEAEQLIR 473 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~ 473 (588)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555556666666655554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.18 E-value=11 Score=27.68 Aligned_cols=63 Identities=8% Similarity=0.039 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHH
Q 007818 58 KMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122 (588)
Q Consensus 58 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 122 (588)
+.-++.+-++.+.. ..+-|++....+.+++|.+.+++..|.++++-++... ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 34456666666666 5577888888888888888888888888888776432 123445555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=81.95 E-value=26 Score=33.95 Aligned_cols=56 Identities=13% Similarity=-0.001 Sum_probs=39.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhc--cCCchHHHHHHHHHhhhh
Q 007818 386 GGLALHGKALDAISYFSEMIGVGLMPDEI--TFLGILSACC--HGGLVDEGRKYFAQMSSI 442 (588)
Q Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 442 (588)
..+...+++..|.++++.+... ++++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778899999999988876 555554 4455555554 456788888888887763
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.93 E-value=38 Score=30.30 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=104.6
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHcccCChhHHHHHHHHHHH---hCC--CCcchHHHHHHHHhHhc
Q 007818 289 QAKRSKEALALFHEMQATGIKPDAV---TTVHCLSACSQLGALDDGIWIHRFIEK---ENF--NLNVVLGTALVDMYAKC 360 (588)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~ 360 (588)
+....++|+.-|++..+..-.-..+ .+..++....+.+++++....++++.. +.+ ..+....|++++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457888999999887754333333 445567778888888888887776642 222 22344567777766666
Q ss_pred CChhHHHHHhccCCC-----CCcc----hHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCH-------HHHHHHH
Q 007818 361 GNIAKALQVFHEMPE-----RNSL----TYTAIIGGLALHGKALDAISYFSEMIGVGL----MPDE-------ITFLGIL 420 (588)
Q Consensus 361 ~~~~~A~~~~~~~~~-----~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~~-------~~~~~l~ 420 (588)
.+.+--..+|+.-.+ ++.. +-.-|...|...+.+....++++++.+.-- ..|. ..|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 666655555544321 2222 234566777777777777777777765411 1111 2455556
Q ss_pred HHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHH----HHHHhcCChHHHH
Q 007818 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV----DLLGRSGLLEEAE 469 (588)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~ 469 (588)
+.|..+.+-.+-..+++....--.--|.+.....+- ....+.|++++|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 666666666666667766654323445544433221 1234556666664
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.67 E-value=18 Score=30.92 Aligned_cols=79 Identities=16% Similarity=0.114 Sum_probs=55.4
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHh---CCCCChhhHHHHHHHHHhcCCh
Q 007818 155 FVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISES---GLTLTVPLANALMDMYVKCGKL 231 (588)
Q Consensus 155 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 231 (588)
+.+.|+ +.|.+.|-.+...+.--++. .-..+..|....+.+++.+++....+. +-.+|+..+..|+..+.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~e-lq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAE-LQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHH-HHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445555 57788887777666443433 334444555577888888888887765 3367888899999999999988
Q ss_pred hHHH
Q 007818 232 ESAE 235 (588)
Q Consensus 232 ~~A~ 235 (588)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.85 E-value=9.5 Score=31.78 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcC----ChHHHHHHHHhC--------CCCCCHhHHHHHHHHHH
Q 007818 430 DEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSG----LLEEAEQLIRSM--------PMAADVVVWGALFFACR 492 (588)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g----~~~~A~~~~~~~--------~~~~~~~~~~~l~~~~~ 492 (588)
++|+.-|++.. .+.|+ ...+..+..+|...+ +..+|.++|++. ..+|+...|..-+....
T Consensus 52 edAisK~eeAL---~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 52 EDAISKFEEAL---KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHH---HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 34444444444 34566 477778888776544 344444544443 25688888887776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=80.83 E-value=3.6 Score=22.58 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 495 GNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
|+.+.|..++++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467888899999999889888888777653
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.65 E-value=62 Score=31.99 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=51.3
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhc
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLG 109 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 109 (588)
+.|+..|...+.-+.+.+.+.+.-.+|.+|...++..||...+.+.-. +....+++.|..++...++.+
T Consensus 102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~we-fe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWE-FEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhH-HhhccchHHHHHHHHHHhhcC
Confidence 348888988888888888899999999999886666666666544322 334445888999988888755
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.21 E-value=82 Score=33.08 Aligned_cols=169 Identities=14% Similarity=0.083 Sum_probs=92.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHhcCCCCCC---cccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 007818 50 IRGFLETGKMREAVDLYKQMLRNGGTRPD---NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (588)
++-+.+.+.+++|+++.+.... ..|. .......+..+...|+++.|-...-.|.. .+..-|..-...++.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~---~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e 435 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG---NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE 435 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC---CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence 5566778888999888776533 3342 23355566677777888888777777765 345555555566666
Q ss_pred CCChhHHHHHhccCCC-CCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHH
Q 007818 127 CGDLGLACNVFDESCV-RNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205 (588)
Q Consensus 127 ~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 205 (588)
.++......++-...+ -+...|..++..+.. .+ ..-|.+.++ ..+...|..+.-.-+...++
T Consensus 436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~---~Wp~~Lys~l~iisa~~~q~--------- 498 (846)
T KOG2066|consen 436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIK---EWPGHLYSVLTIISATEPQI--------- 498 (846)
T ss_pred ccccchhhccCCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHH---hCChhhhhhhHHHhhcchHH---------
Confidence 6665555444444333 355567777776665 22 222223322 12223333222111111111
Q ss_pred HHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCC
Q 007818 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKT 245 (588)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 245 (588)
.+. .-+......|+..|...+++..|..++-.+.+.+
T Consensus 499 -~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 499 -KQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKD 535 (846)
T ss_pred -Hhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChH
Confidence 111 1122233447888888888888888877776554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.6 bits (145), Expect = 1e-09
Identities = 26/191 (13%), Positives = 54/191 (28%), Gaps = 9/191 (4%)
Query: 293 SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352
+ A L + P L +LD + + A
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA 132
Query: 353 LVDMYAKCGNIAKALQV---FHEMPERNSL----TYTAIIGGLALHGKALDAISYFSEMI 405
+ A + H ++ L Y A++ G A G + + +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 406 GVGLMPDEITFLGILSACCHGGLVDEG-RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464
GL PD +++ L + QMS L + + ++ R+ +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATV 251
Query: 465 LEEAEQLIRSM 475
L+ ++ +
Sbjct: 252 LKAVHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.1 bits (141), Expect = 3e-09
Identities = 22/175 (12%), Positives = 55/175 (31%), Gaps = 8/175 (4%)
Query: 75 TRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLAC 134
P L + + G + A + L LA
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 135 NVFD-------ESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMV 187
++ + + L +N+++ G+ R G +E + + ++ + PD ++ +
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
Query: 188 SACAQLE-DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241
+ + D +S+ GL L L+ + L++ ++ +
Sbjct: 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 1e-08
Identities = 21/172 (12%), Positives = 49/172 (28%), Gaps = 24/172 (13%)
Query: 162 REAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221
+ A L + P E + ++ L++ + S++ L+ A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWN 281
+ +L A + + + Y N
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMY------------------------N 169
Query: 282 AIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIW 333
A++ G+ + KE + + ++ G+ PD ++ L + I
Sbjct: 170 AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIE 221
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.1 bits (136), Expect = 1e-08
Identities = 46/425 (10%), Positives = 108/425 (25%), Gaps = 51/425 (12%)
Query: 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREI---HWYISESGLTL 213
++ + ++ C + L L + H + L
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 214 TVPLANALMDMYVKCGKLESAEEIFDSM----VNKTVVSCTTMIVGYAKFGFLDIARKIF 269
T+ + NA+M + + G + + + + ++S + +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD--------- 214
Query: 270 DDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALD 329
+ + +M G+K A+ T LS + L
Sbjct: 215 ---------------------QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLA 389
+ V + L+ ++ + L + LA
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELA 313
Query: 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL 449
+S + + L L L R+ ++
Sbjct: 314 SRVC---VVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVY--EGR 368
Query: 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
+ LL ++ Q+++++P + A + R + + ++
Sbjct: 369 FSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQ 428
Query: 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKT------PGCSSIEVNGLLYE 563
Y+ + E R+ E G + P +E+ LL E
Sbjct: 429 ALQNHYRKYL---CLLASDAEVPEPCLPRQYWEALGAPEALREQPWPLPVQMELGKLLAE 485
Query: 564 FIVRD 568
+V+
Sbjct: 486 MLVQA 490
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-06
Identities = 82/566 (14%), Positives = 149/566 (26%), Gaps = 189/566 (33%)
Query: 5 GLISHG---FAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMRE 61
++ G + + D C + W L
Sbjct: 152 NVLIDGVLGSGKTWVAL----------DVCLSYKVQCKMDFKIFW-------LNLKNCNS 194
Query: 62 AVD-------LYKQMLRNGGTRPDN-FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVD 113
L Q+ N +R D+ L + R L + + + L L +
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLL-N 252
Query: 114 MYVHNA-VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172
V NA N F+ SC + L+ R Q
Sbjct: 253 --VQNAKAW-------------NAFNLSC-KILL--------------------TTRFKQ 276
Query: 173 LERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232
VT + L+ H + +TLT +
Sbjct: 277 --------VT-----------DFLSAATTTHISLDHHSMTLT----------------PD 301
Query: 233 SAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE--KYVVPWN-AIIGGYVQ 289
+ + K +LD DLP P +II
Sbjct: 302 EVKSLL------------------LK--YLDCR---PQDLPREVLTTNPRRLSIIA---- 334
Query: 290 AKRSKEALALFHEMQAT-----GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFN 344
+ AT + D +TT+ + + L L+ + F F
Sbjct: 335 --------ESIRDGLATWDNWKHVNCDKLTTI--IESS--LNVLEPAEYRKMFDRLSVFP 382
Query: 345 LNV-----VLGTALVDM-YAKCGNIAKALQVFHEMPERNSLTYTAIIGGL---------- 388
+ +L D+ + + L + + E+ T I +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 389 --ALHGKALDAISYFSEMIGVGLMPDEI-----TFLGI-LSACCHGGLVDEGRKYFAQMS 440
ALH +D + L+P + + +G L H + R F
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-- 499
Query: 441 SIFR-LSPKLKH-------YSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACR 492
FR L K++H +++ L + L+ + I + +V L F +
Sbjct: 500 --FRFLEQKIRHDSTAWNASGSILNTLQQ---LKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 493 LHGNVSIGERAAMKLLELDPQDSGIY 518
+ N+ + + + L +D I+
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIF 580
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 5e-06
Identities = 24/248 (9%), Positives = 63/248 (25%), Gaps = 17/248 (6%)
Query: 294 KEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTAL 353
++ + ++ + P+ + L G+ + L V
Sbjct: 16 QQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVR--MF 71
Query: 354 VDMYAKCGNIAKALQVFHEM----PERNSLTYTAIIGGLALH-GKALDAISYFSEMIGVG 408
+ A + + + T+ + + + A+ + +
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLE 131
Query: 409 LMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468
M + +D RK +M + + + V L L++A
Sbjct: 132 CMAMTV------QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185
Query: 469 EQLIRSMPMA--ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526
+ + M +++ G E + L+ D + L + +
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245
Query: 527 DSNMWEEA 534
E
Sbjct: 246 HLGKPPEV 253
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 41/308 (13%), Positives = 85/308 (27%), Gaps = 37/308 (12%)
Query: 250 TTMIVGYAKFGFLDIARKIFDDLP--EKYVVPWNAIIGGYVQAKRSKEALALFHEMQATG 307
+ + L A + EK R + LA+ +
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT--TKILE 333
Query: 308 IKPDAVTTVHCLSAC-SQLGALDDGI-WIHRFIE--KENFNLNVVLGTALVDMYAKCGNI 363
I P + A + G + + ++ E + +G Y I
Sbjct: 334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY----YLCVNKI 389
Query: 364 AKALQVFH---EMPERNSLTYTAIIGGLALH--GKALDAISYFSEMIGVGLMPDEIT--- 415
++A + F M + + + G+ AIS ++ L
Sbjct: 390 SEARRYFSKSSTMDPQFGPAWIGF--AHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYL 445
Query: 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL---- 471
FLG+ G + +Y ++F+ P L + + + ++ A
Sbjct: 446 FLGM--QHMQLGNILLANEYLQSSYALFQYDPLL--LNELGVVAFNKSDMQTAINHFQNA 501
Query: 472 --IRSMPMAADVVVWGALF---FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526
+ + + A R A + L L D+ ++ +A +Y
Sbjct: 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561
Query: 527 DSNMWEEA 534
+ A
Sbjct: 562 HKKIPGLA 569
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 34/273 (12%), Positives = 65/273 (23%), Gaps = 26/273 (9%)
Query: 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ-LGALDDGIW 333
+ VV + GG + + L + QA G+ P+ V + Q L + +
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVL--CQAHGLTPEQVVAIASHDGGKQALETVQALLP 161
Query: 334 IHR---FIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG-GLA 389
+ + E G + + + L V + AI G
Sbjct: 162 VLCQAHGLTPEQVVAIASNGGGKQAL----ETVQRLLPVLCQAHGLTPQQVVAIASNGGG 217
Query: 390 LH--GKALDAISYFSEMIGVGLMPDEITFLGILSACCHG-GLVDEGRKYFAQMSSIFRLS 446
+ + G L P ++ + V Q L+
Sbjct: 218 KQALETVQRLLPVLCQAHG--LTPQQVVAIASNGGGKQALETVQRLLPVLCQ---AHGLT 272
Query: 447 PKLKH-YSCMVDLLGRSGLLEEA----EQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501
P+ + ++ Q P VV + + V
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP--QQVVAIASNGGGKQALETVQRLL 330
Query: 502 RAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534
+ L PQ + +
Sbjct: 331 PVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 363
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 588 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.58 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.55 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.54 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.53 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.52 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.44 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.37 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.37 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.37 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.33 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.28 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.24 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.19 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.18 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.17 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.16 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.16 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.15 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.14 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.1 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.08 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.08 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.08 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.07 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.06 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.04 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.03 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.02 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.01 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.96 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.96 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.96 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.93 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.92 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.92 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.92 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.92 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.91 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.9 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.88 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.87 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.86 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.85 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.83 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.83 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.79 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.77 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.77 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.77 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.77 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.77 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.76 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.75 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.72 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.71 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.7 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.7 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.66 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.66 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.66 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.66 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.65 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.65 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.62 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.61 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.61 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.61 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.6 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.6 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.59 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.58 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.56 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.54 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.53 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.52 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.52 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.5 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.49 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.47 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.47 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.45 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.43 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.42 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.41 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.41 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.4 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.39 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.37 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.37 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.36 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.36 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.34 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.33 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.32 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.31 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.31 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.31 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.29 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.27 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.26 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.25 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.23 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.22 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.21 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.19 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.16 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.15 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.12 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.08 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.08 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.07 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.07 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.07 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.06 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.05 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.03 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.02 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.99 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.97 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.88 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.85 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.84 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.83 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.83 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.76 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.73 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.72 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.61 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.6 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.51 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.3 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.28 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.27 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.26 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.25 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.11 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.08 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.02 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.89 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.88 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.76 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.73 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.56 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.42 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.96 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.92 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.91 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 95.64 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.55 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.47 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.37 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.34 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.01 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 94.98 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.88 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.87 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.47 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.57 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.1 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.09 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.62 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 91.54 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.52 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.27 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.01 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.71 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.47 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.18 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.56 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.46 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.62 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.32 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.64 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 86.33 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.2 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.88 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 85.82 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.6 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 85.59 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.49 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.42 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.54 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.54 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 82.88 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.82 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 80.56 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=352.00 Aligned_cols=492 Identities=10% Similarity=-0.029 Sum_probs=307.6
Q ss_pred CCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHH
Q 007818 24 ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 103 (588)
..|.+..++..|..++.++...|+.+++.+.+.|++++|+.+|+++.. ..|+..++..++.+|.+.|++++|..+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp -----------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 567788888888888888999999999999999999999999999986 56888899999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCC-------------------cccHHHHHHHHHhCCChhHH
Q 007818 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRN-------------------LVSWNSLINGFVRSGFPREA 164 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~~a 164 (588)
.+... +++..+++.++.+|.+.|++++|+++|++..+.+ ..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 88653 6889999999999999999999999999754443 67899999999999999999
Q ss_pred HHHHHHhHHCCCCCC-cchHHHHHHHHhccCChhHHH--HH-HHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHh
Q 007818 165 IRLFRDMQLERVEPD-EVTMIGMVSACAQLEDLNLGR--EI-HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 165 ~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
+++|++|.+.+ |+ ...+..+...+...+..+.+. .+ +..+...+..+...+++.++..|.+.|++++|.++|++
T Consensus 220 ~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 297 (597)
T 2xpi_A 220 KECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS 297 (597)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 99999998753 43 334444444443333222111 11 33333333444445566667777778888888888888
Q ss_pred cCC--CCcchHHHHHHHHHhcCCHHHHHHHhhhCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 007818 241 MVN--KTVVSCTTMIVGYAKFGFLDIARKIFDDLPE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315 (588)
Q Consensus 241 ~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 315 (588)
+.+ ++..+|..++..+.+.|++++|.++|+.+.. .+..+|+.++.++...|++++|.++++++.+.. +.+..++
T Consensus 298 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 376 (597)
T 2xpi_A 298 INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTW 376 (597)
T ss_dssp STTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred hhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHH
Confidence 766 5666677777777777766666666666532 344456666666666666666666666666432 3345555
Q ss_pred HHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC---CCCcchHHHHHHHHHhcC
Q 007818 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP---ERNSLTYTAIIGGLALHG 392 (588)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~ 392 (588)
..+...|.+.|++++|..+|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|..++.+|.+.|
T Consensus 377 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 455 (597)
T 2xpi_A 377 LAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence 566666666666666666666655542 1234455555555555555555555555543 124455555555555555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhc---CCCCC--hHHHHHHHHHHHhcCChHH
Q 007818 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF---RLSPK--LKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~ 467 (588)
++++|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++
T Consensus 456 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 456 NILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 5555555555555432 3344555555555555555555555555554421 22343 4455555555555555555
Q ss_pred HHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 468 AEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 468 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
|.++++++. ..| +..+|..+..+|...|++++|...++++++++|+++.++..++.+|
T Consensus 535 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 535 AIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 555555542 122 4455555555555555555555555555555555555555555444
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=336.13 Aligned_cols=479 Identities=11% Similarity=-0.013 Sum_probs=396.1
Q ss_pred HhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHH
Q 007818 54 LETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLA 133 (588)
Q Consensus 54 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 133 (588)
...|....+...+..+. .++...|+.++..+.+.|++++|..+++++.+.. |+..++..++.+|.+.|++++|
T Consensus 64 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS-----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHH
T ss_pred cccCccCCCCCccccch-----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHH
Confidence 34455555555554442 2567889999999999999999999999999654 7888999999999999999999
Q ss_pred HHHhccC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHC---------------CCCCCcchHHHHHHHHhccCCh
Q 007818 134 CNVFDES--CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLE---------------RVEPDEVTMIGMVSACAQLEDL 196 (588)
Q Consensus 134 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---------------~~~p~~~~~~~ll~~~~~~~~~ 196 (588)
..+|+++ .+++..+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 137 KCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 9999987 5678999999999999999999999999954322 2234577899999999999999
Q ss_pred hHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHH---HHhcCCCC----cchHHHHHHHHHhcCCHHHHHHHh
Q 007818 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI---FDSMVNKT----VVSCTTMIVGYAKFGFLDIARKIF 269 (588)
Q Consensus 197 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~---~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~ 269 (588)
++|.+.|+.+.+.+.. +...+..+...+...+..+.+... +..+...+ ...|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 9999999999987533 455566565554443332222111 22222222 234555677788999999999999
Q ss_pred hhCCC--CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc
Q 007818 270 DDLPE--KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347 (588)
Q Consensus 270 ~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 347 (588)
+.+.. ++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99987 677779999999999999999999999999875 4477889999999999999999999999998664 4467
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 424 (588)
.+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 8899999999999999999999998763 467799999999999999999999999999874 557889999999999
Q ss_pred cCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HhHHHHHHHHHHhhC
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-------PMAAD--VVVWGALFFACRLHG 495 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~~ 495 (588)
+.|++++|.++|+++.+. .+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|
T Consensus 453 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 999999999999999974 3557899999999999999999999999987 33676 789999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 496 NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 496 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
++++|+..++++++..|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-27 Score=227.78 Aligned_cols=369 Identities=13% Similarity=0.065 Sum_probs=260.1
Q ss_pred HHHhCCChhHHHHHHHHhHHCCCCCC-cchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChh
Q 007818 154 GFVRSGFPREAIRLFRDMQLERVEPD-EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232 (588)
Q Consensus 154 ~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 232 (588)
.+.+.|++++|++.+.++.+. .|+ ...+..+...+...|+.++|...++...+.. +.+...+..+...+.+.|+++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 334445555555555444433 222 2223333344444555555555554444432 224444555555555555555
Q ss_pred HHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHhhhCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007818 233 SAEEIFDSMVN--K-TVVSCTTMIVGYAKFGFLDIARKIFDDLPE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306 (588)
Q Consensus 233 ~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 306 (588)
+|...|+++.+ | +...|..+..++.+.|++++|.+.|+.+.. .+...+..+...+...|++++|.+.|+++.+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55555554422 1 223444455555555555555555544432 22333666777788888888888888888875
Q ss_pred CCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHH
Q 007818 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTA 383 (588)
Q Consensus 307 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 383 (588)
. +.+..++..+...+...|++++|...++++.+.++ .+...+..+...+...|++++|...+++..+ .+..++..
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 242 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHH
Confidence 3 33567788888888888999999998888887653 3456778888888999999999988887652 35678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (588)
+...+...|++++|+..|+++.+.+ +.+..++..+..++.+.|++++|.+.++++.+. .+.+..++..++..+.+.|
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcC
Confidence 9999999999999999999998864 345678888999999999999999999999874 4567888999999999999
Q ss_pred ChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCC
Q 007818 464 LLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530 (588)
Q Consensus 464 ~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (588)
++++|.+.++++. ..| +...+..+...+.+.|++++|+..++++++..|+++.++..++.++...|+
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999998873 344 577888888999999999999999999999999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-25 Score=219.66 Aligned_cols=352 Identities=14% Similarity=0.086 Sum_probs=306.0
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhcCCH
Q 007818 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN---KTVVSCTTMIVGYAKFGFL 262 (588)
Q Consensus 186 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~ 262 (588)
+...+.+.|++++|.+.+..+.+..+ .+...+..+...+...|++++|...++...+ .+...|..+...+.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 34567789999999999999988743 3567778888999999999999999988744 3567899999999999999
Q ss_pred HHHHHHhhhCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcccCChhHHHHHHHHH
Q 007818 263 DIARKIFDDLPE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD-AVTTVHCLSACSQLGALDDGIWIHRFI 338 (588)
Q Consensus 263 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 338 (588)
++|.+.|+.+.. .+...|..+..++...|++++|.+.|+++.+. .|+ ...+..+...+...|++++|...++.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999998754 33445899999999999999999999999986 354 455667788888999999999999999
Q ss_pred HHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007818 339 EKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEIT 415 (588)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 415 (588)
.+.. +.+...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..+++..... +.+..+
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 8874 23567889999999999999999999998863 345678889999999999999999999998853 335678
Q ss_pred HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHh
Q 007818 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRL 493 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 493 (588)
+..+..++...|++++|.+.++++.+. .+.+...+..++..+.+.|++++|.+.++++. .+++..++..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999873 34557889999999999999999999999873 34578899999999999
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
.|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999874
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=232.88 Aligned_cols=182 Identities=15% Similarity=0.162 Sum_probs=173.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCC---------hhHHHHHHHHHHHhCCCCcchHH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA---------LDDGIWIHRFIEKENFNLNVVLG 350 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 350 (588)
++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 788899999999999999999999999999999999999999987654 57899999999999999999999
Q ss_pred HHHHHHhHhcCChhHHHHHhccCC----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 007818 351 TALVDMYAKCGNIAKALQVFHEMP----ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426 (588)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 426 (588)
+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999999987 4799999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (588)
|++++|.+++++|.+. +..|+..+|+.++..+...
T Consensus 189 g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 9999999999999998 9999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=232.61 Aligned_cols=185 Identities=15% Similarity=0.204 Sum_probs=173.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCC---------hhhHHHHHHHHHHhcCCCC
Q 007818 43 SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGL---------RFLGYEIFGHVLKLGFDVD 113 (588)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~ 113 (588)
...++.+|++|++.|+.++|+++|++|.+ .|++||..||+.+|.+|++.+. ++.|.++|++|.+.|+.||
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 34688899999999999999999999999 7899999999999999987654 6789999999999999999
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccC----CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 007818 114 MYVHNAVIHVFVSCGDLGLACNVFDES----CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSA 189 (588)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 189 (588)
..+|+.+|.+|++.|++++|.++|++| ..||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999875 5689999999999999999999999999999999999999999999999
Q ss_pred HhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhc
Q 007818 190 CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC 228 (588)
Q Consensus 190 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 228 (588)
|++.|+.++|.+++++|.+.|..|+..||+.++..+...
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.3e-24 Score=216.21 Aligned_cols=440 Identities=12% Similarity=-0.034 Sum_probs=249.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHH
Q 007818 43 SFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIH 122 (588)
Q Consensus 43 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 122 (588)
...|......+.+.|++++|+..|+++.. ..|+...+..+..++...|++++|...++.+.+.+ |.+...+..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALE---LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh---cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 34566778888888999999999998887 34788888888888888899999999999888865 345667777888
Q ss_pred HHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHH
Q 007818 123 VFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLG 199 (588)
Q Consensus 123 ~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 199 (588)
++...|++++|...|++. .+++......++..+........+.+.+..+...+..|+...+..-.......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------ 155 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ------ 155 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc------
Confidence 888888888888887763 33344444445544444333333333333333222222222111100000000
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCC-CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcc
Q 007818 200 REIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNK-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVV 278 (588)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 278 (588)
...|+.... ..+.......... ..+..+ +...
T Consensus 156 ----------~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~------------------------------ 188 (514)
T 2gw1_A 156 ----------ENLPSVTSM----ASFFGIFKPELTF---ANYDESNEADK------------------------------ 188 (514)
T ss_dssp -----------CCCCHHHH----HHHHTTSCCCCCC---SSCCSSCHHHH------------------------------
T ss_pred ----------cCCchhHHH----HHHHhhcCHHHHH---HHhcCCcHHHH------------------------------
Confidence 011111111 0111110000000 000000 0111
Q ss_pred cHHHHHHHHHh---cCChHHHHHHHHHHHH-----CCCC--------CCHHHHHHHHHHHcccCChhHHHHHHHHHHHhC
Q 007818 279 PWNAIIGGYVQ---AKRSKEALALFHEMQA-----TGIK--------PDAVTTVHCLSACSQLGALDDGIWIHRFIEKEN 342 (588)
Q Consensus 279 ~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 342 (588)
+......+.. .|++++|...++++.+ .... .+..++..+...+...|+++.|...++.+.+..
T Consensus 189 -~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 267 (514)
T 2gw1_A 189 -ELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF 267 (514)
T ss_dssp -HHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 1111111221 4445555555554444 1101 122344445555555666666666666555554
Q ss_pred CCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007818 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGI 419 (588)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 419 (588)
.. ...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+
T Consensus 268 ~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 344 (514)
T 2gw1_A 268 PR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQL 344 (514)
T ss_dssp CC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHH
T ss_pred cc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHH
Confidence 33 55555666666666666666666665442 245566667777777777777777777776653 3345566677
Q ss_pred HHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HhHHHHHHHHH
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAAD----VVVWGALFFAC 491 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~ 491 (588)
...+...|++++|...++++.+. .+.+...+..++..|.+.|++++|.+.++++. ..++ ...+..+...+
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 422 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLL 422 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 77777777777777777777663 23345667777777777777777777776652 1122 23666667777
Q ss_pred Hh---hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 492 RL---HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 492 ~~---~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.. .|++++|...++++++..|+++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 423 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 423 TRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 77 7777777777777777777777777777777777777777777777776654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-23 Score=209.76 Aligned_cols=430 Identities=10% Similarity=-0.024 Sum_probs=244.5
Q ss_pred ccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHH
Q 007818 80 FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFV 156 (588)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~ 156 (588)
..+..+...+.+.|++++|...|+++.+.. |.++..+..+..+|...|++++|++.+++. .+.+..++..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 445666667777777777777777777765 345666777777777777777777777663 3445566666777777
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCC--CCChhhHHHHHHHHHhcCChhHH
Q 007818 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL--TLTVPLANALMDMYVKCGKLESA 234 (588)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 234 (588)
..|++++|++.|+.+.. .|+.. ...+..+...+....+...++.+..... .+........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 77777777777753321 22211 1112223333334455555555433210 00011112223334444444444
Q ss_pred HHHHHhcCCCCcc---hHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007818 235 EEIFDSMVNKTVV---SCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPD 311 (588)
Q Consensus 235 ~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 311 (588)
...+......+.. ....+...+...+ .......|++++|..+++++.+.. |+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~a~~~~~~A~~~~~~~l~~~--p~ 234 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATD-----------------------EGYLVANDLLTKSTDMYHSLLSAN--TV 234 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSH-----------------------HHHHHHHHHHHHHHHHHHHHHC----CC
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhh-----------------------hhhHHHHHHHHHHHHHHHHHHHHC--CC
Confidence 4444433332221 1111111110000 000111235566666666666542 32
Q ss_pred --------HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcch
Q 007818 312 --------AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLT 380 (588)
Q Consensus 312 --------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~ 380 (588)
..++..+...+...|+++.|...++.+.+.. |+...+..+...+...|++++|...++++.+ .+..+
T Consensus 235 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 312 (537)
T 3fp2_A 235 DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHH
T ss_pred cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHH
Confidence 1234444455566666777777776666653 2355566666666777777777777666542 34556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
|..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..++..+.
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 6677777777777777777777776643 334456667777777777777777777777763 2344566777777777
Q ss_pred hcCChHHHHHHHHhCC----CCC----CHhHHHHHHHHHHhh----------CCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007818 461 RSGLLEEAEQLIRSMP----MAA----DVVVWGALFFACRLH----------GNVSIGERAAMKLLELDPQDSGIYVLLA 522 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (588)
..|++++|.+.++++. ..+ ....+......+... |++++|+..++++++..|+++.++..++
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 7777777777777651 111 112233344455556 7778888888888877777777777788
Q ss_pred HHHHccCChHHHHHHHHHHHhcC
Q 007818 523 NMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.+|.+.|++++|.+.++++.+..
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC
Confidence 88888888888888887776654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-21 Score=195.50 Aligned_cols=339 Identities=12% Similarity=0.038 Sum_probs=234.4
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHH
Q 007818 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223 (588)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 223 (588)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+.. +...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 45567777777788888888888888877652 445667777777888888888888888888777433 5677788888
Q ss_pred HHHhcCChhHHHHHHHhcCCCCc------chHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHH
Q 007818 224 MYVKCGKLESAEEIFDSMVNKTV------VSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEAL 297 (588)
Q Consensus 224 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 297 (588)
+|...|++++|.+.|+++.+.++ ..+..+...+...+ +..+...+...|++++|.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHHHHH
Confidence 88888888888888888755433 33333333322111 233345566677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCC
Q 007818 298 ALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERN 377 (588)
Q Consensus 298 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 377 (588)
..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. ..+
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------------------~~~ 210 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--------------------------------NDN 210 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--------------------------------CSC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------------------------------CCC
Confidence 7777777642 2344445555555555555555555555444332 123
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHH------------HHHhccCCchHHHHHHHHHhhhhcC
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPD-EITFLGI------------LSACCHGGLVDEGRKYFAQMSSIFR 444 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~ 444 (588)
..+|..++..|...|++++|+..|+++... .|+ ...+..+ ...+.+.|++++|..+|+++.+.
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-- 286 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-- 286 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 445556666666666666666666666653 333 2233332 77888889999999999998875
Q ss_pred CCCC-----hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch
Q 007818 445 LSPK-----LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517 (588)
Q Consensus 445 ~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (588)
.|+ ...+..++.++.+.|++++|.+.++++. ..| +...|..++.+|...|++++|...+++++++.|+++.+
T Consensus 287 -~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 365 (450)
T 2y4t_A 287 -EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365 (450)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH
T ss_pred -CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHH
Confidence 233 3477888999999999999999998863 334 67889999999999999999999999999999999999
Q ss_pred HHHHHH------------HHHccC-----ChHHHHHHHHHH
Q 007818 518 YVLLAN------------MYRDSN-----MWEEAGKVRKMM 541 (588)
Q Consensus 518 ~~~l~~------------~~~~~g-----~~~~A~~~~~~~ 541 (588)
+..++. .|...| +.+++.+.+++.
T Consensus 366 ~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 366 REGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999884 455555 566778887763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-21 Score=196.69 Aligned_cols=455 Identities=10% Similarity=-0.074 Sum_probs=299.7
Q ss_pred chhhHHHHhhcccCCCChhhHHhhcccCC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC-cccHHHHHH
Q 007818 11 FAPSRLIAFCAISESKNLDYCTKILFNVQ--NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD-NFTYPLLFK 87 (588)
Q Consensus 11 ~~~~~ll~~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 87 (588)
..+..+...|. +.|++++|...|+++. .|+..+|..+..++.+.|++++|++.|+++.+ ..|+ ...+..+..
T Consensus 7 ~~~~~~g~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 7 LALKDKGNQFF--RNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALE---LKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHH--HTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc---cChHHHHHHHHHHH
Confidence 34555666777 8999999999999875 67999999999999999999999999999988 3354 568888999
Q ss_pred HHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCC----CCcccHHHHHHHHHhCCChhH
Q 007818 88 VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCV----RNLVSWNSLINGFVRSGFPRE 163 (588)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 163 (588)
++...|++++|...|+.+.+.+. ++......++..+........+.+.+..+.. ++...++.-............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 99999999999999999998763 4444555555554443333333333322110 111111110000011111111
Q ss_pred HHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHh---cCChhHHHHHHHh
Q 007818 164 AIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVK---CGKLESAEEIFDS 240 (588)
Q Consensus 164 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 240 (588)
...+...+......+.... ...+.+...+......+.. .|++++|...|++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFAN--------------------------YDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSS--------------------------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHH--------------------------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 1111111111111111000 0001112223333333332 5556666555554
Q ss_pred cCC-----C--CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007818 241 MVN-----K--TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAV 313 (588)
Q Consensus 241 ~~~-----~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 313 (588)
+.+ . ++..-.. ...+...+..+...+...|++++|...++++.+.. |+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~ 271 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKL---------------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVN 271 (514)
T ss_dssp HHHHHHHHTTTSTTCHHH---------------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHhhhhhccCcccccc---------------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHH
Confidence 422 0 0000000 00011225556666777778888888888777754 3366
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC---CCCcchHHHHHHHHHh
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP---ERNSLTYTAIIGGLAL 390 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 390 (588)
.+..+..++...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++. ..+...+..+...+..
T Consensus 272 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 350 (514)
T 2gw1_A 272 SYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR 350 (514)
T ss_dssp HHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH
Confidence 67777778888888888888888777654 2356677888888888889998888888764 2356778888889999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHh---cC
Q 007818 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGR---SG 463 (588)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g 463 (588)
.|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+...-.++ ...+..++..+.. .|
T Consensus 351 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 ENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred cCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 999999999999988753 445678888899999999999999999998765222222 3488889999999 99
Q ss_pred ChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007818 464 LLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522 (588)
Q Consensus 464 ~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (588)
++++|.+.++++. ..| +...+..+...+...|++++|...+++++++.|+++..+..+.
T Consensus 430 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 9999999998873 233 5778888899999999999999999999999999888877664
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-21 Score=199.28 Aligned_cols=445 Identities=11% Similarity=-0.009 Sum_probs=318.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHH
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (588)
....|..+...+.+.|++++|++.|+++... .+.+...+..+..++...|++++|...++++.+.+ +.+...+..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHH
Confidence 3456888999999999999999999999882 23356788889999999999999999999999976 45678899999
Q ss_pred HHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCC--CCCCcchHHHHHHHHhccCChhHH
Q 007818 122 HVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLER--VEPDEVTMIGMVSACAQLEDLNLG 199 (588)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a 199 (588)
.++...|++++|...|+.+ ..++......+..+...+....|...++++.... ..+........+..+....+.+.+
T Consensus 101 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 9999999999999999643 2223333334455566666788999999886531 011111112233334444444444
Q ss_pred HHHHHHHHHhCCCCChh-hHHHHHHHHHhc--------CChhHHHHHHHhcCCCCcc---hHHHHHHHHHhcCCHHHHHH
Q 007818 200 REIHWYISESGLTLTVP-LANALMDMYVKC--------GKLESAEEIFDSMVNKTVV---SCTTMIVGYAKFGFLDIARK 267 (588)
Q Consensus 200 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~ 267 (588)
...+..... ..+... ....+...+... |++++|..+++.+.+.++. .+..+..
T Consensus 180 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~------------- 244 (537)
T 3fp2_A 180 VSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL------------- 244 (537)
T ss_dssp HHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH-------------
T ss_pred HHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH-------------
Confidence 333221111 111111 223333332222 3666777777666543322 1221111
Q ss_pred HhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc
Q 007818 268 IFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347 (588)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 347 (588)
.+..+...+...|++++|...++.+.+. .|+...+..+...+...|+++.|...++.+.+... .+.
T Consensus 245 -----------~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 310 (537)
T 3fp2_A 245 -----------ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYP 310 (537)
T ss_dssp -----------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCH
T ss_pred -----------HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCH
Confidence 1455667788899999999999999886 46678888899999999999999999999988753 356
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 424 (588)
.++..+...+...|++++|...++++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 7888999999999999999999998763 356789999999999999999999999998864 445678888999999
Q ss_pred cCCchHHHHHHHHHhhhhcCCCC----ChHHHHHHHHHHHhc----------CChHHHHHHHHhCC-CCC-CHhHHHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSP----KLKHYSCMVDLLGRS----------GLLEEAEQLIRSMP-MAA-DVVVWGALF 488 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~-~~~-~~~~~~~l~ 488 (588)
..|++++|...++++.+.....+ ....+..+...+.+. |++++|...++++. ..| +...+..+.
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999876521111 123345566778888 99999999999873 334 677889999
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
..+...|++++|...+++++++.|.++.....
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999987766543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-21 Score=188.89 Aligned_cols=304 Identities=13% Similarity=0.081 Sum_probs=227.0
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHhhhCCC---CCcccHHHHHHHH
Q 007818 214 TVPLANALMDMYVKCGKLESAEEIFDSMVN---KTVVSCTTMIVGYAKFGFLDIARKIFDDLPE---KYVVPWNAIIGGY 287 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 287 (588)
+...+..+...+.+.|++++|..+|+.+.+ .+...+..+..++...|++++|...|+.+.. .+...+..+..+|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 566778888888888888888888887643 2445566666666666666666666655433 2233355555666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCCh
Q 007818 288 VQAKRSKEALALFHEMQATGIKPDA----VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363 (588)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (588)
...|++++|.+.|+++.+. .|+. ..+..+...+. ...+..+...+...|++
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDE-----------------------MQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcCCH
Confidence 6666666666666665553 2322 22222222210 01122345567888999
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhh
Q 007818 364 AKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440 (588)
Q Consensus 364 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 440 (588)
++|...|+++.+ .+...+..++.+|...|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.
T Consensus 160 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988763 466788899999999999999999999998763 5567899999999999999999999999998
Q ss_pred hhcCCCCChHHHHHH------------HHHHHhcCChHHHHHHHHhCC-CCCC-----HhHHHHHHHHHHhhCCHHHHHH
Q 007818 441 SIFRLSPKLKHYSCM------------VDLLGRSGLLEEAEQLIRSMP-MAAD-----VVVWGALFFACRLHGNVSIGER 502 (588)
Q Consensus 441 ~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~~l~~~~~~~~~~~~A~~ 502 (588)
.. .+.+...+..+ +..+.+.|++++|.+.|+++. ..|+ ...+..++..+.+.|++++|+.
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 74 23345555444 888999999999999999873 3344 4477888888999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998754
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.9e-19 Score=169.02 Aligned_cols=303 Identities=12% Similarity=0.067 Sum_probs=191.7
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhcCCHHHHHHHhhhCCC---CCcccHHHHHHHH
Q 007818 214 TVPLANALMDMYVKCGKLESAEEIFDSMVN---KTVVSCTTMIVGYAKFGFLDIARKIFDDLPE---KYVVPWNAIIGGY 287 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 287 (588)
++..+..+...+...|++++|...|+.+.+ .++..+..+...+...|++++|...++.+.. .+...+..+...+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 345667778888888888888888887743 2344555666666666666666666665432 2233355566666
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC---C-HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCCh
Q 007818 288 VQAKRSKEALALFHEMQATGIKP---D-AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNI 363 (588)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~p---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 363 (588)
...|++++|...++++.+. .| + ...+..+.... ....+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCH
Confidence 6666666666666666553 23 1 11121111000 000112234566677777
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhh
Q 007818 364 AKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMS 440 (588)
Q Consensus 364 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 440 (588)
++|...++++.+ .+...+..+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777766542 345566677777777777777777777777653 4455667777777777777777777777777
Q ss_pred hhcCCCCChHHHH------------HHHHHHHhcCChHHHHHHHHhCC-CCCC-H----hHHHHHHHHHHhhCCHHHHHH
Q 007818 441 SIFRLSPKLKHYS------------CMVDLLGRSGLLEEAEQLIRSMP-MAAD-V----VVWGALFFACRLHGNVSIGER 502 (588)
Q Consensus 441 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~----~~~~~l~~~~~~~~~~~~A~~ 502 (588)
+. .+.+...+. .++..+.+.|++++|.+.++++. ..|+ . ..+..+...+...|++++|..
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 63 122233222 22556777888888888877652 2232 2 224446666777888888888
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 503 AAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 503 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
.++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888887764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-18 Score=166.73 Aligned_cols=321 Identities=11% Similarity=-0.011 Sum_probs=238.7
Q ss_pred cchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHH
Q 007818 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN---KTVVSCTTMIVGY 256 (588)
Q Consensus 180 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~ 256 (588)
...+..+...+...|++++|...++.+.+... .+...+..+..++...|++++|...++++.+ .+...+..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 45677788899999999999999999998744 3678899999999999999999999999854 3567888999999
Q ss_pred HhcCCHHHHHHHhhhCCCCCc---cc---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhH
Q 007818 257 AKFGFLDIARKIFDDLPEKYV---VP---WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDD 330 (588)
Q Consensus 257 ~~~~~~~~a~~~~~~~~~~~~---~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 330 (588)
...|++++|...|+.+...++ .. +..+...+ . ...+..+...+...|++++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCHHH
Confidence 999999999999998876554 22 22221100 0 0112233344555566666
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007818 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407 (588)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 407 (588)
|...++.+.+... .+...+..+..++...|++++|...++++.+ .+...+..+...+...|++++|...+++..+.
T Consensus 139 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 217 (359)
T 3ieg_A 139 AITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 217 (359)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666555432 2445566677777777777777777776553 34567777788888888888888888887775
Q ss_pred CCCCCHHHHH------------HHHHHhccCCchHHHHHHHHHhhhhcCCCCCh----HHHHHHHHHHHhcCChHHHHHH
Q 007818 408 GLMPDEITFL------------GILSACCHGGLVDEGRKYFAQMSSIFRLSPKL----KHYSCMVDLLGRSGLLEEAEQL 471 (588)
Q Consensus 408 ~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~ 471 (588)
. +.+...+. .+...+.+.|++++|...++++.+. . +.+. ..+..+...+...|++++|.+.
T Consensus 218 ~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 218 D-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp C-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred C-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3 22333322 2366688899999999999999875 2 2233 3355678899999999999999
Q ss_pred HHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc
Q 007818 472 IRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528 (588)
Q Consensus 472 ~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (588)
++++. ..| +...+..+...+...|++++|...+++++++.|+++.++..+..+....
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 99873 344 6788999999999999999999999999999999999988888776543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.9e-18 Score=163.00 Aligned_cols=250 Identities=13% Similarity=0.066 Sum_probs=175.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhCCCCcchHHHHHHHHhH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG-ALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (588)
+..++.++...|++++|...++++.+.. +.+...+..+...+...| ++++|...++.+.+.. +.+...+..+..++.
T Consensus 59 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 136 (330)
T 3hym_B 59 LPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFA 136 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3344444555555666666666555542 223445555555555566 5666666666555443 223455666677777
Q ss_pred hcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHH
Q 007818 359 KCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKY 435 (588)
Q Consensus 359 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 435 (588)
..|++++|...++++.+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 137 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 137 VESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 77777777777766552 245566677788888888888888888887763 44567788888888888888888888
Q ss_pred HHHhhhhcC-------CCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHH
Q 007818 436 FAQMSSIFR-------LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMK 506 (588)
Q Consensus 436 ~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 506 (588)
++++.+... .+.....+..++..|...|++++|.+.++++. ..| +...+..+...+...|++++|...+++
T Consensus 216 ~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 216 FLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp HHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 888876421 13346788888999999999999999988763 233 566788888888899999999999999
Q ss_pred HhccCCCCCchHHHHHHHH-HccCChH
Q 007818 507 LLELDPQDSGIYVLLANMY-RDSNMWE 532 (588)
Q Consensus 507 ~~~~~p~~~~~~~~l~~~~-~~~g~~~ 532 (588)
+++..|+++.++..++.++ ...|+.+
T Consensus 296 al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 296 ALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999999999988 4566654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-18 Score=162.57 Aligned_cols=266 Identities=12% Similarity=-0.018 Sum_probs=230.0
Q ss_pred CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHH
Q 007818 275 KYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALV 354 (588)
Q Consensus 275 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 354 (588)
.++..+..++..+...|++++|.++++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455567888888999999999999999998864 3455566677888899999999999999998875 33677888899
Q ss_pred HHhHhcC-ChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchH
Q 007818 355 DMYAKCG-NIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD 430 (588)
Q Consensus 355 ~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 430 (588)
..+...| ++++|...|++..+ .+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998764 356789999999999999999999999998864 445667777999999999999
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCC-----------CCCHhHHHHHHHHHHhhCCHHH
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM-----------AADVVVWGALFFACRLHGNVSI 499 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~ 499 (588)
+|...++++.+ ..+.+...+..++..+...|++++|.+.++++.. +.....+..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987 4455688899999999999999999999987620 2345688899999999999999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 500 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 9999999999999999999999999999999999999999987654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.2e-17 Score=163.10 Aligned_cols=377 Identities=11% Similarity=0.011 Sum_probs=260.2
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHh----CCChhHHHHHhccCC-CCCcccHHHHHHHHHh----CCChhHHHHHHH
Q 007818 99 YEIFGHVLKLGFDVDMYVHNAVIHVFVS----CGDLGLACNVFDESC-VRNLVSWNSLINGFVR----SGFPREAIRLFR 169 (588)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 169 (588)
...+....+. .++..+..+...|.. .+++++|...|++.. ..+..++..|...|.. .+++++|.+.|+
T Consensus 27 ~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 103 (490)
T 2xm6_A 27 LEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK 103 (490)
T ss_dssp HHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 4444444443 355666666666666 677777777776532 2355566666666666 677777777777
Q ss_pred HhHHCCCCCCcchHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHh----cCChhHHHHHHHhc
Q 007818 170 DMQLERVEPDEVTMIGMVSACAQ----LEDLNLGREIHWYISESGLTLTVPLANALMDMYVK----CGKLESAEEIFDSM 241 (588)
Q Consensus 170 ~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 241 (588)
+..+.| +...+..+...+.. .++.++|...++...+.| +...+..+...|.. .+++++|.+.|++.
T Consensus 104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 766643 34445555555555 566677777776666654 34455555555555 55566666655544
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007818 242 VNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ----AKRSKEALALFHEMQATGIKPDAVTTVH 317 (588)
Q Consensus 242 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 317 (588)
.+. .++..+..+...|.. .++.++|.+.|++..+.| +...+..
T Consensus 178 ~~~------------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 224 (490)
T 2xm6_A 178 AEQ------------------------------GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLH 224 (490)
T ss_dssp HHT------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHC------------------------------CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 221 223335555556665 677888888888877754 4445555
Q ss_pred HHHHHcc----cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh----cCChhHHHHHhccCCC-CCcchHHHHHHHH
Q 007818 318 CLSACSQ----LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK----CGNIAKALQVFHEMPE-RNSLTYTAIIGGL 388 (588)
Q Consensus 318 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~ 388 (588)
+...+.. .+++++|..+++...+.+ +...+..+..+|.. .+++++|...|++..+ .++..+..+...|
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y 301 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY 301 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555553 678888888888777654 34555666677766 7888899888888764 3566777788888
Q ss_pred Hhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC---chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 389 ALH-----GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG---LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 389 ~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
... +++++|+..|++..+.| +...+..+...+...| ++++|.++|++..+. .++..+..|...|.
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALL 374 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 777 89999999999988865 4456666776666656 788999999999874 46778888888888
Q ss_pred h----cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCCC---CCchHHHHHHHHHc
Q 007818 461 R----SGLLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERAAMKLLELDPQ---DSGIYVLLANMYRD 527 (588)
Q Consensus 461 ~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 527 (588)
. .+++++|.++|++.....++..+..+...+.. .+++++|...++++.+.+|+ ++.+...++.++..
T Consensus 375 ~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 375 QGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 8 88999999999987544567788888888887 78999999999999999854 77777777766553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=167.79 Aligned_cols=261 Identities=13% Similarity=-0.003 Sum_probs=201.6
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHh
Q 007818 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357 (588)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (588)
..+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..++
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 346667777777777777777777777653 3455666677777777777777777777776664 23556667777777
Q ss_pred HhcCChhHHHHHhccCCC--C-CcchHHH---------------HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 007818 358 AKCGNIAKALQVFHEMPE--R-NSLTYTA---------------IIGGLALHGKALDAISYFSEMIGVGLMP-DEITFLG 418 (588)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ 418 (588)
...|++++|...++++.+ | +...+.. .+..+...|++++|+..++++.+..... +..++..
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 777777777777776542 1 1111111 1333348899999999999998863211 4788999
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCC
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGN 496 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 496 (588)
+...+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++. ..| +...+..+...+...|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence 999999999999999999999874 34567889999999999999999999999873 334 67789999999999999
Q ss_pred HHHHHHHHHHHhccCCCC-----------CchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 497 VSIGERAAMKLLELDPQD-----------SGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
+++|...+++++++.|++ +.+|..++.+|...|++++|..++++..
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 999999999999999887 7899999999999999999999887543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-15 Score=156.74 Aligned_cols=413 Identities=11% Similarity=0.058 Sum_probs=292.7
Q ss_pred cHHHHHHHHHccCChhhHHHHHHHHHHhc--CCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhC
Q 007818 81 TYPLLFKVCASLGLRFLGYEIFGHVLKLG--FDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRS 158 (588)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 158 (588)
--...+++|...|.+.++.++++++.-.+ +..+....+.++....+. +..+..+..++...-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 34556778888888888888888888432 113345566666666555 4456665555544222 44567778888
Q ss_pred CChhHHHHHHHHhHHCCCCCCcchHHHHHHHHh-ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHH
Q 007818 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACA-QLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEI 237 (588)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 237 (588)
|.+++|..+|++.. .+...+..+. ..+++++|.++.+.. -++.+|..+..++...|++++|.+.
T Consensus 1063 glyEEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCHHHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 89999999988852 1112222222 667788888887754 2577888889999999999999988
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC--cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 007818 238 FDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY--VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT 315 (588)
Q Consensus 238 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 315 (588)
|.+. .|...|..++.++.+.|++++|.+.|....+.. +...+.++.+|++.++++..... .. .|+...+
T Consensus 1128 YiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~ 1198 (1630)
T 1xi4_A 1128 YIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN---GPNNAHI 1198 (1630)
T ss_pred HHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHH
Confidence 8664 667778888888999999999999887655432 22345688888888887753333 22 3566677
Q ss_pred HHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChH
Q 007818 316 VHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKAL 395 (588)
Q Consensus 316 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 395 (588)
..+...|...|++++|..+|..+ ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|...|++.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHH
Confidence 77888888999999999988764 36788888899999999999998877 45678888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc--CChHHHHHHHH
Q 007818 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS--GLLEEAEQLIR 473 (588)
Q Consensus 396 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 473 (588)
.|...... +..++..+..++..|.+.|.+++|+.+++..... . +-....|+.|..+|.+- ++..++.++|.
T Consensus 1268 LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L-e-raH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1268 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGL-E-RAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-C-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 88776553 3445666778888899999999999999888753 2 33456677777777654 46666666665
Q ss_pred hC-CCCC------CHhHHHHHHHHHHhhCCHHHHHHHHHHHhc------------cCCCCCchHHHHHHHHHccC-----
Q 007818 474 SM-PMAA------DVVVWGALFFACRLHGNVSIGERAAMKLLE------------LDPQDSGIYVLLANMYRDSN----- 529 (588)
Q Consensus 474 ~~-~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g----- 529 (588)
.- ..+| +...|..+...|.+.|+++.|.....+-.. ..+.|+..|...+..|....
T Consensus 1341 ~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~ln 1420 (1630)
T 1xi4_A 1341 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLN 1420 (1630)
T ss_pred HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHH
Confidence 43 2222 466788888889999999988844333322 24567777777777777666
Q ss_pred ----------ChHHHHHHHH
Q 007818 530 ----------MWEEAGKVRK 539 (588)
Q Consensus 530 ----------~~~~A~~~~~ 539 (588)
+++.+.+++.
T Consensus 1421 dLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1421 DLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHHHhhhcCChHHHHHHHH
Confidence 7777776666
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-16 Score=157.77 Aligned_cols=353 Identities=12% Similarity=-0.001 Sum_probs=263.6
Q ss_pred CCcccHHHHHHHHHh----CCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc----cCChhHHHHHHHHHHHhCCCCC
Q 007818 143 RNLVSWNSLINGFVR----SGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ----LEDLNLGREIHWYISESGLTLT 214 (588)
Q Consensus 143 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 214 (588)
.+..++..+...|.. .+++++|++.|++..+.| +...+..+...|.. .++.++|...++...+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 355555555555555 566666666666665543 33445555555554 556666666666655543 3
Q ss_pred hhhHHHHHHHHHh----cCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHh-
Q 007818 215 VPLANALMDMYVK----CGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQ- 289 (588)
Q Consensus 215 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~- 289 (588)
+..+..|...|.. .+++++|...|++..+. .++..+..+...|..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------------------------~~~~a~~~Lg~~y~~g 160 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ------------------------------GRDSGQQSMGDAYFEG 160 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHcC
Confidence 3444445555555 45555555555443221 223345666666766
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc----cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh---
Q 007818 290 ---AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ----LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK--- 359 (588)
Q Consensus 290 ---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 359 (588)
.++.++|++.|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+...|..
T Consensus 161 ~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g 234 (490)
T 2xm6_A 161 DGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIG 234 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 788999999999998875 56677777777776 899999999999998876 45667778888876
Q ss_pred -cCChhHHHHHhccCCC-CCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC-----Cc
Q 007818 360 -CGNIAKALQVFHEMPE-RNSLTYTAIIGGLAL----HGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG-----GL 428 (588)
Q Consensus 360 -~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~ 428 (588)
.+++++|...|++..+ .++..+..+...|.. .+++++|+..|++..+.| +...+..+...+... ++
T Consensus 235 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence 7899999999998765 466777888888887 899999999999998765 455666777777766 89
Q ss_pred hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHH
Q 007818 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG---LLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGE 501 (588)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~ 501 (588)
+++|..++++..+. .+...+..+...|...| ++++|.++|++.....++..+..+...+.. .+++++|.
T Consensus 312 ~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 387 (490)
T 2xm6_A 312 REQAISWYTKSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAA 387 (490)
T ss_dssp HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999999999875 34567788888888767 889999999988545678888889888888 89999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHc----cCChHHHHHHHHHHHhcCC
Q 007818 502 RAAMKLLELDPQDSGIYVLLANMYRD----SNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 546 (588)
..++++.+.+ ++.++..|+.+|.. .+++++|.+.|++..+.+.
T Consensus 388 ~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 388 IWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999864 58899999999998 8999999999999998774
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-15 Score=159.65 Aligned_cols=353 Identities=13% Similarity=0.087 Sum_probs=275.0
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCC--CCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHH
Q 007818 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERV--EPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANAL 221 (588)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 221 (588)
++.--...+++|...|.+.+|++++++..-.+- .-+...-+.++.+..+. +..+..++...+... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 444456678889999999999999999884321 01223444566666555 556666666555422 13457
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHH
Q 007818 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFH 301 (588)
Q Consensus 222 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 301 (588)
...+...|.+++|..+|++.... ....+.+ +-..+++++|.++.+++ ..+.+|..+..++...|++++|+..|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~-~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN-TSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH-HHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 88889999999999999997422 1112222 23788999999999877 346679999999999999999999996
Q ss_pred HHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchH
Q 007818 302 EMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381 (588)
Q Consensus 302 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 381 (588)
+. -|...|..++.++.+.|+++++.+.+....+.. +++...+.++.+|.+.+++++...+. ..++...|
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHI 1198 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHH
Confidence 53 467788899999999999999999999888765 34444456999999999999755554 35566778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (588)
..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +..+|..+..++..
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhh
Confidence 88999999999999999999984 379999999999999999999998873 45889999999999
Q ss_pred cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc--CChHHHHHHHH
Q 007818 462 SGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS--NMWEEAGKVRK 539 (588)
Q Consensus 462 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 539 (588)
.|++..|......+ ..++..+..++..|.+.|.+++|+.+++.++.++|.+...+..|+.+|.+. ++..++.++|.
T Consensus 1263 ~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999988754 345556668888899999999999999999999999999998888888764 45555555554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=157.36 Aligned_cols=300 Identities=14% Similarity=0.108 Sum_probs=112.8
Q ss_pred CchhhHHHHhhcccCCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHH
Q 007818 10 GFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVC 89 (588)
Q Consensus 10 ~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (588)
..+.+.||. +.|++++|...++++++| .+|+.++.++.+.|++++|++.|.+. +|..+|..++.++
T Consensus 6 ~~a~~~ll~-----~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~a 71 (449)
T 1b89_A 6 TSAVQVLIE-----HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAA 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHH-----HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHH
Confidence 344444543 567899999999999666 49999999999999999999999643 5777999999999
Q ss_pred HccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHH
Q 007818 90 ASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFR 169 (588)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 169 (588)
...|++++|...++...+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|.
T Consensus 72 e~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp ---------------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988888774 35678899999999999999999988864 677799999999999999999999999
Q ss_pred HhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchH
Q 007818 170 DMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSC 249 (588)
Q Consensus 170 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 249 (588)
.+ ..|..++.++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. ..+...
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l 210 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADEL 210 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHH
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhH
Confidence 76 36888888888888888888888776 267788888888888888888866655543 333334
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhCCCCCccc---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccC
Q 007818 250 TTMIVGYAKFGFLDIARKIFDDLPEKYVVP---WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326 (588)
Q Consensus 250 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 326 (588)
..++..|.+.|.+++|..+++.....+... |+-+.-.|++- ++++..+.++....+ . -...++++|.
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~---i---ni~k~~~~~~--- 280 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSR---V---NIPKVLRAAE--- 280 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTT---S---CHHHHHHHHH---
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHH---h---cCcHHHHHHH---
Confidence 445566666666666666666554433222 44444444433 222222222221111 0 1112222222
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccC
Q 007818 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEM 373 (588)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 373 (588)
+..+|..++..|...++++.|....-+-
T Consensus 281 -------------------~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 281 -------------------QAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp -------------------TTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred -------------------HHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 3566777888888888888877655443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-16 Score=156.06 Aligned_cols=211 Identities=9% Similarity=-0.035 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHhHh-------cCChh-------HHHHHhccCCC---C-CcchHHHHHHHHHhc
Q 007818 330 DGIWIHRFIEKENFNLNVVLGTALVDMYAK-------CGNIA-------KALQVFHEMPE---R-NSLTYTAIIGGLALH 391 (588)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~~ 391 (588)
.+..++++..... +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 6667787777663 3356777777777765 68877 89999988763 3 466788888999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHH-HHhcCChHHH
Q 007818 392 GKALDAISYFSEMIGVGLMPDE--ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL-LGRSGLLEEA 468 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 468 (588)
|++++|..+|+++.+. .|+. ..|..++..+.+.|++++|.++|++..+. .+.+...+...+.. +...|+.++|
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHH
Confidence 9999999999999985 5542 47888888888899999999999999863 22334444433332 3468999999
Q ss_pred HHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc----hHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 469 EQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG----IYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 469 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
.++|++. ...| +...|..++..+.+.|+.++|..+++++++..|.+|. .|..++......|+.+.+.++.+++.
T Consensus 411 ~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 411 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999976 2334 5778888888888999999999999999998877665 78888888888999999999999987
Q ss_pred hcC
Q 007818 543 ERG 545 (588)
Q Consensus 543 ~~~ 545 (588)
+.-
T Consensus 491 ~~~ 493 (530)
T 2ooe_A 491 TAF 493 (530)
T ss_dssp HHT
T ss_pred HHC
Confidence 654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-16 Score=156.90 Aligned_cols=404 Identities=9% Similarity=0.025 Sum_probs=248.5
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 007818 102 FGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP 178 (588)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 178 (588)
++..++.. |-+...|..++.. .+.|++++|..+|++. .+.+...|..++..+.+.|++++|..+|++.... .|
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p 77 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VL 77 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CC
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CC
Confidence 45555544 4577889999984 7899999999999985 3446678999999999999999999999999876 46
Q ss_pred CcchHHHHHHHH-hccCChhHHHH----HHHHHHHh-CCCC-ChhhHHHHHHHHHh---------cCChhHHHHHHHhcC
Q 007818 179 DEVTMIGMVSAC-AQLEDLNLGRE----IHWYISES-GLTL-TVPLANALMDMYVK---------CGKLESAEEIFDSMV 242 (588)
Q Consensus 179 ~~~~~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 242 (588)
+...|...+... ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++..
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 766666655433 34677777665 66666654 5544 45677777776655 688999999999886
Q ss_pred CC-Cc---chHHHHHHHH-------------HhcCCHHHHHHHhhh-------CC------CCC--------cccHHHHH
Q 007818 243 NK-TV---VSCTTMIVGY-------------AKFGFLDIARKIFDD-------LP------EKY--------VVPWNAII 284 (588)
Q Consensus 243 ~~-~~---~~~~~ll~~~-------------~~~~~~~~a~~~~~~-------~~------~~~--------~~~~~~l~ 284 (588)
+. .. ..|....... .+.+++..|..++.. +. .++ ...|...+
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred hchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 62 11 2232222211 022344555544432 11 111 01233333
Q ss_pred HHHHhc----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc-------cCChh-------HHHHHHHHHHHhC
Q 007818 285 GGYVQA----KRS----KEALALFHEMQATGIKPDAVTTVHCLSACSQ-------LGALD-------DGIWIHRFIEKEN 342 (588)
Q Consensus 285 ~~~~~~----~~~----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~ 342 (588)
...... ++. +++..+|++..... +-+...|......+.. .|+++ .|..+++...+.-
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 222221 122 35666777766642 3345555555555543 56665 6677776666521
Q ss_pred CCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--CC-c-chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007818 343 FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RN-S-LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLG 418 (588)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 418 (588)
.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|...+..+.+.|+.++|..+|++..+.. +.+...+..
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~ 395 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVT 395 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHH
Confidence 223456666777777777777777777776552 22 2 356666666667777777777777776642 222223322
Q ss_pred HHHH-hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC--HhHHHHHHHHH
Q 007818 419 ILSA-CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAAD--VVVWGALFFAC 491 (588)
Q Consensus 419 l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~--~~~~~~l~~~~ 491 (588)
.... +...|++++|..+|+...+. .+.++..|..++..+.+.|+.++|..+|+++. ..|+ ...|...+...
T Consensus 396 ~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e 473 (530)
T 2ooe_A 396 AALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 473 (530)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 2222 23467777777777777664 23346677777777777777777777777652 1221 33566666666
Q ss_pred HhhCCHHHHHHHHHHHhccCCC
Q 007818 492 RLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
...|+.+.+..+..++.+..|+
T Consensus 474 ~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 474 SNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHcCCHHHHHHHHHHHHHHCch
Confidence 6677777777777777777774
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-16 Score=147.84 Aligned_cols=240 Identities=13% Similarity=0.041 Sum_probs=177.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCC-cchHHHHHHHHhHhcC
Q 007818 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL-NVVLGTALVDMYAKCG 361 (588)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 361 (588)
+..+|...|+++.|+..++. .-+|+..++..+...+...++.+.|.+.++.+...+..| +...+..+...+...|
T Consensus 40 l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 34555556666665554433 124455556666666666666677777776666655433 3455666778889999
Q ss_pred ChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHhccCCchHHHHHHHHH
Q 007818 362 NIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF---LGILSACCHGGLVDEGRKYFAQ 438 (588)
Q Consensus 362 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~ 438 (588)
++++|.+.+++ ..+...+..++..+.+.|++++|.+.++++.+. .|+.... ..++..+...|++++|..+|++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999998 557778899999999999999999999999886 4554321 2233445567999999999999
Q ss_pred hhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHH-HHHHHHHHhccCCCCC
Q 007818 439 MSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSI-GERAAMKLLELDPQDS 515 (588)
Q Consensus 439 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~p~~~ 515 (588)
+.+. .+.+...++.++.++.+.|++++|.+.++++ ...| ++.++..++..+...|+.++ +.+++++++++.|+++
T Consensus 192 ~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 192 MADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9984 5677889999999999999999999999986 3445 67788899988889998875 6789999999999988
Q ss_pred chHHHHHHHHHccCChHHHHH
Q 007818 516 GIYVLLANMYRDSNMWEEAGK 536 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~~A~~ 536 (588)
.+.. ...+.+.++++..
T Consensus 270 ~~~d----~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 270 FIKE----YRAKENDFDRLVL 286 (291)
T ss_dssp HHHH----HHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHH
Confidence 7654 3444455555443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-17 Score=161.39 Aligned_cols=260 Identities=10% Similarity=-0.079 Sum_probs=210.4
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHH
Q 007818 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDM 356 (588)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (588)
...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+...+..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3448888888889999999999999988763 4467788888888899999999999998888775 3356778888899
Q ss_pred hHhcCChhHHHHHhccCCCC---C----------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHH
Q 007818 357 YAKCGNIAKALQVFHEMPER---N----------SLTYTAIIGGLALHGKALDAISYFSEMIGVGLM-PDEITFLGILSA 422 (588)
Q Consensus 357 ~~~~~~~~~A~~~~~~~~~~---~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~ 422 (588)
|...|++++|...++++.+. + ...+..+...+...|++++|+..++++.+.... ++..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999887632 1 223344578899999999999999999886421 157889999999
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A 500 (588)
+...|++++|...++++.+. .+.+..++..++.+|...|++++|.+.++++. ..| +...+..+..++...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999884 35568899999999999999999999999873 344 578899999999999999999
Q ss_pred HHHHHHHhccCCC------------CCchHHHHHHHHHccCChHHHHHHHHH
Q 007818 501 ERAAMKLLELDPQ------------DSGIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 501 ~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
...+++++++.|+ +..+|..++.++...|+.+.|.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998876 367899999999999999999887765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-17 Score=153.55 Aligned_cols=347 Identities=13% Similarity=0.065 Sum_probs=118.5
Q ss_pred hCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHH
Q 007818 126 SCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWY 205 (588)
Q Consensus 126 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 205 (588)
+.|++++|.+.+++...| ..|..++.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 567788888888887544 4788888888888888888888854 25666788888888888888888887766
Q ss_pred HHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHH
Q 007818 206 ISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIG 285 (588)
Q Consensus 206 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 285 (588)
..+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|.+++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 6654 33466677788888888888777766642 44456666666666666666666666654 24666666
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhH
Q 007818 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365 (588)
Q Consensus 286 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (588)
++.+.|++++|.+.++.+ .+..+|..++.+|. ..|+++.
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv-----------------------------------~~~ef~l 195 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV-----------------------------------DGKEFRL 195 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH-----------------------------------HTTCHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHH-----------------------------------HcCcHHH
Confidence 666666666666666554 13444444444444 4444444
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCC
Q 007818 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445 (588)
Q Consensus 366 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (588)
|......+. ..+.-...++..|.+.|++++|..+++...... +-....|+.+.-.+++- .+++..+.++.....-++
T Consensus 196 A~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini 272 (449)
T 1b89_A 196 AQMCGLHIV-VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI 272 (449)
T ss_dssp HHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcC
Confidence 444333332 222223345666666777777777777666443 33334455554444433 233333333332222244
Q ss_pred CC------ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchH
Q 007818 446 SP------KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518 (588)
Q Consensus 446 ~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (588)
+| +...|..++-.|...++++.|...+-+-+ ..-+...+. ....+..+.+--.+...=.++.. |..+
T Consensus 273 ~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~---~~~~kv~n~elyYkai~fyl~~~---p~~l 346 (449)
T 1b89_A 273 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFK---DIITKVANVELYYRAIQFYLEFK---PLLL 346 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHH---HHHHHCSSTHHHHHHHHHHHHHC---GGGH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHH---HHHhchhHHHHHHHHHHHHHhcC---HHHH
Confidence 44 35567777888888888888777665542 212222222 22233334332222222222222 3345
Q ss_pred HHHHHHHHccCChHHHHHHHHH
Q 007818 519 VLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
+.|..++...=+...+.+++++
T Consensus 347 ~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 347 NDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp HHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHH
Confidence 5555555444455544444443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-17 Score=155.31 Aligned_cols=260 Identities=7% Similarity=-0.067 Sum_probs=206.8
Q ss_pred cHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhH
Q 007818 279 PWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358 (588)
Q Consensus 279 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (588)
.+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 36667777778888888888888877753 3356667777777888888888888888777764 235566777788888
Q ss_pred hcCChhHHHHHhccCCCC---CcchHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 359 KCGNIAKALQVFHEMPER---NSLTYTAI--------------IG-GLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 359 ~~~~~~~A~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
..|++++|.+.++++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence 888888888888776532 22333332 22 3777889999999999998864 44678899999
Q ss_pred HHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHH
Q 007818 421 SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVS 498 (588)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~ 498 (588)
..+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++. ..| +...+..+...+...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999874 34567889999999999999999999999863 334 5778889999999999999
Q ss_pred HHHHHHHHHhccCCC------------CCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 499 IGERAAMKLLELDPQ------------DSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
+|...++++++..|. ++.++..++.++.+.|++++|.+++++..+
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999998 788999999999999999999999886543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-16 Score=158.51 Aligned_cols=370 Identities=12% Similarity=-0.046 Sum_probs=196.0
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHC-----C---CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCC----
Q 007818 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLE-----R---VEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGL---- 211 (588)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---- 211 (588)
....||.+...+...|++++|++.|++..+. + -+....+|..+...|...|++++|...++.+.+...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888888888888888888876431 1 122334677777788888888888888777665310
Q ss_pred --C-CChhhHHHHHHHHHhc--CChhHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHH
Q 007818 212 --T-LTVPLANALMDMYVKC--GKLESAEEIFDSMVN--K-TVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAI 283 (588)
Q Consensus 212 --~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 283 (588)
. ....++..+..++... +++++|...|++..+ | ++..+..+...+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~-------------------------- 183 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASY-------------------------- 183 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH--------------------------
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------------------
Confidence 1 1233444444444443 457777777776533 2 2222322222211
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----cccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC----SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (588)
.+...++.++|++.+++..+.. +.+...+..+...+ ...++.++|...++...... +.+..++..+...|..
T Consensus 184 --~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 184 --RLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp --HHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred --HhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 1222334444444444444421 11222222222221 12234444555554444432 1233334444555555
Q ss_pred cCChhHHHHHhccCCC--C-CcchHHHHHHHHH-------------------hcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 007818 360 CGNIAKALQVFHEMPE--R-NSLTYTAIIGGLA-------------------LHGKALDAISYFSEMIGVGLMPDEITFL 417 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 417 (588)
.|++++|...+++..+ | +..++..+...|. ..+.++.|...++...+.. +.+..++.
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 5555555555544432 1 2223333333322 1233567888888877653 34455777
Q ss_pred HHHHHhccCCchHHHHHHHHHhhhhcCCCCCh--HHHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHh
Q 007818 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPKL--KHYSCMVD-LLGRSGLLEEAEQLIRSM-PMAADVVVWGALFFACRL 493 (588)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~ 493 (588)
.+...+...|++++|...|+++.+. ...+.. ..+..+.. .+...|++++|++.|++. ...|+......
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~------- 410 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK------- 410 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH-------
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH-------
Confidence 8888899999999999999998864 322221 12333333 235778999999998875 45565433222
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeE
Q 007818 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 554 (588)
....+..++++.++.+|+++.+|..|+.+|...|++++|++.|++..+.+.......+|
T Consensus 411 --~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 411 --MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp --HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred --HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 23456677888899999999999999999999999999999999998876544433333
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-16 Score=152.47 Aligned_cols=286 Identities=12% Similarity=0.018 Sum_probs=174.8
Q ss_pred hCCChHHHHH-HHHHHHhcCCCCC--CcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChh
Q 007818 55 ETGKMREAVD-LYKQMLRNGGTRP--DNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLG 131 (588)
Q Consensus 55 ~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (588)
-.|++++|++ .|++........| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3467777777 7776544111112 34556677777778888888888888887754 345667777777788888888
Q ss_pred HHHHHhcc---CCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcc-hHHH---------------HHHHHhc
Q 007818 132 LACNVFDE---SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEV-TMIG---------------MVSACAQ 192 (588)
Q Consensus 132 ~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~---------------ll~~~~~ 192 (588)
+|...|++ ..+.+..++..+...+...|++++|++.|+++.... |+.. .+.. .+..+..
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 88887776 344566777788888888888888888888877653 2222 2211 1222336
Q ss_pred cCChhHHHHHHHHHHHhCCCC-ChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhh
Q 007818 193 LEDLNLGREIHWYISESGLTL-TVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDD 271 (588)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 271 (588)
.|++++|...++.+.+..... +..++..+...+...|++++|...|+++.+.+
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------- 247 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-------------------------- 247 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------------
Confidence 667777777777766653322 45566666666666666666666665542211
Q ss_pred CCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCC------
Q 007818 272 LPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL------ 345 (588)
Q Consensus 272 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------ 345 (588)
..+...|..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++.+.+.....
T Consensus 248 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 324 (368)
T 1fch_A 248 --PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 324 (368)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred --cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccc
Confidence 1223335666666777777777777777766642 3345566667777777777777777776665543221
Q ss_pred ----cchHHHHHHHHhHhcCChhHHHHHhcc
Q 007818 346 ----NVVLGTALVDMYAKCGNIAKALQVFHE 372 (588)
Q Consensus 346 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 372 (588)
...++..+..+|...|++++|..++++
T Consensus 325 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 325 GGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 145566677777777777777766653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.1e-17 Score=148.55 Aligned_cols=247 Identities=9% Similarity=0.007 Sum_probs=200.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGIKPDA--VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (588)
++-....|++..|+..++.... ..|+. .....+.+++...|+++.|+..++. .-+|+...+..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 3445678899999988876544 34543 3445677899999999999986644 23556778888999999999
Q ss_pred ChhHHHHHhccCC----CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 007818 362 NIAKALQVFHEMP----ER-NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436 (588)
Q Consensus 362 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (588)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 455677788999999999999999987 467778999999999999999999999
Q ss_pred HHhhhhcCCCCChHHH---HHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 437 AQMSSIFRLSPKLKHY---SCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 437 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
+++.+. .|+.... ..++..+...|++++|..+|+++. .+.+...+..+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999875 2553211 233444556699999999999883 34578889999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHccCChHH-HHHHHHHHHhcC
Q 007818 512 PQDSGIYVLLANMYRDSNMWEE-AGKVRKMMEERG 545 (588)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 545 (588)
|+++.++..++.++...|++++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999976 578999987754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=153.50 Aligned_cols=232 Identities=13% Similarity=-0.035 Sum_probs=194.5
Q ss_pred CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHH
Q 007818 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGG 387 (588)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~ 387 (588)
+...+..+...+.+.|++++|...++.+.+... .+...+..+..+|...|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 345588888899999999999999999988753 4678899999999999999999999998763 457789999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDE-----------ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 456 (588)
|...|++++|+..++++.+. .|+. ..+..+...+...|++++|.++++++.+.....++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3332 2233457788999999999999999998622222688999999
Q ss_pred HHHHhcCChHHHHHHHHhCC-CC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHH
Q 007818 457 DLLGRSGLLEEAEQLIRSMP-MA-ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (588)
..|...|++++|.+.++++. .. .+..+|..+..++...|++++|+..++++++..|+++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999873 33 46889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 007818 535 GKVRKMMEERG 545 (588)
Q Consensus 535 ~~~~~~~~~~~ 545 (588)
.+.++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999997753
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-14 Score=143.24 Aligned_cols=304 Identities=12% Similarity=0.021 Sum_probs=154.2
Q ss_pred CChhHHHHHHHHhHHCCCCCCc-chHHHHHHH---HhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhc----CC
Q 007818 159 GFPREAIRLFRDMQLERVEPDE-VTMIGMVSA---CAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKC----GK 230 (588)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~ 230 (588)
+++++|++.|++..+. .|+. ..+..+... +...++.++|.+.++...+.... +..++..+...+... |+
T Consensus 152 ~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~ 228 (472)
T 4g1t_A 152 NQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEE 228 (472)
T ss_dssp THHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC-----
T ss_pred ccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhH
Confidence 4567777777776654 3332 223222222 23345556666666666655322 334444444333332 33
Q ss_pred hhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007818 231 LESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKP 310 (588)
Q Consensus 231 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 310 (588)
+++|.+.+++.... ...+...+..+...|...|++++|...+++..+.. +-
T Consensus 229 ~~~a~~~~~~al~~----------------------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 279 (472)
T 4g1t_A 229 EGEGEKLVEEALEK----------------------------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PN 279 (472)
T ss_dssp -CHHHHHHHHHHHH----------------------------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHHHHHh----------------------------CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CC
Confidence 44444444433111 12233346677788888889999999999888753 22
Q ss_pred CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCC---CCCcchHHHHHHH
Q 007818 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMP---ERNSLTYTAIIGG 387 (588)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~ 387 (588)
+..++..+..++...+.. ..... . ..........+.++.|...++... ..+..++..+...
T Consensus 280 ~~~~~~~lg~~y~~~~~~---------~~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~ 343 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQ---------VMNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASL 343 (472)
T ss_dssp CHHHHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH---------hhhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHH
Confidence 344444444443211000 00000 0 000011111223566777776654 3466788999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEI--TFLGILS-ACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (588)
+...|++++|+..|++..+....|... .+..+.. .....|++++|+..|++..+. .|+........
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~~-------- 412 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKMK-------- 412 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHHH--------
T ss_pred HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHH--------
Confidence 999999999999999998864333221 2222222 245789999999999998863 45433322222
Q ss_pred hHHHHHHHHhC-CC-CCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007818 465 LEEAEQLIRSM-PM-AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522 (588)
Q Consensus 465 ~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (588)
..+.++++.. .. +.++.+|..+...+...|++++|+..++++++++|.+|.+...+|
T Consensus 413 -~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 413 -DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 2233333332 22 336778999999999999999999999999999999888776655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.3e-16 Score=135.75 Aligned_cols=196 Identities=13% Similarity=0.007 Sum_probs=155.3
Q ss_pred CCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007818 344 NLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGIL 420 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 420 (588)
+++...+..+...+.+.|++++|...|++..+ .+...+..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 35666777888888999999999999988664 356678888899999999999999999988863 44566788888
Q ss_pred HHhccC-----------CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhHHHHHH
Q 007818 421 SACCHG-----------GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALF 488 (588)
Q Consensus 421 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 488 (588)
.++... |++++|+..+++..+. .+.+...+..+..+|...|++++|++.|+++. ...+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999999974 24457888999999999999999999999872 126788899999
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
.++...|++++|+..++++++..|+++.++..++.++.+.|++++|++.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.2e-15 Score=136.33 Aligned_cols=218 Identities=11% Similarity=-0.029 Sum_probs=159.0
Q ss_pred HHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--C-C-------cchHHHH
Q 007818 315 TVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--R-N-------SLTYTAI 384 (588)
Q Consensus 315 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-------~~~~~~l 384 (588)
+..+...+...|++++|...++.+.+.. .+...+..+..++...|++++|...+++..+ | + ..+|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444444455555555555444444 3444555555555555555555555555442 1 1 3567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC
Q 007818 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (588)
...+...|++++|+..+++..+. .|+.. .+...|++++|...++.+.. ..+.+...+..++..+...|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888774 45533 34556788899999998886 333456778888899999999
Q ss_pred hHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH
Q 007818 465 LEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME 542 (588)
Q Consensus 465 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 542 (588)
+++|.+.++++. .+.+...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|.+.++++.
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999998873 233677888888899999999999999999999999999999999999999999999999999987
Q ss_pred hcC
Q 007818 543 ERG 545 (588)
Q Consensus 543 ~~~ 545 (588)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 653
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-14 Score=135.71 Aligned_cols=278 Identities=11% Similarity=-0.025 Sum_probs=169.8
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHH
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVI 121 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (588)
+...+..+...+...|++++|+..|+++.+. .+.+...+..+..++...|++++|...++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 4456677777888888888888888887762 22344566667777777888888888888877754 23445555556
Q ss_pred HHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHH-HH-HHhccCCh
Q 007818 122 HVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM-VS-ACAQLEDL 196 (588)
Q Consensus 122 ~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~-~~~~~~~~ 196 (588)
..+...|++++|...+++. .+.+...+..+... .|+......+ .. .+...|++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 6666666666666555542 11122222221000 0011111111 11 25666777
Q ss_pred hHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC
Q 007818 197 NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY 276 (588)
Q Consensus 197 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 276 (588)
++|...++.+.+.... +...+..+...+...|++++|.+.++++.+.+ ..+
T Consensus 155 ~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----------------------------~~~ 205 (327)
T 3cv0_A 155 RECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR----------------------------PDD 205 (327)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------TTC
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------------CCc
Confidence 7777777777766433 56667777777777777777777776653211 112
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCC-----------
Q 007818 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL----------- 345 (588)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------- 345 (588)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.....
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 284 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhc
Confidence 2335556666777777777777777776643 3345666777777777777777777777776654332
Q ss_pred cchHHHHHHHHhHhcCChhHHHHHhccCC
Q 007818 346 NVVLGTALVDMYAKCGNIAKALQVFHEMP 374 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 374 (588)
+...+..+..++...|++++|..+++...
T Consensus 285 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 285 TRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45667778888888888888888887654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-15 Score=136.01 Aligned_cols=235 Identities=11% Similarity=-0.032 Sum_probs=193.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCC--c----chHHHHH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL--N----VVLGTAL 353 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~l 353 (588)
|..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|...++.+.+..... + ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 6667788888999999999999988876 777888888888999999999999998887654321 1 5678888
Q ss_pred HHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHH
Q 007818 354 VDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 433 (588)
...+...|++++|...|++..+.++. ...+...|++++|...++++.... +.+...+..+...+...|++++|.
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999999887642222 345677788999999999998853 334557888889999999999999
Q ss_pred HHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
..++++.+. .+.+...+..++..|...|++++|.+.++++. ..| +...+..+...+...|++++|...+++++++.
T Consensus 160 ~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 160 KAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999884 34568889999999999999999999999873 334 57788899999999999999999999999999
Q ss_pred ------CCCCchHHHHHHH
Q 007818 512 ------PQDSGIYVLLANM 524 (588)
Q Consensus 512 ------p~~~~~~~~l~~~ 524 (588)
|++..++..+..+
T Consensus 238 ~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 238 AEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHTTTTHHHHHHHHHHT
T ss_pred hhhcCCCchHHHHHHHHHh
Confidence 8777777766554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-14 Score=131.34 Aligned_cols=246 Identities=12% Similarity=0.007 Sum_probs=161.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc--hHHHHHHHHh
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV--VLGTALVDMY 357 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~ 357 (588)
+......+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++.+.+.+..++. ..+..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 4445566667777777777777776642 223335666666677777777777777766663322221 2356677777
Q ss_pred HhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHH
Q 007818 358 AKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRK 434 (588)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 434 (588)
...|++++|...|++..+ .+..+|..+...|...|++++|+..+++..+.. +.+...+..+...+...+++++|.+
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776652 345677777777888888888888887777652 3344556556523334458888888
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHHHHhcCC---hHHHHHHHHhCC----CCCC------HhHHHHHHHHHHhhCCHHHHH
Q 007818 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGL---LEEAEQLIRSMP----MAAD------VVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~----~~~~------~~~~~~l~~~~~~~~~~~~A~ 501 (588)
.++++.+. .+.+...+..+...+...|+ +++|...++++. ..|+ ...+..+...+...|++++|.
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888764 23446677777777777777 666777776652 1233 246667777888899999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 502 RAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
..++++++++|+++.++..+.......+
T Consensus 242 ~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999888888877665544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.5e-14 Score=137.43 Aligned_cols=381 Identities=10% Similarity=0.003 Sum_probs=208.5
Q ss_pred HHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCh---hHHHHHhccCCCCCcccHHHHHHHHHhCC--
Q 007818 85 LFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDL---GLACNVFDESCVRNLVSWNSLINGFVRSG-- 159 (588)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-- 159 (588)
+...+.+.|++++|...|+++.+.|. ...+..|...|...|+. ++|..+|++..+.++..+..+...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 45556677788888888888777652 23333444555556666 78888887755556667777766555544
Q ss_pred ---ChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChh---HHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhH
Q 007818 160 ---FPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN---LGREIHWYISESGLTLTVPLANALMDMYVKCGKLES 233 (588)
Q Consensus 160 ---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 233 (588)
++++|++.|++..+.|. ...+..+...|...+..+ .+.+.+......| ++.....+...|...+.+++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 67788888888877652 225556666665544433 3344444444333 23445556666666655443
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCC
Q 007818 234 AEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAK---RSKEALALFHEMQATGIKP 310 (588)
Q Consensus 234 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p 310 (588)
+. +.+..+++.....++..+..+...|...| +.++|++.|+...+.| .+
T Consensus 160 ~~---------------------------~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~ 211 (452)
T 3e4b_A 160 HL---------------------------DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TV 211 (452)
T ss_dssp GH---------------------------HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CS
T ss_pred CH---------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CH
Confidence 32 22233333333344445555666666666 6677777777776665 33
Q ss_pred CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHH-H-
Q 007818 311 DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGG-L- 388 (588)
Q Consensus 311 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~-~- 388 (588)
+...+..+...|... ....+++++|...|++....++..+..+... +
T Consensus 212 ~a~~~~~Lg~~y~~g-------------------------------~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 212 TAQRVDSVARVLGDA-------------------------------TLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYD 260 (452)
T ss_dssp CHHHHHHHHHHHTCG-------------------------------GGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-------------------------------CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 333333333333222 0011445555555555442244455555554 3
Q ss_pred -HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC-----chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh-
Q 007818 389 -ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG-----LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR- 461 (588)
Q Consensus 389 -~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 461 (588)
...+++++|+..|++..+.| +...+..+...|. .| ++++|.++|++.. +-++.....|...|..
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRG 331 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCC
Confidence 34677788888888777765 4555555555555 34 7888888888776 2356667777777765
Q ss_pred ---cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHH--HccCChH
Q 007818 462 ---SGLLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERAAMKLLELDPQDSGIYVLLANMY--RDSNMWE 532 (588)
Q Consensus 462 ---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~ 532 (588)
..++++|.++|++.....+......+...|.. .++.++|...++++.+.++.+ +...+..+. ...++.+
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~ 409 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRA 409 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHH
Confidence 33888888888877544445555666666653 458889999999998877643 344444443 3345777
Q ss_pred HHHHHHHHHHhc
Q 007818 533 EAGKVRKMMEER 544 (588)
Q Consensus 533 ~A~~~~~~~~~~ 544 (588)
+|.++.++..+.
T Consensus 410 ~a~~~~~~~~~~ 421 (452)
T 3e4b_A 410 EGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888887777554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.8e-14 Score=139.22 Aligned_cols=302 Identities=13% Similarity=0.023 Sum_probs=196.5
Q ss_pred hHHHHHHHhcCCCCcchHHHHHHHHHhcC-----CHHHHHHHhhhCCCC-CcccHHHHHHHHHhcCCh---HHHHHHHHH
Q 007818 232 ESAEEIFDSMVNKTVVSCTTMIVGYAKFG-----FLDIARKIFDDLPEK-YVVPWNAIIGGYVQAKRS---KEALALFHE 302 (588)
Q Consensus 232 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~---~~a~~~~~~ 302 (588)
++|...|++..+.++..+..+...+...+ +.++|...|+...++ +...+..|...|...+.. ..+.+.+..
T Consensus 55 ~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~ 134 (452)
T 3e4b_A 55 KQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQ 134 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 44444444443333333333433233222 444555555544332 233466666666654433 335555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC---ChhHHHHHhccCCCC---
Q 007818 303 MQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG---NIAKALQVFHEMPER--- 376 (588)
Q Consensus 303 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~--- 376 (588)
....|. ......+...+...+.++.+......+.+.-...++..+..+..+|...| ++++|.+.|+...+.
T Consensus 135 a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~ 211 (452)
T 3e4b_A 135 WQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV 211 (452)
T ss_dssp HHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH
Confidence 555542 33455556666666666665555444443333344557788888888899 889999999887643
Q ss_pred CcchHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-h--ccCCchHHHHHHHHHhhhhcCCCCCh
Q 007818 377 NSLTYTAIIGGLALH----GKALDAISYFSEMIGVGLMPDEITFLGILSA-C--CHGGLVDEGRKYFAQMSSIFRLSPKL 449 (588)
Q Consensus 377 ~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~ 449 (588)
+...+..+...|... +++++|+..|++.. .| +...+..+... + ...+++++|.++|++..+. + +.
T Consensus 212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~ 283 (452)
T 3e4b_A 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QP 283 (452)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CH
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CH
Confidence 223336677777554 78999999999987 33 44455555555 3 5689999999999999875 3 67
Q ss_pred HHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 450 KHYSCMVDLLGRSG-----LLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 450 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
..+..|...|. .| ++++|.++|++.. ..++.....+...|.. ..++++|...++++.+. .++.+...
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~ 359 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFA 359 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHH
Confidence 77888888887 55 9999999999998 6678888888877765 34999999999999874 46788999
Q ss_pred HHHHHHc----cCChHHHHHHHHHHHhcCCcc
Q 007818 521 LANMYRD----SNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 521 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 548 (588)
|+.+|.. ..+.++|...++...+.|.+.
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~ 391 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE 391 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 9999985 459999999999999888643
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.7e-14 Score=130.62 Aligned_cols=241 Identities=9% Similarity=-0.125 Sum_probs=188.7
Q ss_pred hcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhH
Q 007818 289 QAKRSKEALALFHEMQATGIK---PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365 (588)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (588)
..|++++|+..++++.+.... .+..++..+...+...|++++|...++.+.+... .+...+..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 456788999999988876321 1355677788888899999999999988888753 356788889999999999999
Q ss_pred HHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhh
Q 007818 366 ALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442 (588)
Q Consensus 366 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 442 (588)
|...|+++.+ .+..++..+...+...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988763 36778999999999999999999999999885 455555555555667779999999999888874
Q ss_pred cCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCC-CCC-----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 443 FRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPM-AAD-----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
.+++...+ .++..+...++.++|.+.+++... .|. ...+..+...+...|++++|...++++++..|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 34444444 477778888899999999988642 232 567888888999999999999999999999997754
Q ss_pred hHHHHHHHHHccCChHHHHHHH
Q 007818 517 IYVLLANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~ 538 (588)
. .+.++...|++++|++.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 466788899999998876
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-16 Score=159.15 Aligned_cols=147 Identities=12% Similarity=0.112 Sum_probs=122.7
Q ss_pred CchhhHHHHhhcccCCCChhhHHhhcccCC-------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccH
Q 007818 10 GFAPSRLIAFCAISESKNLDYCTKILFNVQ-------NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTY 82 (588)
Q Consensus 10 ~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 82 (588)
..+||+||.+|+ +.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.. .|+.||..||
T Consensus 127 ~~TynaLIdglc--K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-~G~~PDvvTY 203 (1134)
T 3spa_A 127 QQRLLAFFKCCL--LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-AGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHH--HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHH
T ss_pred HHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCcHHHH
Confidence 357999999999 9999999999997643 79999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHccCCh-hhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCC-----CcccHHHHHHHHH
Q 007818 83 PLLFKVCASLGLR-FLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVR-----NLVSWNSLINGFV 156 (588)
Q Consensus 83 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~ 156 (588)
+++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++...++..+..++ ...+...|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999998877766555555554443221 2334444555555
Q ss_pred hCC
Q 007818 157 RSG 159 (588)
Q Consensus 157 ~~~ 159 (588)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-13 Score=124.36 Aligned_cols=219 Identities=11% Similarity=-0.052 Sum_probs=149.0
Q ss_pred HHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh----cCChhHHHHHhccCCC-CCcchHHHHHHHHHh-
Q 007818 317 HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK----CGNIAKALQVFHEMPE-RNSLTYTAIIGGLAL- 390 (588)
Q Consensus 317 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~- 390 (588)
.+...+...|++++|...++...+.+ +...+..+...|.. .+++++|...|++..+ .++..+..+...|..
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g 87 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSG 87 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence 33333444444444444444444321 22334444555555 5555555555555442 244556666666666
Q ss_pred ---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh--
Q 007818 391 ---HGKALDAISYFSEMIGVGLMPDEITFLGILSACCH----GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR-- 461 (588)
Q Consensus 391 ---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-- 461 (588)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+. + +...+..+...|..
T Consensus 88 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 88 QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGR 160 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTS
T ss_pred CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCC
Confidence 777778888887777754 56677777777777 78888888888888774 3 45667777777777
Q ss_pred --cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc----cCCh
Q 007818 462 --SGLLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD----SNMW 531 (588)
Q Consensus 462 --~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~ 531 (588)
.+++++|.+.+++.....+...+..+...+.. .+++++|+..++++++.+| +.++..++.+|.. .|++
T Consensus 161 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~ 238 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNE 238 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCH
Confidence 78888888888876433456677777777878 8888999999998888866 6788888999988 8899
Q ss_pred HHHHHHHHHHHhcCCc
Q 007818 532 EEAGKVRKMMEERGVE 547 (588)
Q Consensus 532 ~~A~~~~~~~~~~~~~ 547 (588)
++|.+.+++..+.+.+
T Consensus 239 ~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 239 KQAIENFKKGCKLGAK 254 (273)
T ss_dssp TTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHcCCH
Confidence 9999999988877643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=124.89 Aligned_cols=197 Identities=9% Similarity=-0.080 Sum_probs=149.7
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 34455666667777777777777766542 345567777778888888888888888877753 34566777788888
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHH
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSP-KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A 500 (588)
...|++++|.++++++.+. +..| +...+..++..|...|++++|.+.++++. ..| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888762 2344 45677778888888888888888888762 233 567777888888888888888
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...++++++..|+++..+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 888888888888888888888888888899999988888887654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-15 Score=155.77 Aligned_cols=124 Identities=14% Similarity=0.139 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccC-------CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHH
Q 007818 114 MYVHNAVIHVFVSCGDLGLACNVFDES-------CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM 186 (588)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 186 (588)
..+|+++|++|++.|++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 458999999999999999999999653 5789999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCh-hHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 187 VSACAQLEDL-NLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 187 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
|.++++.|+. +.|.+++++|.+.|+.||..+|+.++..+.+.+ .++.++++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv 258 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV 258 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh
Confidence 9999999985 788999999999999999999998887665543 44444444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=118.06 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=145.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHH
Q 007818 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456 (588)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 456 (588)
++..|..+...|...|++++|+..|++..+.. +-+..++..+..++.+.|++++|...+..+... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45678889999999999999999999988863 345678888999999999999999999999874 345577788888
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHH
Q 007818 457 DLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (588)
..+...++++.|.+.+++.. ..| +...+..+...+...|++++|+..++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 89999999999999998863 334 6778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC
Q 007818 535 GKVRKMMEERG 545 (588)
Q Consensus 535 ~~~~~~~~~~~ 545 (588)
++.++++.+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999998764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-14 Score=128.15 Aligned_cols=197 Identities=11% Similarity=0.102 Sum_probs=140.2
Q ss_pred cchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007818 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 422 (588)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345556666777777888877777776643 345677777788888888888888888887753 4456677788888
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHhHHHHHHHHHHhhCCHHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-M-AADVVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A 500 (588)
+...|++++|.+.++++.+. .+.+...+..++..+...|++++|.+.++++. . +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888774 34567778888888888888888888888763 2 23567777888888888889999
Q ss_pred HHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 501 ERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999888888888888888999999999999999988887654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-13 Score=125.64 Aligned_cols=229 Identities=10% Similarity=-0.039 Sum_probs=188.1
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--CCcc----hHHHHHHH
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--RNSL----TYTAIIGG 387 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~l~~~ 387 (588)
.+......+...|+++.|...++.+.+... .+...+..+..+|...|++++|...+++..+ ++.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 455667778899999999999999988753 3555788899999999999999999988764 3333 38899999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
+...|++++|+..+++..+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..+...+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998864 445678999999999999999999999999873 44557778888834445569999
Q ss_pred HHHHHHhCC-CCC-CHhHHHHHHHHHHhhCC---HHHHHHHHHHHhccC---CCC-----CchHHHHHHHHHccCChHHH
Q 007818 468 AEQLIRSMP-MAA-DVVVWGALFFACRLHGN---VSIGERAAMKLLELD---PQD-----SGIYVLLANMYRDSNMWEEA 534 (588)
Q Consensus 468 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A 534 (588)
|.+.++++. ..| +...+..+...+...|+ +++|...++++++.. |+. ..++..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999873 334 46777788888888888 888999999998876 432 25788899999999999999
Q ss_pred HHHHHHHHhcCC
Q 007818 535 GKVRKMMEERGV 546 (588)
Q Consensus 535 ~~~~~~~~~~~~ 546 (588)
.+.++++.+...
T Consensus 241 ~~~~~~al~~~p 252 (272)
T 3u4t_A 241 DAAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHhcCc
Confidence 999999987653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-13 Score=120.54 Aligned_cols=197 Identities=11% Similarity=-0.015 Sum_probs=147.9
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
...+..+...+...|++++|.+.++++.+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34455566666666777777766665542 245567777777888888888888888877653 44566777788888
Q ss_pred ccC-CchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHH
Q 007818 424 CHG-GLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSI 499 (588)
Q Consensus 424 ~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 499 (588)
... |++++|...++++.+. +..|+ ...+..++..+...|++++|.+.++++. ..| +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 888 8888888888888762 23333 5677788888888888888888888762 233 46777888888888899999
Q ss_pred HHHHHHHHhccCC-CCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 500 GERAAMKLLELDP-QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 500 A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|...++++++..| +++..+..++..+...|+.++|..+++.+.+..
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 9999999988888 888888888888888899999988888886543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-13 Score=128.61 Aligned_cols=243 Identities=9% Similarity=0.040 Sum_probs=191.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhCCCCcchHHHHHHHHhH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGA-LDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (588)
|..+...+...|++++|++.+++++... +-+...|..+..++...|+ +++|+..++.+.+.... +...|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 6777778888899999999999988853 3356667778888888886 99999999888887533 6677888888899
Q ss_pred hcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-CCchHHH--
Q 007818 359 KCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCH-GGLVDEG-- 432 (588)
Q Consensus 359 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a-- 432 (588)
..|++++|...|+++.+ .+..+|..+..++...|++++|+..++++++.. +-+...|..+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 99999999999988763 466788888889999999999999999998864 3456788888888887 5665777
Q ss_pred ---HHHHHHhhhhcCCCCChHHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHhHHHHHHHHHHhhC--------C-H
Q 007818 433 ---RKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG--LLEEAEQLIRSMPMAA-DVVVWGALFFACRLHG--------N-V 497 (588)
Q Consensus 433 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~--------~-~ 497 (588)
+..++++... .+-+...|..+..++...| ++++|.+.+.++...| +...+..++..+.+.| + +
T Consensus 257 ~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 257 EREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 4778888763 2445778888888888888 6889998888875445 4567777777777763 2 5
Q ss_pred HHHHHHHHHH-hccCCCCCchHHHHHHHHHc
Q 007818 498 SIGERAAMKL-LELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 498 ~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 527 (588)
++|+.+++++ .+++|.....|..++..+..
T Consensus 335 ~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 335 NKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 8899999999 89999888888888876654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.5e-14 Score=126.76 Aligned_cols=180 Identities=10% Similarity=0.072 Sum_probs=134.4
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
...+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33444455555555555555555555432 245566777778888888888888888887753 44667788888889
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHhHHHHHHHHHHhhCCHHHHH
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-M-AADVVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~ 501 (588)
...|++++|...++++.+. .+.+...+..++..+.+.|++++|.+.++++. . +.+...+..+...+...|++++|.
T Consensus 136 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 136 VKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 9999999999999998874 34567788889999999999999999998763 2 335778888999999999999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 502 RAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
..++++++..|+++.++..++.+....|
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 9999999999999888887776554433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=9.5e-13 Score=119.38 Aligned_cols=204 Identities=13% Similarity=0.012 Sum_probs=150.7
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHh
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLAL 390 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 390 (588)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+ .+...+..+...+..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 34444555555666666666665555543 22345566666667777777777777766542 345667778888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHH
Q 007818 391 HGKALDAISYFSEMIGVGLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAE 469 (588)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 469 (588)
.|++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..++..|...|++++|.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 8889999998888877333453 457777888889999999999999998874 2445788888999999999999999
Q ss_pred HHHHhCC-CC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 470 QLIRSMP-MA-ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 470 ~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
+.++++. .. .+...+..+...+...|++++|...++++++..|+++.....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9998863 33 456677888888899999999999999999999988765543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-12 Score=119.95 Aligned_cols=225 Identities=11% Similarity=-0.064 Sum_probs=183.9
Q ss_pred cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc----cCChhHHHHHHHHHHHhCCCCcchHHHH
Q 007818 277 VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ----LGALDDGIWIHRFIEKENFNLNVVLGTA 352 (588)
Q Consensus 277 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 352 (588)
+..+..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...+++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344666777788888888888888888873 345566677777777 888999999998888776 5677778
Q ss_pred HHHHhHh----cCChhHHHHHhccCCC-CCcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 353 LVDMYAK----CGNIAKALQVFHEMPE-RNSLTYTAIIGGLAL----HGKALDAISYFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 353 l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
+...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 8888888 8999999999887764 366778888888988 999999999999999865 566777777777
Q ss_pred cc----CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHh--
Q 007818 424 CH----GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR----SGLLEEAEQLIRSMPMAADVVVWGALFFACRL-- 493 (588)
Q Consensus 424 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-- 493 (588)
.. .+++++|...+++..+. .+...+..+...|.. .+++++|.+.+++.....+...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 77 89999999999999875 356778889999999 99999999999987433347778888888888
Q ss_pred --hCCHHHHHHHHHHHhccCCCC
Q 007818 494 --HGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 494 --~~~~~~A~~~~~~~~~~~p~~ 514 (588)
.+++++|...++++++.+|++
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999999854
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-13 Score=118.69 Aligned_cols=194 Identities=13% Similarity=-0.004 Sum_probs=117.6
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC-cccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHH
Q 007818 41 PNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD-NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119 (588)
Q Consensus 41 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (588)
++...+..+...+.+.|++++|+..|++..+ ..|+ ...+..+..++.+.|++++|...++++.+.. |.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK---ENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 4555666667777777777777777777665 3333 4456666666667777777777777777654 234556666
Q ss_pred HHHHHHhC-----------CChhHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHH
Q 007818 120 VIHVFVSC-----------GDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIG 185 (588)
Q Consensus 120 l~~~~~~~-----------~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 185 (588)
+..++... |++++|+..|++. .+.+...|..+...+...|++++|+..|++..+.. .+...+..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 66666666 6666666666652 33455666666677777777777777777776655 45566666
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhc
Q 007818 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSM 241 (588)
Q Consensus 186 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 241 (588)
+..++...|++++|...++.+.+..+. +...+..+..++...|++++|...|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777777766332 5566666777777777777777766654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=4.7e-13 Score=123.18 Aligned_cols=157 Identities=15% Similarity=0.006 Sum_probs=71.5
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccC---CCCCcccHHHHHHHHHhC
Q 007818 82 YPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDES---CVRNLVSWNSLINGFVRS 158 (588)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~ 158 (588)
+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...|++. .+.+...|..+...+...
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~ 124 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 124 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence 3344444444444444444444444432 123344444444444444444444444431 223344455555555555
Q ss_pred CChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 007818 159 GFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIF 238 (588)
Q Consensus 159 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 238 (588)
|++++|.+.|+++.+. .|+.......+..+...|+.++|...+........ ++...+ .++..+...++.++|...+
T Consensus 125 g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~ 200 (275)
T 1xnf_A 125 GRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERL 200 (275)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHH
Confidence 5555555555555543 23333333333333444555555555555544421 122222 2444445555555555555
Q ss_pred HhcCC
Q 007818 239 DSMVN 243 (588)
Q Consensus 239 ~~~~~ 243 (588)
....+
T Consensus 201 ~~~~~ 205 (275)
T 1xnf_A 201 KADAT 205 (275)
T ss_dssp HHHCC
T ss_pred HHHhc
Confidence 55544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-13 Score=128.33 Aligned_cols=227 Identities=10% Similarity=0.047 Sum_probs=192.0
Q ss_pred HHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCC-hhHHHHHhccCCC---CCcchHHHHHHHH
Q 007818 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGN-IAKALQVFHEMPE---RNSLTYTAIIGGL 388 (588)
Q Consensus 313 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~~ 388 (588)
..+..+..++...|++++|+..++.+.+... -+...|..+..++...|+ +++|+..|+++.+ .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4566677778889999999999999998753 356778889999999997 9999999999874 4667899999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh-cCChHH
Q 007818 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR-SGLLEE 467 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 467 (588)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..++++.+. .+.+...|+.+..+|.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999864 446778999999999999999999999999984 34568899999999999 666577
Q ss_pred H-----HHHHHhC-CCCC-CHhHHHHHHHHHHhhC--CHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC---------
Q 007818 468 A-----EQLIRSM-PMAA-DVVVWGALFFACRLHG--NVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN--------- 529 (588)
Q Consensus 468 A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 529 (588)
| ++.++++ ...| +...|..+...+...| ++++|+..+.++ +..|+++.++..++++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4777765 3455 5778888888888877 689999999998 999999999999999999875
Q ss_pred ChHHHHHHHHHH-Hhc
Q 007818 530 MWEEAGKVRKMM-EER 544 (588)
Q Consensus 530 ~~~~A~~~~~~~-~~~ 544 (588)
.+++|+++++++ .+.
T Consensus 333 ~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 333 ILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 359999999998 554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.4e-11 Score=121.29 Aligned_cols=433 Identities=11% Similarity=0.045 Sum_probs=274.4
Q ss_pred hHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCC---hhHHHH
Q 007818 59 MREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGD---LGLACN 135 (588)
Q Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~ 135 (588)
..+.+..|++.... -+-|..+|..++..+.+.+.++.+..+++++... +|.....|...+..-.+.+. ++.+..
T Consensus 48 ~~d~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 48 ESDVIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CSCHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34445455555442 3456778888888888888888888899888875 46677788888888778888 888888
Q ss_pred HhccCC-----CCCcccHHHHHHHHHhCCCh--------hHHHHHHHHhHH-CCC-CCCc-chHHHHHHHHhc-------
Q 007818 136 VFDESC-----VRNLVSWNSLINGFVRSGFP--------REAIRLFRDMQL-ERV-EPDE-VTMIGMVSACAQ------- 192 (588)
Q Consensus 136 ~~~~~~-----~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~~-~~~~~ll~~~~~------- 192 (588)
+|++.. +|++..|...+....+.++. +.+.++|+.... .|. .|+. ..|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 888732 26777777777666555543 234466666543 355 4543 344444443321
Q ss_pred --cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhh
Q 007818 193 --LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFD 270 (588)
Q Consensus 193 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 270 (588)
.++.+.+..+|+.++......-..+|......-...+. ..+.+++.+. ...++.|...+.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~-----------------~~~y~~Ar~~~~ 266 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL-----------------SAQYMNARSLYQ 266 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh-----------------hHHHHHHHHHHH
Confidence 23456677777777642111112233222221111111 1122221110 001111222221
Q ss_pred -------hCCC---C-------------C------cccHHHHHHHHHhcC-------ChHHHHHHHHHHHHCCCCCCHHH
Q 007818 271 -------DLPE---K-------------Y------VVPWNAIIGGYVQAK-------RSKEALALFHEMQATGIKPDAVT 314 (588)
Q Consensus 271 -------~~~~---~-------------~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~p~~~~ 314 (588)
.+.. . + ...|...+..--..+ ..+++..+|++.... ++-+...
T Consensus 267 e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~l 345 (679)
T 4e6h_A 267 DWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEI 345 (679)
T ss_dssp HHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHH
T ss_pred HHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHH
Confidence 1111 0 0 011444444333322 124566778888775 3446667
Q ss_pred HHHHHHHHcccCChhHHH-HHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC-------------CC---
Q 007818 315 TVHCLSACSQLGALDDGI-WIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE-------------RN--- 377 (588)
Q Consensus 315 ~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------~~--- 377 (588)
|...+.-+...|+.+.|. .+++...... +.+..++-..+....+.|+++.|.++|+.+.+ |+
T Consensus 346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 346 WFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 777777777888888996 9999888653 34566677788888899999999999988763 21
Q ss_pred ---------cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC-CchHHHHHHHHHhhhhcCCCC
Q 007818 378 ---------SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG-GLVDEGRKYFAQMSSIFRLSP 447 (588)
Q Consensus 378 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~ 447 (588)
...|...+....+.|+.+.|..+|...++.-..+....|...+..-.+. ++.+.|..+|+...+. .+.
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~ 502 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTT
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCC
Confidence 2357777888888899999999999998861122344454443333333 5699999999999985 445
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCCC-CC----CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPM-AA----DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
+...+...++.....|+.+.|+.+|++... .| ....|...+.--.+.|+.+.+..+.+++.+..|+++.
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 667778889988899999999999998742 23 2456777777778899999999999999999997653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=135.18 Aligned_cols=264 Identities=13% Similarity=0.003 Sum_probs=191.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHcccCChhHHHHHHHHHHHh----C-CCCcchHH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDA----VTTVHCLSACSQLGALDDGIWIHRFIEKE----N-FNLNVVLG 350 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~ 350 (588)
+..+...+...|++++|...|+++.+.+ +.+. ..+..+...+...|+++.|...+++..+. + .......+
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3445566777788888888888877753 1122 35666777777888888888887766543 1 11234556
Q ss_pred HHHHHHhHhcCChhHHHHHhccCCCC---------CcchHHHHHHHHHhcCC-----------------hHHHHHHHHHH
Q 007818 351 TALVDMYAKCGNIAKALQVFHEMPER---------NSLTYTAIIGGLALHGK-----------------ALDAISYFSEM 404 (588)
Q Consensus 351 ~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~~ 404 (588)
..+...|...|++++|...+++..+- ...++..+...|...|+ +++|+..+++.
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 77778888888888888888776521 23467778888888888 88888888776
Q ss_pred HHC----CCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 405 IGV----GLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 405 ~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
.+. +..| ...++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.+.+++.
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 542 1111 1236777888899999999999999988764211112 236788899999999999999999876
Q ss_pred C-----CC---CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 476 P-----MA---ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD------SGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 476 ~-----~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
. .. .....+..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+++++.
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 2 11 124577788888999999999999999998876542 347889999999999999999999998
Q ss_pred Hhc
Q 007818 542 EER 544 (588)
Q Consensus 542 ~~~ 544 (588)
.+.
T Consensus 370 l~~ 372 (411)
T 4a1s_A 370 LQL 372 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-12 Score=114.49 Aligned_cols=205 Identities=11% Similarity=0.017 Sum_probs=145.3
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHh
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLAL 390 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~ 390 (588)
.+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+ .+..++..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444444455555555555555544442 12344555566666666666666666665542 345567777888888
Q ss_pred c-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHH
Q 007818 391 H-GKALDAISYFSEMIGVGLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468 (588)
Q Consensus 391 ~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 468 (588)
. |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..++..+...|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 8 888888888888887333344 457778888889999999999999998874 344577888899999999999999
Q ss_pred HHHHHhCC-CC--CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007818 469 EQLIRSMP-MA--ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521 (588)
Q Consensus 469 ~~~~~~~~-~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (588)
.+.++++. .. .+...+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99998762 22 3566666666677889999999999999999999887766554
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-13 Score=131.97 Aligned_cols=262 Identities=13% Similarity=0.053 Sum_probs=144.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHcccCChhHHHHHHHHHHHh----CCCC-cchHHH
Q 007818 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPD----AVTTVHCLSACSQLGALDDGIWIHRFIEKE----NFNL-NVVLGT 351 (588)
Q Consensus 281 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~ 351 (588)
......+...|++++|...|++..+.+ +.+ ...+..+...+...|+++.|...++..... +..| ...++.
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 344455555666666666666655542 112 134445555555666666666666554332 1111 133455
Q ss_pred HHHHHhHhcCChhHHHHHhccCCC-----CC----cchHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 007818 352 ALVDMYAKCGNIAKALQVFHEMPE-----RN----SLTYTAIIGGLALHGK--------------------ALDAISYFS 402 (588)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~ 402 (588)
.+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|+..++
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 555666666666666666655442 11 2255556666666666 666666666
Q ss_pred HHHHC----CCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHH
Q 007818 403 EMIGV----GLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIR 473 (588)
Q Consensus 403 ~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (588)
+..+. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..++..|...|++++|.+.++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 54331 11111 124555666666677777777776666543111111 2355666666777777777777666
Q ss_pred hCC----CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHccCChHHHHHHHH
Q 007818 474 SMP----MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQD------SGIYVLLANMYRDSNMWEEAGKVRK 539 (588)
Q Consensus 474 ~~~----~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 539 (588)
+.. ..++ ..++..+...+...|++++|...++++++..+.. +.++..++.+|...|++++|.++++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 541 0111 3355566666667777777777777776654332 4456667777777777777777766
Q ss_pred HHHh
Q 007818 540 MMEE 543 (588)
Q Consensus 540 ~~~~ 543 (588)
+..+
T Consensus 332 ~al~ 335 (406)
T 3sf4_A 332 KHLE 335 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-13 Score=135.47 Aligned_cols=191 Identities=5% Similarity=-0.101 Sum_probs=158.1
Q ss_pred cchHHHHHHHHhHhcCCh-hHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007818 346 NVVLGTALVDMYAKCGNI-AKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILS 421 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 421 (588)
+...+..+...+...|++ ++|.+.|++..+ .+...|..+...|...|++++|+..|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 344555556666666666 666666665542 24567788888888899999999999998885 577788888999
Q ss_pred HhccC---------CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc--------CChHHHHHHHHhCC-CCC----
Q 007818 422 ACCHG---------GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS--------GLLEEAEQLIRSMP-MAA---- 479 (588)
Q Consensus 422 ~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~-~~~---- 479 (588)
++... |++++|...++++.+. .+.+...|..+..+|... |++++|.+.|+++. ..|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 99999 9999999999999874 345588899999999988 99999999999873 345
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHH
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
+...|..+..++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6888999999999999999999999999999999999999999999999999999975543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-13 Score=127.93 Aligned_cols=263 Identities=13% Similarity=0.034 Sum_probs=194.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHcccCChhHHHHHHHHHHHh----CCC-CcchHHH
Q 007818 281 NAIIGGYVQAKRSKEALALFHEMQATGIKPD----AVTTVHCLSACSQLGALDDGIWIHRFIEKE----NFN-LNVVLGT 351 (588)
Q Consensus 281 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~ 351 (588)
......+...|++++|...|+++.+.. +.+ ...+..+...+...|+++.|...++...+. +.. ....++.
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 344566777888888888888887753 222 245667777788888888888888766443 211 1245667
Q ss_pred HHHHHhHhcCChhHHHHHhccCCC-----CC----cchHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 007818 352 ALVDMYAKCGNIAKALQVFHEMPE-----RN----SLTYTAIIGGLALHGK--------------------ALDAISYFS 402 (588)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~~ 402 (588)
.+...+...|++++|...+++..+ ++ ..++..+...+...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 788888889999998888877652 12 2367778888888888 888988888
Q ss_pred HHHHC----CCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHH
Q 007818 403 EMIGV----GLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIR 473 (588)
Q Consensus 403 ~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 473 (588)
+.... +..| ...++..+...+...|++++|...+++..+.....++ ...+..++..+...|++++|.+.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 76542 1111 1236777888899999999999999988754211122 3377888999999999999999998
Q ss_pred hCC----CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHccCChHHHHHHHH
Q 007818 474 SMP----MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQD------SGIYVLLANMYRDSNMWEEAGKVRK 539 (588)
Q Consensus 474 ~~~----~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ 539 (588)
+.. ..++ ...+..+...+...|++++|...++++++..|.. ..++..++.+|.+.|++++|.++++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 762 1112 4567778888999999999999999998876543 4478899999999999999999999
Q ss_pred HHHhc
Q 007818 540 MMEER 544 (588)
Q Consensus 540 ~~~~~ 544 (588)
++.+.
T Consensus 328 ~a~~~ 332 (338)
T 3ro2_A 328 KHLEI 332 (338)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 99764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.6e-13 Score=129.41 Aligned_cols=154 Identities=14% Similarity=0.021 Sum_probs=112.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----h
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPD----EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----L 449 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 449 (588)
.++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-.++ .
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 3566777778888888888888887654210 122 236777888888999999999999887653211112 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC------CCC
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP----MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDP------QDS 515 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p------~~~ 515 (588)
.++..++..|...|++++|.+.+++.. ..++ ...+..+...+...|++++|...+++++++.+ ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 567788889999999999999988762 1122 55777888889999999999999999987643 235
Q ss_pred chHHHHHHHHHccCChH
Q 007818 516 GIYVLLANMYRDSNMWE 532 (588)
Q Consensus 516 ~~~~~l~~~~~~~g~~~ 532 (588)
.++..++.++...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 56788888888888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.5e-12 Score=132.80 Aligned_cols=164 Identities=15% Similarity=0.090 Sum_probs=143.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHH
Q 007818 377 NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMV 456 (588)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 456 (588)
+..+|+.|...|.+.|++++|+..|++.++.. +-+...+..+..++.+.|++++|++.|+++.+. -+.+...|..+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34578888999999999999999999988853 334668888999999999999999999999874 234478899999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHH
Q 007818 457 DLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEA 534 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 534 (588)
.+|.+.|++++|++.|+++ ...| +...+..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence 9999999999999999886 3455 5778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 007818 535 GKVRKMMEE 543 (588)
Q Consensus 535 ~~~~~~~~~ 543 (588)
.+.++++.+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988864
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-12 Score=109.12 Aligned_cols=167 Identities=11% Similarity=0.050 Sum_probs=138.4
Q ss_pred cchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007818 346 NVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA 422 (588)
Q Consensus 346 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 422 (588)
+..+|..+...|...|++++|.+.|++..+ .+..+|..+..+|...|++++|+..+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 456677788888888888888888887653 356678888888999999999999999888753 4456677777888
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A 500 (588)
+...++++.|...+.+.... .+.+...+..+...|.+.|++++|++.|++. ...| +...+..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88999999999999998874 3456788889999999999999999999887 3344 677899999999999999999
Q ss_pred HHHHHHHhccCCCCC
Q 007818 501 ERAAMKLLELDPQDS 515 (588)
Q Consensus 501 ~~~~~~~~~~~p~~~ 515 (588)
+..++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7e-12 Score=107.42 Aligned_cols=163 Identities=17% Similarity=0.051 Sum_probs=120.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHH
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (588)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 34445555666666666666666655432 334556666777777777777777777777663 234566777777777
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHH
Q 007818 460 GRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (588)
...|++++|.+.++++. .+.+...+..+...+...|++++|...++++++..|.++.++..++.++...|++++|.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888888888877652 2335667777888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 007818 538 RKMMEERG 545 (588)
Q Consensus 538 ~~~~~~~~ 545 (588)
++++.+..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 99987653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-11 Score=111.50 Aligned_cols=218 Identities=8% Similarity=-0.005 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHc-------ccCCh-------hHHHHHHHHHHHhCCCCcchHHHHHHHHhHh
Q 007818 294 KEALALFHEMQATGIKPDAVTTVHCLSACS-------QLGAL-------DDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359 (588)
Q Consensus 294 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (588)
++|..+|++..... +-+...|..+...+. ..|++ ++|..++++..+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56667777776642 334445555554443 23554 6677777666652112234466666667777
Q ss_pred cCChhHHHHHhccCCC--C-Ccc-hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-ccCCchHHHHH
Q 007818 360 CGNIAKALQVFHEMPE--R-NSL-TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSAC-CHGGLVDEGRK 434 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~ 434 (588)
.|++++|..+|++..+ | +.. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777766553 2 232 56666666677777777777777776643 23333443333222 12567777777
Q ss_pred HHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 007818 435 YFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAA--DVVVWGALFFACRLHGNVSIGERAAMKLL 508 (588)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (588)
+|++..+. .+.+...|..++..+.+.|++++|..+|+++. ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777663 23346666666777777777777777776652 133 24456666666666777777777777777
Q ss_pred ccCCCCC
Q 007818 509 ELDPQDS 515 (588)
Q Consensus 509 ~~~p~~~ 515 (588)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7777644
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-11 Score=115.68 Aligned_cols=229 Identities=10% Similarity=-0.005 Sum_probs=112.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCC------cchHHH
Q 007818 283 IIGGYVQAKRSKEALALFHEMQATGI-KPD----AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL------NVVLGT 351 (588)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~ 351 (588)
....+...|++++|...+++..+.-. .++ ..++..+...+...|+++.|...+++..+..... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556677888888888887765310 122 2345555666666666666666665554331110 112334
Q ss_pred HHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHhccC
Q 007818 352 ALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDE----ITFLGILSACCHG 426 (588)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~ 426 (588)
.+..+|...|++++|...+ ++..+... .++. .++..+..+|...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~-------------------------------~~al~~~~~~~~~~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHF-------------------------------QKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHH-------------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHH-------------------------------HHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence 4444444555555554444 43332100 0111 2344445555555
Q ss_pred CchHHHHHHHHHhhhhc---CC-CCChHHHHHHHHHHHhcCChHHHHHHHHhCC------CCCC-HhHHHHHHHHHHhhC
Q 007818 427 GLVDEGRKYFAQMSSIF---RL-SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP------MAAD-VVVWGALFFACRLHG 495 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~-~~~~~~l~~~~~~~~ 495 (588)
|++++|.+.+++..+.. +. +....++..++..|.+.|++++|.+.+++.. ..|. ...+..+...+...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 55555555555544310 11 1223445555555555555555555555431 0111 112233444444555
Q ss_pred C---HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 496 N---VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 496 ~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
+ +++|+..+++. ...|....++..++.+|...|++++|.+++++..+
T Consensus 318 ~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5 45555555544 22233344566677777777777777777777654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.5e-13 Score=125.74 Aligned_cols=235 Identities=11% Similarity=0.032 Sum_probs=129.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHh------CCCCc
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQAT-------GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE------NFNLN 346 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~ 346 (588)
+..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++...+. +..|.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 666777777777888887777777652 11222334455555555666666666665554432 10010
Q ss_pred chHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHH
Q 007818 347 VVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV------GLMP-DEITFLGI 419 (588)
Q Consensus 347 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l 419 (588)
...++..+...+...|++++|...++++.+. +..| ....+..+
T Consensus 110 ------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 110 ------------------------------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp ------------------------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 1223444555555555555555555555432 1112 22355666
Q ss_pred HHHhccCCchHHHHHHHHHhhhhc------CCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC----------CCCC---
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIF------RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP----------MAAD--- 480 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~--- 480 (588)
...+...|++++|.++++++.+.. ..+.....+..++..|...|++++|.+.++++. ..+.
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 667777777777777777765531 011124456667777777777777777776552 1111
Q ss_pred ----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 481 ----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 481 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
...+......+...+.+.++...++++....|.++.++..++.+|.+.|++++|.++++++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222223344556666777788888888888888999999999999999999999988653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-09 Score=111.41 Aligned_cols=212 Identities=9% Similarity=-0.050 Sum_probs=133.4
Q ss_pred CcchHHHHHHHHHhcCCHHHHH-HHhhhCCC---CCcccHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCCC
Q 007818 245 TVVSCTTMIVGYAKFGFLDIAR-KIFDDLPE---KYVVPWNAIIGGYVQAKRSKEALALFHEMQATG---------IKPD 311 (588)
Q Consensus 245 ~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~p~ 311 (588)
.+..|-..+..+...|+.++|. ++|+.... .+...|-..+...-..|++++|.++|+.+.... -.|+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 4455555555556666666664 66665433 122225556666667777777777777776531 0132
Q ss_pred ------------HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhc-CChhHHHHHhccCCC---
Q 007818 312 ------------AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC-GNIAKALQVFHEMPE--- 375 (588)
Q Consensus 312 ------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--- 375 (588)
...|...+....+.|+.+.|..+|....+........+|...+..-.+. ++++.|..+|+...+
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 2346666777777788888888888887762122334444333333344 458888888887764
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHH
Q 007818 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMP--DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS 453 (588)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 453 (588)
.+...|...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+..+.+++.+.. |+.....
T Consensus 502 ~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~---P~~~~~~ 578 (679)
T 4e6h_A 502 TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF---PEVNKLE 578 (679)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS---TTCCHHH
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCcHHH
Confidence 345566677777777888889999998888764222 22467777777777888888999988888752 4434444
Q ss_pred HHHHHH
Q 007818 454 CMVDLL 459 (588)
Q Consensus 454 ~l~~~~ 459 (588)
.+++-|
T Consensus 579 ~f~~ry 584 (679)
T 4e6h_A 579 EFTNKY 584 (679)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 445544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-11 Score=109.44 Aligned_cols=165 Identities=9% Similarity=-0.056 Sum_probs=93.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHH
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (588)
..+......+...|++++|+..|++..+....++...+..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHH
Confidence 4444555555555555556555555555432244455545555555566666666666655542 22234455555555
Q ss_pred HHhcCChHHHHHHHHhCC-CCC-CH-------hHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--CCchHHHHHHHHHc
Q 007818 459 LGRSGLLEEAEQLIRSMP-MAA-DV-------VVWGALFFACRLHGNVSIGERAAMKLLELDPQ--DSGIYVLLANMYRD 527 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~-~~~-~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~ 527 (588)
|...|++++|.+.+++.. ..| +. ..+..+...+...|++++|+..++++++.+|+ ++.++..++.+|..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 666666666666555541 122 22 23444555555566666666666666666666 55666666666665
Q ss_pred cCCh---------------------------HHHHHHHHHHHhcC
Q 007818 528 SNMW---------------------------EEAGKVRKMMEERG 545 (588)
Q Consensus 528 ~g~~---------------------------~~A~~~~~~~~~~~ 545 (588)
.|+. ++|+..+++..+..
T Consensus 166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5555 99999999988753
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.5e-12 Score=121.69 Aligned_cols=189 Identities=6% Similarity=-0.075 Sum_probs=143.3
Q ss_pred HHHHhHhcCChhHHHHHhccCCC-----C----CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-----HHHHH
Q 007818 353 LVDMYAKCGNIAKALQVFHEMPE-----R----NSLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPD-----EITFL 417 (588)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-----~~~~~ 417 (588)
....+...|++++|...+++..+ + ...++..+...|...|+++.|+..+++..+.-. .++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 45566777888888887776543 1 234677888888999999999999888765210 111 24788
Q ss_pred HHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC------CC-C-CHhHHH
Q 007818 418 GILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP------MA-A-DVVVWG 485 (588)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~-~-~~~~~~ 485 (588)
.+..+|...|++++|...++++.+...-.++ ..++..++.+|...|++++|.+.+++.. .. | ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999998764221122 2478889999999999999999998762 22 4 355788
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccC-----CCCCchHHHHHHHHHccCC---hHHHHHHHHHH
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELD-----PQDSGIYVLLANMYRDSNM---WEEAGKVRKMM 541 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 541 (588)
.+...+...|++++|...+++++++. |.....+..++.+|...|+ +++|+.++++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 88889999999999999999999874 3333346779999999999 77777777665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.4e-12 Score=123.62 Aligned_cols=135 Identities=10% Similarity=-0.007 Sum_probs=98.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----h
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPD----EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----L 449 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 449 (588)
.++..+...+...|++++|+..+++..+... .++ ..++..+..++...|++++|...+++......-..+ .
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 303 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEA 303 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3566677778888888888888877655310 112 126777888888999999999998887654211111 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-C---CC----CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP-M---AA----DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
..+..+...|...|++++|.+.+++.. . .+ ....+..+...+...|++++|...+++++++.+.
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 667788889999999999999988762 1 01 2446777888889999999999999999988763
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.7e-10 Score=108.11 Aligned_cols=262 Identities=13% Similarity=-0.009 Sum_probs=175.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHcccCChhHHHHHHHHHHHhCCCC-c----chHHHHH
Q 007818 283 IIGGYVQAKRSKEALALFHEMQATGIKPDAV----TTVHCLSACSQLGALDDGIWIHRFIEKENFNL-N----VVLGTAL 353 (588)
Q Consensus 283 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l 353 (588)
....+...|++++|...+++........+.. .+..+...+...|+++.|...+++........ + ...+..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3345566788888888888777653222221 34455566677788888888887765432111 1 1234566
Q ss_pred HHHhHhcCChhHHHHHhccCCC-------C----CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHHHHH
Q 007818 354 VDMYAKCGNIAKALQVFHEMPE-------R----NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLM--P--DEITFLG 418 (588)
Q Consensus 354 ~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p--~~~~~~~ 418 (588)
...+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 7778888888888888876542 1 1234566777888899999999999887653211 1 1246677
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHH-----HHHHHHHhcCChHHHHHHHHhCCC-CCC-----HhHHHHH
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS-----CMVDLLGRSGLLEEAEQLIRSMPM-AAD-----VVVWGAL 487 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~~~~l 487 (588)
+...+...|++++|...+++.............+. ..+..+...|++++|...+++... .|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77888889999999999998875421111111222 233457789999999999988742 221 2245667
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCC------CchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQD------SGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
...+...|++++|...++++++..+.. ..++..++.++...|++++|.+.+++....
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 777888999999999999887754321 136677888999999999999999988654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-11 Score=117.59 Aligned_cols=135 Identities=14% Similarity=0.049 Sum_probs=94.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----h
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPD----EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----L 449 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 449 (588)
..+..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...+++......-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 3566677777778888888888777654210 111 226777778888889999999888887653211112 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-C---CC----CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP-M---AA----DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
..+..+...|...|++++|.+.++++. . .+ ...++..+...+...|++++|...+++++++.+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 567778888999999999999988762 1 11 2446777888899999999999999999988764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-10 Score=108.78 Aligned_cols=213 Identities=10% Similarity=-0.037 Sum_probs=170.8
Q ss_pred hHHHHHHHHHHHhCCCCcchHHHHHHHHhH-------hcCCh-------hHHHHHhccCCC---C-CcchHHHHHHHHHh
Q 007818 329 DDGIWIHRFIEKENFNLNVVLGTALVDMYA-------KCGNI-------AKALQVFHEMPE---R-NSLTYTAIIGGLAL 390 (588)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~---~-~~~~~~~l~~~~~~ 390 (588)
++|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888887764 346667777777765 35886 899999988654 3 45589999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH-hcCChHH
Q 007818 391 HGKALDAISYFSEMIGVGLMPD-EI-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG-RSGLLEE 467 (588)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 467 (588)
.|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|+++.+. .+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 554 33 7888899999999999999999999873 3445566654444422 3799999
Q ss_pred HHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc---CCC-CCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 468 AEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLEL---DPQ-DSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 468 A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
|.++|+++. ..| +...|..++..+...|++++|..+++++++. .|+ +...|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999873 223 6778888988899999999999999999996 443 5678899999999999999999999999
Q ss_pred HhcCC
Q 007818 542 EERGV 546 (588)
Q Consensus 542 ~~~~~ 546 (588)
.+...
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 87654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-11 Score=105.98 Aligned_cols=206 Identities=10% Similarity=0.010 Sum_probs=155.4
Q ss_pred CCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHH
Q 007818 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIG 386 (588)
Q Consensus 310 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~ 386 (588)
.|...+......+...|++++|...|+...+....++...+..+..++...|++++|...+++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888899999999999999998887546777777788999999999999999988764 24567888889
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC---hHHHHHHH
Q 007818 387 GLALHGKALDAISYFSEMIGVGLMPDE-------ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK---LKHYSCMV 456 (588)
Q Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 456 (588)
.+...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.++++.+. .|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHH
Confidence 9999999999999999988853 3334 35777778888899999999999999863 343 56777788
Q ss_pred HHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 457 DLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
.+|...|+. +++++. ...+...+.... ....+.+++|+..+++++++.|+++.+...+..+..
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888766543 222221 112233333322 334567899999999999999999988887776543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-11 Score=121.42 Aligned_cols=179 Identities=12% Similarity=0.009 Sum_probs=155.7
Q ss_pred hhHHHHHhccCC---CCCcchHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHH
Q 007818 363 IAKALQVFHEMP---ERNSLTYTAIIGGLALHGKA-LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438 (588)
Q Consensus 363 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 438 (588)
++++...++... ..+...+..+...+...|++ ++|+..|++..+.. +.+...+..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555555443 23567888899999999999 99999999998863 44577899999999999999999999999
Q ss_pred hhhhcCCCCChHHHHHHHHHHHhc---------CChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhh--------CCHHH
Q 007818 439 MSSIFRLSPKLKHYSCMVDLLGRS---------GLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLH--------GNVSI 499 (588)
Q Consensus 439 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~--------~~~~~ 499 (588)
+.+. .|+...+..+...|... |++++|.+.++++. ..| +...|..+..++... |++++
T Consensus 163 al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9864 57788899999999999 99999999999873 344 578899999999888 99999
Q ss_pred HHHHHHHHhccCC---CCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 500 GERAAMKLLELDP---QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 500 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|+..++++++++| +++.++..++.+|...|++++|.+.++++.+..
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999999999999999999998754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-10 Score=99.50 Aligned_cols=167 Identities=12% Similarity=-0.021 Sum_probs=143.0
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 424 (588)
..+..+...+...|++++|...++++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 4456677888899999999999999875 356678888999999999999999999998863 456778888999999
Q ss_pred cCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHhHHHHHHHHHHhhCCHHHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-M-AADVVVWGALFFACRLHGNVSIGER 502 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~ 502 (588)
..|++++|.+.++++.+. .+.+...+..++..+...|++++|.+.++++. . +.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999874 35567888999999999999999999999873 2 3367788889999999999999999
Q ss_pred HHHHHhccCCCCCch
Q 007818 503 AAMKLLELDPQDSGI 517 (588)
Q Consensus 503 ~~~~~~~~~p~~~~~ 517 (588)
.++++++..|+++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999999877644
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=116.21 Aligned_cols=238 Identities=12% Similarity=0.065 Sum_probs=149.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHhhhCCC--------CC---cccHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 007818 246 VVSCTTMIVGYAKFGFLDIARKIFDDLPE--------KY---VVPWNAIIGGYVQAKRSKEALALFHEMQAT------GI 308 (588)
Q Consensus 246 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 308 (588)
...+..+...+...|++++|...++.+.. .+ ...+..+...|...|++++|...+++.... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 35678888999999999999999988764 12 223788899999999999999999998764 22
Q ss_pred CC-CHHHHHHHHHHHcccCChhHHHHHHHHHHHhC------CCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchH
Q 007818 309 KP-DAVTTVHCLSACSQLGALDDGIWIHRFIEKEN------FNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381 (588)
Q Consensus 309 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 381 (588)
.| ...++..+...+...|++++|...++.+.+.. ..|. ....+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~------------------------------~~~~~ 156 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD------------------------------VAKQL 156 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH------------------------------HHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH------------------------------HHHHH
Confidence 22 34567777788888889999888887776541 1111 12234
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhc------CCCCC
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGV------GLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIF------RLSPK 448 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~ 448 (588)
..+...+...|++++|+..++++.+. +..|. ..++..+..++...|++++|...++++.+.. ...+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 44455555555556665555555442 11222 2356666777777777777777777776420 01111
Q ss_pred -------hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 449 -------LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 449 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
...+..+...+...+.+.+|...++... ..| ...++..+...+...|++++|...+++++++.|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1122233334445566666666676664 233 4567888888999999999999999999988774
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-09 Score=105.96 Aligned_cols=233 Identities=13% Similarity=-0.023 Sum_probs=113.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCC-CcchHHHHHHHHh
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGI-KPD----AVTTVHCLSACSQLGALDDGIWIHRFIEKENFN-LNVVLGTALVDMY 357 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 357 (588)
...+...|++++|+..+++...... .++ ..++..+...+...|+++.|...++...+.... ++...
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-------- 179 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI-------- 179 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH--------
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh--------
Confidence 3445566777777777776654310 122 223444445555555555555555444332110 00000
Q ss_pred HhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhccCCchHHH
Q 007818 358 AKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV----GLMP-DEITFLGILSACCHGGLVDEG 432 (588)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a 432 (588)
....+++.+...|...|++++|+..+++..+. +..+ ...++..+..++...|++++|
T Consensus 180 ------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 180 ------------------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ------------------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 00123444444555555555555555444331 1000 112455555566666666666
Q ss_pred HHHHHHhhhhc---CCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC----C--CCC-HhHHHHHHHHHHhhCC---HHH
Q 007818 433 RKYFAQMSSIF---RLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP----M--AAD-VVVWGALFFACRLHGN---VSI 499 (588)
Q Consensus 433 ~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~~~---~~~ 499 (588)
.+.+++..+.. +.+....++..++..|.+.|++++|.+.+++.. . .|. ...+..+...+...++ +.+
T Consensus 242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 66666554410 112224555566666666666666666665541 1 122 1223333333444555 555
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 500 GERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 500 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
|+..+++. ...|.....+..++..|...|++++|.+.++++.+
T Consensus 322 al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 322 LLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555542 12233344566777777777777777777777653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.2e-10 Score=106.04 Aligned_cols=188 Identities=12% Similarity=0.031 Sum_probs=121.8
Q ss_pred HhHhcCChhHHHHHhccCCC-------C--CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 007818 356 MYAKCGNIAKALQVFHEMPE-------R--NSLTYTAIIGGLALHGKALDAISYFSEMIGVGL---MPD--EITFLGILS 421 (588)
Q Consensus 356 ~~~~~~~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~~~~~l~~ 421 (588)
.|...|++++|...|++..+ + ...+|+.+..+|...|++++|+..+++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666655554431 1 134566777777777777777777777654210 111 246777788
Q ss_pred HhccC-CchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---H-----hHHHHH
Q 007818 422 ACCHG-GLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD---V-----VVWGAL 487 (588)
Q Consensus 422 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~-----~~~~~l 487 (588)
.|... |++++|+..|++..+...-..+ ..++..++..|.+.|++++|.+.|++.. ..|+ . ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999999888764211111 3567788889999999999999998762 2222 1 146677
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCCch-----HHHHHHHHH--ccCChHHHHHHHHHHHh
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQDSGI-----YVLLANMYR--DSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~~ 543 (588)
..++...|++++|+..+++++++.|..+.. +..++.++. ..+++++|++.|+.+..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 777888999999999999999999875543 344556664 45778888888866543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.6e-10 Score=107.71 Aligned_cols=189 Identities=8% Similarity=-0.045 Sum_probs=142.2
Q ss_pred HHHHHhHhcCChhHHHHHhccCCC-----C----CcchHHHHHHHHHhcCChHHHHHHHHHHHHC----CC-CC-CHHHH
Q 007818 352 ALVDMYAKCGNIAKALQVFHEMPE-----R----NSLTYTAIIGGLALHGKALDAISYFSEMIGV----GL-MP-DEITF 416 (588)
Q Consensus 352 ~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~p-~~~~~ 416 (588)
.....+...|++++|...|++..+ + ...++..+...|...|+++.|+..+++..+. +- .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 345556677888888887776542 1 2346778888899999999999999887652 10 11 13478
Q ss_pred HHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC------CCC-CHhHHH
Q 007818 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP------MAA-DVVVWG 485 (588)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~-~~~~~~ 485 (588)
..+..+|...|++++|.+.+++..+...-.++ ..++..++.+|...|++++|.+.+++.. ..| ...++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88899999999999999999988763221122 4578889999999999999999998773 234 355778
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCC--C---CchHHHHHHHHHccCC---hHHHHHHHHH
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQ--D---SGIYVLLANMYRDSNM---WEEAGKVRKM 540 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~---~~~~~~l~~~~~~~g~---~~~A~~~~~~ 540 (588)
.+...+...|++++|...++++++..+. + ...+..+...+...|+ +++|+.+++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~ 328 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK 328 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 8888899999999999999999987543 2 3346677888888898 7777777765
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.17 E-value=3.4e-09 Score=95.76 Aligned_cols=162 Identities=7% Similarity=-0.051 Sum_probs=90.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCC-----ChHH
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLM-PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSP-----KLKH 451 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~ 451 (588)
..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.+++|.+. .| +..+
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~ 176 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHH
Confidence 334445556666666666666666666554321 23345556666666666666666666666543 34 2333
Q ss_pred HHHHHHH--HHhcC--ChHHHHHHHHhCCCC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhcc----------CCCCCc
Q 007818 452 YSCMVDL--LGRSG--LLEEAEQLIRSMPMA-ADVVVWGALFFACRLHGNVSIGERAAMKLLEL----------DPQDSG 516 (588)
Q Consensus 452 ~~~l~~~--~~~~g--~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------~p~~~~ 516 (588)
...|+.+ ....| ++.+|..+|+++..+ |+..+...++.++...|++++|+..++.+.+. +|+|+.
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~ 256 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPT 256 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHH
Confidence 3444433 22223 666666666666322 44222233333566666677776666665554 366666
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 517 IYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
++.+++.+....|+ +|.++++++.+.
T Consensus 257 ~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 257 FLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 66666655666665 666666666554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-09 Score=96.82 Aligned_cols=181 Identities=13% Similarity=0.001 Sum_probs=107.3
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCC--CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHH
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPE--RN----SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEI----TFLG 418 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~----~~~~ 418 (588)
.+..+...+.+.|++++|...|+++.+ |+ ...+..+..++...|++++|+..|+++.+. .|+.. .+..
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHH
Confidence 334455556666666666666666552 22 134555666666666666666666666654 22221 2333
Q ss_pred HHHHhcc------------------CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC
Q 007818 419 ILSACCH------------------GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD 480 (588)
Q Consensus 419 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 480 (588)
+..++.. .|++++|...|+++.+. .|-+...+........-.+..
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~--------------- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL--------------- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH---------------
Confidence 3333322 34555555555555542 111222221111100000000
Q ss_pred HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS---GIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 481 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
......+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 00113455668899999999999999999999876 568999999999999999999999998776543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.7e-10 Score=104.94 Aligned_cols=222 Identities=13% Similarity=0.105 Sum_probs=152.7
Q ss_pred cccCChhHHHHHHHHHHHh-------CCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC-------C----CcchHHHH
Q 007818 323 SQLGALDDGIWIHRFIEKE-------NFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE-------R----NSLTYTAI 384 (588)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l 384 (588)
...|+++.|...+++..+. ..+....++..+...|...|++++|...+++..+ + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888888888776553 1122456778889999999999999998887652 1 24567888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHhccCCchHHHHHHHHHhhhhc------CCCCChHH
Q 007818 385 IGGLALHGKALDAISYFSEMIGV------GLMP-DEITFLGILSACCHGGLVDEGRKYFAQMSSIF------RLSPKLKH 451 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~ 451 (588)
...|...|++++|+..+++..+. .-.| ...++..+...+...|++++|...++++.+.. ..+.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88999999999999999988764 1112 24577888889999999999999999887641 12223567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC----------CCCC-HhHHHHHHHHHHhhC------CHHHHHHHHHHHhccCCCC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSMP----------MAAD-VVVWGALFFACRLHG------NVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~~l~~~~~~~~------~~~~A~~~~~~~~~~~p~~ 514 (588)
+..++..|...|++++|.++++++. ..+. ...+..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 7888999999999999999998762 1222 223333333333222 2333333444333344556
Q ss_pred CchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+.++..++.+|...|++++|.++++++.+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778999999999999999999999998753
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=3e-08 Score=95.37 Aligned_cols=228 Identities=14% Similarity=-0.023 Sum_probs=126.2
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCCCCCcc-----hHHHHHHHHhccCChhHHHHHHHHHHHhCCC-CC----hhhHHHH
Q 007818 152 INGFVRSGFPREAIRLFRDMQLERVEPDEV-----TMIGMVSACAQLEDLNLGREIHWYISESGLT-LT----VPLANAL 221 (588)
Q Consensus 152 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 221 (588)
...+...|++++|...+++..... +++.. .+..+...+...|+++.|...++........ .+ ..++..+
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345566788888888887776543 22211 3444555666778888888777776654211 11 1234566
Q ss_pred HHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCC----cccHHHHHHHHHhcCChHHHH
Q 007818 222 MDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKY----VVPWNAIIGGYVQAKRSKEAL 297 (588)
Q Consensus 222 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~ 297 (588)
...+...|++++|...+++..+ +......++ ...+..+...+...|++++|.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQ------------------------LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH------------------------HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH------------------------HHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 7777788888888777765421 111111110 112455666777778888888
Q ss_pred HHHHHHHHCCCC--C--CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcc-hHHH-----HHHHHhHhcCChhHHH
Q 007818 298 ALFHEMQATGIK--P--DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNV-VLGT-----ALVDMYAKCGNIAKAL 367 (588)
Q Consensus 298 ~~~~~~~~~~~~--p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~A~ 367 (588)
..+++....... + ...++..+...+...|++++|...++........++. ..+. ..+..+...|++++|.
T Consensus 156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 235 (373)
T 1hz4_A 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 235 (373)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 888777653211 1 1234555666667777777777777766544222111 1111 1223355667777777
Q ss_pred HHhccCCCCCc-------chHHHHHHHHHhcCChHHHHHHHHHH
Q 007818 368 QVFHEMPERNS-------LTYTAIIGGLALHGKALDAISYFSEM 404 (588)
Q Consensus 368 ~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~ 404 (588)
..+++...+.. ..+..+...+...|++++|...+++.
T Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 76666554221 12334445555555555555555544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-09 Score=98.81 Aligned_cols=181 Identities=8% Similarity=-0.049 Sum_probs=100.7
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC--C-C---cchHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHHHH
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE--R-N---SLTYTAIIGGLALHGKALDAISYFSEMIGVGL-MPD-EITFLGI 419 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~-~~~~~~l 419 (588)
..+..+...+.+.|++++|...|+++.+ | + ...+..+..+|...|++++|+..|++..+... .|. ...+..+
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3344445555555555555555555542 1 1 23444455555555555555555555554311 111 2234444
Q ss_pred HHHhcc--------CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 007818 420 LSACCH--------GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFAC 491 (588)
Q Consensus 420 ~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~ 491 (588)
..++.. .|++++|...|+++.+.+ +.+......+.......+.. ...+..+...+
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~~ 158 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAARLY 158 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHHHH
Confidence 444444 555555555555555431 11111111111100000000 01135567778
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCC---chHHHHHHHHHcc----------CChHHHHHHHHHHHhcC
Q 007818 492 RLHGNVSIGERAAMKLLELDPQDS---GIYVLLANMYRDS----------NMWEEAGKVRKMMEERG 545 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 545 (588)
...|++++|+..++++++..|+++ .++..++.+|... |++++|.+.++++.+..
T Consensus 159 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 159 ERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 889999999999999999998844 4788889999876 88899999999987753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=6.2e-11 Score=97.29 Aligned_cols=143 Identities=9% Similarity=-0.043 Sum_probs=101.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (588)
|...+...|++++|+..++..... .|+ ...+..+...|.+.|++++|++.|+++.+. .+.+...|..+..+|.+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 334455567777777777776553 332 334556777788888888888888888764 234577788888888888
Q ss_pred CChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHH-HHHHhccCCCCCchHHHHHHHHHccCC
Q 007818 463 GLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERA-AMKLLELDPQDSGIYVLLANMYRDSNM 530 (588)
Q Consensus 463 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (588)
|++++|...|+++ ...| +...+..+...+.+.|++++|... ++++++++|+++.++.....++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888888776 3445 466777788888888887765554 588888888888888888888877775
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=87.96 Aligned_cols=128 Identities=19% Similarity=0.192 Sum_probs=89.3
Q ss_pred HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHh
Q 007818 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRL 493 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 493 (588)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|.++++++. .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344455555566666666666666543 12345555566666666666666666666552 22345566667777778
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.|++++|...++++++..|.++..+..++.++.+.|++++|.+.++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888889999999999999999998887643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=7.5e-09 Score=90.44 Aligned_cols=163 Identities=9% Similarity=-0.052 Sum_probs=134.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC----chHHHHHHHHHhhhhcCCCCChHH
Q 007818 376 RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG----LVDEGRKYFAQMSSIFRLSPKLKH 451 (588)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 451 (588)
.++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|++..+. -++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 456677777888888889999999999888865 56677777777777 6 899999999999764 35677
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhCCCC-CC---HhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 452 YSCMVDLLGR----SGLLEEAEQLIRSMPMA-AD---VVVWGALFFACRL----HGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 452 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~---~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
+..|...|.. .+++++|.++|++.... |. +..+..+...|.. .+++++|+..++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 8888888877 88999999999987533 43 7788888888888 78999999999999998 66888999
Q ss_pred HHHHHHHcc-C-----ChHHHHHHHHHHHhcCCc
Q 007818 520 LLANMYRDS-N-----MWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 520 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~ 547 (588)
.|+.+|... | ++++|.+.+++..+.|.+
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999999764 4 899999999999888754
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=100.82 Aligned_cols=173 Identities=9% Similarity=-0.066 Sum_probs=109.8
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCC-----CC----cchHHHHHHHHHhc-CChHHHHHHHHHHHHCCCC-CC----H
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPE-----RN----SLTYTAIIGGLALH-GKALDAISYFSEMIGVGLM-PD----E 413 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~-p~----~ 413 (588)
+++.+..+|...|++++|...+++..+ .+ ..+++.+...|... |++++|+..|++..+.... .+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 344444555555555555554444331 01 23566778888885 8888888888887653110 11 2
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCCh-----HHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH------
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKL-----KHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADV------ 481 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~------ 481 (588)
.++..+...+...|++++|...|+++.+...-.+.. ..+..++.++...|++++|...+++.. ..|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 238 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 467778888899999999999999988742111221 256777888889999999999998863 34432
Q ss_pred hHHHHHHHHHH--hhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007818 482 VVWGALFFACR--LHGNVSIGERAAMKLLELDPQDSGIYVLL 521 (588)
Q Consensus 482 ~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (588)
..+..++.++. ..+++++|+..++++.+++|.+...+..+
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~ 280 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI 280 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 13444555554 45678899999988888888554444333
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-09 Score=99.19 Aligned_cols=176 Identities=7% Similarity=-0.049 Sum_probs=140.1
Q ss_pred hHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhc
Q 007818 364 AKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF 443 (588)
Q Consensus 364 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (588)
+...+.+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 344445555444455667778888899999999999999998863 445668888899999999999999999998764
Q ss_pred CCCCChHHHH-HHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC--CchH
Q 007818 444 RLSPKLKHYS-CMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD--SGIY 518 (588)
Q Consensus 444 ~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~ 518 (588)
.|+..... .....+...++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++ +.++
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 35544333 2333466778888888888876 3344 67788899999999999999999999999999987 8899
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHh
Q 007818 519 VLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
..++.++...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999988754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.08 E-value=5.1e-09 Score=94.63 Aligned_cols=182 Identities=15% Similarity=0.099 Sum_probs=127.7
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCC-----CcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007818 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPER-----NSLTYTAIIGGLALHGKALDAISYFSEMI 405 (588)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 405 (588)
++..+++..+.+ .++...+..+..++...|++++|++++.+.... +...+..++..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555554443 334444456777788888888888888876432 34567777888999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--hcc--CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007818 406 GVGLMP-----DEITFLGILSA--CCH--GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476 (588)
Q Consensus 406 ~~~~~p-----~~~~~~~l~~~--~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (588)
+. .| +..+...++.+ ... .+++.+|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 66 35565666655 222 34899999999998764 3543333344448889999999999998652
Q ss_pred C-----------CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 477 M-----------AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 477 ~-----------~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
. .| ++.++..++......|+ .|.++++++.+..|++|.+...
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 1 24 45566566666666676 8899999999999999876653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-09 Score=99.19 Aligned_cols=203 Identities=11% Similarity=-0.005 Sum_probs=143.2
Q ss_pred CCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCc--chHHHHHHHHhHhcCChhHHHHHhccCCC--CC----cchH
Q 007818 310 PDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN--VVLGTALVDMYAKCGNIAKALQVFHEMPE--RN----SLTY 381 (588)
Q Consensus 310 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~ 381 (588)
.+...+......+...|++++|...|+.+.+..+... ...+..+..+|.+.|++++|...|++..+ |+ ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4566777788888999999999999999988753221 56678889999999999999999998874 32 3457
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHH
Q 007818 382 TAIIGGLAL--------HGKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHY 452 (588)
Q Consensus 382 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 452 (588)
..+..++.. .|++++|+..|+++.+. .|+.. .. .+...+..+... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~--------------~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVD--------------DATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHH--------------HHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHH--------------HHHHHHHHHHHH-----HHHHH
Confidence 778888888 99999999999999885 34432 22 111111122111 11225
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHHHHHHhh----------CCHHHHHHHHHHHhccCCCCCch
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALFFACRLH----------GNVSIGERAAMKLLELDPQDSGI 517 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~----------~~~~~A~~~~~~~~~~~p~~~~~ 517 (588)
..++..|.+.|++++|...|+++. ..|+ ...+..+..++... |++++|+..++++++..|+++.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 567778888888888888887762 2232 34566666666655 89999999999999999988654
Q ss_pred ---HHHHHHHHHccCChHH
Q 007818 518 ---YVLLANMYRDSNMWEE 533 (588)
Q Consensus 518 ---~~~l~~~~~~~g~~~~ 533 (588)
...+..++.+.|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 4445555555555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=113.91 Aligned_cols=168 Identities=10% Similarity=-0.041 Sum_probs=85.3
Q ss_pred HhcCChhHHHHHhccCC-----------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC
Q 007818 358 AKCGNIAKALQVFHEMP-----------ERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG 426 (588)
Q Consensus 358 ~~~~~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 426 (588)
...|++++|.+.+++.. ..+...+..+..++...|++++|+..|++..+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 34455555555554443 1233445555555555555555555555555432 22334555555555555
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAA 504 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 504 (588)
|++++|.+.|+++.+. .+.+...+..+..+|.+.|++++ .+.|+++ ...| +...+..+..++...|++++|+..+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555542 12234455555555555555555 5555544 1222 3445555555555555555555555
Q ss_pred HHHhccCCCCCchHHHHHHHHHccC
Q 007818 505 MKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 505 ~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
+++++++|+++.++..++.++...|
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HhhcccCcccHHHHHHHHHHHHccC
Confidence 5555555555555555555554433
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-09 Score=108.97 Aligned_cols=162 Identities=15% Similarity=0.040 Sum_probs=114.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCC-cccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHH
Q 007818 42 NSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPD-NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAV 120 (588)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (588)
+..+|+.+..++.+.|++++|++.|++..+ +.|+ ...+..+..++.+.|++++|...++++++.. +.+...+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~---l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455677777777777777777777777776 4454 4467777777777777777777777777764 2345677777
Q ss_pred HHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChh
Q 007818 121 IHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLN 197 (588)
Q Consensus 121 ~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 197 (588)
..+|...|++++|++.|++ +.+.+..+|+.+...+...|++++|++.|++..+.. +-+...+..+...+...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 7777777777777777776 344566677777777777888888888887777652 223456677777777777777
Q ss_pred HHHHHHHHHHH
Q 007818 198 LGREIHWYISE 208 (588)
Q Consensus 198 ~a~~~~~~~~~ 208 (588)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.1e-09 Score=90.98 Aligned_cols=159 Identities=7% Similarity=-0.025 Sum_probs=108.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHH-H
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL-L 459 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 459 (588)
+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++++... .|++..+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 4445556666777777777776665532 234456666677777777777777777777653 1233333222211 1
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHccCChHHHH
Q 007818 460 GRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD--SGIYVLLANMYRDSNMWEEAG 535 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~ 535 (588)
...+...+|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|+. +.++..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222333456666665 2345 57788888888999999999999999999999874 568999999999999999999
Q ss_pred HHHHHHHh
Q 007818 536 KVRKMMEE 543 (588)
Q Consensus 536 ~~~~~~~~ 543 (588)
..+++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6e-09 Score=83.45 Aligned_cols=131 Identities=17% Similarity=0.200 Sum_probs=106.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHH
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (588)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677888888899999999999887754 445667788888888899999999999998874 244577788888899
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 460 GRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
...|++++|.++++++. .+.+...+..+...+...|++++|...++++++..|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999998763 2235677888888899999999999999999998885
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.1e-09 Score=108.60 Aligned_cols=160 Identities=8% Similarity=-0.027 Sum_probs=124.6
Q ss_pred cCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 007818 360 CGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (588)
.|++++|.+.+++..+ .+...|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998874 346688889999999999999999999999864 445678889999999999999999999
Q ss_pred HHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhh---CCHHHHHHHHHHHhccC
Q 007818 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLH---GNVSIGERAAMKLLELD 511 (588)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~ 511 (588)
++..+. .+.+...+..+..+|.+.|++++|.+.+++.. ..| +...+..+...+... |++++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999874 34457889999999999999999999999873 334 577888888899999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 007818 512 PQDSGIYVLLA 522 (588)
Q Consensus 512 p~~~~~~~~l~ 522 (588)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888888776
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.9e-10 Score=92.47 Aligned_cols=125 Identities=12% Similarity=0.022 Sum_probs=103.3
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCC
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGN 496 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 496 (588)
|...+...|++++|+..++..... .+.+...+..+...|.+.|++++|.+.|+++ ...| +...|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 445667788999999999988752 2223455677899999999999999999987 3445 68899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHH-HHHHHhcC
Q 007818 497 VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV-RKMMEERG 545 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~ 545 (588)
+++|+..++++++++|+++.++..++.+|.+.|++++|.+. ++++.+..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999887765 58877643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=88.65 Aligned_cols=98 Identities=11% Similarity=-0.011 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...+..+...+.+.|++++|.+.|+++. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 5677788889999999999999999873 445 67889999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHhcCC
Q 007818 527 DSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~~~ 546 (588)
+.|++++|++.|+++.+...
T Consensus 116 ~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCC
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999987653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=5.1e-09 Score=96.21 Aligned_cols=200 Identities=10% Similarity=-0.010 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHcccCChhHHHHHHHHHHHh------CC-CCcchHHHHHHHHhHhcCChhHHHHHhccCCC-------C-
Q 007818 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKE------NF-NLNVVLGTALVDMYAKCGNIAKALQVFHEMPE-------R- 376 (588)
Q Consensus 312 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~- 376 (588)
..++..+...+...|++++|...++.+.+. +. +....++..+..+|...|++++|...+++..+ +
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 445556666666777777777777666543 11 12344566677777777777777777766542 1
Q ss_pred ---CcchHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhc---
Q 007818 377 ---NSLTYTAIIGGLALHGKALDAISYFSEMIGV------GLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIF--- 443 (588)
Q Consensus 377 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 443 (588)
...++..+...+...|++++|...+++..+. +-.|+ ..++..+..++...|++++|..+++++.+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 2346777888888888888888888887664 11222 3467788888999999999999999887631
Q ss_pred ---C-CCCChHHHHHHHHHHHhcCC------hHHHHHHHHhCCCC-C-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 444 ---R-LSPKLKHYSCMVDLLGRSGL------LEEAEQLIRSMPMA-A-DVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 444 ---~-~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
. .......+..+...+...+. +.++...++..... | ....+..+...+...|++++|...++++++..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1 11223344444444444333 34444444444322 3 35577888888999999999999999998753
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.96 E-value=8.4e-09 Score=89.88 Aligned_cols=128 Identities=6% Similarity=-0.013 Sum_probs=99.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh
Q 007818 382 TAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR 461 (588)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (588)
..+..+|...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+. .|.+...+..+..+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 448888999999999999999998863 445678889999999999999999999999874 34457888888888876
Q ss_pred cCC--hHHHHHHHHhCCCCCC--HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 462 SGL--LEEAEQLIRSMPMAAD--VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 462 ~g~--~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
.|+ ...+...++... .|+ ...+.....++...|++++|+..+++++++.|+
T Consensus 135 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 654 445666666653 333 334445566677789999999999999999995
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-08 Score=102.84 Aligned_cols=150 Identities=13% Similarity=0.010 Sum_probs=79.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 007818 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 471 (588)
|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|...|++++|.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45566666666655532 223455566666666666666666666666542 233455566666666666666666666
Q ss_pred HHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc---CChHHHHHHHHHHHhc
Q 007818 472 IRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS---NMWEEAGKVRKMMEER 544 (588)
Q Consensus 472 ~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 544 (588)
+++.. ..| +...+..+..++...|++++|...++++++..|+++.++..++.++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 66542 222 3555666666666666666666666666666666666666666666666 6666666666665443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-09 Score=110.96 Aligned_cols=154 Identities=9% Similarity=-0.065 Sum_probs=135.1
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 389 ALHGKALDAISYFSEMI--------GVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.++++.+. .+.+...|..+..+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 78899999999999998 432 345567888899999999999999999999874 3456788999999999
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHH
Q 007818 461 RSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVR 538 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 538 (588)
..|++++|.+.|+++ ...| +...+..+..++...|++++ +..++++++++|+++.++..++.+|.+.|++++|++.+
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999987 3445 56788889999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhcCC
Q 007818 539 KMMEERGV 546 (588)
Q Consensus 539 ~~~~~~~~ 546 (588)
+++.+.+.
T Consensus 558 ~~al~l~P 565 (681)
T 2pzi_A 558 DEVPPTSR 565 (681)
T ss_dssp HTSCTTST
T ss_pred HhhcccCc
Confidence 98876543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.3e-09 Score=81.76 Aligned_cols=94 Identities=9% Similarity=-0.027 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (588)
.+...+..|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444555555555555555555554 2222 4455555555555666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHhc
Q 007818 529 NMWEEAGKVRKMMEER 544 (588)
Q Consensus 529 g~~~~A~~~~~~~~~~ 544 (588)
|++++|++.|+++.+.
T Consensus 95 ~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 95 REWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666655543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-08 Score=93.39 Aligned_cols=218 Identities=14% Similarity=0.086 Sum_probs=148.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc-cCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHH
Q 007818 290 AKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ-LGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368 (588)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 368 (588)
.|++++|.+++++..+.. +.. +.. .++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456777777777766531 111 111 45666666666543 345666777777777
Q ss_pred HhccCCC-----CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHhccCCchHHHH
Q 007818 369 VFHEMPE-----RN----SLTYTAIIGGLALHGKALDAISYFSEMIGV----GLMPD--EITFLGILSACCHGGLVDEGR 433 (588)
Q Consensus 369 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~ 433 (588)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+. | .|. ..++..+..+|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 7765542 11 346777888888899999999988876542 2 222 2467778888888 9999999
Q ss_pred HHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----HhHHHHHHHHHHhhCCHHHHH
Q 007818 434 KYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP-M---AAD----VVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 434 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~~----~~~~~~l~~~~~~~~~~~~A~ 501 (588)
..+++..+...-..+ ..++..+...|.+.|++++|.+.|++.. . .++ ...+..++..+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998764211111 4678888999999999999999998762 1 122 225566666777889999999
Q ss_pred HHHHHHhccCCCCCch-----HHHHHHHHHccCChHHHHHH
Q 007818 502 RAAMKLLELDPQDSGI-----YVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 537 (588)
..+++++ ..|..... +..++.++ ..|+.+.+.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 98875433 34455555 56777766664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=6.8e-09 Score=90.46 Aligned_cols=158 Identities=13% Similarity=0.018 Sum_probs=117.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHhccCCchHHHHHHHHHhhhhcCCC
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPD-EITFLG----------------ILSACCHGGLVDEGRKYFAQMSSIFRLS 446 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 446 (588)
....+...|++++|+..|++..+. .|+ ...+.. +..++.+.|++++|...+++..+. .+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--AP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CC
Confidence 444566677777777777777664 343 334555 888899999999999999999984 34
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhC--CHHHHHHHHHHHhccCCCCCchHHHHH
Q 007818 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHG--NVSIGERAAMKLLELDPQDSGIYVLLA 522 (588)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (588)
.+...+..+..+|...|++++|.+.|+++ ...| +...+..+...+...| +.+.+...+.++....| ....+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence 56888999999999999999999999987 3445 5778888888876554 34556677777654333 233566788
Q ss_pred HHHHccCChHHHHHHHHHHHhcCC
Q 007818 523 NMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
.++...|++++|++.|+++.+...
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCC
Confidence 889999999999999999987643
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-06 Score=86.11 Aligned_cols=368 Identities=8% Similarity=-0.046 Sum_probs=205.1
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHhccCC--CCCcccHHHHHHHHHhCCC-hhHHHHHHHHhHHC-CCCC-CcchHHHHHH
Q 007818 114 MYVHNAVIHVFVSCGDLGLACNVFDESC--VRNLVSWNSLINGFVRSGF-PREAIRLFRDMQLE-RVEP-DEVTMIGMVS 188 (588)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~-~~~p-~~~~~~~ll~ 188 (588)
..+|...+..+-. |+++.+..+|++.. .|++..|...+....+.++ .+.+..+|+..... |..| +...|...+.
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 3566666666644 77888888888733 3677778777777666553 35566777766543 4333 4444555554
Q ss_pred HHhc----cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHH
Q 007818 189 ACAQ----LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264 (588)
Q Consensus 189 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 264 (588)
.+.. .++.+.+..+|+.++......-..+|......- .......+.+++.+... .|.. + ...+++
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~~----~y~~---a---r~~y~~ 162 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTLP----IFQS---S---FQRYQQ 162 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHH----HHHH---H---HHHHHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHhH----HHHH---H---HHHHHH
Confidence 4432 356777888888887632111112222222111 11112222222222100 0000 0 000122
Q ss_pred HHHHhhhCCCCCcccHHHHHHHHHhcC--C-----hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHH
Q 007818 265 ARKIFDDLPEKYVVPWNAIIGGYVQAK--R-----SKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRF 337 (588)
Q Consensus 265 a~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 337 (588)
+...+.. .+...|...+..-...+ - .+++..+|+++.... +.+...|...+.-+...|+.+.|..+++.
T Consensus 163 ~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~er 238 (493)
T 2uy1_A 163 IQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVER 238 (493)
T ss_dssp HHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2222221 12223444444322211 0 345677888887753 44566676677777788899999999988
Q ss_pred HHHhCCCCcchHHHHHHHHhHhcCChhHH-HHHhccCC------------CCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 007818 338 IEKENFNLNVVLGTALVDMYAKCGNIAKA-LQVFHEMP------------ERNSLTYTAIIGGLALHGKALDAISYFSEM 404 (588)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 404 (588)
.... +.+...+.. |....+.++. ..+.+... ......|...+....+.++.+.|..+|+..
T Consensus 239 Ai~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A 312 (493)
T 2uy1_A 239 GIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL 312 (493)
T ss_dssp HHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 8887 333333322 2211111111 11211110 011245666666666778899999999988
Q ss_pred HHCCCCCCHHHHHHHHHHhcc-CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhH
Q 007818 405 IGVGLMPDEITFLGILSACCH-GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVV 483 (588)
Q Consensus 405 ~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 483 (588)
.. ...+...|...+..-.. .++.+.|..+|+...+.+ +.++..+...++.....|+.+.|..+|+++. .....
T Consensus 313 -~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~l 386 (493)
T 2uy1_A 313 -GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRM 386 (493)
T ss_dssp -TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHH
T ss_pred -hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHH
Confidence 32 12344445433322222 336899999999998853 3345666777888888999999999999983 35667
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
|...+.--...|+.+.+..++++..+
T Consensus 387 w~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 387 WDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777788999999888888874
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.5e-09 Score=86.40 Aligned_cols=98 Identities=13% Similarity=0.036 Sum_probs=82.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
+...+..+...+.+.|++++|...|+++. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 35667778888888999999999888762 334 6778888888888999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHhcC
Q 007818 526 RDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 526 ~~~g~~~~A~~~~~~~~~~~ 545 (588)
...|++++|.+.++++.+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999887653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-08 Score=86.08 Aligned_cols=129 Identities=12% Similarity=-0.078 Sum_probs=90.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHH
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (588)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...+++..+. .+.+...+..++.+|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 34556667777788888888777653 556777777777778888888888888877764 234566777777777
Q ss_pred HhcCChHHHHHHHHhCC-CCC-----------------CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 460 GRSGLLEEAEQLIRSMP-MAA-----------------DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~~~-~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
...|++++|.+.++++. ..| ....+..+..++...|++++|...++++++..|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 77888888877777652 111 12566667777777777777777777777777764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.90 E-value=8.7e-09 Score=95.99 Aligned_cols=197 Identities=9% Similarity=-0.083 Sum_probs=149.9
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 007818 324 QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSE 403 (588)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 403 (588)
..|++++|..++++..+.... . .+...++++.|...|.. ....|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 356788899999888765321 1 01115788888887665 46778899999999999988
Q ss_pred HHHCCC---CCC--HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCC--C--ChHHHHHHHHHHHhcCChHHHHHHHHh
Q 007818 404 MIGVGL---MPD--EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLS--P--KLKHYSCMVDLLGRSGLLEEAEQLIRS 474 (588)
Q Consensus 404 ~~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 474 (588)
..+... .+. ..+|..+..+|...|++++|+..+++..+.+.-. + ...++..+..+|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 765311 111 3478888899999999999999999887642111 1 14577888899988 999999999987
Q ss_pred CC-C-----CC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC------chHHHHHHHHHccCChHHHHHHHHH
Q 007818 475 MP-M-----AA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS------GIYVLLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 475 ~~-~-----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 540 (588)
.. . .+ ...++..+...+...|++++|+..+++++++.|.+. ..+..++.++...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 62 1 11 145778888899999999999999999999876543 2677788888999999999999999
Q ss_pred HH
Q 007818 541 ME 542 (588)
Q Consensus 541 ~~ 542 (588)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 98
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.8e-08 Score=79.48 Aligned_cols=115 Identities=11% Similarity=-0.025 Sum_probs=95.8
Q ss_pred CCCCH-HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHH
Q 007818 409 LMPDE-ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWG 485 (588)
Q Consensus 409 ~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 485 (588)
+.|+. ..+......+.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 35667788888999999999999998874 3456788889999999999999999999876 3344 577889
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
.+..++...|++++|+..++++++++|+++.++..|..++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999988887653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-07 Score=87.51 Aligned_cols=161 Identities=11% Similarity=-0.044 Sum_probs=122.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHH
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGL-MPDEI----TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYS 453 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 453 (588)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999998877421 22221 2334666777888999999999999874122222 33688
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-------CC-C-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------CchH
Q 007818 454 CMVDLLGRSGLLEEAEQLIRSMP-------MA-A-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD------SGIY 518 (588)
Q Consensus 454 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~ 518 (588)
.++..|...|++++|.+.++++. .. + ...++..++..|...|++++|+..+++++++.+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999988763 11 2 23477888889999999999999999999876433 5679
Q ss_pred HHHHHHHHccCC-hHHHHHHHHHHHh
Q 007818 519 VLLANMYRDSNM-WEEAGKVRKMMEE 543 (588)
Q Consensus 519 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 543 (588)
..++.+|.+.|+ +++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999998864
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-08 Score=91.88 Aligned_cols=136 Identities=11% Similarity=0.001 Sum_probs=114.4
Q ss_pred CCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHhHHHHHH
Q 007818 410 MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAADVVVWGALF 488 (588)
Q Consensus 410 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~ 488 (588)
+.+...+..+...+...|++++|...++++.+. .+.+...+..++..|.+.|++++|.+.++++. ..|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 334456777888889999999999999999874 34567889999999999999999999999985 457655443333
Q ss_pred H-HHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 489 F-ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 489 ~-~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
. .+...++.+.|+..++++++.+|+++.++..++.+|...|++++|++.++++.+....
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 3 3667888889999999999999999999999999999999999999999999886543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.86 E-value=7.7e-08 Score=88.92 Aligned_cols=163 Identities=10% Similarity=-0.036 Sum_probs=122.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHhccCCchHHHHHHHHHhhhhcC--CCCC--h
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDE------ITFLGILSACCHGGLVDEGRKYFAQMSSIFR--LSPK--L 449 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~ 449 (588)
.+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+++..+... ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445667788889999999999887775322 22 1234455667788999999999998875311 1122 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC------C
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP----MAAD-----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ------D 514 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~ 514 (588)
.+++.++..|...|++++|.+.++++. ..|+ ..++..++..|...|++++|+..++++++..++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578889999999999999999998762 1122 257888888999999999999999999876542 1
Q ss_pred CchHHHHHHHHHccCChHHH-HHHHHHHHh
Q 007818 515 SGIYVLLANMYRDSNMWEEA-GKVRKMMEE 543 (588)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 543 (588)
+.++..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 787887754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4.2e-08 Score=81.85 Aligned_cols=127 Identities=9% Similarity=-0.019 Sum_probs=102.0
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACR 492 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 492 (588)
.+..+...+...|++++|...+++..+. .+.+...+..++..+...|++++|.+.+++.. ..| +...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566667777888888888888888763 34457778888888888888888888888762 233 5677888888899
Q ss_pred hhCCHHHHHHHHHHHhccCCCCCchHHHHHHH--HHccCChHHHHHHHHHHHh
Q 007818 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANM--YRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 543 (588)
..|++++|...++++++..|.++..+..+..+ +...|++++|++.++....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998888555554 8889999999999988754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-08 Score=85.61 Aligned_cols=120 Identities=9% Similarity=0.009 Sum_probs=73.6
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHH-HHhhCCH--H
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFA-CRLHGNV--S 498 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~~~~--~ 498 (588)
...|++++|...++...+. .+.+...+..++..|...|++++|.+.++++. ..| +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455666666666666553 23345666666666666666666666666552 222 44555556555 5566666 7
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 499 IGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 77777777777777777777777777777777777777777766543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.1e-07 Score=81.59 Aligned_cols=149 Identities=11% Similarity=0.099 Sum_probs=73.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchH--HHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC-----
Q 007818 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD--EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL----- 464 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 464 (588)
+++++++.+++.+.+.. +-+..+|..-..++.+.|.++ ++.++++++.+. .+-+...|+.-..++.+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhh
Confidence 34455555555555432 334444444444444444444 555555555542 22334444444444444443
Q ss_pred -hHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCC-HHHHHHHHHHHhccC---CCCCchHHHHHHHHHccCChHHHHHH
Q 007818 465 -LEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGN-VSIGERAAMKLLELD---PQDSGIYVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 465 -~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (588)
++++++.++++. ..| +...|..+...+.+.|+ .+.+.....++++++ |.++.++..++.+|.+.|+.++|.++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 455555554431 222 44455555545544444 233444555555444 55566666666666666666666666
Q ss_pred HHHHHh
Q 007818 538 RKMMEE 543 (588)
Q Consensus 538 ~~~~~~ 543 (588)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-08 Score=80.61 Aligned_cols=96 Identities=9% Similarity=-0.051 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...+..+...+.+.|++++|.+.|+++. ..| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4556667778888888888888888762 334 67778888888888999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHhc
Q 007818 527 DSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~ 544 (588)
..|++++|.+.++++.+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-06 Score=86.67 Aligned_cols=122 Identities=11% Similarity=0.027 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHc-ccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACS-QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYA 358 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (588)
|...+....+.++.+.|..+|+.. ... ..+...|......-. ..++.+.|..+|+...+... .++..+...++...
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 555555555666777777777777 211 122233322111111 12357777777777666531 12334444556566
Q ss_pred hcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 007818 359 KCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMI 405 (588)
Q Consensus 359 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 405 (588)
..|+.+.|..+|+.+.+ ....|...+..-...|+.+.+..++++..
T Consensus 366 ~~~~~~~aR~l~er~~k-~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 RIGDEENARALFKRLEK-TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHTCHHHHHHHHHHSCC-BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66777777777777632 34455555555555566666666665554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-07 Score=83.87 Aligned_cols=184 Identities=12% Similarity=-0.048 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCc--chHHHHHHHHhHhcCChhHHHHHhccCCC--CCc-c---hHHH
Q 007818 312 AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLN--VVLGTALVDMYAKCGNIAKALQVFHEMPE--RNS-L---TYTA 383 (588)
Q Consensus 312 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~---~~~~ 383 (588)
...+..+...+...|++++|...|+.+.+..+... ...+..+..+|.+.|++++|...|+++.+ |+. . ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 44556667788899999999999999988754322 35677889999999999999999999864 332 2 4555
Q ss_pred HHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccCCchHHHHHHHHHhhhhcC
Q 007818 384 IIGGLAL------------------HGKALDAISYFSEMIGVGLMPDEI-TFLGILSACCHGGLVDEGRKYFAQMSSIFR 444 (588)
Q Consensus 384 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 444 (588)
+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999986 45443 2211110 011111111
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc
Q 007818 445 LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG 516 (588)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 516 (588)
.....++..|.+.|++++|...|+++. ..|+ ...+..+..++.+.|++++|+..++++....|++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 122456778889999999999998873 2343 246778888899999999999999999998887543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.5e-08 Score=76.78 Aligned_cols=115 Identities=11% Similarity=-0.027 Sum_probs=77.9
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHhHHHHHHHHH
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MA-ADVVVWGALFFAC 491 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~ 491 (588)
..+..+...+...|++++|...++++.+ ..+.+...+..++..|...|++++|.+.++++. .. .+...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3555566666666666666666666664 223345666666666666777777776666552 22 2456667777777
Q ss_pred HhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCC
Q 007818 492 RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (588)
...|++++|+..++++++..|.++..+..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 788888888888888888888888888888887776653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.5e-07 Score=80.72 Aligned_cols=174 Identities=6% Similarity=-0.144 Sum_probs=117.3
Q ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC-CCcchHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 007818 331 GIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE-RNSLTYTAIIGGLALHG----KALDAISYFSEMI 405 (588)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~ 405 (588)
|...|+...+.| ++..+..+...|...+++++|...|++..+ .++..+..|...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444443 444555566666666666666666666543 345556666666666 5 7888888888887
Q ss_pred HCCCCCCHHHHHHHHHHhcc----CCchHHHHHHHHHhhhhcCCC-CChHHHHHHHHHHHh----cCChHHHHHHHHhCC
Q 007818 406 GVGLMPDEITFLGILSACCH----GGLVDEGRKYFAQMSSIFRLS-PKLKHYSCMVDLLGR----SGLLEEAEQLIRSMP 476 (588)
Q Consensus 406 ~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 476 (588)
+.| +...+..+...|.. .+++++|.++|++..+. +.. ..+..+..|...|.. .+++++|.++|++..
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 754 55667777777776 77888888888888764 211 126777788888887 778889999888774
Q ss_pred CC-CCHhHHHHHHHHHHhh-C-----CHHHHHHHHHHHhccCC
Q 007818 477 MA-ADVVVWGALFFACRLH-G-----NVSIGERAAMKLLELDP 512 (588)
Q Consensus 477 ~~-~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~p 512 (588)
.. ++...+..+...|... | ++++|...++++.+...
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 22 4555666777776543 3 88999999999888765
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=7e-08 Score=76.60 Aligned_cols=117 Identities=10% Similarity=-0.032 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHH
Q 007818 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFA 490 (588)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 490 (588)
...+..+...+...|++++|...++++... .+.+...+..++..+...|++++|.+.+++.. ..| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345666677777788888888888887764 23456777788888888888888888887762 233 56677888888
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCCh
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (588)
+...|++++|...++++++..|+++.++..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999888875
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.77 E-value=7.9e-08 Score=81.14 Aligned_cols=156 Identities=13% Similarity=-0.037 Sum_probs=108.9
Q ss_pred HHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hcc
Q 007818 350 GTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSA-CCH 425 (588)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~ 425 (588)
+......+...|++++|...|++..+ .+...+..+...+...|++++|+..+++.... .|+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 44566677788888888888888774 35567778888888888888888888877664 3344333222211 112
Q ss_pred CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HhHHHHHHHHHHhhCCHHHHH
Q 007818 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD---VVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~A~ 501 (588)
.+....|...+++..+. .+.+...+..+..++...|++++|.+.|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 22233467788887763 2345778888888889999999999888876 34453 457778888888889998898
Q ss_pred HHHHHHhc
Q 007818 502 RAAMKLLE 509 (588)
Q Consensus 502 ~~~~~~~~ 509 (588)
..+++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-07 Score=74.51 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHH
Q 007818 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFA 490 (588)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 490 (588)
...+..+...+...|++++|.++++++.+. .+.+...+..++..+.+.|++++|..+++++. .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666677777778888888888877764 23456677777778888888888888877662 22356677777788
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
+...|++++|...++++++..|+++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888998998888888888888888888776544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.8e-08 Score=76.30 Aligned_cols=97 Identities=12% Similarity=-0.053 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...+..++..+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4456677778888888888888887762 333 57778888888888899999999999999999998889999999999
Q ss_pred ccCChHHHHHHHHHHHhcC
Q 007818 527 DSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~~ 545 (588)
..|++++|.+.++++.+..
T Consensus 84 ~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 84 AVKEYASALETLDAARTKD 102 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhC
Confidence 9999999999999887653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.7e-06 Score=75.14 Aligned_cols=229 Identities=10% Similarity=0.013 Sum_probs=171.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHcccC--ChhHHHHHHHHHHHhCCCCcchHHHHHHHHh----Hhc--
Q 007818 290 AKRSKEALALFHEMQATGIKPDAV-TTVHCLSACSQLG--ALDDGIWIHRFIEKENFNLNVVLGTALVDMY----AKC-- 360 (588)
Q Consensus 290 ~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 360 (588)
....++|++++..++.. .|+.. .++.--.++...+ ++++++..++.+...+++ +..+++.-...+ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 33456899999998885 45544 4555555666667 899999999999887543 444444433333 344
Q ss_pred -CChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc------
Q 007818 361 -GNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKAL--DAISYFSEMIGVGLMPDEITFLGILSACCHGGL------ 428 (588)
Q Consensus 361 -~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------ 428 (588)
+++++++.+++.+.+ ++..+|+.-.-.+...|.++ ++++.++++.+.. .-|...|..-.......+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 789999999998874 45667777777778888888 9999999999875 4566777777766767666
Q ss_pred hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH-HHHHHHhCC-C----CCCHhHHHHHHHHHHhhCCHHHHHH
Q 007818 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE-AEQLIRSMP-M----AADVVVWGALFFACRLHGNVSIGER 502 (588)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~-~----~~~~~~~~~l~~~~~~~~~~~~A~~ 502 (588)
++++++.++.+... .+-+...|+.+...+.+.|+..+ +.++.+++. . ..++..+..++..+.+.|+.++|++
T Consensus 202 ~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 88999999999874 45678889988888988887555 556777653 1 2367788889899999999999999
Q ss_pred HHHHHhc-cCCCCCchHHHHHHH
Q 007818 503 AAMKLLE-LDPQDSGIYVLLANM 524 (588)
Q Consensus 503 ~~~~~~~-~~p~~~~~~~~l~~~ 524 (588)
+++++.+ .+|.....|...+..
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHhccChHHHHHHHHHHhh
Confidence 9999996 899888887766543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.1e-07 Score=79.45 Aligned_cols=123 Identities=11% Similarity=-0.022 Sum_probs=79.4
Q ss_pred HHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch
Q 007818 350 GTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV 429 (588)
Q Consensus 350 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 429 (588)
+..+...+...|++++|...|++...++...|..+...+...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34455566667777777777777666666666677777777777777777777666643 33455666666667777777
Q ss_pred HHHHHHHHHhhhhcCCCCC----------------hHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 430 DEGRKYFAQMSSIFRLSPK----------------LKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
++|.+.++++.+. .+.+ ...+..++.+|...|++++|.+.++++
T Consensus 88 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 88 DLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777776653 1111 255666666777777777777777664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.72 E-value=8.2e-08 Score=73.80 Aligned_cols=100 Identities=11% Similarity=-0.028 Sum_probs=83.9
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--CCchHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-M-AADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ--DSGIYVLLAN 523 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 523 (588)
+...+..++..+...|++++|...++++. . +.+...+..+...+...|++++|+..++++++..|. ++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34556677778888888888888887762 2 235677888888889999999999999999999999 9999999999
Q ss_pred HHHcc-CChHHHHHHHHHHHhcCCc
Q 007818 524 MYRDS-NMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 524 ~~~~~-g~~~~A~~~~~~~~~~~~~ 547 (588)
++... |++++|.+.++++.+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999999876543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-08 Score=93.15 Aligned_cols=188 Identities=7% Similarity=-0.046 Sum_probs=121.6
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACC 424 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 424 (588)
..+..+...+...|++++|...|++..+ .+...|..+...|...|++++|+..+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 4455566667777777777777776552 255667777788888888888888888877753 335567777888888
Q ss_pred cCCchHHHHHHHHHhhhhcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSP---KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 501 (588)
..|++++|...|+++.+...-.+ ....+..+ ...+...+.. .......++..... .+..+ ..|++++|+
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~-~l~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHS-YLTRL-IAAEREREL 155 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHH-HHHHH-HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHH-HHHHH-HHHHHHHHH
Confidence 88888888888888765411000 11111111 1112212211 12222222332222 22222 368999999
Q ss_pred HHHHHHhccCCCCCchHHHHHHHHHcc-CChHHHHHHHHHHHhc
Q 007818 502 RAAMKLLELDPQDSGIYVLLANMYRDS-NMWEEAGKVRKMMEER 544 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 544 (588)
+.++++++.+|++......+...+.+. +.+++|.++|+.+.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998887778887777776 7899999999988653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=89.32 Aligned_cols=94 Identities=12% Similarity=-0.060 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...|..+..+|.+.|++++|.+.++++. ..| +...+..+..++...|++++|+..+++++++.|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4677888888899999999999888762 334 67788888999999999999999999999999999999999999999
Q ss_pred ccCChHHH-HHHHHHHH
Q 007818 527 DSNMWEEA-GKVRKMME 542 (588)
Q Consensus 527 ~~g~~~~A-~~~~~~~~ 542 (588)
+.|++++| .+.++.+.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44566654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=6.4e-08 Score=75.68 Aligned_cols=95 Identities=14% Similarity=-0.027 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS 528 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 528 (588)
.+..++..+.+.|++++|...++++. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 35567778889999999999998873 344 6778888888899999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcC
Q 007818 529 NMWEEAGKVRKMMEERG 545 (588)
Q Consensus 529 g~~~~A~~~~~~~~~~~ 545 (588)
|++++|++.++++.+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=4.2e-08 Score=79.93 Aligned_cols=106 Identities=9% Similarity=-0.016 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHH
Q 007818 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFA 490 (588)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 490 (588)
...+..+...+...|++++|...|+.+... .+.+...|..+..+|...|++++|.+.|+++. ..| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 346667777888899999999999998874 34567888889999999999999999998863 334 56678888888
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHH
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 520 (588)
+...|++++|+..+++++++.|+++.....
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 999999999999999999999988766443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.2e-06 Score=78.98 Aligned_cols=202 Identities=10% Similarity=-0.079 Sum_probs=137.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchH---HHHHHHHhHhcCChhHHHHHhccCCCC
Q 007818 300 FHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVL---GTALVDMYAKCGNIAKALQVFHEMPER 376 (588)
Q Consensus 300 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~ 376 (588)
+..+......|+..++..+...+.-.- ..+.......+... +...+..+...|++++|...+++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~---------~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI---------IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT---------HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH---------HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 344443334677777766666554221 11111111222222 223466788899999999999886542
Q ss_pred C---c------chHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhccCCchHHHHHHHHHhhhh
Q 007818 377 N---S------LTYTAIIGGLALHGKALDAISYFSEMIGVGLM-PD----EITFLGILSACCHGGLVDEGRKYFAQMSSI 442 (588)
Q Consensus 377 ~---~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 442 (588)
. . ..+..+...+...+++++|+..+++..+.... ++ ..++..+..+|...|++++|...++++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1 12334667777888999999999999874322 22 226888999999999999999999998853
Q ss_pred cC----CCCC-hHHHHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CHhHHHHHHHHHHhhC-CHHHHHHHHHHHh
Q 007818 443 FR----LSPK-LKHYSCMVDLLGRSGLLEEAEQLIRSMP-------MAA-DVVVWGALFFACRLHG-NVSIGERAAMKLL 508 (588)
Q Consensus 443 ~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~ 508 (588)
.. ..+. ..++..++..|.+.|++++|.+.+++.. ..+ -...+..+..++...| ++++|...+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11 1111 3477889999999999999999998762 112 2667888888999999 4699999999997
Q ss_pred cc
Q 007818 509 EL 510 (588)
Q Consensus 509 ~~ 510 (588)
++
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.7e-07 Score=74.03 Aligned_cols=99 Identities=13% Similarity=-0.008 Sum_probs=77.9
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
.+...+..++..+...|++++|...|++. ...| +...+..+...+...|++++|+..+++++++.|+++.++..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45667777777788888888888887765 2233 466777777788888888888888888888888888888888888
Q ss_pred HHccCChHHHHHHHHHHHhcC
Q 007818 525 YRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 525 ~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|...|++++|.+.++++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 888888888888888887653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-07 Score=74.86 Aligned_cols=104 Identities=7% Similarity=-0.042 Sum_probs=87.9
Q ss_pred CCCH-HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHH
Q 007818 410 MPDE-ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGA 486 (588)
Q Consensus 410 ~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 486 (588)
.|+. ..+..+...+.+.|++++|...|+++... -|.+...|..+..+|...|++++|.+.|+++ ...| ++..|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 4443 36777788899999999999999999974 3456888999999999999999999999987 3445 5678888
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
+..++...|++++|+..+++++++.|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=74.86 Aligned_cols=95 Identities=7% Similarity=-0.054 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc-------hHHH
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG-------IYVL 520 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~~~ 520 (588)
..+..++..+.+.|++++|++.|+++ ...| +...|..+..++...|++++|+..+++++++.|+++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566777788888888888888765 2334 4667777777888888888888888888888776543 5667
Q ss_pred HHHHHHccCChHHHHHHHHHHHhc
Q 007818 521 LANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
++.++...|++++|++.|++..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777888888888888888887654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-07 Score=78.37 Aligned_cols=110 Identities=14% Similarity=-0.015 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHH
Q 007818 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFF 489 (588)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 489 (588)
+...+..+...+...|++++|+..|++..+. .+.+...|..+..+|.+.|++++|.+.++++. ..| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3457778888899999999999999999874 34467888899999999999999999998863 344 5778888888
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
++...|++++|+..+++++++.|+++..+...+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 8999999999999999999999998886655553
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.1e-07 Score=78.61 Aligned_cols=128 Identities=7% Similarity=0.034 Sum_probs=101.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHH-HHhcCCh--
Q 007818 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL-LGRSGLL-- 465 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 465 (588)
...|++++|+..++...+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 45678888999998887753 456678888899999999999999999999874 24467778888888 7789998
Q ss_pred HHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 466 EEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 466 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
++|.+.++++. ..| +...+..+...+...|++++|...++++++..|+++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 99999998873 334 5678888888899999999999999999999998866543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.9e-07 Score=83.31 Aligned_cols=192 Identities=9% Similarity=-0.097 Sum_probs=101.6
Q ss_pred ccCChhHHHHHHHHHHHhCCCCcchHHHHH-------HHHhHhcCChhHHHHHhccCCC--C-------C----------
Q 007818 324 QLGALDDGIWIHRFIEKENFNLNVVLGTAL-------VDMYAKCGNIAKALQVFHEMPE--R-------N---------- 377 (588)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~--~-------~---------- 377 (588)
..++...|.+.|..+....+. ....|..+ ...+.+.++..++...+..-.+ | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 467888888888888777532 23344444 3333333344444444333332 1 1
Q ss_pred -----cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC--hH
Q 007818 378 -----SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK--LK 450 (588)
Q Consensus 378 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 450 (588)
...+......+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 011233445566666677776666665553 243334444444566666666666666644331 0 111 22
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCCC---CC--HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHH
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMPMA---AD--VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLL 521 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 521 (588)
.+..+..++.+.|++++|+..|++.... |. ...+.....++.+.|+.++|...|+++...+|+ +.+...|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 4555666666666666666666655211 22 224445555566666666666666666666665 4444444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=4.2e-07 Score=70.44 Aligned_cols=95 Identities=16% Similarity=0.073 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (588)
..+..++..+...|++++|.+.+++.. ..| +...+..+...+...|++++|...++++++..|.++..+..++.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 334445555555555555555555441 122 344555555555555666666666666666666555556666666666
Q ss_pred cCChHHHHHHHHHHHhc
Q 007818 528 SNMWEEAGKVRKMMEER 544 (588)
Q Consensus 528 ~g~~~~A~~~~~~~~~~ 544 (588)
.|++++|.+.+++..+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 66666666666655543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.7e-07 Score=72.61 Aligned_cols=100 Identities=9% Similarity=-0.039 Sum_probs=89.9
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
+.+...+..++..+.+.|++++|.+.++++ ...| +...+..+...+...|++++|+..++++++..|.++.++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 344678888999999999999999999986 3444 67788888889999999999999999999999999999999999
Q ss_pred HHHccCChHHHHHHHHHHHhcC
Q 007818 524 MYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 524 ~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
++.+.|++++|.+.++++.+..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999998754
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=84.47 Aligned_cols=124 Identities=10% Similarity=-0.052 Sum_probs=72.6
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----hHHHHHHHHHHhh
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADV----VVWGALFFACRLH 494 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~~~~ 494 (588)
+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 445555666777777766666542 233224445555666667777777776655332322 2455555566666
Q ss_pred CCHHHHHHHHHHHhccC--CC-CCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 495 GNVSIGERAAMKLLELD--PQ-DSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 495 ~~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|++++|+..++++.... |. .+.+...++.++.+.|+.++|...|+++....
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77777777777666432 32 33355666666677777777777777666544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-06 Score=75.98 Aligned_cols=153 Identities=10% Similarity=-0.041 Sum_probs=91.0
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhc---CCCC-ChHHHHHHHHHHHhcCCh
Q 007818 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIF---RLSP-KLKHYSCMVDLLGRSGLL 465 (588)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 465 (588)
..|++++|.+.++.+.. .......++..+...+...|++++|...+++..... +.++ ....+..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664443332 111233456666666666777777777666665421 1111 134556666777777777
Q ss_pred HHHHHHHHhCC----CCC-C----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--C----CchHHHHHHHHHccCC
Q 007818 466 EEAEQLIRSMP----MAA-D----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQ--D----SGIYVLLANMYRDSNM 530 (588)
Q Consensus 466 ~~A~~~~~~~~----~~~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~g~ 530 (588)
++|.+.+++.. ..+ + ...+..+...+...|++++|...++++++..+. + ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 77777776541 011 1 234566666777788888888888877754321 2 2235678888888888
Q ss_pred hHHHHHHHHHHHh
Q 007818 531 WEEAGKVRKMMEE 543 (588)
Q Consensus 531 ~~~A~~~~~~~~~ 543 (588)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=6.5e-07 Score=69.32 Aligned_cols=111 Identities=11% Similarity=-0.012 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHH
Q 007818 413 EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFA 490 (588)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~ 490 (588)
...+..+...+...|++++|...+++.... .+.+...+..++..+...|++++|.+.+++.. ..| +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 345566667777788888888888887763 23456777778888888888888888887762 233 56677888888
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
+...|++++|...++++++..|+++..+..++.+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 88999999999999999999999888888777654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-07 Score=79.01 Aligned_cols=167 Identities=8% Similarity=-0.025 Sum_probs=99.5
Q ss_pred hHhcCChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHH
Q 007818 357 YAKCGNIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGR 433 (588)
Q Consensus 357 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 433 (588)
....|+++.+.+.|+...+. ....+..+...+...|++++|+..|++..+.. |+...+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~-------------- 77 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ-------------- 77 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------------
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------------
Confidence 34445566666555543321 33455566666667777777777777766632 211100000
Q ss_pred HHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 434 KYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
....-.. ......+..+..+|...|++++|.+.++++. ..| +...+..+..++...|++++|+..+++++++.
T Consensus 78 -~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 78 -ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp -HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 0000000 0013567778888888888888888888762 233 57788888888999999999999999999999
Q ss_pred CCCCchHHHHHHHHHccCChHHHH-HHHHHHHhc
Q 007818 512 PQDSGIYVLLANMYRDSNMWEEAG-KVRKMMEER 544 (588)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 544 (588)
|+++.++..++.++...|+.+++. ..+..+...
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999988888777 555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.8e-07 Score=72.67 Aligned_cols=94 Identities=13% Similarity=-0.049 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD----VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
..+..+...+...|++++|.+.|++. ...|+ ...+..+...+...|++++|+..++++++..|+++.++..++.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 33344444444444444444444433 22232 23344444444444555555555555555555444445555555
Q ss_pred HHccCChHHHHHHHHHHHh
Q 007818 525 YRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 525 ~~~~g~~~~A~~~~~~~~~ 543 (588)
|...|++++|.+.++++.+
T Consensus 109 ~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.7e-07 Score=71.40 Aligned_cols=111 Identities=11% Similarity=-0.134 Sum_probs=84.1
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHH
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFAC 491 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 491 (588)
..+......+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|.+.+++.. ..| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34556666777788888888888887763 24456777888888888888888888887762 334 566788888888
Q ss_pred HhhCCHHHHHHHHHHHhccC------CCCCchHHHHHHHHH
Q 007818 492 RLHGNVSIGERAAMKLLELD------PQDSGIYVLLANMYR 526 (588)
Q Consensus 492 ~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 526 (588)
...|++++|+..+++++++. |.++.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 88999999999999999988 877777777766543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=7.3e-07 Score=69.86 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...+..++..+...|++++|.++++++. .+.+...+..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999999873 23467788889999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHhcC
Q 007818 527 DSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~~ 545 (588)
..|++++|.+.++++.+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhC
Confidence 9999999999999997754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.54 E-value=3.5e-07 Score=73.42 Aligned_cols=63 Identities=16% Similarity=-0.035 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhcc-------CCCCCchH----HHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLEL-------DPQDSGIY----VLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..|.....++.+.|++++|+..+++++++ +|+++.+| ...+.++...|++++|++.|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888889999999998888888 99999999 99999999999999999999999764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.53 E-value=4.4e-07 Score=73.34 Aligned_cols=107 Identities=14% Similarity=0.021 Sum_probs=83.7
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACR 492 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 492 (588)
.+..+...+...|++++|...|+.+... .+.+...|..+..+|.+.|++++|.+.|+++. ..| ++..+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4555667778888888888888888874 34467778888888888999999998888762 334 4567777888888
Q ss_pred hhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
..|++++|+..+++++++.|+++........
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 9999999999999999999988776655443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.4e-06 Score=77.80 Aligned_cols=162 Identities=12% Similarity=-0.075 Sum_probs=119.3
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCC--C-Cc------chHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HH
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPE--R-NS------LTYTAIIGGLALHGKALDAISYFSEMIGVGL---MPD--EI 414 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~--~~ 414 (588)
.+...+..+...|++++|.+.+++..+ + .. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 345567778889999999888875442 1 11 2234466667888999999999999876321 122 34
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHhCC-C------CC-CH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-----LKHYSCMVDLLGRSGLLEEAEQLIRSMP-M------AA-DV 481 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------~~-~~ 481 (588)
++..+...|...|++++|...++++.+.....|+ ..++..++..|...|++++|.+.+++.. . .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888899999999999999999998732111222 2578889999999999999999998762 1 11 25
Q ss_pred hHHHHHHHHHHhhCCHHHH-HHHHHHHhcc
Q 007818 482 VVWGALFFACRLHGNVSIG-ERAAMKLLEL 510 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~ 510 (588)
.++..+...+...|++++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888899999999999 7778888754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.6e-07 Score=73.68 Aligned_cols=96 Identities=14% Similarity=-0.005 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...+..+...+.+.|++++|.+.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455666666666677777766666552 223 45566666666666677777777777777777766666666777777
Q ss_pred ccCChHHHHHHHHHHHhc
Q 007818 527 DSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~ 544 (588)
..|++++|.+.++++.+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 777777777666666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.5e-06 Score=69.21 Aligned_cols=113 Identities=11% Similarity=-0.050 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHH
Q 007818 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWG 485 (588)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 485 (588)
+...+..+...+...|++++|...|++..+. .|+ ...+..+...|...|++++|.+.+++.. ..| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 4456666677777777777777777777642 344 5667777778888888888888887652 233 566777
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (588)
.+..++...|++++|...++++++..|+++.++..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 888888899999999999999999999988888877776544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=6.6e-07 Score=70.82 Aligned_cols=98 Identities=16% Similarity=0.041 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MA-ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
+...+..++..+...|++++|.+.++++. .. .+...+..+...+...|++++|+..++++++..|+++.++..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45677888899999999999999999873 33 36778888899999999999999999999999999999999999999
Q ss_pred HccCChHHHHHHHHHHHhcC
Q 007818 526 RDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 526 ~~~g~~~~A~~~~~~~~~~~ 545 (588)
...|++++|.+.++++.+..
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~ 110 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD 110 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS
T ss_pred HHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999998764
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.49 E-value=2e-06 Score=71.38 Aligned_cols=128 Identities=9% Similarity=-0.095 Sum_probs=91.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHH
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (588)
..+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 345666777778888888888888877753 345667777888888888888888888888774 34456778888888
Q ss_pred HHhcCChHHHHHHHHhCC-CCC-CHhHH--HHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 459 LGRSGLLEEAEQLIRSMP-MAA-DVVVW--GALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
+...|++++|.+.++++. ..| +...+ ...+..+...|++++|+..+.+..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888887762 223 33444 3333346677888888888877654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.47 E-value=7.3e-07 Score=70.55 Aligned_cols=90 Identities=17% Similarity=0.064 Sum_probs=48.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCCC-H---hHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC---CchHHHHHHHHH
Q 007818 455 MVDLLGRSGLLEEAEQLIRSMP-MAAD-V---VVWGALFFACRLHGNVSIGERAAMKLLELDPQD---SGIYVLLANMYR 526 (588)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~-~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~ 526 (588)
++..+...|++++|.+.|+++. ..|+ . ..+..+..++...|++++|+..++++++..|++ +.++..++.++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 3444455555555555555441 1121 1 244445555555666666666666666666655 444566666666
Q ss_pred ccCChHHHHHHHHHHHhc
Q 007818 527 DSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 527 ~~g~~~~A~~~~~~~~~~ 544 (588)
..|++++|.+.++++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666665543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.47 E-value=9.5e-07 Score=76.33 Aligned_cols=153 Identities=14% Similarity=0.042 Sum_probs=92.4
Q ss_pred hcCChhHHHH---HhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHhccCCchH
Q 007818 359 KCGNIAKALQ---VFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG----VGLMP-DEITFLGILSACCHGGLVD 430 (588)
Q Consensus 359 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~~~~~ 430 (588)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 44332223345566666667777777777777766554 11111 2235666677777788888
Q ss_pred HHHHHHHHhhhhcCCCC-C----hHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HhHHHHHHHHHHhhCCH
Q 007818 431 EGRKYFAQMSSIFRLSP-K----LKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAAD----VVVWGALFFACRLHGNV 497 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~ 497 (588)
+|.+.+++..+...-.+ + ...+..+...+...|++++|.+.+++.. ..++ ...+..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88877777655311112 1 3446667777788888888887777652 1112 22356666777788888
Q ss_pred HHHHHHHHHHhccC
Q 007818 498 SIGERAAMKLLELD 511 (588)
Q Consensus 498 ~~A~~~~~~~~~~~ 511 (588)
++|...+++++++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.2e-06 Score=70.06 Aligned_cols=113 Identities=11% Similarity=-0.101 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHH
Q 007818 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALF 488 (588)
Q Consensus 411 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~ 488 (588)
.+...+..+...+...|++++|...|+..... .+.+...+..++.++...|++++|...+++.. ..| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45567777778888888888888888888764 23456778888888888888888888887762 333 566788888
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCC-----CCchHHHHHHHH
Q 007818 489 FACRLHGNVSIGERAAMKLLELDPQ-----DSGIYVLLANMY 525 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~ 525 (588)
.++...|++++|+..+++++++.|+ +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999988887 455555555443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=8.3e-07 Score=73.58 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 482 VVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 482 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
..+..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 456666667777777777777777777777777777777777777777777777777777665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.6e-07 Score=71.74 Aligned_cols=83 Identities=13% Similarity=0.052 Sum_probs=49.7
Q ss_pred cCChHHHHHHHHhCC-C---CC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHH
Q 007818 462 SGLLEEAEQLIRSMP-M---AA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGK 536 (588)
Q Consensus 462 ~g~~~~A~~~~~~~~-~---~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 536 (588)
.|++++|+..|+++. . .| +...+..+..++...|++++|+..++++++..|+++.++..++.++...|++++|++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 355555555555542 2 13 234555566666666677777777777777777766677777777777777777777
Q ss_pred HHHHHHhc
Q 007818 537 VRKMMEER 544 (588)
Q Consensus 537 ~~~~~~~~ 544 (588)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76666543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.41 E-value=7.1e-07 Score=88.26 Aligned_cols=118 Identities=9% Similarity=0.001 Sum_probs=94.3
Q ss_pred HHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCH
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNV 497 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~ 497 (588)
...+.+.|++++|.+.++++.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34466788888999988888874 2345778888888999999999999998876 3444 577888888889999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHH--HHccCChHHHHHHHH
Q 007818 498 SIGERAAMKLLELDPQDSGIYVLLANM--YRDSNMWEEAGKVRK 539 (588)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 539 (588)
++|+..+++++++.|+++.++..++.+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999988888 888899999999988
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.41 E-value=3e-06 Score=83.76 Aligned_cols=84 Identities=12% Similarity=-0.028 Sum_probs=39.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHH
Q 007818 389 ALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA 468 (588)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 468 (588)
.+.|++++|++.+++..+.. +.+...+..+..++.+.|++++|++.++++.+ -.+.+...+..+..+|...|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555444431 22234444445555555555555555555544 2222344444555555555555555
Q ss_pred HHHHHhC
Q 007818 469 EQLIRSM 475 (588)
Q Consensus 469 ~~~~~~~ 475 (588)
.+.++++
T Consensus 94 ~~~~~~a 100 (477)
T 1wao_1 94 LRDYETV 100 (477)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.40 E-value=8.9e-07 Score=70.08 Aligned_cols=107 Identities=7% Similarity=-0.044 Sum_probs=58.2
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-C----CCC----HhHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-M----AAD----VVVWG 485 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~----~~~----~~~~~ 485 (588)
.+..+...+...|++++|...++++.+. .+.+...+..++..|...|++++|...++++. . .++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4455555666666666666666666553 23345555556666666666666666655541 1 111 44455
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 486 ALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 486 ~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
.+...+...|++++|...++++++..| ++.....+..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 555555556666666666666666555 34444444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-05 Score=73.36 Aligned_cols=171 Identities=11% Similarity=0.092 Sum_probs=94.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHcccC-ChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhc-C-Ch
Q 007818 288 VQAKRSKEALALFHEMQATGIKPDAV-TTVHCLSACSQLG-ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKC-G-NI 363 (588)
Q Consensus 288 ~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 363 (588)
...+..++|+++++.+... .|+.. .++.--.++...+ .+++++.+++.+....++ +..+++.-..++... + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 3445567888888888875 34433 3444444444455 477777777777766432 444454444444444 4 66
Q ss_pred hHHHHHhccCCCCC---cchHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc----
Q 007818 364 AKALQVFHEMPERN---SLTYTAIIGGLALHGKAL--------DAISYFSEMIGVGLMPDEITFLGILSACCHGGL---- 428 (588)
Q Consensus 364 ~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---- 428 (588)
++++++++.+.+.+ ..+|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 67777777666543 334444444444444444 6666666666643 3355556665555555554
Q ss_pred ---hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC
Q 007818 429 ---VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464 (588)
Q Consensus 429 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (588)
++++++.++++... .+-+...|+.+-..+.+.|.
T Consensus 221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 45666666665542 23445555555555555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00016 Score=66.74 Aligned_cols=240 Identities=11% Similarity=0.056 Sum_probs=163.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC-ChhHHHHHh
Q 007818 292 RSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG-NIAKALQVF 370 (588)
Q Consensus 292 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~ 370 (588)
++..+...+..+...+ +..++|+.+++.+...+.. +..+++.-...+...| .++++++.+
T Consensus 52 ~y~~~~~~~r~~~~~~------------------e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~ 112 (349)
T 3q7a_A 52 EYKDAMDYFRAIAAKE------------------EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLM 112 (349)
T ss_dssp HHHHHHHHHHHHHHTT------------------CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC------------------CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3456666666666554 2345688888888877533 4455666666666777 599999999
Q ss_pred ccCCCC---CcchHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchH--------HHHHHHH
Q 007818 371 HEMPER---NSLTYTAIIGGLALH-G-KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVD--------EGRKYFA 437 (588)
Q Consensus 371 ~~~~~~---~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~ 437 (588)
+.+... +..+|+.-...+... + ++++++.+++.+.+.. +-|...|..-..++.+.|.++ ++++.++
T Consensus 113 ~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~ 191 (349)
T 3q7a_A 113 NEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCN 191 (349)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHH
Confidence 988753 455676666666665 6 8899999999998864 456667776666655555555 8999999
Q ss_pred HhhhhcCCCCChHHHHHHHHHHHhcCC-------hHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCH-----------
Q 007818 438 QMSSIFRLSPKLKHYSCMVDLLGRSGL-------LEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNV----------- 497 (588)
Q Consensus 438 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~----------- 497 (588)
++.+. .+-+...|+....++.+.+. ++++++.++++ ...| |...|..+-..+.+.|+.
T Consensus 192 k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~ 269 (349)
T 3q7a_A 192 EMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPY 269 (349)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGG
T ss_pred HHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccc
Confidence 99884 35577888888888888876 68888888776 3444 677777766666665543
Q ss_pred ---------HHHHHHHHHHhccC------CCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeE
Q 007818 498 ---------SIGERAAMKLLELD------PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSS 554 (588)
Q Consensus 498 ---------~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 554 (588)
........++.... +..+.++..|+.+|...|+.++|.++++.+.+. ..|....+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw 340 (349)
T 3q7a_A 270 TASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYW 340 (349)
T ss_dssp TC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHH
T ss_pred ccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHH
Confidence 33333333443332 457778899999999999999999999998643 344444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.37 E-value=3.8e-06 Score=82.67 Aligned_cols=94 Identities=12% Similarity=0.022 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...|..+..+|.+.|++++|++.++++. ..| +...+..+..++...|++++|+..++++++++|+++.++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4677888889999999999999998762 334 67788889999999999999999999999999999999999999999
Q ss_pred ccCChHHHHH-HHHHHH
Q 007818 527 DSNMWEEAGK-VRKMME 542 (588)
Q Consensus 527 ~~g~~~~A~~-~~~~~~ 542 (588)
+.|++++|.+ .++.|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999998875 355553
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=3.4e-07 Score=78.94 Aligned_cols=118 Identities=9% Similarity=-0.078 Sum_probs=87.0
Q ss_pred CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-C----------------HhHHHHH
Q 007818 426 GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-D----------------VVVWGAL 487 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~----------------~~~~~~l 487 (588)
.|+++++.+.|+..... .......+..+...+.+.|++++|.+.|++.. ..| + ...+..+
T Consensus 17 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -----CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 34455555544433221 11124456667777788888888888887652 112 1 2677888
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
..++...|++++|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 8889999999999999999999999999999999999999999999999999998754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.36 E-value=3e-06 Score=77.46 Aligned_cols=113 Identities=8% Similarity=-0.169 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHH
Q 007818 412 DEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFF 489 (588)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 489 (588)
+...+..+...+...|++++|...|+++.+. .+.+...+..+..+|.+.|++++|.+.++++ ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4456667777778888888888888888764 2335677777888888888888888888765 3444 4667777777
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
++...|++++|+..+++++++.|+++..+...++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 7888888888888888888887776555444444333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=7e-06 Score=80.54 Aligned_cols=163 Identities=7% Similarity=-0.141 Sum_probs=115.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHhccCCchHHHHHHHHHhhhhc---CCCC-ChHH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGVG-LMPDE----ITFLGILSACCHGGLVDEGRKYFAQMSSIF---RLSP-KLKH 451 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~ 451 (588)
+..++..|...|++++|.+.+..+.+.- -.++. .+...+...+...|+++.|..+++...... +..+ ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5667788888888888888887765421 11222 123334445566788999998888765421 2222 2567
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC---CC----Cc
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSMP-------MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDP---QD----SG 516 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~----~~ 516 (588)
+..++..|...|++++|..+++++. .++ ....+...+..|...|++++|...+++++...| .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 7889999999999999999988762 122 245777888889999999999999999886543 22 23
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 517 IYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 517 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 466778888899999999998887754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=2e-06 Score=67.68 Aligned_cols=101 Identities=9% Similarity=0.013 Sum_probs=59.7
Q ss_pred HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----C----HhHHHH
Q 007818 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA----D----VVVWGA 486 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~----~~~~~~ 486 (588)
+..+...+.+.|++++|+..|+++.+. .|.+...|..+..+|...|++++|++.+++.. ..| + ..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 444555555556666666666655542 12335555556666666666666666655441 111 1 234556
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 487 LFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
+..++...|++++|+..++++++..| ++....
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 66677788888888888888888877 444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-06 Score=81.22 Aligned_cols=147 Identities=12% Similarity=-0.019 Sum_probs=74.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHH
Q 007818 379 LTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDL 458 (588)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (588)
..+..+...+.+.|++++|+..|++.... .|+... +...++..++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 34556666667777777777777776653 344321 22233333332211 1 1367778888
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH-HccCChHHHH
Q 007818 459 LGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY-RDSNMWEEAG 535 (588)
Q Consensus 459 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~ 535 (588)
|.+.|++++|.+.++++ ...| +...+..+..++...|++++|+..+++++++.|+++.++..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888876 2334 5677888888888888999999999999888888888888888774 4556777888
Q ss_pred HHHHHHHhcC
Q 007818 536 KVRKMMEERG 545 (588)
Q Consensus 536 ~~~~~~~~~~ 545 (588)
++|+++....
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888876554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.33 E-value=3.8e-06 Score=64.18 Aligned_cols=100 Identities=16% Similarity=0.016 Sum_probs=65.8
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---CHhHHHHHHH
Q 007818 414 ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA---DVVVWGALFF 489 (588)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~ 489 (588)
..+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.+++.. ..| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34455556666667777777777666653 23345566667777777777777777776652 223 4566667777
Q ss_pred HHHhh-CCHHHHHHHHHHHhccCCCCC
Q 007818 490 ACRLH-GNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 490 ~~~~~-~~~~~A~~~~~~~~~~~p~~~ 515 (588)
.+... |++++|.+.++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 788888888888888777654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=2.9e-06 Score=66.12 Aligned_cols=98 Identities=11% Similarity=-0.032 Sum_probs=68.6
Q ss_pred HHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHh
Q 007818 416 FLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRL 493 (588)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 493 (588)
+..+...+.+.|++++|...++++.+. .+.+...|..+..++...|++++|+..++++ ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344555667778888888888887763 2445777777888888888888888888776 2344 56677777778888
Q ss_pred hCCHHHHHHHHHHHhccCCCCC
Q 007818 494 HGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
.|++++|+..++++++.+|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888888654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.2e-06 Score=65.05 Aligned_cols=103 Identities=10% Similarity=0.053 Sum_probs=70.7
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCCh---HHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HhHHHHHHHH
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKL---KHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----VVVWGALFFA 490 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~ 490 (588)
+...+...|++++|...|+.+.+.. +.+. ..+..++.++.+.|++++|.+.++++. ..|+ ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 4455666777777777777776641 2222 466667777777788888877777652 2232 4566777777
Q ss_pred HHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 491 CRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 491 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
+...|++++|...++++++..|+++.+......
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 888899999999999999998887665554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.31 E-value=4.7e-06 Score=65.76 Aligned_cols=95 Identities=8% Similarity=0.009 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC-------CchHHH
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD-------SGIYVL 520 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~ 520 (588)
..+..++..+...|++++|...++++. .+.+...+..+...+...|++++|...++++++..|++ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 345555666666666666666666542 12245555556666666666666666666666665544 555666
Q ss_pred HHHHHHccCChHHHHHHHHHHHhc
Q 007818 521 LANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 521 l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
++.++...|++++|.+.++++.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 666666666666666666666554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.9e-06 Score=69.20 Aligned_cols=129 Identities=14% Similarity=0.008 Sum_probs=79.5
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC----CHh
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP----MAA----DVV 482 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~ 482 (588)
++..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444555555555555555555432110111 1345556666666666666666666541 011 133
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCC------CCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQ------DSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.+..+...+...|++++|...++++++..+. .+.++..++.++...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5566666777788888888888887765321 245678889999999999999999998865
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-06 Score=81.37 Aligned_cols=136 Identities=14% Similarity=-0.010 Sum_probs=84.9
Q ss_pred CCChhhHHhhcccCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCc----------------ccHHHH
Q 007818 25 SKNLDYCTKILFNVQ---NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDN----------------FTYPLL 85 (588)
Q Consensus 25 ~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~~~l 85 (588)
.+++++|...++... +.+...|..+...+.+.|++++|+..|++... +.|+. ..|..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS---WLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HhhccccCChHHHHHHHHHHHHHHHHH
Confidence 455666666665543 33566788899999999999999999999987 34543 455666
Q ss_pred HHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhcc---CCCCCcccHHHHHHHHHhCCChh
Q 007818 86 FKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDE---SCVRNLVSWNSLINGFVRSGFPR 162 (588)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~ 162 (588)
..++.+.|++++|...++++++.. +.+...+..+..+|...|++++|+..|++ +.+.+..++..+...+.+.|+.+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 281 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL 281 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666654 23445555555555555555555555554 22334444555555555555555
Q ss_pred HH
Q 007818 163 EA 164 (588)
Q Consensus 163 ~a 164 (588)
++
T Consensus 282 ~a 283 (336)
T 1p5q_A 282 AR 283 (336)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=6.9e-05 Score=68.87 Aligned_cols=178 Identities=8% Similarity=-0.005 Sum_probs=98.4
Q ss_pred hHHHHHhccCCC---CCcchHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCc-hHHHHHHHH
Q 007818 364 AKALQVFHEMPE---RNSLTYTAIIGGLALHG--KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGL-VDEGRKYFA 437 (588)
Q Consensus 364 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~ 437 (588)
++++.+++.+.. ++..+|+.-...+...+ .+++++.+++.+.+.. +-|...|+.-..++...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 344444444432 23444544444444444 2566666666666543 3344555555555555555 466666666
Q ss_pred HhhhhcCCCCChHHHHHHHHHHHhc--------------CChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhh-------
Q 007818 438 QMSSIFRLSPKLKHYSCMVDLLGRS--------------GLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLH------- 494 (588)
Q Consensus 438 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~------- 494 (588)
.+.+. .+-+...|+.....+.+. +.++++++.+.... ..| |...|.-+-..+...
T Consensus 170 ~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 66653 234455555544444433 33555666665542 233 444554443333332
Q ss_pred ----CCHHHHHHHHHHHhccCCCCCchHHHHHHHH---HccCChHHHHHHHHHHHhc
Q 007818 495 ----GNVSIGERAAMKLLELDPQDSGIYVLLANMY---RDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 495 ----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~ 544 (588)
+.++++++.+.++++..|++..++..++... ...|..++....+.++.+.
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 3467888888888889998766555544322 2467788888888888764
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.26 E-value=4.6e-06 Score=79.33 Aligned_cols=90 Identities=10% Similarity=-0.051 Sum_probs=78.7
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
+...|..+..+|.+.|++++|.+.++++ ...| +...+..+..++...|++++|+..+++++++.|+++.++..++.++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3567888999999999999999999886 4445 5778888899999999999999999999999999999999999999
Q ss_pred HccCChHHHHHH
Q 007818 526 RDSNMWEEAGKV 537 (588)
Q Consensus 526 ~~~g~~~~A~~~ 537 (588)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 998888877654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-06 Score=68.23 Aligned_cols=93 Identities=13% Similarity=0.078 Sum_probs=69.4
Q ss_pred CCchHHHHHHHHHhhhhcC--CCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHH
Q 007818 426 GGLVDEGRKYFAQMSSIFR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~ 501 (588)
.|++++|+..|+++.+. + .+.+...+..+..+|...|++++|.+.++++. ..| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 57788888888888763 2 13345677788888888999999998888762 334 5667788888888999999999
Q ss_pred HHHHHHhccCCCCCchHH
Q 007818 502 RAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~ 519 (588)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999998876544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-06 Score=70.44 Aligned_cols=78 Identities=15% Similarity=0.010 Sum_probs=63.5
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC-chHHHHHHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS-GIYVLLANM 524 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 524 (588)
+...|..+..+|.+.|++++|...++++ ...| +...+..+..++...|++++|+..++++++++|+++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3567888889999999999999999876 3344 577888899999999999999999999999999887 555555544
Q ss_pred H
Q 007818 525 Y 525 (588)
Q Consensus 525 ~ 525 (588)
.
T Consensus 142 ~ 142 (162)
T 3rkv_A 142 T 142 (162)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.8e-05 Score=77.28 Aligned_cols=169 Identities=7% Similarity=-0.057 Sum_probs=132.7
Q ss_pred ChhHHHHHhccCCCC---CcchHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC-
Q 007818 362 NIAKALQVFHEMPER---NSLTYTAIIGGLALHGK----------ALDAISYFSEMIGVGLMPDEITFLGILSACCHGG- 427 (588)
Q Consensus 362 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~- 427 (588)
..++|.+.++.+... +..+|+.-..++...|+ +++++..++.+.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 345667777776642 34456665556655565 899999999998864 456678888888888888
Q ss_pred -chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhh---------
Q 007818 428 -LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG-LLEEAEQLIRSMP-MAA-DVVVWGALFFACRLH--------- 494 (588)
Q Consensus 428 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~--------- 494 (588)
+++++.+.++++.+. .+-+...|+.-..++.+.| .++++.+.++++. ..| +...|......+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 679999999999984 3556888888888888888 8999999998874 445 677888777776553
Q ss_pred -----CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHH
Q 007818 495 -----GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEE 533 (588)
Q Consensus 495 -----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 533 (588)
+.++++++.+.++++.+|+|..+|..+.+++.+.|++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998665
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.21 E-value=6.5e-06 Score=61.50 Aligned_cols=65 Identities=25% Similarity=0.162 Sum_probs=59.6
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+...+..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56778888888999999999999999999999999999999999999999999999999998764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.19 E-value=7.1e-06 Score=80.47 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=92.8
Q ss_pred hccCCchHHHHHHHHHhhhhc--CCCC----ChHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HhHHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIF--RLSP----KLKHYSCMVDLLGRSGLLEEAEQLIRSM---------PMAAD-VVVWGA 486 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~ 486 (588)
+...|++++|+.++++..+.. -+.| ...+++.|+.+|...|++++|..++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446788888888777765531 1112 2567788888888889988888888765 12344 447788
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhc-----cCCCCCch---HHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 487 LFFACRLHGNVSIGERAAMKLLE-----LDPQDSGI---YVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 487 l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+...|...|++++|+.+++++++ ++|++|.+ ...+..++..+|++++|..++.+++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999876 56877665 457888889999999999999999764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=7.7e-07 Score=68.16 Aligned_cols=93 Identities=12% Similarity=-0.017 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC------CchHH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD------SGIYV 519 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~ 519 (588)
+...+..+...+.+.|++++|.+.+++.. ..| +...+..+..++...|++++|+..+++++++.|++ +.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45667778888888888888888888762 333 57778888888899999999999999999999988 77788
Q ss_pred HHHHHHHccCChHHHHHHHHH
Q 007818 520 LLANMYRDSNMWEEAGKVRKM 540 (588)
Q Consensus 520 ~l~~~~~~~g~~~~A~~~~~~ 540 (588)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777665543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=6.7e-05 Score=68.95 Aligned_cols=184 Identities=8% Similarity=0.001 Sum_probs=136.0
Q ss_pred hcCChh-HHHHHhccCCCCCcc---hHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 007818 359 KCGNIA-KALQVFHEMPERNSL---TYTAIIGGLALHGK----------ALDAISYFSEMIGVGLMPDEITFLGILSACC 424 (588)
Q Consensus 359 ~~~~~~-~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 424 (588)
+.|.+. +|++.++.+...|+. +|+.--..+...+. +++++.+++.+.... +-+..+|..-..++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 344444 677777776644333 34433333322222 578899999988864 456677877777776
Q ss_pred cCC--chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC-hHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhh-----
Q 007818 425 HGG--LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL-LEEAEQLIRSMP-MAA-DVVVWGALFFACRLH----- 494 (588)
Q Consensus 425 ~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~----- 494 (588)
..+ +++++..+++++.+. .+-+...|+.-..++...|. ++++++.++++. ..| +...|+.....+...
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred ccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 667 489999999999984 45678888888888888888 589999988873 334 677787777666554
Q ss_pred ---------CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc-----------CChHHHHHHHHHHHhcC
Q 007818 495 ---------GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDS-----------NMWEEAGKVRKMMEERG 545 (588)
Q Consensus 495 ---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~ 545 (588)
+.+++++..+.+++..+|+|..+|+.+-+++.+. +.++++++.++++.+..
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 4588999999999999999999999988888877 56899999999998754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.12 E-value=8.3e-06 Score=76.69 Aligned_cols=151 Identities=12% Similarity=-0.032 Sum_probs=83.2
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG 427 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 427 (588)
..+..+...+.+.|++++|...|++....++... .+...++..++...+. ...|..+..++.+.|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHcC
Confidence 4467788889999999999999988664222211 1223334444433221 136778888999999
Q ss_pred chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HhHHHHHHHH-HHhhCCHHHHHHHH
Q 007818 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD-VVVWGALFFA-CRLHGNVSIGERAA 504 (588)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~-~~~~~~~~~A~~~~ 504 (588)
++++|+..++++.+. .+.+...|..+..+|...|++++|.+.|+++. ..|+ ...+..+... ....+..+.+...+
T Consensus 245 ~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~ 322 (338)
T 2if4_A 245 RYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMY 322 (338)
T ss_dssp CCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999874 34567889999999999999999999999873 4564 3344444444 23456778889999
Q ss_pred HHHhccCCCCC
Q 007818 505 MKLLELDPQDS 515 (588)
Q Consensus 505 ~~~~~~~p~~~ 515 (588)
+++++..|.++
T Consensus 323 ~~~l~~~p~~~ 333 (338)
T 2if4_A 323 KGIFKGKDEGG 333 (338)
T ss_dssp -----------
T ss_pred HHhhCCCCCCC
Confidence 99999999765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=2.7e-05 Score=62.14 Aligned_cols=112 Identities=10% Similarity=-0.095 Sum_probs=67.2
Q ss_pred chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHH
Q 007818 428 LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERA 503 (588)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~ 503 (588)
++++|.++|++..+. + .|... |...|...+..++|.++|++.....++.....+...|.. .+++++|...
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 445555555555543 2 12211 444444545555555555554333445555555555555 5677777777
Q ss_pred HHHHhccCCCCCchHHHHHHHHHc----cCChHHHHHHHHHHHhcCCc
Q 007818 504 AMKLLELDPQDSGIYVLLANMYRD----SNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 504 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 547 (588)
++++.+. .++.++..|+.+|.. .+++++|.+.+++..+.|.+
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 7777665 456777788888877 77888888888888776643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.08 E-value=6.3e-06 Score=66.09 Aligned_cols=73 Identities=14% Similarity=0.033 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CC-------CCC-HhHH----HHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSM-PM-------AAD-VVVW----GALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (588)
.|..+..++.+.|++++|+..+++. .. .|+ ...| .....++...|++++|+..|++++++.|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777888888888877777665 23 675 5577 888899999999999999999999999998877
Q ss_pred HHHHHH
Q 007818 518 YVLLAN 523 (588)
Q Consensus 518 ~~~l~~ 523 (588)
..-+..
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 665543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.07 E-value=2.3e-05 Score=57.12 Aligned_cols=69 Identities=14% Similarity=0.009 Sum_probs=59.5
Q ss_pred CCHhHHHHHHHHHHhhCC---HHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 479 ADVVVWGALFFACRLHGN---VSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
+++..+..+..++...++ .++|...++++++.+|+++.++..++..+.+.|++++|+++|+++.+...+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466677777777655444 699999999999999999999999999999999999999999999887644
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.3e-05 Score=61.68 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=51.2
Q ss_pred HHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 468 AEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 468 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
|.+.+++. ...| +...+..+...+...|++++|+..++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44444443 2233 45566666666777777777777777777777777777777777777777777777777776553
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.4e-05 Score=74.15 Aligned_cols=159 Identities=9% Similarity=-0.020 Sum_probs=116.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC
Q 007818 385 IGGLALHGKALDAISYFSEMIGVGLMPD----------------EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK 448 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 448 (588)
...+.+.|++++|++.|..+.+...... ...+..+...|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456677888888888888776432211 124677889999999999999999998764332222
Q ss_pred h----HHHHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC-----
Q 007818 449 L----KHYSCMVDLLGRSGLLEEAEQLIRSMP-------MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELD----- 511 (588)
Q Consensus 449 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----- 511 (588)
. .+.+.+...+...|++++|.++++... ..+ ...++..++..+...|++++|...++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 223344455567789999999887651 223 35577888889999999999999999987542
Q ss_pred -CCCCchHHHHHHHHHccCChHHHHHHHHHHHh
Q 007818 512 -PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 512 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345788899999999999999999998864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-05 Score=65.07 Aligned_cols=133 Identities=15% Similarity=0.072 Sum_probs=84.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hH
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGL-MPDE----ITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LK 450 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 450 (588)
++..+...+...|++++|+..+++..+... .++. .++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 345555666666666766666666544210 0111 25666677777778888888777776553111111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-----C-CC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCC
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSMP-----M-AA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
.+..+...+...|++++|.+.+++.. . .+ ....+..+...+...|++++|...+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 56677777888888888888877652 1 11 234566677778888999999999988877544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.7e-05 Score=57.78 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...+..+...+...|++++|.+.+++.. ..| +...+..+...+...|++++|...++++++..|+++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4556666777777777777777776652 223 45667777777778888888888888888888888888888877776
Q ss_pred ccC
Q 007818 527 DSN 529 (588)
Q Consensus 527 ~~g 529 (588)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=75.51 Aligned_cols=112 Identities=9% Similarity=0.016 Sum_probs=81.1
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHhHHHHHHHHHHh
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAA-DVVVWGALFFACRL 493 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~ 493 (588)
.+..+...+.+.|++++|++.|+++.+.. +... .....+++. ...| +...+..+..++.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~------~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGA------KLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHG------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 45555666666667777776666665420 0000 000111110 0123 45678888889999
Q ss_pred hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 494 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.|++++|+..++++++++|+++.++..++.+|...|++++|++.++++.+..
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999998754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.02 E-value=3.8e-05 Score=75.55 Aligned_cols=97 Identities=11% Similarity=-0.079 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----------------HhHHHHHHHHHHhhCCHHHHHHHHHHHhccC
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD----------------VVVWGALFFACRLHGNVSIGERAAMKLLELD 511 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 511 (588)
...+..+...|.+.|++++|...|+++. ..|+ ...|..+..++.+.|++++|+..++++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3445555666666666666666666542 1121 5678888899999999999999999999999
Q ss_pred CCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 512 PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 512 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|+++.+|..++.+|...|++++|+..|+++.+..
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=4.6e-06 Score=66.76 Aligned_cols=96 Identities=9% Similarity=0.000 Sum_probs=64.7
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMK 506 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 506 (588)
+.+++|.+.++...+. -+.+...|..+..++...|+++.+.+.+ +.+++|+..+++
T Consensus 16 ~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al----------------------~~~~eAi~~le~ 71 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAK----------------------QMIQEAITKFEE 71 (158)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHH----------------------HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhH----------------------hHHHHHHHHHHH
Confidence 4455555555555542 1334555555555555555444333221 126789999999
Q ss_pred HhccCCCCCchHHHHHHHHHccC-----------ChHHHHHHHHHHHhcCC
Q 007818 507 LLELDPQDSGIYVLLANMYRDSN-----------MWEEAGKVRKMMEERGV 546 (588)
Q Consensus 507 ~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~ 546 (588)
+++++|+++.+|..++.+|...| ++++|++.|+++.+.+.
T Consensus 72 AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 72 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 99999999999999999998875 89999999999987653
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.6e-05 Score=59.40 Aligned_cols=67 Identities=10% Similarity=-0.111 Sum_probs=61.7
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
+...+..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|++.++++.+...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4567788888899999999999999999999999999999999999999999999999999987643
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.5e-05 Score=75.57 Aligned_cols=111 Identities=11% Similarity=-0.012 Sum_probs=87.9
Q ss_pred HHHHhcCChHHHHHHHHhCC---------CCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhc-----cCCCCCc---hH
Q 007818 457 DLLGRSGLLEEAEQLIRSMP---------MAAD-VVVWGALFFACRLHGNVSIGERAAMKLLE-----LDPQDSG---IY 518 (588)
Q Consensus 457 ~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~---~~ 518 (588)
..+..+|++++|+.++++.- ..|+ ..+++.++.+|...|++++|+.+++++++ +.|++|. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34668899999999987651 2243 45788899999999999999999999986 4566655 47
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHHHH
Q 007818 519 VLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLT 585 (588)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (588)
+.|+.+|..+|++++|..+++++.+--. ...|. +||.+.++..+|.+..
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~-----------------~~lG~-~Hp~~~~~~~~l~~~~ 445 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILL-----------------VTHGP-SHPITKDLEAMRMQTE 445 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------HHTCT-TSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH-----------------HHhCC-CChHHHHHHHHHHHHH
Confidence 8899999999999999999999976321 12333 5999999998888765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0002 Score=72.03 Aligned_cols=152 Identities=9% Similarity=0.000 Sum_probs=124.2
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhccCCc----------hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHH
Q 007818 392 GKALDAISYFSEMIGVGLMPD-EITFLGILSACCHGGL----------VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLG 460 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (588)
...++|++.++++... .|+ ...|+.--.++...|+ ++++.++++.+.+ ..+.+..+|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3457889999999985 454 4566665555555555 8999999999998 44567888998888999
Q ss_pred hcC--ChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhC-CHHHHHHHHHHHhccCCCCCchHHHHHHHHHcc-------
Q 007818 461 RSG--LLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHG-NVSIGERAAMKLLELDPQDSGIYVLLANMYRDS------- 528 (588)
Q Consensus 461 ~~g--~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 528 (588)
+.| +++++++.++++- ..| +...|..-.......| .++++++.+.++++.+|.|..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 7799999999883 344 6778888888888888 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHhcCCc
Q 007818 529 -------NMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 529 -------g~~~~A~~~~~~~~~~~~~ 547 (588)
+.+++|+++++++......
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5679999999998875543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.84 E-value=2.3e-05 Score=73.44 Aligned_cols=410 Identities=9% Similarity=-0.016 Sum_probs=248.8
Q ss_pred cCCchhhHHHHhhcccCCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHH
Q 007818 8 SHGFAPSRLIAFCAISESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFK 87 (588)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (588)
..+.+|+.|..++. ..|.+.+|+.-| ++..|+..|..+|.+..+.|.+++-+..+...++ . .-++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL--~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQL--QKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTT--TSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-T--CCSTTTTHHHHH
T ss_pred CCccHHHHHHHHHH--ccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H--hcccccHHHHHH
Confidence 35677888888888 778888888776 4466777888999999999999999988877665 3 334444557888
Q ss_pred HHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCC------------------------CC
Q 007818 88 VCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESC------------------------VR 143 (588)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------~~ 143 (588)
+|++.+++.+-.+++. .|+..-...+.+-|...|.++.|.-+|..+. ..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn 197 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 197 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999888776544432 3677667778888888888888888876531 24
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHH
Q 007818 144 NLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMD 223 (588)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 223 (588)
++.+|..+-.+|...+.+.-|.-.--.++- .|| ....++..|-..|-+++-..+++..... -.....+|+.|.-
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaI 271 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 271 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHH
Confidence 778899988899988888766555444432 222 2345667778888888888888766532 1245677888887
Q ss_pred HHHhcCChhHHHHHHHhcCCC-----------CcchHHHHHHHHHhcCCHHHHHHHhhhC-------------C--CCCc
Q 007818 224 MYVKCGKLESAEEIFDSMVNK-----------TVVSCTTMIVGYAKFGFLDIARKIFDDL-------------P--EKYV 277 (588)
Q Consensus 224 ~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------------~--~~~~ 277 (588)
.|++- ++++..+.++..-.+ ....|..++-.|.+-.+++.|....-.- . -.+.
T Consensus 272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~ 350 (624)
T 3lvg_A 272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANV 350 (624)
T ss_dssp HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCS
T ss_pred HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchH
Confidence 77765 566666666655322 4456888888888888888665432111 1 1233
Q ss_pred ccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHh----------CCCCcc
Q 007818 278 VPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKE----------NFNLNV 347 (588)
Q Consensus 278 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~ 347 (588)
..|...|..|.... |. ..+-++.++...=|...+.++++..-.. -...+.
T Consensus 351 EiyYKAi~FYL~e~------------------P~--lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~ 410 (624)
T 3lvg_A 351 ELYYRAIQFYLEFK------------------PL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNK 410 (624)
T ss_dssp HHHHHHHHHHTTSC------------------CT--TSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCH
T ss_pred HHHHHHHHHHHHhC------------------hH--HHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHH
Confidence 33444444443322 21 1222333332222222222222211000 001123
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCC------------CcchHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPER------------NSLTYTAI-IGGLALHGKALDAISYFSEMIGVGLMPDEI 414 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 414 (588)
.+-.++-+.|....+++.-..-.+....- +..-|..+ ...|.+++++.+++.+.++ ..
T Consensus 411 aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------Dk 481 (624)
T 3lvg_A 411 SVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DS 481 (624)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TC
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cc
Confidence 33445556677777766555544433221 22223222 3345666777776655421 12
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 007818 415 TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQL 471 (588)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 471 (588)
.|.-.+.....+|+.+-+.++++-..+. -+...|.+.+-.+...=+++-++++
T Consensus 482 lykDAietAa~S~~~elaeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 482 LYKDAMQYASESKDTELAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp CTTGGGTTTTTCCCTTHHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence 2333455566778888888888887775 3455666666666666667777766
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00025 Score=56.37 Aligned_cols=112 Identities=12% Similarity=-0.039 Sum_probs=93.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh----cCChHH
Q 007818 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR----SGLLEE 467 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 467 (588)
+++++|+..|++..+.| .|+.. +...|...+.+++|.++|++..+. -++.....|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46889999999999887 45544 677787878889999999999885 467778888888888 789999
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCC
Q 007818 468 AEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 512 (588)
|.++|++....-++.....+...|.. .+++++|...++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988655678888888888888 8899999999999998754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.83 E-value=6.8e-05 Score=54.50 Aligned_cols=66 Identities=24% Similarity=0.237 Sum_probs=60.5
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+...+..+...+...|++++|+..++++++..|+++.++..++.++...|++++|.+.++++.+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 355777788889999999999999999999999999999999999999999999999999998753
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=6.4e-05 Score=72.44 Aligned_cols=105 Identities=10% Similarity=0.011 Sum_probs=76.2
Q ss_pred hcCChHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhc-----cCCCCCc---hHHHHH
Q 007818 461 RSGLLEEAEQLIRSM---------PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLE-----LDPQDSG---IYVLLA 522 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~---~~~~l~ 522 (588)
..|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.+++++++ +.|++|. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346667777766654 11233 34677788888888888888888888875 4566555 488999
Q ss_pred HHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHH
Q 007818 523 NMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQ 583 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (588)
.+|..+|++++|..+++++.+--. ...|. +||.+.++.+.|++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~-----------------~~lG~-~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIME-----------------VAHGK-DHPYISEIKQEIES 432 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-----------------HHTCT-TCHHHHHHHHHHHC
T ss_pred HHHHhccCHHHHHHHHHHHHHHHH-----------------HHcCC-CChHHHHHHHHHhc
Confidence 999999999999999999976321 12333 59999999988764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.73 E-value=9.5e-05 Score=56.72 Aligned_cols=81 Identities=11% Similarity=0.009 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 007818 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLL 508 (588)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (588)
.|...++++.+ ..+.+...+..++..|...|++++|.+.+++.. ..| +...|..+..++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666665 233456677777777777777777777777652 233 45677777777788888888888888888
Q ss_pred ccCCC
Q 007818 509 ELDPQ 513 (588)
Q Consensus 509 ~~~p~ 513 (588)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=2.8e-05 Score=62.23 Aligned_cols=126 Identities=10% Similarity=-0.010 Sum_probs=85.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCch----------HHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLV----------DEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
..+.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++..+. -+.....|..+..
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 345677999999999998864 55677888888888888765 4788888887764 1234667777777
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHH
Q 007818 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (588)
+|...|.+ .|+.. ...|++++|+..|+++++++|++......+- ..++|-++
T Consensus 89 ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el 140 (158)
T 1zu2_A 89 AYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQL 140 (158)
T ss_dssp HHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHH
T ss_pred HHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhc
Confidence 77766643 33331 1137899999999999999998753333322 23445555
Q ss_pred HHHHHhc
Q 007818 538 RKMMEER 544 (588)
Q Consensus 538 ~~~~~~~ 544 (588)
.-.+...
T Consensus 141 ~~~~~~~ 147 (158)
T 1zu2_A 141 HAEAYKQ 147 (158)
T ss_dssp HHHHHHS
T ss_pred cCccccc
Confidence 5544443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0003 Score=67.91 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=86.1
Q ss_pred HHHHHhcCChHHHHHHHHhCC------CCC---C-HhHHHHHHHHHHhhCCHHHHHHHHHHHhc-----cCCCCCc---h
Q 007818 456 VDLLGRSGLLEEAEQLIRSMP------MAA---D-VVVWGALFFACRLHGNVSIGERAAMKLLE-----LDPQDSG---I 517 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~------~~~---~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~---~ 517 (588)
+..+.+.|++++|++++++.- ..| + ..+++.++.+|...|++++|+.+++++++ +.|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444667889999988887651 112 2 44778888889999999999999999885 3466655 4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhcCCccCCceeEEEECCEEEEEecCCCCCcchHHHHHHHHHHHh
Q 007818 518 YVLLANMYRDSNMWEEAGKVRKMMEERGVEKTPGCSSIEVNGLLYEFIVRDKSHPELEQIYDCLVQLTR 586 (588)
Q Consensus 518 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (588)
++.|+.+|..+|++++|..+++++.+--. ...|. +||...+++..|.+...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-----------------~~lG~-~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-----------------VTHGR-EHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------HHTCT-TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------------HhcCC-CChHHHHHHHHHHHHHH
Confidence 78899999999999999999999976311 12333 59999999998887653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00017 Score=53.46 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=52.0
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CHh-HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCCh
Q 007818 455 MVDLLGRSGLLEEAEQLIRSMP-MAA-DVV-VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMW 531 (588)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 531 (588)
.+..+.+.|++++|.+.++++. ..| +.. .+..+..++...|++++|+..++++++++|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4556667777778777777652 233 455 66777777777778888888888887777777666532 444
Q ss_pred HHHHHHHHHH
Q 007818 532 EEAGKVRKMM 541 (588)
Q Consensus 532 ~~A~~~~~~~ 541 (588)
.++...+++.
T Consensus 78 ~~a~~~~~~~ 87 (99)
T 2kc7_A 78 MDILNFYNKD 87 (99)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00012 Score=54.34 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=38.6
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCCc-hHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQDSG-IYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
...+...|++++|+..++++++..|+++. ++..++.+|...|++++|.+.++++.+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34455666777777777777777776666 66667777777777777777776666543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.30 E-value=9e-06 Score=76.12 Aligned_cols=261 Identities=11% Similarity=0.043 Sum_probs=157.7
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhc
Q 007818 113 DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ 192 (588)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 192 (588)
.+.+|..|..+..+.+.+.+|++-|-+ ..|+..|..++....+.|.++.-+..+...++.. -++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 455777788888888877777765543 3466778888888889999998888887666553 233444578888888
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhC
Q 007818 193 LEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDL 272 (588)
Q Consensus 193 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 272 (588)
.++..+.++++ -.|+..-...+.+-|...|.++.|.-+|..+..- ..|..++.+.|++..|.+.-+.
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~-----akLAstLV~L~~yq~AVdaArK- 195 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF-----GRLASTLVHLGEYQAAVDGARK- 195 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC-----TTTSSSSSSCSGGGSSTTTTTT-
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccH-----HHHHHHHHHHHHHHHHHHHHHh-
Confidence 88877665554 2466666678888888888888888887776331 1122223333333333222211
Q ss_pred CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHH
Q 007818 273 PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTA 352 (588)
Q Consensus 273 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 352 (588)
..++.+|-.+..+|...+.+.-|.-.--.++- .|| .+..++..|...|.+++-+.+++.-... -.....+|+.
T Consensus 196 -Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTE 268 (624)
T 3lvg_A 196 -ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTE 268 (624)
T ss_dssp -CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHH
T ss_pred -cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHH
Confidence 24566677777777777776655444333332 121 1223444556666666666666554421 1335556666
Q ss_pred HHHHhHhcCChhHHHHHhccCCC----C-------CcchHHHHHHHHHhcCChHHHH
Q 007818 353 LVDMYAKCGNIAKALQVFHEMPE----R-------NSLTYTAIIGGLALHGKALDAI 398 (588)
Q Consensus 353 l~~~~~~~~~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~ 398 (588)
|.-.|++- ++++..+.++..-. | ....|.-++-.|.+-.+++.|.
T Consensus 269 LaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 269 LAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 66666654 45555555554332 1 3445666666666666666553
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00096 Score=64.28 Aligned_cols=95 Identities=14% Similarity=-0.027 Sum_probs=69.1
Q ss_pred cCCchHHHHHHHHHhhhhc--CCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HhHHHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIF--RLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSM---------PMAAD-VVVWGALF 488 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~ 488 (588)
..|++++|+.++++..+.. -+.|+ ..+++.|+.+|...|++++|+.++++. +..|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467888888887765531 12222 467788888888899999888888776 12344 44788888
Q ss_pred HHHHhhCCHHHHHHHHHHHhc-----cCCCCCchHH
Q 007818 489 FACRLHGNVSIGERAAMKLLE-----LDPQDSGIYV 519 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~ 519 (588)
..|..+|++++|+.+++++++ ++|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 889999999999999999876 5687776544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00079 Score=49.88 Aligned_cols=63 Identities=17% Similarity=0.102 Sum_probs=34.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhh
Q 007818 378 SLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441 (588)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 441 (588)
...+..+...|...|++++|+..|++..+.. +.+...|..+..++...|++++|.+.+++..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555666666666666555542 22334555555555566666666666555544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0095 Score=54.98 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=33.7
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
++..+..+...+...|++++|...++++++++| +...|..+++++.-.|++++|.+.++++...
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 344444444444445555555555555555554 3344445555555555555555555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0022 Score=59.13 Aligned_cols=139 Identities=14% Similarity=0.051 Sum_probs=97.4
Q ss_pred CCCcchHHHHHHHHH--hcCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcc---CC-ch-HHH---HHHHHHhh
Q 007818 375 ERNSLTYTAIIGGLA--LHGK---ALDAISYFSEMIGVGLMPDE-ITFLGILSACCH---GG-LV-DEG---RKYFAQMS 440 (588)
Q Consensus 375 ~~~~~~~~~l~~~~~--~~~~---~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~~-~~-~~a---~~~~~~~~ 440 (588)
..+...|...+++.. ..++ ..+|..+|++.++. .|+. ..+..+..++.- .+ .. ... .+.++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 347788888876643 3333 57899999999985 5653 456655555542 11 11 111 11222221
Q ss_pred hhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 441 SIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
.....+.++..|..+...+...|++++|...++++ ...|+...|..+...+...|+.++|...+++++.++|..+
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 11133667888888888888889999999999987 3568888888888889999999999999999999999654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0022 Score=61.84 Aligned_cols=101 Identities=18% Similarity=-0.030 Sum_probs=71.9
Q ss_pred HHHhccCCchHHHHHHHHHhhhhc--CCCCC----hHHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCC-HhH
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIF--RLSPK----LKHYSCMVDLLGRSGLLEEAEQLIRSMP---------MAAD-VVV 483 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~ 483 (588)
+..+.+.|++++|+.++++..+.. -+.|+ ..+++.++.+|...|++++|+.+++++- ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556678888888888776431 12222 4667788888888888888888887651 2343 446
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhc-----cCCCCCchHHH
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLE-----LDPQDSGIYVL 520 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~p~~~~~~~~ 520 (588)
++.+...|...|++++|+.+++++++ ++|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 78888889999999999999998875 56888766544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0023 Score=56.48 Aligned_cols=86 Identities=13% Similarity=0.048 Sum_probs=67.0
Q ss_pred HHHHHHHHhC-CCCCC---HhHHHHHHHHHHh-----hCCHHHHHHHHHHHhccCCCC-CchHHHHHHHHHcc-CChHHH
Q 007818 466 EEAEQLIRSM-PMAAD---VVVWGALFFACRL-----HGNVSIGERAAMKLLELDPQD-SGIYVLLANMYRDS-NMWEEA 534 (588)
Q Consensus 466 ~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 534 (588)
.+|...+++. ...|+ ...+..+...|.. .|+.++|.+.|+++++++|+. ..++..++..+++. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4555555554 34554 4466666666766 489999999999999999974 99999999999885 999999
Q ss_pred HHHHHHHHhcCCccCCc
Q 007818 535 GKVRKMMEERGVEKTPG 551 (588)
Q Consensus 535 ~~~~~~~~~~~~~~~~~ 551 (588)
.+++++..+.+....|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999999987774454
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0048 Score=45.94 Aligned_cols=75 Identities=19% Similarity=0.115 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchH
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMP---------MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIY 518 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 518 (588)
+......++..+.+.|++..|...++.+. ..+....+..+..++.+.|+++.|...+++++++.|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 33444556666667777777766666541 113456778888889999999999999999999999988876
Q ss_pred HHHH
Q 007818 519 VLLA 522 (588)
Q Consensus 519 ~~l~ 522 (588)
..+.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 6664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.033 Score=42.14 Aligned_cols=142 Identities=12% Similarity=0.038 Sum_probs=98.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
+...|..++..++..+.... .+..-++.++--....-+=+-..++++.+-+-+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 44567778888887777663 34555666665555555555556666665443221 23455555
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 468 AEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
....+-.+. .+...+...+.....+|..++-..++..++...|.+|..+..++.+|.+.|+..+|.+++.++-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555544442 234455556677789999999999999988777778999999999999999999999999999999976
Q ss_pred c
Q 007818 548 K 548 (588)
Q Consensus 548 ~ 548 (588)
.
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0023 Score=50.51 Aligned_cols=92 Identities=14% Similarity=-0.058 Sum_probs=69.7
Q ss_pred CchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC---ChHHHHHHHHhCC-CC-C--CHhHHHHHHHHHHhhCCHHH
Q 007818 427 GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG---LLEEAEQLIRSMP-MA-A--DVVVWGALFFACRLHGNVSI 499 (588)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~~~~~~ 499 (588)
+....+++-|.+.... + +++..+...+..++++.+ +.+++..++++.- .. | ....+-.+.-++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 4566777777777663 3 478888888899999988 6668998888762 23 4 34566667777899999999
Q ss_pred HHHHHHHHhccCCCCCchHHH
Q 007818 500 GERAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 500 A~~~~~~~~~~~p~~~~~~~~ 520 (588)
|.+.++.+++.+|+|..+...
T Consensus 90 A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999987655543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0041 Score=49.13 Aligned_cols=77 Identities=12% Similarity=-0.003 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC---chHHHHHHHHHhhhhcCCCC--ChHHHHHHHHHHHhcCChHHHHH
Q 007818 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGG---LVDEGRKYFAQMSSIFRLSP--KLKHYSCMVDLLGRSGLLEEAEQ 470 (588)
Q Consensus 396 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 470 (588)
.+.+.|.+..+.| .++..+...+..++++++ +.++++.+++.+.+. . .| ....+..|.-+|.+.|++++|.+
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3344444444433 244444444444455444 344555555555443 1 12 23334444445555555555555
Q ss_pred HHHhC
Q 007818 471 LIRSM 475 (588)
Q Consensus 471 ~~~~~ 475 (588)
+++.+
T Consensus 93 y~~~l 97 (152)
T 1pc2_A 93 YVRGL 97 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0053 Score=45.70 Aligned_cols=66 Identities=11% Similarity=-0.128 Sum_probs=55.8
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccC-------CCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELD-------PQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
++.....++..+...|++..|+..++++++.. +..+.++..|+.+|.+.|++++|+.+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34455678888999999999999999998753 3356679999999999999999999999998754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.086 Score=56.02 Aligned_cols=188 Identities=9% Similarity=0.009 Sum_probs=109.8
Q ss_pred HHhcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhH
Q 007818 287 YVQAKRSKEALA-LFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAK 365 (588)
Q Consensus 287 ~~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 365 (588)
....+++++|.+ ++.. + |+......++..+.+.|..+.|.++.+. . ..-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHH
Confidence 345667777665 4411 1 1122225555666667777777665421 1 111334567789999
Q ss_pred HHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCC
Q 007818 366 ALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445 (588)
Q Consensus 366 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (588)
|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+..... +
T Consensus 671 A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~- 737 (814)
T 3mkq_A 671 ARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G- 737 (814)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T-
T ss_pred HHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C-
Confidence 999887764 457889999999999999999999887643 333444444466666655555544442 1
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC---CchHHHHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD---SGIYVLLA 522 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 522 (588)
+ ++.-..+|.+.|++++|.+++.++ +++++|..+.++ ..|.. +.+...+.
T Consensus 738 --~---~~~A~~~~~~~g~~~~a~~~~~~~-------------------~~~~~A~~lA~~---~~~~~~~i~~~~~~~~ 790 (814)
T 3mkq_A 738 --K---FNLAFNAYWIAGDIQGAKDLLIKS-------------------QRFSEAAFLGST---YGLGDNEVNDIVTKWK 790 (814)
T ss_dssp --C---HHHHHHHHHHHTCHHHHHHHHHHT-------------------TCHHHHHHHHHH---TTCCHHHHHHHHHHHH
T ss_pred --c---hHHHHHHHHHcCCHHHHHHHHHHc-------------------CChHHHHHHHHH---hCCChHHHHHHHHHHH
Confidence 1 233344566677777777766544 456666665543 33322 13444455
Q ss_pred HHHHccCChH
Q 007818 523 NMYRDSNMWE 532 (588)
Q Consensus 523 ~~~~~~g~~~ 532 (588)
..+...|+.+
T Consensus 791 ~~L~~~~~~~ 800 (814)
T 3mkq_A 791 ENLILNGKNT 800 (814)
T ss_dssp HHHHTTTCHH
T ss_pred HHHHhccchh
Confidence 5555566543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.019 Score=41.45 Aligned_cols=70 Identities=7% Similarity=-0.020 Sum_probs=52.7
Q ss_pred CCChHHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 446 SPKLKHYSCMVDLLGRSGL---LEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
+.++..+..+..++...++ .++|..++++. ...| ++..+..+...+.+.|++++|+..|+++++..|.++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4567777777777765444 68888888876 3445 566777777788889999999999999999988743
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.041 Score=58.52 Aligned_cols=155 Identities=12% Similarity=0.141 Sum_probs=99.9
Q ss_pred HHHHHhCCChHHHHH-HHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCC
Q 007818 50 IRGFLETGKMREAVD-LYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCG 128 (588)
Q Consensus 50 ~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (588)
.......+++++|.+ ++..+. +......++..+.+.|..+.|.++.+... .-.......|
T Consensus 606 ~~~~~~~~~~~~a~~~~l~~i~-------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~ 666 (814)
T 3mkq_A 606 FQTLTLRGEIEEAIENVLPNVE-------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVG 666 (814)
T ss_dssp HHHHHHTTCHHHHHHHTGGGCC-------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHT
T ss_pred HhHHHHhCCHHHHHHHHHhcCC-------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcC
Confidence 344556788888876 542221 11223667777778888888876653211 1134456789
Q ss_pred ChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH
Q 007818 129 DLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISE 208 (588)
Q Consensus 129 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 208 (588)
+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+....+.+....
T Consensus 667 ~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 667 QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999988774 567899999999999999999999998753 34455555556666665555554444
Q ss_pred hCCCCChhhHHHHHHHHHhcCChhHHHHHHHh
Q 007818 209 SGLTLTVPLANALMDMYVKCGKLESAEEIFDS 240 (588)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 240 (588)
.|. ++....+|.+.|++++|.+++.+
T Consensus 736 ~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 736 TGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 432 23344455556666666655544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.93 Score=45.63 Aligned_cols=114 Identities=12% Similarity=-0.043 Sum_probs=66.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 392 GKALDAISYFSEMIGVGLMPDEI----TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
++++.|...+....+.. ..+.. ....+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888776533 22332 2333343444555345666666654432 2333334444455557788888
Q ss_pred HHHHHHhCCCCC-C-HhHHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 468 AEQLIRSMPMAA-D-VVVWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 468 A~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
|...|+.++..+ + ....-=+..+....|+.++|..+++++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888886442 1 22111233355677888888888888875
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.069 Score=40.46 Aligned_cols=90 Identities=13% Similarity=-0.037 Sum_probs=58.4
Q ss_pred hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH---HHHHHHhCC-CC-C--CHhHHHHHHHHHHhhCCHHHHH
Q 007818 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE---AEQLIRSMP-MA-A--DVVVWGALFFACRLHGNVSIGE 501 (588)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~~~~~~A~ 501 (588)
...+.+-+...... + .++..+-..+..++++..+... ++.+++.+- .. | .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455555555443 3 2666666667777777766555 667776653 22 3 2234445556688899999999
Q ss_pred HHHHHHhccCCCCCchHHH
Q 007818 502 RAAMKLLELDPQDSGIYVL 520 (588)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~~ 520 (588)
+.++.+++..|+|..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999988766543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.22 Score=40.44 Aligned_cols=125 Identities=14% Similarity=0.039 Sum_probs=88.5
Q ss_pred CCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHH
Q 007818 24 ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 103 (588)
..|+++.|.++.+.+ .+...|..|.+...++|+++-|.+.|.+... +..+.-.|...|+.++..++-+
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHHHHHH
Confidence 678999999987765 4677899999999999999999999988754 5666666777888887777666
Q ss_pred HHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHh
Q 007818 104 HVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171 (588)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 171 (588)
.....| -++.....+...|+++++.++|.+.... ....-.....|..+.|.++.+++
T Consensus 85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~-----~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSL-----PLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCH-----HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCCh-----HHHHHHHHHcCcHHHHHHHHHHh
Confidence 666655 2455556666788999988888765431 11112222356666777776665
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.5 Score=38.30 Aligned_cols=77 Identities=13% Similarity=0.183 Sum_probs=45.1
Q ss_pred HHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 007818 223 DMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302 (588)
Q Consensus 223 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 302 (588)
......|+++.|.++.+.+ .+...|..+.......|+++-|+++|....+ +..+.-.|...|+.+...++-+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445667777776666655 3445566666666666666666666665544 45555555566666555555444
Q ss_pred HHHC
Q 007818 303 MQAT 306 (588)
Q Consensus 303 ~~~~ 306 (588)
....
T Consensus 86 A~~~ 89 (177)
T 3mkq_B 86 AQTR 89 (177)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 4443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=95.64 E-value=1.2 Score=40.16 Aligned_cols=189 Identities=11% Similarity=0.064 Sum_probs=114.2
Q ss_pred hhhHHHHHHHHHHhcCCC-ChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHH----HH
Q 007818 95 RFLGYEIFGHVLKLGFDV-DMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRL----FR 169 (588)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~ 169 (588)
+++...-++.-++.|--- -...|.++..-|.+.+++++|++++... ...+.+.|+...|-++ ++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHH
Confidence 344444444444444111 1235666677788899999999887653 3445666777666654 45
Q ss_pred HhHHCCCCCCcchHHHHHHHHhccCChh-HHHHHHHHHH----HhCC--CCChhhHHHHHHHHHhcCChhHHHHHHHhcC
Q 007818 170 DMQLERVEPDEVTMIGMVSACAQLEDLN-LGREIHWYIS----ESGL--TLTVPLANALMDMYVKCGKLESAEEIFDSMV 242 (588)
Q Consensus 170 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 242 (588)
-..+.+++++......++..+.....-+ .-.++++.++ +.|- .-++..+..+...|.+.|++.+|...|-.-.
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~ 161 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT 161 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence 5566788888888888887776643211 2233444443 3332 2367888999999999999999998887433
Q ss_pred CCCcchHHHHHHHHHhc---CCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007818 243 NKTVVSCTTMIVGYAKF---GFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305 (588)
Q Consensus 243 ~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 305 (588)
..++..+..++.-+... |...++.-.. ...+-.|...++...|..+++...+
T Consensus 162 ~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~-----------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 162 HDSMIKYVDLLWDWLCQVDDIEDSTVAEFF-----------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHH-----------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhcCCCCcchHHHHH-----------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33556666665555544 4443332221 1223345566777777777776543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.16 Score=39.52 Aligned_cols=61 Identities=11% Similarity=-0.013 Sum_probs=39.3
Q ss_pred hcCChHHHHHHHHhCC---CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHH
Q 007818 461 RSGLLEEAEQLIRSMP---MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLA 522 (588)
Q Consensus 461 ~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 522 (588)
..++.++|.++|+.+. .+. +..|.....--.++|+...|.+++.+++...|.+...+...+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 3366667777766651 122 555555555566788888888888888888886554444433
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.47 E-value=3.1 Score=43.75 Aligned_cols=163 Identities=12% Similarity=-0.000 Sum_probs=72.5
Q ss_pred HcccCChhHHHHHHHHHHHhCCCCcchHHH--HHHHHhHhcCChhHHHHHhccCCC-CCcc-hHH---HHHHHHHhcCCh
Q 007818 322 CSQLGALDDGIWIHRFIEKENFNLNVVLGT--ALVDMYAKCGNIAKALQVFHEMPE-RNSL-TYT---AIIGGLALHGKA 394 (588)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~ 394 (588)
+...|+.+....++..+.+.. +..+.. .+.-++...|+.+.+..+++.+.. .++. -|. ++.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH
Confidence 345555555556655554321 112222 222233345666666555555442 2221 122 233445566666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCCh-HHHHHHHH
Q 007818 395 LDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL-EEAEQLIR 473 (588)
Q Consensus 395 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~ 473 (588)
....++++.+.... ..+......+.-++...|+.+.+.++++.+.+ ...|....-..+.-+....|.. .++.+.+.
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 55555666665531 11222222222233344555555555555544 2234333333344444444433 45666666
Q ss_pred hCCCCCCHhHHHHHHHH
Q 007818 474 SMPMAADVVVWGALFFA 490 (588)
Q Consensus 474 ~~~~~~~~~~~~~l~~~ 490 (588)
.+...++..+-...+.+
T Consensus 654 ~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 654 PLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp HHHTCSSHHHHHHHHHH
T ss_pred HHccCCCHHHHHHHHHH
Confidence 66544554444333333
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.071 Score=54.63 Aligned_cols=54 Identities=15% Similarity=-0.021 Sum_probs=50.2
Q ss_pred HHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 488 FFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 488 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
..-|...|+++.|..+.++++...|.+-.+|..|+.+|...|+|+.|+-.++-+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 444678899999999999999999999999999999999999999999999877
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.34 E-value=3.4 Score=43.46 Aligned_cols=149 Identities=13% Similarity=0.005 Sum_probs=68.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHhccCCchHHHHHHHHHhhhhcCCCCChHHHH--HHHHHHHhcC
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGIL--SACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYS--CMVDLLGRSG 463 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g 463 (588)
+.-.|+.+....++..+.+. .+......+. -++...|+.+.+..+.+.+... ..|....-. .+.-+|+-.|
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSC
T ss_pred hcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCC
Confidence 44455655555566655542 1222222222 2333556666666666666552 222222221 2334555666
Q ss_pred ChHHHHHHHHhCCCCCCHhHHHHHHHHH--HhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH--HccCC-hHHHHHHH
Q 007818 464 LLEEAEQLIRSMPMAADVVVWGALFFAC--RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY--RDSNM-WEEAGKVR 538 (588)
Q Consensus 464 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~-~~~A~~~~ 538 (588)
+.....+++..+...++...-...+-+. ...|+.+.+.++++.+.+.. |+.+-...+.++ ...|+ ..+|...+
T Consensus 575 n~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 7666655666664333333333332222 23444444444443333221 333333322222 22333 25777777
Q ss_pred HHHHh
Q 007818 539 KMMEE 543 (588)
Q Consensus 539 ~~~~~ 543 (588)
..+..
T Consensus 653 ~~L~~ 657 (963)
T 4ady_A 653 DPLTK 657 (963)
T ss_dssp HHHHT
T ss_pred HHHcc
Confidence 77754
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.049 Score=41.30 Aligned_cols=68 Identities=12% Similarity=-0.075 Sum_probs=57.0
Q ss_pred CCCHhHHHHHHHHHHhhCCHHH---HHHHHHHHhccC-C-CCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 478 AADVVVWGALFFACRLHGNVSI---GERAAMKLLELD-P-QDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 478 ~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.++..+-..+.+++.+.++... ++.+++.+++.. | .....+..|+-++.+.|+|++|+++++.+.+..
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE 104 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 4777788888888887776554 999999999887 5 466788899999999999999999999998753
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=94.98 E-value=2 Score=38.94 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=104.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHH----HHhHHCCCCCCcchHHHHHHHHh
Q 007818 116 VHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLF----RDMQLERVEPDEVTMIGMVSACA 191 (588)
Q Consensus 116 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~ 191 (588)
++.++..-|.+.+++++|++++-.. ...+.+.|+...+.++- +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556666788899999999887553 34456667776665554 55566788888888888888777
Q ss_pred ccCChh-HHHHHHHHH----HHhC--CCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHH
Q 007818 192 QLEDLN-LGREIHWYI----SESG--LTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDI 264 (588)
Q Consensus 192 ~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 264 (588)
....-+ .-..+++.+ .+.| ..-++.....+...|.+.+++.+|...|-.-.++++..+..++..+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655322 222333333 3334 334678888999999999999999988843222233566555555544433222
Q ss_pred HHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007818 265 ARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQA 305 (588)
Q Consensus 265 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 305 (588)
+--. ....+-.|...++...|...++...+
T Consensus 186 ~dlf-----------iaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 APLY-----------CARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHH-----------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH-----------HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2111 22233446667788888776666543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.85 Score=34.71 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=41.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCC
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (588)
.+..-++.+..+|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-++ |+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 3444556666677777777777665442 3666777777777777777777777777777665 44
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.19 Score=39.09 Aligned_cols=56 Identities=7% Similarity=-0.108 Sum_probs=46.6
Q ss_pred hhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCcc
Q 007818 493 LHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVEK 548 (588)
Q Consensus 493 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 548 (588)
..+|.++|.++|+.++++...=+.+|...+..-.++|+.+.|.+++.+....+..|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 44799999999999988755456778888888889999999999999998876544
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.3 Score=37.69 Aligned_cols=74 Identities=14% Similarity=0.086 Sum_probs=45.7
Q ss_pred CCChHHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLLE---EAEQLIRSM-PMAA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
.|+..+--.+..++.++.+.. ++..+++++ ...| .....-.+.-++.+.|++++|.+..+.+++.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 466666666777777776543 455666654 1223 2333444455677777888888888888887777654443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.57 E-value=0.2 Score=38.15 Aligned_cols=74 Identities=14% Similarity=0.083 Sum_probs=44.9
Q ss_pred CCChHHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 446 SPKLKHYSCMVDLLGRSGLL---EEAEQLIRSM-PMAA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
.|++.+--.++.++.++.+. .+++.+++++ ...| ....+--+.-++.+.|++++|.+..+.+++..|+|..+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 35566656667777766644 3455665554 1223 2334445555677777777777777777777777655443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.23 Score=47.12 Aligned_cols=69 Identities=17% Similarity=0.069 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH-----hcCCccCCce
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME-----ERGVEKTPGC 552 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 552 (588)
...++.++...|++.+++..+..++..+|-+...+..++.+|.+.|+..+|++.|+++. +.|++|.+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34455666788999999999999999999988899999999999999999999988874 3577776654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.64 Score=41.17 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=39.9
Q ss_pred hHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhcc-CCchHHHHHHHHHhhhh
Q 007818 380 TYTAIIGGLAL-----HGKALDAISYFSEMIGVGLMP--DEITFLGILSACCH-GGLVDEGRKYFAQMSSI 442 (588)
Q Consensus 380 ~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 442 (588)
.|..+...|.+ -|+.++|.+.|++.++. .| +..++......++. .|+.+++.+.+++....
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 55556666665 37777777777777764 44 25566666666666 37777777777777764
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.62 E-value=2.6 Score=32.58 Aligned_cols=66 Identities=8% Similarity=-0.024 Sum_probs=37.4
Q ss_pred CCHhHHHHHHHHHHhhCC---HHHHHHHHHHHhccCCC-CCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 479 ADVVVWGALFFACRLHGN---VSIGERAAMKLLELDPQ-DSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 479 ~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
|+..+-..+.+++.+..+ ..+++.+++.+++..|. ....+..|+-++.+.|+|++|+++.+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 455555555555554443 34556666666665553 3445555666666666666666666666553
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=91.54 E-value=1.1 Score=34.10 Aligned_cols=65 Identities=8% Similarity=-0.060 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHhccCC---chHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 410 MPDEITFLGILSACCHGG---LVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 410 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
.|+..+--.+..++.++. +..+++.+++.+.+. +..-....+..|.-++.+.|++++|+++.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444444444444433 223455555555543 21112334444555555555555555555544
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.52 E-value=7.9 Score=35.15 Aligned_cols=168 Identities=13% Similarity=0.089 Sum_probs=103.6
Q ss_pred HHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhc
Q 007818 349 LGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYF----SEMIGVGLMPDEITFLGILSACC 424 (588)
Q Consensus 349 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~p~~~~~~~l~~~~~ 424 (588)
+|.++..-|.+.+++++|.+++-. -...+.+.|+...|..+. +-+.+.++++|......++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 445666668888888888887533 233455667765554443 55666788888888888877776
Q ss_pred cCCchH-HHHHHHHHhhh---hcC--CCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHH
Q 007818 425 HGGLVD-EGRKYFAQMSS---IFR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVS 498 (588)
Q Consensus 425 ~~~~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 498 (588)
....-+ .=..+.+++.+ +.+ -.-++.....+...|.+.|++.+|+..|= ...++.+..+..++..+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 554311 11222222221 112 23457778889999999999999999884 2333444666666555544433
Q ss_pred HHHHHHHHHhccCCCCCchHH-HHHHHHHccCChHHHHHHHHHHHh
Q 007818 499 IGERAAMKLLELDPQDSGIYV-LLANMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 499 ~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 543 (588)
|.....|. ..+--|.-.|+...|...++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22222222 234456778999999998877764
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.27 E-value=1.1 Score=35.67 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=66.7
Q ss_pred CCCCCHH--HHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-------hHHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 007818 408 GLMPDEI--TFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-------LKHYSCMVDLLGRSGLLEEAEQLIRSMP-- 476 (588)
Q Consensus 408 ~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 476 (588)
|+.|... ++..-+..+...|.++.|+-+.+.+....+..|+ ..++..+++++...|++.+|...|++.-
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4445443 3444466677788888888887776554333344 2355667788888888888888887641
Q ss_pred -----CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHH
Q 007818 477 -----MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541 (588)
Q Consensus 477 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 541 (588)
..+...+ .+ .. ..... .-..+ +.+...-..++.+|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~~~--~~-~~---~ss~p-------~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRP--ST-GN---SASTP-------QSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCccc--cc-cc---cCCCc-------ccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 0111100 00 00 00000 00111 223456677999999999999999999876
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.01 E-value=9.2 Score=35.87 Aligned_cols=57 Identities=9% Similarity=-0.095 Sum_probs=25.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC--H---HHHHHHHHHhccCCchHHHHHHHHHhh
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPD--E---ITFLGILSACCHGGLVDEGRKYFAQMS 440 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~--~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 440 (588)
++..|...|++.+|.+++.++.+.=-..| . ..+..-++.|...+++.++...+....
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44555555555555555555443200111 1 123333444455555555555555543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.71 E-value=1.2 Score=35.41 Aligned_cols=29 Identities=7% Similarity=0.023 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMPMA 478 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 478 (588)
+.-..+..+|.+.|++++|+.+++.++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 34445666777777777777777776543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.47 E-value=13 Score=35.77 Aligned_cols=34 Identities=6% Similarity=0.092 Sum_probs=23.4
Q ss_pred CCcchHHHHHHHHhHhc--CChhHHHHHhccCCCCC
Q 007818 344 NLNVVLGTALVDMYAKC--GNIAKALQVFHEMPERN 377 (588)
Q Consensus 344 ~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~ 377 (588)
.++...+..++.+|... .++..+.+.|.....++
T Consensus 290 ~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 290 LKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred ccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 34566778888888754 46778888887766543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.18 E-value=1.3 Score=31.65 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
+.-+..+-++.+....+-|++......+++|-+.+++..|.++++.++.+-+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4456777778888888899999999999999999999999999999988533 33456766664
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.56 E-value=7.8 Score=33.75 Aligned_cols=55 Identities=15% Similarity=0.172 Sum_probs=35.0
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhh
Q 007818 387 GLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSI 442 (588)
Q Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 442 (588)
...+.|+.+++++....-++.. +-|...-..+++.+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3455667777777766666653 445555556666777777777777766666543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.46 E-value=11 Score=41.40 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=22.7
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHH
Q 007818 252 MIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHE 302 (588)
Q Consensus 252 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 302 (588)
++..+...+..+.+.++..-... ++..--.+..+|...|++++|.+.|++
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~k 867 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKT 867 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34444445555555444433322 222223334445555555555555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.62 E-value=4.1 Score=41.90 Aligned_cols=52 Identities=13% Similarity=0.016 Sum_probs=38.7
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP 476 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 476 (588)
|...|+++-|.++-++... -.+.+..+|..|+.+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4457788888888877775 334457788888888888888888888887775
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.32 E-value=16 Score=32.85 Aligned_cols=171 Identities=10% Similarity=0.003 Sum_probs=104.6
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHh
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAIS----YFSEMIGVGLMPDEITFLGILSAC 423 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~p~~~~~~~l~~~~ 423 (588)
..|.++..-|.+.+++++|.+++.. -...+.+.|+...|-. +++...+.+.+++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3456677778888999999887543 2344566777666555 455666778889988888888776
Q ss_pred ccCCchH-HHHHHHHHhhhh---cC--CCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhh---
Q 007818 424 CHGGLVD-EGRKYFAQMSSI---FR--LSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLH--- 494 (588)
Q Consensus 424 ~~~~~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~--- 494 (588)
.....-+ .=.++++++.+- .+ ..-++.....+...|.+.|++.+|+..|-.. ..-+...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~ 181 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDD 181 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCC
Confidence 5532111 112333333211 12 2236788888999999999999999988532 111355555555554444
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
|...++--.+- ..+--|.-.|+...|..+++...+.
T Consensus 182 ~~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 182 IEDSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CCHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 43333222211 2233456789999999999887543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.64 E-value=34 Score=37.63 Aligned_cols=153 Identities=8% Similarity=-0.009 Sum_probs=72.6
Q ss_pred CCCChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHH
Q 007818 24 ESKNLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFG 103 (588)
Q Consensus 24 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 103 (588)
+.+.++.++.+....+ .++..-..+.+++...|++++|.+.|++... |+..+......+ .. +.
T Consensus 824 ~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~----------~~----~~ 886 (1139)
T 4fhn_B 824 LFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVL----------RE----FQ 886 (1139)
T ss_dssp HHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSH----------HH----HH
T ss_pred HhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhh----------cc----cc
Confidence 4455555555443333 2444444566677777777777777766532 222221110000 00 00
Q ss_pred HHHHhcC--CCChhHHHHHHHHHHhCCChhHHHHHhcc----CCCCCc----ccHHHHHHHHHhCCChhHHHHHHHHhHH
Q 007818 104 HVLKLGF--DVDMYVHNAVIHVFVSCGDLGLACNVFDE----SCVRNL----VSWNSLINGFVRSGFPREAIRLFRDMQL 173 (588)
Q Consensus 104 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 173 (588)
.+..... ..-..-|..++..+.+.+.++.+.+.-.. ..+.+. ..|..+.+.+...|++++|...+-.+..
T Consensus 887 ~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 887 EIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 0111000 01112345555566666665555544322 111111 2466667777777777777777766654
Q ss_pred CCCCCCcchHHHHHHHHhccCC
Q 007818 174 ERVEPDEVTMIGMVSACAQLED 195 (588)
Q Consensus 174 ~~~~p~~~~~~~ll~~~~~~~~ 195 (588)
... -...+..++..++..|.
T Consensus 967 ~~~--r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 967 TPL--KKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp SSS--CHHHHHHHHHHHHHHCC
T ss_pred HHH--HHHHHHHHHHHHHhCCC
Confidence 422 23445555555554443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=86.33 E-value=14 Score=30.97 Aligned_cols=167 Identities=14% Similarity=0.065 Sum_probs=85.4
Q ss_pred ChhhHHhhcccCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHH
Q 007818 27 NLDYCTKILFNVQNPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVL 106 (588)
Q Consensus 27 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 106 (588)
+.+....+...+..++...-...+..+.+.+..+ +...+..+.. .++...-...+.++...++.+... .+..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~~~-~L~~~l 90 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK----DEDAWVRRAAADALGQIGDERAVE-PLIKAL 90 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGGGHH-HHHHHT
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHH-HHHHHH
Confidence 3444444445555667776666777777766633 3333333333 245444445556666666543333 333332
Q ss_pred HhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHH
Q 007818 107 KLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGM 186 (588)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 186 (588)
+ .++..+-...+.++.+.++.+....+.+-+..++...-...+.++.+.|+.+ +...+..+.. .++...-...
T Consensus 91 ~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 91 K---DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp T---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred c---CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 2 3566666667777777776544444444455566655556666666665543 3333333332 2344444444
Q ss_pred HHHHhccCChhHHHHHHHHHH
Q 007818 187 VSACAQLEDLNLGREIHWYIS 207 (588)
Q Consensus 187 l~~~~~~~~~~~a~~~~~~~~ 207 (588)
+.++...+. +.+...+..+.
T Consensus 164 ~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 164 ADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHhCc-hhHHHHHHHHH
Confidence 555555544 23333333333
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.20 E-value=4.7 Score=38.03 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=47.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhh----hcCCCCChHHH
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS----IFRLSPKLKHY 452 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 452 (588)
.++..+...|++++++..+..+.... +-+...+..++.++.+.|+..+|.+.|+...+ ..|+.|++.+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 35556667777777777777776643 44666777888888888888888777777543 34777776653
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.88 E-value=2.9 Score=31.66 Aligned_cols=62 Identities=15% Similarity=0.248 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 394 ALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 394 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
.-+..+-++.+....+-|++......+++|-+.+|+..|.++|+.++.+- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 44566677777788889999999999999999999999999999998853 344556776664
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.82 E-value=7.3 Score=27.65 Aligned_cols=79 Identities=15% Similarity=0.040 Sum_probs=59.1
Q ss_pred CChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhH
Q 007818 93 GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172 (588)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 172 (588)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+....||...|-+|.. .+.|-.+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 456788888888877553 33333344456778999999999999999999999988755 46778888887777777
Q ss_pred HCC
Q 007818 173 LER 175 (588)
Q Consensus 173 ~~~ 175 (588)
.+|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 665
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.60 E-value=5.5 Score=28.46 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=42.8
Q ss_pred hHHHHHHHHhC---CCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 465 LEEAEQLIRSM---PMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 465 ~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
.-+.++-++.+ ..-|++....+.+.+|.+.+|+..|+++++-+...-.+...+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33444444443 355899999999999999999999999998887655545666776654
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=85.59 E-value=32 Score=34.60 Aligned_cols=265 Identities=8% Similarity=-0.052 Sum_probs=137.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccC
Q 007818 115 YVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLE 194 (588)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 194 (588)
..-+.-+..+.+.+++......+.. .+.+...--....+....|+..+|......+=..| ......+..++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3445556677778888888887776 44444444456667777888877777777765444 233444555555555444
Q ss_pred ChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCC
Q 007818 195 DLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPE 274 (588)
Q Consensus 195 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 274 (588)
.+ +....-.-+......|+...|..+...+..........++....+ ...+....... .
T Consensus 151 ~l-----------------t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~ 209 (618)
T 1qsa_A 151 KQ-----------------DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-G 209 (618)
T ss_dssp CS-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-C
T ss_pred CC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-C
Confidence 32 222223334555666777777666666522111122222222222 12222222221 1
Q ss_pred CCccc---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHcccCChhHHHHHHHHHHHhCCCCcc
Q 007818 275 KYVVP---WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTT----VHCLSACSQLGALDDGIWIHRFIEKENFNLNV 347 (588)
Q Consensus 275 ~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 347 (588)
++... +...+.-+.+ .+.+.|...+....... ..+.... ..+.......+...++...+....... .+.
T Consensus 210 ~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~ 285 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QST 285 (618)
T ss_dssp CCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCH
T ss_pred CChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CCh
Confidence 11111 1111222222 36778888887776543 2222222 122223334443445555555443322 233
Q ss_pred hHHHHHHHHhHhcCChhHHHHHhccCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007818 348 VLGTALVDMYAKCGNIAKALQVFHEMPERN---SLTYTAIIGGLALHGKALDAISYFSEMIG 406 (588)
Q Consensus 348 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 406 (588)
....-.+....+.|+++.|...|+.+.... ....-=+..++...|+.++|..+|+.+..
T Consensus 286 ~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 286 SLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 333444445556788888888888887532 22233355566778888888888877654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.49 E-value=27 Score=33.57 Aligned_cols=95 Identities=14% Similarity=0.063 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHhccCCchHHHHHHHHHhhhhc-CCCCC----hH
Q 007818 381 YTAIIGGLALHGKALDAISYFSEMIGV--GLMPD---EITFLGILSACCHGGLVDEGRKYFAQMSSIF-RLSPK----LK 450 (588)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~ 450 (588)
...|...+...|++.+|..++..+... |..+. ...+...++.|...+++.+|..+++++.... ...+. ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456788899999999999999997642 22211 1256667888999999999999999875321 22222 24
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 451 HYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 451 ~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
.+...+..+...+++.+|-..|.++
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5667788888899999998887665
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.42 E-value=7.9 Score=27.55 Aligned_cols=79 Identities=14% Similarity=0.073 Sum_probs=58.1
Q ss_pred CChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhH
Q 007818 93 GLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQ 172 (588)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 172 (588)
...++|..+-+.+...+. ...+--.-+..+...|++++|..+.+....||...|-+|... +.|-.+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 466788888888877553 333333444567789999999999999999999999887653 5677777777777776
Q ss_pred HCC
Q 007818 173 LER 175 (588)
Q Consensus 173 ~~~ 175 (588)
..|
T Consensus 97 ~sg 99 (116)
T 2p58_C 97 RSQ 99 (116)
T ss_dssp TCC
T ss_pred hCC
Confidence 665
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.54 E-value=2.2 Score=37.12 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=25.4
Q ss_pred HhcCChHHHHHHHHh-CCCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 460 GRSGLLEEAEQLIRS-MPMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
.+.|.+++|++.... ++.+| |...-..++.-++-.|++++|.+-++-..+++|.
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 344555555544432 22333 3334444444455555555555555555555553
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.54 E-value=9.9 Score=27.02 Aligned_cols=86 Identities=15% Similarity=0.132 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007818 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407 (588)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 407 (588)
.++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.++...
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555555442 11111122345678899999999999999889888877654 4667778888777777777
Q ss_pred CCCCCHHHHHH
Q 007818 408 GLMPDEITFLG 418 (588)
Q Consensus 408 ~~~p~~~~~~~ 418 (588)
| .|....|..
T Consensus 98 g-~p~~q~Fa~ 107 (115)
T 2uwj_G 98 S-DPALADFAA 107 (115)
T ss_dssp S-SHHHHHHHH
T ss_pred C-CHHHHHHHH
Confidence 6 555555543
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=82.88 E-value=20 Score=29.96 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=8.6
Q ss_pred CChhHHHHHHHHHHhCCC
Q 007818 112 VDMYVHNAVIHVFVSCGD 129 (588)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~ 129 (588)
++..+-...+..+.+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 444444444444544444
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.82 E-value=11 Score=26.89 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007818 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIGV 407 (588)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 407 (588)
.++|..|-+.+...+. ...+--.=+..+...|++++|..+.+...-||...|.+|.. .+.|-.+++..-+.++...
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555554432 11111122345678899999999999998888888877654 3567777777777777776
Q ss_pred CCCCCHHHHH
Q 007818 408 GLMPDEITFL 417 (588)
Q Consensus 408 ~~~p~~~~~~ 417 (588)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 55555544
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=80.56 E-value=23 Score=29.21 Aligned_cols=17 Identities=12% Similarity=-0.169 Sum_probs=6.7
Q ss_pred ChhhHHHHHHHHHhcCC
Q 007818 214 TVPLANALMDMYVKCGK 230 (588)
Q Consensus 214 ~~~~~~~l~~~~~~~g~ 230 (588)
+..+....+.++...++
T Consensus 120 ~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333334444444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 588 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.004 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.004 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 2e-05
Identities = 42/325 (12%), Positives = 92/325 (28%), Gaps = 12/325 (3%)
Query: 219 NALMDMYVKCGKLESAEEIFDSMVN---KTVVSCTTMIVGYAKFGFLDIARKIFDDLPEK 275
L ++ +C +L+ + + + + + Y + G L A + +
Sbjct: 37 LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96
Query: 276 YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIH 335
+ I + + + + V
Sbjct: 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156
Query: 336 RFIEKENFNLN-VVLGTALVDMYAKCGNIAKALQVFH---EMPERNSLTYTAIIGGLALH 391
+++ N V + L ++ G I A+ F + Y + L
Sbjct: 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216
Query: 392 GKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKH 451
A++ + + + + + GL+D + + + P
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVV-HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA-- 273
Query: 452 YSCMVDLLGRSGLLEEAEQLIR--SMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLE 509
Y + + L G + EAE L R GN+ R K LE
Sbjct: 274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333
Query: 510 LDPQDSGIYVLLANMYRDSNMWEEA 534
+ P+ + + LA++ + +EA
Sbjct: 334 VFPEFAAAHSNLASVLQQQGKLQEA 358
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 7e-05
Identities = 50/394 (12%), Positives = 105/394 (26%), Gaps = 30/394 (7%)
Query: 151 LINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQ--------LEDLNLGREI 202
L + ++G A R QL R EPD ++ ++S+ L +
Sbjct: 5 LAHREYQAGDFEAAERHCM--QLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 203 HWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFL 262
+ ++E+ L N + +E + A
Sbjct: 63 NPLLAEAYSNL----GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 263 DIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSAC 322
+ L + G + + A ++A +P+ L
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 323 -SQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTY 381
+ G + I + N L ++ + +A+ + +
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAY-INLGNVLKEARIFDRAVAAYLRALSLSPNHA 237
Query: 382 TAIIG-GLALH--GKALDAISYFSEMIGVGLMPDEITFLGIL-SACCHGGLVDEGRKYFA 437
+ G AI + I L P L +A G V E +
Sbjct: 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
Query: 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEA----EQLIRSMPMAADVVVWGALFFACRL 493
+ + + ++ G +EEA + + P A L +
Sbjct: 296 TA--LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA--HSNLASVLQQ 351
Query: 494 HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527
G + + + + P + Y + N ++
Sbjct: 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE 385
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 3e-04
Identities = 37/293 (12%), Positives = 74/293 (25%), Gaps = 11/293 (3%)
Query: 256 YAKFGFLDIARKIFDDLPEK---YVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDA 312
+ G + A + L + + + Q +R + A P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFST--LAIKQNPLL 66
Query: 313 VTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHE 372
L + H + L G++ A+Q +
Sbjct: 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126
Query: 373 MPERNSLTYTAIIGGLALHGKALDAISYFSEMI-GVGLMPDEITFLGILSACCHG-GLVD 430
+ N Y L + + + P+ L + G +
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 431 EGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALF 488
+F + ++ Y + ++L + + + A VV G L
Sbjct: 187 LAIHHFEKAVTLDPNFLDA--YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMM 541
G + + + +EL P Y LAN ++ EA
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTA 297
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.004
Identities = 42/364 (11%), Positives = 100/364 (27%), Gaps = 17/364 (4%)
Query: 53 FLETGKMREAVDLYKQMLRNGGTRPDNF-TYPLLFKVCASLGLRFLGYEIFGHVLKLGFD 111
+ G A Q+ R PDN LL + +K
Sbjct: 9 EYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL 65
Query: 112 VDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDM 171
+ N + ++ + + +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 172 QLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKL 231
+ PD + + + + + + + L ++ G++
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 232 ESAEEIFDSMVN---KTVVSCTTMIVGYAKFGFLDIARKIFD---DLPEKYVVPWNAIIG 285
A F+ V + + + + D A + L + V +
Sbjct: 186 WLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245
Query: 286 GYVQAKRSKEALALFHEMQATGIKPDAVTTVHCL-SACSQLGALDDGIWIHRFIEKENFN 344
Y + A+ + +A ++P L +A + G++ + + +
Sbjct: 246 VYYEQGLIDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR-LCP 302
Query: 345 LNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIG-GLALH--GKALDAISYF 401
+ L ++ + GNI +A++++ + E A L GK +A+ ++
Sbjct: 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 362
Query: 402 SEMI 405
E I
Sbjct: 363 KEAI 366
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.004
Identities = 25/208 (12%), Positives = 62/208 (29%), Gaps = 6/208 (2%)
Query: 338 IEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAI--IGGLALHGKAL 395
E +N + ++L + + +C + ++ ++N L A +G + L
Sbjct: 28 QEPDNTGVLLLLSSI----HFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83
Query: 396 DAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCM 455
++ + +A G ++ + + ++
Sbjct: 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGN 143
Query: 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515
+ +A L V W L G + + K + LDP
Sbjct: 144 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL 203
Query: 516 GIYVLLANMYRDSNMWEEAGKVRKMMEE 543
Y+ L N+ +++ +++ A
Sbjct: 204 DAYINLGNVLKEARIFDRAVAAYLRALS 231
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 588 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.57 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.22 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.14 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.07 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.02 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.96 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.92 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.8 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.79 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.76 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.69 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.67 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.64 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.63 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.62 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.55 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.52 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.46 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.44 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.41 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.4 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.3 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.3 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.28 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.27 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.23 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.2 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.13 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.12 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.1 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.05 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.98 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.95 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.9 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.9 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.76 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.75 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.73 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.44 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.39 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.3 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.06 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.6 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.51 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.27 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.54 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.17 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.13 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.0 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.83 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6e-22 Score=190.68 Aligned_cols=371 Identities=12% Similarity=0.043 Sum_probs=257.4
Q ss_pred HHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChh
Q 007818 153 NGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLE 232 (588)
Q Consensus 153 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 232 (588)
..+.+.|++++|++.++++.+.. +-+...+..+...+...|++++|...++.+++..+. +..++..+..+|...|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcccc
Confidence 33445555555555555555432 223344445555555555555555555555554322 3445555556666666666
Q ss_pred HHHHHHHhcCCCC---cchHHHHHHHHHhcCCHHHHHHHhhhC---CCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 007818 233 SAEEIFDSMVNKT---VVSCTTMIVGYAKFGFLDIARKIFDDL---PEKYVVPWNAIIGGYVQAKRSKEALALFHEMQAT 306 (588)
Q Consensus 233 ~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 306 (588)
+|...+....+.+ ..............+....+....... ..................+....+...+......
T Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 6666555553321 112222222222222222222222211 1222233444555566677777777777777665
Q ss_pred CCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHH
Q 007818 307 GIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTA 383 (588)
Q Consensus 307 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~ 383 (588)
. +.+...+..+...+...|+++.|...++...+..+ .+...+..+...+...|++++|...++.... .+...+..
T Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 242 (388)
T d1w3ba_ 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHH
Confidence 3 33556677777888888999999999988877642 2456778888899999999999998887653 45567788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcC
Q 007818 384 IIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSG 463 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (588)
+...+...|++++|+..|++..+.. +-+..++..+..++...|++++|.+.++.... ..+.+...+..+...+...|
T Consensus 243 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCC
Confidence 8889999999999999999998863 34566888889999999999999999999887 44667788889999999999
Q ss_pred ChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCC
Q 007818 464 LLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530 (588)
Q Consensus 464 ~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (588)
++++|.+.++++ ...| +...+..+..++...|++++|+..++++++++|+++.++..++.+|.+.||
T Consensus 320 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999886 4556 467788888999999999999999999999999999999999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.2e-20 Score=181.43 Aligned_cols=353 Identities=13% Similarity=0.048 Sum_probs=288.3
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCC---CCcchHHHHHHHHHhcCCH
Q 007818 186 MVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVN---KTVVSCTTMIVGYAKFGFL 262 (588)
Q Consensus 186 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~ 262 (588)
+...+.+.|++++|.+.++.+.+..+ -+...+..+..+|...|++++|...|++..+ .+..++..+...+.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 45567788999999999999998743 3678889999999999999999999998854 2556788899999999999
Q ss_pred HHHHHHhhhCCCCCccc---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHH
Q 007818 263 DIARKIFDDLPEKYVVP---WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIE 339 (588)
Q Consensus 263 ~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 339 (588)
++|...+......+... +..........+....+........... .................+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 99999998876533333 4444555555666666666666655543 3344445555566667777888888777776
Q ss_pred HhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 007818 340 KENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITF 416 (588)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 416 (588)
... +.+...+..+...+...|++++|...+++..+ .+...|..+...+...|++++|+..++.....+ +.+...+
T Consensus 163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 240 (388)
T d1w3ba_ 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHH
Confidence 654 23456677888999999999999999987653 356688889999999999999999999988864 5566788
Q ss_pred HHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhh
Q 007818 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLH 494 (588)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~ 494 (588)
..+...+.+.|++++|...|+++.+ ..+.+...+..++..+...|++++|.+.++... .+.+...+..+...+...
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 318 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHC
Confidence 8889999999999999999999987 334557889999999999999999999998773 345677888888899999
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 319 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999864
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.1e-14 Score=133.52 Aligned_cols=243 Identities=14% Similarity=-0.063 Sum_probs=171.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHh
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAK 359 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 359 (588)
.-.....+.+.|++++|+..|+++.+.. +-+..++..+..++...|+++.|...+.+..+..+ -+...+..+..+|..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccc
Confidence 3345667888899999999999988863 23466777777888888888888888887776643 245566667777777
Q ss_pred cCChhHHHHHhccCCCCCcch---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHH
Q 007818 360 CGNIAKALQVFHEMPERNSLT---YTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYF 436 (588)
Q Consensus 360 ~~~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (588)
.|++++|.+.++.....++.. +....... . ..+.......+..+...+.+.+|...+
T Consensus 100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGA-G-------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhccchHHHHHhhhhhh-h-------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 777777777776654211110 00000000 0 000000111112223345677788888
Q ss_pred HHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 437 AQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
.++.+.....++...+..+...+...|++++|...+++. ...| +...|..+...+...|++++|+..++++++.+|++
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 887765333455777888899999999999999999886 2334 57788888889999999999999999999999999
Q ss_pred CchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 515 SGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 515 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+.++..++.+|.+.|++++|++.|+++.+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999774
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.7e-13 Score=127.16 Aligned_cols=268 Identities=12% Similarity=0.030 Sum_probs=195.6
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhCCCCC---cccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcccC
Q 007818 250 TTMIVGYAKFGFLDIARKIFDDLPEKY---VVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQLG 326 (588)
Q Consensus 250 ~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 326 (588)
-.....+.+.|++++|...|+.+.+.+ +..|..+..++...|++++|...+.+..+.. +-+...+..+...+...|
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 345667889999999999999876543 4458999999999999999999999998863 335677788888999999
Q ss_pred ChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007818 327 ALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPERNSLTYTAIIGGLALHGKALDAISYFSEMIG 406 (588)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 406 (588)
++++|...++......... ........... . ..+.......+..+...+.+.+|...+.+..+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAY-AHLVTPAEEGA-G---------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccch-HHHHHhhhhhh-h---------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999887764221 11111000000 0 00011111122233445667788888888776
Q ss_pred CCC-CCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhH
Q 007818 407 VGL-MPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVV 483 (588)
Q Consensus 407 ~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 483 (588)
... .++...+..+...+...|++++|...+++.... .+.+...|..++..|...|++++|.+.++++ ...| +..+
T Consensus 165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a 242 (323)
T d1fcha_ 165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 242 (323)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHH
Confidence 432 335667888888999999999999999999874 3445788999999999999999999999986 3445 5778
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch-----------HHHHHHHHHccCChHHHHHH
Q 007818 484 WGALFFACRLHGNVSIGERAAMKLLELDPQDSGI-----------YVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 484 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~ 537 (588)
+..++.+|...|++++|+..+++++++.|+++.. +..+..++...|+.+.+...
T Consensus 243 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 243 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999999886653 45567777777777655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=1.8e-09 Score=101.01 Aligned_cols=261 Identities=13% Similarity=-0.009 Sum_probs=178.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCC-----cchHHHHHH
Q 007818 284 IGGYVQAKRSKEALALFHEMQATGIKPD----AVTTVHCLSACSQLGALDDGIWIHRFIEKENFNL-----NVVLGTALV 354 (588)
Q Consensus 284 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~ 354 (588)
...+...|++++|++++++..+.....+ ...+..+..++...|++++|...++...+..... ....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4456677888888888888776421111 1345556667778888888888887765432111 123345566
Q ss_pred HHhHhcCChhHHHHHhccCCC-------CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHCCC----CCCHHHHHHH
Q 007818 355 DMYAKCGNIAKALQVFHEMPE-------RN----SLTYTAIIGGLALHGKALDAISYFSEMIGVGL----MPDEITFLGI 419 (588)
Q Consensus 355 ~~~~~~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~p~~~~~~~l 419 (588)
..+...|++..+...+..... +. ...+..+...+...|+++.+...+........ ......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 677788888888877765431 11 12455667788889999999999888765321 1223355556
Q ss_pred HHHhccCCchHHHHHHHHHhhhhcCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-----CHhHHHHHH
Q 007818 420 LSACCHGGLVDEGRKYFAQMSSIFRLSPK-----LKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-----DVVVWGALF 488 (588)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-----~~~~~~~l~ 488 (588)
...+...++...+...+............ ...+..+...+...|++++|.+.+++.. ..| ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 66777788888888887776553221111 2345566777889999999999998763 211 244566677
Q ss_pred HHHHhhCCHHHHHHHHHHHhc------cCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 489 FACRLHGNVSIGERAAMKLLE------LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
.++...|++++|...+++++. ..|....++..++.+|.+.|++++|.+.+++..+.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888999999999999998874 33555677889999999999999999999988653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=6.4e-10 Score=101.47 Aligned_cols=224 Identities=11% Similarity=0.054 Sum_probs=123.3
Q ss_pred HHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC-ChhHHHHHhccCCC---CCcchHHHHHHHHH
Q 007818 314 TTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG-NIAKALQVFHEMPE---RNSLTYTAIIGGLA 389 (588)
Q Consensus 314 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 389 (588)
.+..+...+.+.+..++|+..++.+.+.++ -+...|+....++...| ++++|...++...+ .+..+|..+...+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence 344444455566666777777777666532 23445555555555554 36666666666542 34556666666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC-----
Q 007818 390 LHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL----- 464 (588)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 464 (588)
..|++++|+..++++.+.. +.+...|..+..++.+.|++++|++.++++.+. -+.+...|+.+..++.+.|.
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhh
Confidence 6667777777666666642 334556666666666666666676666666653 22345556555555554443
Q ss_pred -hHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC--CchHHHHHHHHHcc--CChHHHHHH
Q 007818 465 -LEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD--SGIYVLLANMYRDS--NMWEEAGKV 537 (588)
Q Consensus 465 -~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~~A~~~ 537 (588)
+++|.+.+.++ ...| +...|..+...+. ....+++...+.+++++.|+. +..+..++.+|... +..+.+...
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~ 279 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDI 279 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 34555555443 2333 3444444444332 333455666666666655543 23344455555432 455555555
Q ss_pred HHHHH
Q 007818 538 RKMME 542 (588)
Q Consensus 538 ~~~~~ 542 (588)
+++..
T Consensus 280 ~~ka~ 284 (315)
T d2h6fa1 280 LNKAL 284 (315)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=2.3e-10 Score=101.83 Aligned_cols=218 Identities=10% Similarity=-0.107 Sum_probs=110.1
Q ss_pred ChHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHH
Q 007818 292 RSKEALALFHEMQATGI-KP--DAVTTVHCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQ 368 (588)
Q Consensus 292 ~~~~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 368 (588)
+.+.++..+++...... .+ ...++..+..++.+.|+++.|...|+...+..+ -++.++..+..+|.+.|++++|..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhh
Confidence 34566666666665421 11 112444555666677777777777777766542 245566667777777777777777
Q ss_pred HhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCC
Q 007818 369 VFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445 (588)
Q Consensus 369 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (588)
.|+++.+ .+..++..+..++...|++++|...|+...+.. +.+......+..++.+.+..+.+..+.......
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 168 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--- 168 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---
Confidence 7766552 234566666666777777777777777666542 223333333333344444444444443333321
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHH-HHhCC----CCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCC
Q 007818 446 SPKLKHYSCMVDLLGRSGLLEEAEQL-IRSMP----MAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDS 515 (588)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 515 (588)
.+....+. ++..+............ ..... ..|+ ..++..+...+...|++++|...++++++.+|++-
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 11111111 12222111111111111 11111 1121 22444555566666666666666666666666543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=8.1e-09 Score=93.96 Aligned_cols=184 Identities=9% Similarity=0.018 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChhHHHHHhccCCC--C-C-cchHHHHHHHHHhcCChHHHHHHHHH
Q 007818 328 LDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIAKALQVFHEMPE--R-N-SLTYTAIIGGLALHGKALDAISYFSE 403 (588)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 403 (588)
.+.+..+++...+...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+....+.|+.+.|.++|+.
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 455666666666543344445566666666777777777777766543 1 2 22466666666677777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHH-hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC----CC
Q 007818 404 MIGVGLMPDEITFLGILSA-CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP----MA 478 (588)
Q Consensus 404 ~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~ 478 (588)
+.+.+ +.+...|...... +...|+.+.|..+|+.+.+. .+.+...|..+++.+.+.|+.++|+.+|++.. ..
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 76653 2233333333322 33456677777777777663 34456666777777777777777777776641 22
Q ss_pred CC--HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 479 AD--VVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 479 ~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
|+ ...|...+.--..+|+.+.+..+++++.+..|.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 22 3355555555566677777777777776666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.07 E-value=2.4e-09 Score=97.61 Aligned_cols=189 Identities=10% Similarity=0.086 Sum_probs=142.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHcccC-ChhHHHHHHHHHHHhCCCCcchHHHHHHHHh
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPD-AVTTVHCLSACSQLG-ALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (588)
++.+...+.+.+.+++|+++++.+++. .|+ ...|.....++...| ++++|+..++.+.+.... +..+|..+..++
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~ 122 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHH
Confidence 666777788889999999999999986 454 445666666766665 589999999998887633 677888888899
Q ss_pred HhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCC------c
Q 007818 358 AKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGG------L 428 (588)
Q Consensus 358 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~------~ 428 (588)
.+.|++++|...++++.+ .+..+|..+...+...|++++|+..++++++.+ +-+...|..+...+.+.+ .
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhh
Confidence 999999999999998874 467788889999999999999999999998864 335566766655544433 3
Q ss_pred hHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC
Q 007818 429 VDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM 475 (588)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 475 (588)
+++|.+.+..+.+. .+.+...|..+...+...| .+++.+.++..
T Consensus 202 ~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~ 245 (315)
T d2h6fa1 202 LEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQL 245 (315)
T ss_dssp HHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHH
T ss_pred hHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHH
Confidence 67888888888874 3445777777766665444 56666666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=2.2e-09 Score=95.19 Aligned_cols=215 Identities=12% Similarity=-0.045 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHHHhCCCC---cchHHHHHHHHhHhcCChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHH
Q 007818 328 LDDGIWIHRFIEKENFNL---NVVLGTALVDMYAKCGNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYF 401 (588)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 401 (588)
.+.++..++++....... ...++..+..+|.+.|++++|...|++..+ .++.+|..+..+|...|++++|+..|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 344555555554432211 234566778899999999999999988763 46778999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC
Q 007818 402 SEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAAD 480 (588)
Q Consensus 402 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 480 (588)
+++.+.. +-+..++..+..++...|++++|...++...+. .+.+......+...+.+.+..+.+..+..... ..+.
T Consensus 95 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 95 DSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred hHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 9998853 334567888888899999999999999999874 23344444445555566665555544444331 1122
Q ss_pred HhHHHHHHHHH----HhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCC
Q 007818 481 VVVWGALFFAC----RLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGV 546 (588)
Q Consensus 481 ~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 546 (588)
...+. ++..+ ...+..+.+...+.......|..+.++..++.+|...|++++|.+.|+++.+..+
T Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 172 QWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 11221 11111 1223345555555555666677777889999999999999999999999987654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=2.6e-10 Score=105.67 Aligned_cols=233 Identities=11% Similarity=-0.086 Sum_probs=162.2
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHccc--CChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcCChh
Q 007818 287 YVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQL--GALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCGNIA 364 (588)
Q Consensus 287 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 364 (588)
+...|++++|+..++...+.. +-+...+.....++... ++.+.+...+..+.+.........+......+...+.++
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccH
Confidence 334556778888888887753 23444555555554444 457888888888887754332333344556777889999
Q ss_pred HHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhh
Q 007818 365 KALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSS 441 (588)
Q Consensus 365 ~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 441 (588)
.|...++.+.+. +...|+.+..++...|++++|...+....+. .|+.. .....+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH
Confidence 999999888754 4567788888888888888776555443332 12211 122334445666677777777765
Q ss_pred hcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 442 IFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 442 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
..+++...+..++..+...|+..+|.+.+.+.. ..| +...+..++.++...|++++|+..++++++++|.++..|.
T Consensus 237 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 --GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp --SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred --hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 334555556677778888899999999888763 445 4567788888888999999999999999999998888888
Q ss_pred HHHHHHHc
Q 007818 520 LLANMYRD 527 (588)
Q Consensus 520 ~l~~~~~~ 527 (588)
.|...+.-
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 88877753
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.02 E-value=2.1e-08 Score=91.17 Aligned_cols=181 Identities=10% Similarity=-0.015 Sum_probs=144.3
Q ss_pred ChhHHHHHhccCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHH
Q 007818 362 NIAKALQVFHEMPE----RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437 (588)
Q Consensus 362 ~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 437 (588)
..++|..+|++..+ .+...|...+..+...|+++.|..+|+++++.........|...+..+.+.|+.+.|+++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45677788877542 34557888888899999999999999999886433334578888999999999999999999
Q ss_pred HhhhhcCCCCChHHHHHHHHH-HHhcCChHHHHHHHHhCC--CCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 438 QMSSIFRLSPKLKHYSCMVDL-LGRSGLLEEAEQLIRSMP--MAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 438 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
++.+. .+.+...|...+.. +...|+.+.|..+|+.+. .+.+...|...+..+...|++++|..+|+++++..|.+
T Consensus 159 ~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 99873 34455566555544 345689999999999873 23457789999999999999999999999999988765
Q ss_pred Cc----hHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 515 SG----IYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 515 ~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
+. +|..++......|+.+.+.++++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 43 6888888888899999999999998764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=1.6e-07 Score=87.17 Aligned_cols=265 Identities=11% Similarity=-0.005 Sum_probs=142.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCc------ccHHHHHHHHHccCChhhHHHHHHHHHHhcCC-CC----h
Q 007818 46 WNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDN------FTYPLLFKVCASLGLRFLGYEIFGHVLKLGFD-VD----M 114 (588)
Q Consensus 46 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~ 114 (588)
.......+...|++++|++.+++... ..|+. ..+..+..++...|++++|...+++..+.... ++ .
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~---~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 91 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALE---ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 91 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh---hCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 33445667889999999999999887 23432 24556667788889999999999988764311 11 2
Q ss_pred hHHHHHHHHHHhCCChhHHHHHhccC-------CCCC----cccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC----C
Q 007818 115 YVHNAVIHVFVSCGDLGLACNVFDES-------CVRN----LVSWNSLINGFVRSGFPREAIRLFRDMQLERVEP----D 179 (588)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~A~~~~~~~-------~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----~ 179 (588)
..+..+...+...|++..+...+.+. ..+. ...+..+...+...|+++.+...+.......... .
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 34445556666777777777666541 1111 1233444556666677777777766665432111 1
Q ss_pred cchHHHHHHHHhccCChhHHHHHHHHHHHhCCC--CC----hhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHH
Q 007818 180 EVTMIGMVSACAQLEDLNLGREIHWYISESGLT--LT----VPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMI 253 (588)
Q Consensus 180 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll 253 (588)
...+......+...++...+...+......... .. ...+..+...+...|+++.|...+........
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------- 244 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF------- 244 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC-------
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc-------
Confidence 122233334444555555555555444332110 00 11223333344444444444444444322110
Q ss_pred HHHHhcCCHHHHHHHhhhCCCCCc---ccHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHccc
Q 007818 254 VGYAKFGFLDIARKIFDDLPEKYV---VPWNAIIGGYVQAKRSKEALALFHEMQA----TGIKPD-AVTTVHCLSACSQL 325 (588)
Q Consensus 254 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~ 325 (588)
..+. ..+..+...+...|++++|...++.... .+..|+ ..++..+..++...
T Consensus 245 --------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 304 (366)
T d1hz4a_ 245 --------------------ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA 304 (366)
T ss_dssp --------------------TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------ccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHC
Confidence 0000 1144456667777777777777766543 233332 23455555666677
Q ss_pred CChhHHHHHHHHHHH
Q 007818 326 GALDDGIWIHRFIEK 340 (588)
Q Consensus 326 ~~~~~a~~~~~~~~~ 340 (588)
|++++|...+++..+
T Consensus 305 g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 305 GRKSDAQRVLLDALK 319 (366)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.92 E-value=1.8e-09 Score=99.87 Aligned_cols=247 Identities=8% Similarity=-0.073 Sum_probs=172.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHH-H---HHHHHHc-------ccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHh
Q 007818 289 QAKRSKEALALFHEMQATGIKPDAVTT-V---HCLSACS-------QLGALDDGIWIHRFIEKENFNLNVVLGTALVDMY 357 (588)
Q Consensus 289 ~~~~~~~a~~~~~~~~~~~~~p~~~~~-~---~l~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (588)
..+..++|+++++...+. .|+..+. + .++.... ..|.+++|+.+++.+.+..+ .+...+..+..++
T Consensus 41 ~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p-k~~~~~~~~~~~~ 117 (334)
T d1dcea1 41 AGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLL 117 (334)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC-CcHHHHHHhhHHH
Confidence 334458999999998875 5665442 2 2222222 23446778888888877653 2455555565555
Q ss_pred HhcC--ChhHHHHHhccCCC---CCcchHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHH
Q 007818 358 AKCG--NIAKALQVFHEMPE---RNSLTYT-AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDE 431 (588)
Q Consensus 358 ~~~~--~~~~A~~~~~~~~~---~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 431 (588)
...+ ++++|...++++.+ ++...+. .....+...+.++.|+..++.+.+.. +-+...|..+..++...|++++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHH
Confidence 5554 57888888888753 2344444 34466777899999999999888864 3456678888888888888888
Q ss_pred HHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhc
Q 007818 432 GRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMA-ADVVVWGALFFACRLHGNVSIGERAAMKLLE 509 (588)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 509 (588)
|...++...+. .|. ...+...+...+..+++...+... ... +....+..++..+...|+.++|...+.++++
T Consensus 197 A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 197 SGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp SSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77666655542 111 112333455567777777776654 222 3444555566677788999999999999999
Q ss_pred cCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 510 LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 510 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.+|.+..++..++.+|.+.|++++|.++++++.+.+
T Consensus 271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld 306 (334)
T d1dcea1 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 306 (334)
T ss_dssp TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999998754
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=2.9e-08 Score=75.02 Aligned_cols=90 Identities=17% Similarity=0.091 Sum_probs=64.6
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChH
Q 007818 455 MVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWE 532 (588)
Q Consensus 455 l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 532 (588)
-+..+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..+.++++++|+++.+|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 455666777777777777765 2233 56667777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhc
Q 007818 533 EAGKVRKMMEER 544 (588)
Q Consensus 533 ~A~~~~~~~~~~ 544 (588)
+|+..+++..+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 777777777654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=2e-08 Score=84.89 Aligned_cols=97 Identities=13% Similarity=-0.003 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 007818 447 PKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANM 524 (588)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 524 (588)
|+...+...+..|.+.|++++|++.|+++ ...| ++..|..++.+|.+.|++++|+..++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33344444444555555555555555443 2222 344444455555555555555555555555555555555555555
Q ss_pred HHccCChHHHHHHHHHHHh
Q 007818 525 YRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 525 ~~~~g~~~~A~~~~~~~~~ 543 (588)
|.+.|++++|+..|+++.+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=5.9e-08 Score=73.31 Aligned_cols=106 Identities=11% Similarity=0.002 Sum_probs=89.5
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHhHHHHHHHHHHhhCC
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MA-ADVVVWGALFFACRLHGN 496 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~ 496 (588)
-...+...|++++|+..|+++.+. -+.+...|..+..+|...|++++|++.++++. .. .++..|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 345677889999999999999874 35567889999999999999999999998873 33 467889999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 497 VSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
+++|+..++++++++|+++.++..+..+-.
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999999888877643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.71 E-value=3.1e-08 Score=74.20 Aligned_cols=90 Identities=14% Similarity=0.004 Sum_probs=80.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCC
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNM 530 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 530 (588)
..++..+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34677788999999999999987 3445 578889999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 007818 531 WEEAGKVRKMME 542 (588)
Q Consensus 531 ~~~A~~~~~~~~ 542 (588)
+++|++.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.69 E-value=1.6e-07 Score=78.01 Aligned_cols=123 Identities=12% Similarity=-0.068 Sum_probs=82.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC
Q 007818 385 IGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL 464 (588)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (588)
...+...|+++.|++.|.++ .+|++.++..+..++...|++++|++.|++..+. -+.....|..+..+|.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhcc
Confidence 44566777788887777653 2566677777777777788888888888877764 23346677777777777788
Q ss_pred hHHHHHHHHhCC----CCC--------------CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC
Q 007818 465 LEEAEQLIRSMP----MAA--------------DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 465 ~~~A~~~~~~~~----~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~ 513 (588)
+++|.+.|++.. ..+ ...++..+..++.+.|++++|.+.+.+++++.|.
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 777777776641 000 0234455666677777777777777777777774
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.2e-07 Score=78.91 Aligned_cols=88 Identities=13% Similarity=0.017 Sum_probs=81.7
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHH
Q 007818 456 VDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAG 535 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 535 (588)
+..+...|++++|++.|+++. +|++..|..++.++...|++++|+..|+++++++|+++.+|..++.+|.+.|++++|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHH
Confidence 566789999999999999873 5788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 007818 536 KVRKMMEER 544 (588)
Q Consensus 536 ~~~~~~~~~ 544 (588)
+.|++....
T Consensus 91 ~~~~kAl~~ 99 (192)
T d1hh8a_ 91 KDLKEALIQ 99 (192)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.9e-07 Score=75.04 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=96.3
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCC
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGN 496 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~ 496 (588)
....|.+.|++++|+..|+++.+. .+.+...|..++.+|...|++++|.+.|+++ ...| +...|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 455677899999999999999874 3456888889999999999999999999887 3445 56789999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHH--ccCChHHHHHH
Q 007818 497 VSIGERAAMKLLELDPQDSGIYVLLANMYR--DSNMWEEAGKV 537 (588)
Q Consensus 497 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~~A~~~ 537 (588)
+++|+..+++++++.|+++.++..+..+.. ..+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998888776643 44556666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.63 E-value=5.9e-08 Score=81.92 Aligned_cols=111 Identities=9% Similarity=-0.132 Sum_probs=65.6
Q ss_pred CCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHH
Q 007818 411 PDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALF 488 (588)
Q Consensus 411 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 488 (588)
|+...+......+.+.|++++|+..|+++... .|.++..|..++.+|.+.|++++|.+.|+++ ...| +..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 44555555556666666666666666666553 2344556666666666666666666666654 3344 355666666
Q ss_pred HHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHH
Q 007818 489 FACRLHGNVSIGERAAMKLLELDPQDSGIYVLLAN 523 (588)
Q Consensus 489 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 523 (588)
.++...|++++|+..+++++++.|++...+...++
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 114 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIP 114 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 66666666666666666666666654444333333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.5e-07 Score=75.72 Aligned_cols=94 Identities=12% Similarity=0.010 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccC
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSMP-MAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSN 529 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 529 (588)
+...+..|.+.|++++|...|+++. ..| +...|..+...+...|++++|+..++++++++|+++.+|..++.++...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3445667889999999999999873 344 67789999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcC
Q 007818 530 MWEEAGKVRKMMEERG 545 (588)
Q Consensus 530 ~~~~A~~~~~~~~~~~ 545 (588)
++++|.+.++++.+..
T Consensus 93 ~~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK 108 (159)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHcC
Confidence 9999999999998764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.6e-07 Score=70.94 Aligned_cols=107 Identities=12% Similarity=-0.065 Sum_probs=82.6
Q ss_pred HHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCC---hHHHHHHHHhCC-CCCCH---hHHHHHHH
Q 007818 417 LGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGL---LEEAEQLIRSMP-MAADV---VVWGALFF 489 (588)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~~~~---~~~~~l~~ 489 (588)
..++..+...+++++|++.|++.... -+.++.++..++.++.+.++ +++|.++++++- ..|.. .++..++.
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 34666777788899999999998874 35567888888888877554 456888888863 33432 36778888
Q ss_pred HHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHH
Q 007818 490 ACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMY 525 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 525 (588)
+|.+.|++++|+..++++++++|++..+...+..+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 899999999999999999999999887776665443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.52 E-value=1.1e-05 Score=70.87 Aligned_cols=151 Identities=14% Similarity=0.016 Sum_probs=101.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh----cCC
Q 007818 391 HGKALDAISYFSEMIGVGLMPDEITFLGILSA--CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR----SGL 464 (588)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 464 (588)
.++.+.|...++...+.|. +........... .........+...+...... .+...+..|...|.. ..+
T Consensus 87 ~~~~~~a~~~~~~a~~~g~-~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~ 161 (265)
T d1ouva_ 87 SQNTNKALQYYSKACDLKY-AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTPKD 161 (265)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCC
T ss_pred chhhHHHHHHHhhhhhhhh-hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcccc
Confidence 3456777777777777652 222111111111 22344566677776666552 456667777777765 446
Q ss_pred hHHHHHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc----cCChHHHHH
Q 007818 465 LEEAEQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD----SNMWEEAGK 536 (588)
Q Consensus 465 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~ 536 (588)
...+..+++......+......+...+.. .++++.|+..|+++.+.+ ++.++..|+.+|.+ ..++++|.+
T Consensus 162 ~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~ 239 (265)
T d1ouva_ 162 LKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIE 239 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred cccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHH
Confidence 66777777766444566666667666654 568999999999998875 57789999999986 448999999
Q ss_pred HHHHHHhcCCcc
Q 007818 537 VRKMMEERGVEK 548 (588)
Q Consensus 537 ~~~~~~~~~~~~ 548 (588)
+|++..+.|..+
T Consensus 240 ~~~kAa~~g~~~ 251 (265)
T d1ouva_ 240 NFKKGCKLGAKG 251 (265)
T ss_dssp HHHHHHHHTCHH
T ss_pred HHHHHHHCcCHH
Confidence 999998887543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=1.6e-06 Score=70.15 Aligned_cols=85 Identities=9% Similarity=-0.075 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (588)
.+|..+..+|.+.|++++|+..++++ ...| ++..+..++.++...|++++|+..++++++++|+|+.+...+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35677888899999999999999876 3455 677888899999999999999999999999999999999999888777
Q ss_pred cCChHHH
Q 007818 528 SNMWEEA 534 (588)
Q Consensus 528 ~g~~~~A 534 (588)
.+...+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.44 E-value=1.1e-06 Score=78.59 Aligned_cols=161 Identities=10% Similarity=-0.054 Sum_probs=95.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC----hHHHHH
Q 007818 384 IIGGLALHGKALDAISYFSEMIGV----GLMPD-EITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK----LKHYSC 454 (588)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 454 (588)
....|...|++++|.+.|.+..+. +-.++ ..+|..+..+|.+.|++++|.+.+++..+...-..+ ...+..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 455666666677776666665442 11111 235666667777777777777777765543111111 334445
Q ss_pred HHHHHHh-cCChHHHHHHHHhCC------CCC--CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCc-------hH
Q 007818 455 MVDLLGR-SGLLEEAEQLIRSMP------MAA--DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSG-------IY 518 (588)
Q Consensus 455 l~~~~~~-~g~~~~A~~~~~~~~------~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-------~~ 518 (588)
++..|.. .|++++|.+.+++.. ..| ...++..++..+...|++++|...++++....|.++. .+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 5555543 477777777776551 111 1334566666777777777777777777777665442 24
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 519 VLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 519 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
...+.++...|+++.|.+.+++..+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45566666777777777777776554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.4e-06 Score=70.55 Aligned_cols=63 Identities=16% Similarity=-0.061 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
++..+..+|.+.|++++|+..++++++++|+++.++..++.+|...|++++|+..|+++.+.+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 566677788999999999999999999999999999999999999999999999999998764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.40 E-value=4.6e-06 Score=74.41 Aligned_cols=128 Identities=11% Similarity=0.035 Sum_probs=66.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhc---CCCCCC-cccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCC-----hhH
Q 007818 46 WNVAIRGFLETGKMREAVDLYKQMLRN---GGTRPD-NFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVD-----MYV 116 (588)
Q Consensus 46 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~ 116 (588)
|......|...+++++|.+.|+++..- .+.+++ ..+|..+..+|.+.|++++|...++...+.....+ ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 556677777778888888877776541 111111 23566666777777777777777776655321111 223
Q ss_pred HHHHHHHHHh-CCChhHHHHHhccCC-------CC--CcccHHHHHHHHHhCCChhHHHHHHHHhHH
Q 007818 117 HNAVIHVFVS-CGDLGLACNVFDESC-------VR--NLVSWNSLINGFVRSGFPREAIRLFRDMQL 173 (588)
Q Consensus 117 ~~~l~~~~~~-~~~~~~A~~~~~~~~-------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 173 (588)
+..+...|.. .|++++|.+.+++.. .+ ...++..+...+...|++++|++.|++...
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 3344444422 355555555554310 00 112344444455555555555555555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=8.4e-07 Score=67.96 Aligned_cols=92 Identities=9% Similarity=0.017 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch-------HHHHH
Q 007818 452 YSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI-------YVLLA 522 (588)
Q Consensus 452 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~l~ 522 (588)
+..++..+.+.|++++|++.|++. ...| +...+..+..+|...|++++|+..++++++++|+++.. |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445667777788888888888765 2333 56677777778888888888888888888888776654 44455
Q ss_pred HHHHccCChHHHHHHHHHHHh
Q 007818 523 NMYRDSNMWEEAGKVRKMMEE 543 (588)
Q Consensus 523 ~~~~~~g~~~~A~~~~~~~~~ 543 (588)
.++...+++++|++.+++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 666677788888888877654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.30 E-value=6.6e-06 Score=66.34 Aligned_cols=93 Identities=11% Similarity=-0.025 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc
Q 007818 450 KHYSCMVDLLGRSGLLEEAEQLIRSMP-MA-ADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (588)
.+|..+..+|.+.|++++|+..++.+. .. .+...+.....++...|++++|+..++++++++|+++.+...+..+...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 346667888899999999999998763 33 4677888888899999999999999999999999999999888888777
Q ss_pred cCChH-HHHHHHHHHH
Q 007818 528 SNMWE-EAGKVRKMME 542 (588)
Q Consensus 528 ~g~~~-~A~~~~~~~~ 542 (588)
.+... ...+.+..|.
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 66554 3455555553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=7.4e-07 Score=67.21 Aligned_cols=93 Identities=13% Similarity=0.001 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCC-CCHhHHHHHHHHHHhhC---CHHHHHHHHHHHhccCCCC--CchHHHHHHHH
Q 007818 453 SCMVDLLGRSGLLEEAEQLIRSM-PMA-ADVVVWGALFFACRLHG---NVSIGERAAMKLLELDPQD--SGIYVLLANMY 525 (588)
Q Consensus 453 ~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 525 (588)
..++..+...+++++|.+.|++. ... .++.++..+..++.+.+ ++++|+.+++++++.+|.+ +.++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45777888999999999999987 333 46788888888887644 5567999999999988754 34789999999
Q ss_pred HccCChHHHHHHHHHHHhcC
Q 007818 526 RDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 526 ~~~g~~~~A~~~~~~~~~~~ 545 (588)
.+.|++++|+++|+++.+..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 99999999999999998864
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.28 E-value=4.1e-06 Score=66.30 Aligned_cols=63 Identities=14% Similarity=-0.028 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
++..+..++.+.|++++|+..+.++++.+|.+..+|..++.++...|++++|+..|++..+.+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~ 131 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 556677778888888888888888888888888888888888888888888888888887653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.27 E-value=3e-06 Score=68.63 Aligned_cols=85 Identities=9% Similarity=-0.061 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYR 526 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 526 (588)
...+..+..+|.+.|++++|+..++++ ...| ++..|..++.++...|++++|+..++++++++|+++.+...+..+..
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455667778888888888888888776 3444 56678888888888888888888888888888888888777777665
Q ss_pred ccCChHH
Q 007818 527 DSNMWEE 533 (588)
Q Consensus 527 ~~g~~~~ 533 (588)
+.....+
T Consensus 157 ~l~~~~~ 163 (169)
T d1ihga1 157 KIKAQKD 163 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=1.3e-07 Score=91.90 Aligned_cols=98 Identities=11% Similarity=-0.166 Sum_probs=51.0
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc
Q 007818 448 KLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 448 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (588)
+...+..+...+.+.|+.++|...++..........+..++..+...|++++|+..|++++++.|+++..|+.|+.++..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34556666667777777777766554431101123556666677777788888888888888888777788888888888
Q ss_pred cCChHHHHHHHHHHHhcC
Q 007818 528 SNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 528 ~g~~~~A~~~~~~~~~~~ 545 (588)
.|++.+|...|.+.....
T Consensus 199 ~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp TTCHHHHHHHHHHHHSSS
T ss_pred cCCHHHHHHHHHHHHhCC
Confidence 888888877777776544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=2.9e-06 Score=68.67 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=60.5
Q ss_pred CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 480 DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 480 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
....+..+..++.+.|++++|+..+.++++++|+++.+|..++.+|...|++++|++.|+++.+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 344677788889999999999999999999999999999999999999999999999999998753
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.20 E-value=6.3e-06 Score=65.22 Aligned_cols=127 Identities=10% Similarity=-0.016 Sum_probs=90.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHH
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLL 459 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (588)
.+......+.+.|++.+|+..|.+.+..- |.. .... +.... ..... ....+|..++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~-~~~~~--~~~~~-----~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWD-DQILL--DKKKN-----IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCC-CHHHH--HHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhh-hHHHH--Hhhhh-----HHHHHHhhHHHHH
Confidence 44555667778888888888888776531 110 0000 00000 00100 1234677889999
Q ss_pred HhcCChHHHHHHHHhC-CCCC-CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc
Q 007818 460 GRSGLLEEAEQLIRSM-PMAA-DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRD 527 (588)
Q Consensus 460 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 527 (588)
.+.|++++|++.++++ ...| +..+|..++.++...|++++|+..++++++++|+|+.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999986 3445 678999999999999999999999999999999999988887766543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.20 E-value=0.0016 Score=57.82 Aligned_cols=136 Identities=14% Similarity=0.065 Sum_probs=60.5
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHH
Q 007818 40 NPNSFSWNVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNA 119 (588)
Q Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (588)
.||..--..+.+-|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++... -+..+|..
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~ 74 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 74 (336)
T ss_dssp CC----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHH
Confidence 34444444455555566666666666655533 555555566666666555544322 23445555
Q ss_pred HHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhcc
Q 007818 120 VIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQL 193 (588)
Q Consensus 120 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 193 (588)
+...+.+..+...+.- .......++.....++..|-..|.++....+++..... -.++...++.++..+++.
T Consensus 75 ~~~~l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 75 VCFACVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp HHHHHHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 6666655554443322 11111123333345566666666666666666655422 133444455555555554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.16 E-value=1e-05 Score=65.20 Aligned_cols=63 Identities=14% Similarity=-0.040 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 483 VWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 483 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.+..+..++.+.|++++|+..++++++++|+++.++..++.+|...|++++|++.|+++.+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~ 128 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 128 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 455677788999999999999999999999999999999999999999999999999998764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.13 E-value=0.002 Score=57.16 Aligned_cols=219 Identities=11% Similarity=0.061 Sum_probs=108.3
Q ss_pred CCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHhccCCCCCcccHHHHHHHHH
Q 007818 77 PDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVSCGDLGLACNVFDESCVRNLVSWNSLINGFV 156 (588)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~ 156 (588)
|+..--..+...|.+.|.++.|..++..+.. |..++..+.+.+++..|.+.+.+.. +..+|..+...+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence 4544455566677777888888877764433 5566677777777777777776543 4557777777777
Q ss_pred hCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCChhHHHH
Q 007818 157 RSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYISESGLTLTVPLANALMDMYVKCGKLESAEE 236 (588)
Q Consensus 157 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 236 (588)
+.....-+ .+...+...+......++..|-..|.++....+++..... -..+...++.++.+|++.+ .++-.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHH
Confidence 66554332 2222233345555566777777777777777777665432 2345566677777776654 233333
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 007818 237 IFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTV 316 (588)
Q Consensus 237 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 316 (588)
.++..- +......++..|-+.+. |..++-.|.+.|.++.|..+.- .. .++..-..
T Consensus 154 ~l~~~s--~~y~~~k~~~~c~~~~l------------------~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~ 208 (336)
T d1b89a_ 154 HLELFW--SRVNIPKVLRAAEQAHL------------------WAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEG 208 (336)
T ss_dssp HHHHHS--TTSCHHHHHHHHHTTTC------------------HHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHH
T ss_pred HHHhcc--ccCCHHHHHHHHHHcCC------------------hHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHH
Confidence 333221 11122222333333322 4445555666667766655442 22 23333333
Q ss_pred HHHHHHcccCChhHHHHHHHHH
Q 007818 317 HCLSACSQLGALDDGIWIHRFI 338 (588)
Q Consensus 317 ~l~~~~~~~~~~~~a~~~~~~~ 338 (588)
..+..+.+..+.+..-++....
T Consensus 209 ~f~e~~~k~~N~e~~~~~i~~y 230 (336)
T d1b89a_ 209 QFKDIITKVANVELYYRAIQFY 230 (336)
T ss_dssp HHHHHHHHCSSTHHHHHHHHHH
T ss_pred HHHHHHHccCChHHHHHHHHHH
Confidence 4444444544544444444333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.12 E-value=8.4e-06 Score=60.40 Aligned_cols=89 Identities=6% Similarity=-0.121 Sum_probs=53.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhc
Q 007818 383 AIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRS 462 (588)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (588)
.+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|+..++++.+. .+.+...+..++..|...
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHC
Confidence 34455566666666666666666542 224456666666666666666666666666652 233455666666666666
Q ss_pred CChHHHHHHHHh
Q 007818 463 GLLEEAEQLIRS 474 (588)
Q Consensus 463 g~~~~A~~~~~~ 474 (588)
|++++|.+.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666666654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.10 E-value=1.3e-05 Score=65.02 Aligned_cols=120 Identities=14% Similarity=0.051 Sum_probs=84.5
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCCh-HHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCH
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLL-EEAEQLIRSMPMAADVVVWGALFFACRLHGNV 497 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 497 (588)
........|++++|.+.|......+.-.+-... ..+.+ .....-++. .....+..++.++...|++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 334567788888888888888764221111000 00111 000111111 1234667788889999999
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHH-----hcCCccCCc
Q 007818 498 SIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMME-----ERGVEKTPG 551 (588)
Q Consensus 498 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 551 (588)
++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++. +.|+.|.+.
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999999999999999999999999999999999984 357777654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.05 E-value=0.0011 Score=57.52 Aligned_cols=221 Identities=11% Similarity=-0.069 Sum_probs=121.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHcc----cCChhHHHHHHHHHHHhCCCCcchHHHHHHH
Q 007818 280 WNAIIGGYVQAKRSKEALALFHEMQATGIKPDAVTTVHCLSACSQ----LGALDDGIWIHRFIEKENFNLNVVLGTALVD 355 (588)
Q Consensus 280 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 355 (588)
+..|...+...+++++|++.|++..+.| +...+..|-..+.. ..+...+...++...+.+ ++.....+..
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~ 78 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 78 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence 3444455555666666666666666654 23333333333332 445566666666555544 2222222332
Q ss_pred HhHh----cCChhHHHHHhccCCCC-CcchHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-
Q 007818 356 MYAK----CGNIAKALQVFHEMPER-NSLTYTAIIGGLAL----HGKALDAISYFSEMIGVGLMPDEITFLGILSACCH- 425 (588)
Q Consensus 356 ~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 425 (588)
.+.. ..+.+.|...++...+. .......+...+.. ......+...+...... .+...+..+...+..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 79 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAG 155 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHT
T ss_pred ccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccC
Confidence 2222 34556666666554432 22222333333322 33456666666665553 344455555555543
Q ss_pred ---CCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHhHHHHHHHHHHh----h
Q 007818 426 ---GGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR----SGLLEEAEQLIRSMPMAADVVVWGALFFACRL----H 494 (588)
Q Consensus 426 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~ 494 (588)
..+...+..+++...+. .+......+...|.. ..++++|..+|++....-++..+..+...|.. .
T Consensus 156 ~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~ 231 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVT 231 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSS
T ss_pred CCcccccccchhhhhccccc----cccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCc
Confidence 45666777777777653 355556666666654 45788888888877444456666666666654 3
Q ss_pred CCHHHHHHHHHHHhccCCC
Q 007818 495 GNVSIGERAAMKLLELDPQ 513 (588)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~ 513 (588)
++.++|...++++.+.++.
T Consensus 232 ~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 232 RNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CCSTTHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHHHHCcCH
Confidence 3778888888888877653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=1.6e-05 Score=56.69 Aligned_cols=76 Identities=20% Similarity=0.126 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 449 LKHYSCMVDLLGRSGLLEEAEQLIRSMP--------MAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 449 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
......++..+.+.|++++|.+.|++.. ..++ ..++..+..++.+.|++++|+..++++++++|+++.++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 3444567778888888888888887651 1122 557888999999999999999999999999999999988
Q ss_pred HHHHH
Q 007818 520 LLANM 524 (588)
Q Consensus 520 ~l~~~ 524 (588)
++...
T Consensus 85 Nl~~~ 89 (95)
T d1tjca_ 85 NLKYF 89 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.95 E-value=8.8e-06 Score=63.51 Aligned_cols=128 Identities=10% Similarity=0.010 Sum_probs=73.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccC----------CchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHG----------GLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
|-+.+.+++|+..|+...+.. +.+...+..+..++... +.+++|+..|+++.+. -|.+...|..++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHH
Confidence 344455666677776666643 33444555555555432 2334555555555542 1233455555555
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHH
Q 007818 458 LLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKV 537 (588)
Q Consensus 458 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 537 (588)
+|...|+.. ++.. ...+++++|...|+++++++|+++..+..|.... +|.++
T Consensus 84 ~y~~~g~~~------------~~~~---------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~~~ 135 (145)
T d1zu2a1 84 AYTSFAFLT------------PDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAPQL 135 (145)
T ss_dssp HHHHHHHHC------------CCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THHHH
T ss_pred HHHHcccch------------hhHH---------HHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHHHH
Confidence 554443211 0100 0122468899999999999999887777776653 66677
Q ss_pred HHHHHhcCC
Q 007818 538 RKMMEERGV 546 (588)
Q Consensus 538 ~~~~~~~~~ 546 (588)
+.++.+.|+
T Consensus 136 ~~e~~k~~~ 144 (145)
T d1zu2a1 136 HAEAYKQGL 144 (145)
T ss_dssp HHHHHHSSS
T ss_pred HHHHHHHhc
Confidence 777766664
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.90 E-value=2.9e-05 Score=61.55 Aligned_cols=89 Identities=17% Similarity=-0.090 Sum_probs=63.3
Q ss_pred HHHHHhcCChHHHHHHHHhC----CCCC----------CHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCC--------
Q 007818 456 VDLLGRSGLLEEAEQLIRSM----PMAA----------DVVVWGALFFACRLHGNVSIGERAAMKLLELDPQ-------- 513 (588)
Q Consensus 456 ~~~~~~~g~~~~A~~~~~~~----~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-------- 513 (588)
+..+.+.|++++|++.|++. +..| ....|..+..++...|++++|...+++++++.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33445566666666666654 1111 1346677778888888888888888888765432
Q ss_pred ---CCchHHHHHHHHHccCChHHHHHHHHHHHhc
Q 007818 514 ---DSGIYVLLANMYRDSNMWEEAGKVRKMMEER 544 (588)
Q Consensus 514 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 544 (588)
...++..++.+|...|++++|++.|++..+.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235788999999999999999999998764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=6.7e-05 Score=56.90 Aligned_cols=92 Identities=7% Similarity=-0.026 Sum_probs=49.4
Q ss_pred HHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCC-CC---CC-----HhHHHHHHH
Q 007818 419 ILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMP-MA---AD-----VVVWGALFF 489 (588)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---~~-----~~~~~~l~~ 489 (588)
+...+...|++++|+..|.+..+. .+.+...+..+..+|.+.|++++|.+.++++. .. +. ..++..+..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 334444555555555555555542 12334455555555555555555555555431 00 11 224445555
Q ss_pred HHHhhCCHHHHHHHHHHHhccCC
Q 007818 490 ACRLHGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 490 ~~~~~~~~~~A~~~~~~~~~~~p 512 (588)
.+...+++++|+..+++++...|
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCC
Confidence 66677777888888877777766
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.76 E-value=1.2e-05 Score=62.77 Aligned_cols=98 Identities=9% Similarity=0.005 Sum_probs=70.4
Q ss_pred ccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHH
Q 007818 424 CHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERA 503 (588)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 503 (588)
.+.+.+++|+..|+.+.+. -|.+...+..+..+|...+++..+.+ ..+.+++|+..
T Consensus 8 ~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~~ 63 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAITK 63 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHHH
Confidence 3445566677777766653 24445666666666655555444433 23456789999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHccCC-----------hHHHHHHHHHHHhcC
Q 007818 504 AMKLLELDPQDSGIYVLLANMYRDSNM-----------WEEAGKVRKMMEERG 545 (588)
Q Consensus 504 ~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~ 545 (588)
++++++++|+++.+|..++.+|...|+ +++|.+.|+++.+..
T Consensus 64 ~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 64 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 999999999999999999999988764 688999999887754
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.75 E-value=3e-05 Score=67.16 Aligned_cols=128 Identities=13% Similarity=0.076 Sum_probs=83.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCC-hHHHHHHHHHHHhcCChH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPK-LKHYSCMVDLLGRSGLLE 466 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 466 (588)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 345788888888888888864 455677888888888888888888888888764 344 444555555554444444
Q ss_pred HHHHHHHhC--CCCCC-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHH
Q 007818 467 EAEQLIRSM--PMAAD-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYV 519 (588)
Q Consensus 467 ~A~~~~~~~--~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 519 (588)
++..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..++
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 433322221 11232 233334445567778888888888888888887666544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=4e-05 Score=54.50 Aligned_cols=65 Identities=11% Similarity=-0.130 Sum_probs=55.6
Q ss_pred HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC-------CchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 481 VVVWGALFFACRLHGNVSIGERAAMKLLELDPQD-------SGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 481 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
+..+-.++..+.+.|++++|+..+++++++.|.+ +.++..|+.++.+.|++++|++.++++.+..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3445567888999999999999999999876653 3468999999999999999999999998764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=1.4e-05 Score=77.09 Aligned_cols=126 Identities=8% Similarity=-0.049 Sum_probs=45.1
Q ss_pred CChhHHHHHhccCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHH
Q 007818 361 GNIAKALQVFHEMPE---RNSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFA 437 (588)
Q Consensus 361 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 437 (588)
+.++.|...+....+ ++...+..+...+.+.|+.+.|...+...... .| ..++..+...+...|++++|...|+
T Consensus 100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y~ 176 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYYR 176 (497)
T ss_dssp HHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 344444444443322 23334444445555555555555544443321 11 1234444555555555555555555
Q ss_pred HhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHhHHHHHHHHH
Q 007818 438 QMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-P-MAADVVVWGALFFAC 491 (588)
Q Consensus 438 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~ 491 (588)
++.+. .|.+...|+.|+..+...|+..+|...|.+. . ..|-+.++..+...+
T Consensus 177 ~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 177 HAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 55542 2223445555555555555555555555443 1 223444444444433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.44 E-value=0.00062 Score=53.49 Aligned_cols=92 Identities=14% Similarity=0.026 Sum_probs=56.6
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCC----------hHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCC----
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPK----------LKHYSCMVDLLGRSGLLEEAEQLIRSMP--------MAAD---- 480 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~---- 480 (588)
+...|++++|+..|++..+...-.|+ ...|+.+..+|...|++++|.+.+++.. ..++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 34445555555555555443111111 2456667777777777777776666541 1121
Q ss_pred -HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCC
Q 007818 481 -VVVWGALFFACRLHGNVSIGERAAMKLLELDPQD 514 (588)
Q Consensus 481 -~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~ 514 (588)
...+..+..++...|++++|+..|++++++.|..
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 2245667788889999999999999998876643
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.39 E-value=8.2e-05 Score=64.27 Aligned_cols=121 Identities=12% Similarity=0.057 Sum_probs=85.7
Q ss_pred hccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HhHHHHHHHHHHhhCCHHHH
Q 007818 423 CCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSM-PMAAD-VVVWGALFFACRLHGNVSIG 500 (588)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~A 500 (588)
..+.|++++|+..+++..+ ..|.+...+..++..|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4567999999999999998 45667899999999999999999999999987 34564 44444444444433333333
Q ss_pred HHHHHHHhc-cCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 501 ERAAMKLLE-LDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 501 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
.....+... ..|++...+...+..+...|++++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 222222111 223334445566788889999999999999997764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.30 E-value=0.002 Score=51.52 Aligned_cols=120 Identities=14% Similarity=0.167 Sum_probs=62.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCCChhHHHHHHHHHHh
Q 007818 47 NVAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDVDMYVHNAVIHVFVS 126 (588)
Q Consensus 47 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (588)
..........|++++|.+.|.+... +-+.... .......-+...-..+.. .....+..+...+..
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~---l~rG~~l--------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALR---EWRGPVL--------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT---TCCSSTT--------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh---hCccccc--------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3444677788888888888888876 2222110 000000111111111111 112344555666666
Q ss_pred CCChhHHHHHhccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHH-----CCCCCCcc
Q 007818 127 CGDLGLACNVFDES---CVRNLVSWNSLINGFVRSGFPREAIRLFRDMQL-----ERVEPDEV 181 (588)
Q Consensus 127 ~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~ 181 (588)
.|++++|+..+++. .+.+...|..++.++.+.|++++|++.|+++.. .|+.|+..
T Consensus 80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 66666666666652 334555666666666666666666666666532 35555543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.12 Score=48.03 Aligned_cols=81 Identities=14% Similarity=-0.004 Sum_probs=38.3
Q ss_pred cCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC--HhHHHHHHHHHHhhCCHHHHHH
Q 007818 425 HGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEEAEQLIRSMPMAAD--VVVWGALFFACRLHGNVSIGER 502 (588)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~ 502 (588)
..+..+.+..++...... ..+.......+....+.+++..+...++.+...|. ..-.-=+..++...|+.+.|..
T Consensus 264 ~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~ 340 (450)
T d1qsaa1 264 GNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKE 340 (450)
T ss_dssp STTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHH
Confidence 344455555555544432 12333333334444455666666666666643321 1111112344555666666666
Q ss_pred HHHHHh
Q 007818 503 AAMKLL 508 (588)
Q Consensus 503 ~~~~~~ 508 (588)
.+..+.
T Consensus 341 ~~~~~a 346 (450)
T d1qsaa1 341 ILHQLM 346 (450)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.60 E-value=0.0099 Score=44.67 Aligned_cols=51 Identities=16% Similarity=0.029 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHhccCCCCCchHHHHHHHHHc----cCChHHHHHHHHHHHhcCCc
Q 007818 495 GNVSIGERAAMKLLELDPQDSGIYVLLANMYRD----SNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 495 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 547 (588)
.+.++|...++++.+.. ++.+...|+.+|.. ..+.++|.+++++..+.|.+
T Consensus 73 ~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred hhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 46777888888877654 46677788888776 45788888888888877754
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.51 E-value=0.06 Score=38.34 Aligned_cols=141 Identities=12% Similarity=0.036 Sum_probs=96.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHhcCChHH
Q 007818 388 LALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGRSGLLEE 467 (588)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (588)
+...|..++..+++.+.... .+..-|+.++--....-+-+...+.++.+-+-+.+. .+++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 45567777888877777663 345556666665555566666666666665433222 2333333
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCchHHHHHHHHHccCChHHHHHHHHHHHhcCCc
Q 007818 468 AEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGIYVLLANMYRDSNMWEEAGKVRKMMEERGVE 547 (588)
Q Consensus 468 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 547 (588)
....+-.+. .+...+...+.....+|.-++-..+++.+++.+..+|..+..++.+|.+.|...++.+++.++-++|..
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333331 233445556677788999999999999988877778999999999999999999999999999998875
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.27 E-value=0.0083 Score=43.45 Aligned_cols=71 Identities=14% Similarity=0.065 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHHHhcC---ChHHHHHHHHhCC-CCC-C-HhHHHHHHHHHHhhCCHHHHHHHHHHHhccCCCCCch
Q 007818 447 PKLKHYSCMVDLLGRSG---LLEEAEQLIRSMP-MAA-D-VVVWGALFFACRLHGNVSIGERAAMKLLELDPQDSGI 517 (588)
Q Consensus 447 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 517 (588)
++..+--.++.++.++. +.++++.+++++- ..| + ...+-.+.-+|.+.|++++|...++++++.+|+|..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 33444444455555443 2344555555441 122 2 2344444445555566666666666666666555443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.54 E-value=0.12 Score=38.37 Aligned_cols=111 Identities=13% Similarity=-0.001 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHHHHHh----cCChHHH
Q 007818 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVDLLGR----SGLLEEA 468 (588)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 468 (588)
++++|+++|++..+.| .|.. ...+. .....+.++|.+++++..+. + ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g-~~~a--~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-EMFG--CLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CTTH--HHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCC-Chhh--hhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 5678888888887776 2322 22222 33456788888888888764 3 44555666666654 4567888
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHh----hCCHHHHHHHHHHHhccCC
Q 007818 469 EQLIRSMPMAADVVVWGALFFACRL----HGNVSIGERAAMKLLELDP 512 (588)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~p 512 (588)
.++|++....-++.....+...|.. ..|.++|...++++.++..
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 8998887544455566666666654 4588899999998887664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.17 E-value=0.32 Score=34.53 Aligned_cols=64 Identities=11% Similarity=0.026 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCC
Q 007818 380 TYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRL 445 (588)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (588)
.+..-++.+..+|+-++-.+++..+.+.+ .|++.....+..+|.+.|+..++.+++.++-++ |.
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hH
Confidence 34455666777778777777877776654 777777777888888888888888888877765 54
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.13 E-value=0.13 Score=37.07 Aligned_cols=67 Identities=7% Similarity=-0.028 Sum_probs=47.8
Q ss_pred CCHhHHHHHHHHHHhhC---CHHHHHHHHHHHhccCCCCC-chHHHHHHHHHccCChHHHHHHHHHHHhcC
Q 007818 479 ADVVVWGALFFACRLHG---NVSIGERAAMKLLELDPQDS-GIYVLLANMYRDSNMWEEAGKVRKMMEERG 545 (588)
Q Consensus 479 ~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 545 (588)
|...+--....++.++. +.++|+.+++++++.+|.+. ..+..|+.+|.+.|++++|+++++.+.+..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 45555556666665543 45678888888888777654 577788888888888888888888887654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=1.3 Score=40.62 Aligned_cols=416 Identities=8% Similarity=-0.060 Sum_probs=230.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHHhcCCC-ChhHHHHHHHHHHh
Q 007818 48 VAIRGFLETGKMREAVDLYKQMLRNGGTRPDNFTYPLLFKVCASLGLRFLGYEIFGHVLKLGFDV-DMYVHNAVIHVFVS 126 (588)
Q Consensus 48 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 126 (588)
..+....+.|+..++..+...+.. . | ...|-..-..-...++. ...++..-+.+..-.| .......-+..+.+
T Consensus 11 ~~a~~a~~~~~~~~~~~~~~~L~d-y---p-L~pYl~~~~l~~~~~~~-~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~ 84 (450)
T d1qsaa1 11 AQIKQAWDNRQMDVVEQMMPGLKD-Y---P-LYPYLEYRQITDDLMNQ-PAVTVTNFVRANPTLPPARTLQSRFVNELAR 84 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHSGGGTT-S---T-THHHHHHHHHHHTGGGC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhhhcC-C---C-CHHHHHHHHHHhccccC-CHHHHHHHHHHCCCChhHHHHHHHHHHHHHh
Confidence 344556678888887777766633 2 2 22333222222222211 1223333333321111 11223344567778
Q ss_pred CCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCcchHHHHHHHHhccCChhHHHHHHHHH
Q 007818 127 CGDLGLACNVFDESCVRNLVSWNSLINGFVRSGFPREAIRLFRDMQLERVEPDEVTMIGMVSACAQLEDLNLGREIHWYI 206 (588)
Q Consensus 127 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 206 (588)
.+++......+... +.+...--....+....|+.+.|.+.+..+-..|. .....+. .++..+
T Consensus 85 ~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~----------------~l~~~~ 146 (450)
T d1qsaa1 85 REDWRGLLAFSPEK-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACD----------------KLFSVW 146 (450)
T ss_dssp TTCHHHHHHHCCSC-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHH----------------HHHHHH
T ss_pred ccCHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHH----------------HHHHHH
Confidence 88888877766542 23444444567778888999999888877755442 2222233 333333
Q ss_pred HHhCCCCChhhHHHHHHHHHhcCChhHHHHHHHhcCCCCcchHHHHHHHHHhcCCHHHHHHHhhhCCCCCcccHHHHHHH
Q 007818 207 SESGLTLTVPLANALMDMYVKCGKLESAEEIFDSMVNKTVVSCTTMIVGYAKFGFLDIARKIFDDLPEKYVVPWNAIIGG 286 (588)
Q Consensus 207 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 286 (588)
.+.|. ++...+-.-+......|++..|..++..+...........+....+..... ....... .+......+..+
T Consensus 147 ~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~---~~~~~~~-~~~~~~~~~~~~ 221 (450)
T d1qsaa1 147 RASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVL---TFARTTG-ATDFTRQMAAVA 221 (450)
T ss_dssp HHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHH---HHHHHSC-CCHHHHHHHHHH
T ss_pred HhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHH---HHHhcCC-CChhhhHHHHHH
Confidence 33332 355555566677778899999998888776554444555555443332222 2222221 122222222223
Q ss_pred HHh--cCChHHHHHHHHHHHHCC-CCCCHHH-HH-HHHHHHcccCChhHHHHHHHHHHHhCCCCcchHHHHHHHHhHhcC
Q 007818 287 YVQ--AKRSKEALALFHEMQATG-IKPDAVT-TV-HCLSACSQLGALDDGIWIHRFIEKENFNLNVVLGTALVDMYAKCG 361 (588)
Q Consensus 287 ~~~--~~~~~~a~~~~~~~~~~~-~~p~~~~-~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 361 (588)
+.+ ..+.+.+..++....... ..++... .. .+.......+..+.+...+......+. +.......+......+
T Consensus 222 l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~ 299 (450)
T d1qsaa1 222 FASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTG 299 (450)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHT
T ss_pred HHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcC
Confidence 322 357788888888876643 2222211 11 222233455667777777766655542 3344445566667789
Q ss_pred ChhHHHHHhccCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHH
Q 007818 362 NIAKALQVFHEMPER---NSLTYTAIIGGLALHGKALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQ 438 (588)
Q Consensus 362 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 438 (588)
++..+...+..+... .....-=+..++...|+.+.|...|..... .++ -|..+...-... .+.
T Consensus 300 ~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa~~Lg~-~~~-------- 365 (450)
T d1qsaa1 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAAQRIGE-EYE-------- 365 (450)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHHHHTTC-CCC--------
T ss_pred ChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHHHHcCC-CCC--------
Confidence 999999999998743 222334567888899999999999998864 233 344443322111 000
Q ss_pred hhhh-cCCCCChH----HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHhHHHHHHHHHHhhCCHHHHHHHHHHHh
Q 007818 439 MSSI-FRLSPKLK----HYSCMVDLLGRSGLLEEAEQLIRSMPMAADVVVWGALFFACRLHGNVSIGERAAMKLL 508 (588)
Q Consensus 439 ~~~~-~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 508 (588)
+... ....+... .-..-+..+...|+...|...+..+....+......+.....+.|.++.|+....++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 366 LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 0000 00000100 0112356677889999999988766444456666777777888999999998887763
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.83 E-value=0.69 Score=31.05 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccCCchHHHHHHHHHhhhhcCCCCChHHHHHHHH
Q 007818 393 KALDAISYFSEMIGVGLMPDEITFLGILSACCHGGLVDEGRKYFAQMSSIFRLSPKLKHYSCMVD 457 (588)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 457 (588)
+.-++.+-+..+....+-|++......+++|-+.+|+..|.++++.++.+- .++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~--~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCcHHHHHHHHH
Confidence 445667777778888889999999999999999999999999999998753 334556666554
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