Citrus Sinensis ID: 007826

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------59
MISATDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYSMNFKFILADTVQKIIVLLLLAIWSKLSSSGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQFPDTAGSIISFKVDSDIISLDGKEPLQTEAEVGEDGKLHVTVRKSASSRSEIFSRRSHGPNSGVSLTPRPSNLTNCEIYSLQSSRNHTPRGSSFNHTDVFSMVNGKNMSNVSPRQSNFGNLGFDEENGVGVFGNVNRANGGPYPVPTTAGIFSPVSGAMRKANGAENGKDLHMFVWSSSASPVSEGGLHVFRGGDDLGGVHQKDYGEFGRDEFSFGNRPVTNGVENEGPVLSKLGSSSTTELNPKSVAQGEPKPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPITLVYYILLGL
cccccHHHHHHHHHHHHHHHHHHHHHHEEEEEcccHHHHHHHHHHHHHHHHccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHccccccccEEEHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEEccccccHHccccccccccccccccccccccccEEEEEEccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHEccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEHccccccEEEHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEcccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccEEEEEccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccHHccccccccccccccccccccccccHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
MISATDLYHVLTAVVPLYVAMILAYGSvkwwkiftpdqcsgINRFVALFAVPLlsfhfistndpysmnfKFILADTVQKIIVLLLLAIWSKlsssgslewSITLFslstlpntlvmgipllkgmygdysgSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAeqfpdtagsiisfkvdsdiisldgkeplqteaevgedgkLHVTVRKSASSRSEIFsrrshgpnsgvsltprpsnltnceiyslqssrnhtprgssfnhtdvfsmvngknmsnvsprqsnfgnlgfdeengvgvfgnvnranggpypvpttagifspvsgamrkangaengkdLHMFVWsssaspvsegglhvfrggddlggvhqkdygefgrdefsfgnrpvtngvenegpvlsklgsssttelnpksvaqgepkptampptsVMTRLILIMVWRKLirnpntysSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAalpqgivpFVFAkeynvhpdiLSTAVIFGMLVALPITLVYYILLGL
MISATDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYSMNFKFILADTVQKIIVLLLLAIWSKLSSSGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQFPDTAGSIISFKVDSDIISLDGKEPLQteaevgedgklhvtvrksassrseifsrrshgpnsgvsltprpsnLTNCEIYSLQssrnhtprgssFNHTDVFSMVNGKNMSNVSPRQSNFGNLGFDEENGVGVFGNVNRANGGPYPVPTTAGIFSPVSGAMRKANGAENGKDLHMFVWSSSASPVSEGGLHVFRGGDDLGGVHQKDYGEFGRDEFSFGNRPVTNGVENEGPVLSKlgsssttelnpksvaqgepkptampptsVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPITLVYYILLGL
MISATDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYSMNFKFILADTVQKIIVLLLLAIwsklsssgslewsITLFSLSTLPNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQFPDTAGSIISFKVDSDIISLDGKEPLQTEAEVGEDGKLHVTVRKSASSRSEIFSRRSHGPNSGVSLTPRPSNLTNCEIYSLQSSRNHTPRGSSFNHTDVFSMVNGKNMSNVSPRQSNFGNLGFDEENGVGVFGNVNRANGGPYPVPTTAGIFSPVSGAMRKANGAENGKDLHMFVWSSSASPVSEGGLHVFRGGDDLGGVHQKDYGEFGRDEFSFGNRPVTNGVENEGPVLSKLGSSSTTELNPKSVAQGEPKPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPITLVYYILLGL
****TDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYSMNFKFILADTVQKIIVLLLLAIWSKLSSSGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQFPDTAGSIISFKVDSDIISL****************************************************************************************************LGFDEENGVGVFGNVNRANGGPYPVPTTAGIFS****************DLHMFVWS********GGLHVFRGGDDLGGVHQKDYGEFG****************************************************VMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPITLVYYILL**
**SATDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYSMNFKFILADTVQKIIVLLLLAIWSKLSSSGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARML**************************************************************************SNLTNCEIYSL*********************************************************************************************VW***************************************************************************************TRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPITLVYYILLGL
MISATDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYSMNFKFILADTVQKIIVLLLLAIWSKLSSSGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQFPDTAGSIISFKVDSDIISLDGKEPLQTEAEVGEDGKLHVTVRKSASSRSEIFSRRSHGPNSGVSLTPRPSNLTNCEIYSLQSSRNHTPRGSSFNHTDVFSMVNGKNMSNVSPRQSNFGNLGFDEENGVGVFGNVNRANGGPYPVPTTAGIFSPVSGAMRKANGAENGKDLHMFVWSSSASPVSEGGLHVFRGGDDLGGVHQKDYGEFGRDEFSFGNRPVTNGVENEGPVLSKL**********************MPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPITLVYYILLGL
MISATDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYSMNFKFILADTVQKIIVLLLLAIWSKLSSSGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQFPDTAGSIISFKVDSDIISLDGKEPLQTEAEVGEDGKLHVTVRKS**********************PRPSNLTNCEIYSLQSSRNHTPRGSSFNHTDVFSMVNGK*************************************************************GKDLHMFVWSSS****************************************************************************AMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPITLVYYILLGL
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oooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
oooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
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oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
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MISATDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTNDPYSMNFKFILADTVQKIIVLLLLAIWSKLSSSGSLEWSITLFSLSTLPNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQFPDTAGSIISFKVDSDIISLDGKEPLQTEAEVGEDGKLHVTVRKSASSRSEIFSRRSHGPNSGVSLTPRPSNLTNCEIYSLQSSRNHTPRGSSFNHTDVFSMVNGKNMSNVSPRQSNFGNLGFDEENGVGVFGNVNRANGGPYPVPTTAGIFSPVSGAMRKANGAENGKDLHMFVWSSSASPVSEGGLHVFRGGDDLGGVHQKDYGEFGRDEFSFGNRPVTNGVENEGPVLSKLGSSSTTELNPKSVAQGEPKPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPITLVYYILLGL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query588 2.2.26 [Sep-21-2011]
Q67UL3592 Probable auxin efflux car yes no 0.967 0.961 0.680 0.0
Q5SMQ9595 Auxin efflux carrier comp no no 0.962 0.951 0.664 0.0
Q9C6B8622 Auxin efflux carrier comp yes no 0.950 0.898 0.631 0.0
P0C0X5554 Probable auxin efflux car no no 0.913 0.969 0.674 0.0
Q8RWZ6616 Auxin efflux carrier comp no no 0.959 0.915 0.606 0.0
Q9S7Z8640 Auxin efflux carrier comp no no 0.960 0.882 0.600 0.0
Q940Y5619 Auxin efflux carrier comp no no 0.967 0.919 0.617 0.0
Q9LU77647 Auxin efflux carrier comp no no 0.981 0.891 0.572 0.0
Q651V6630 Probable auxin efflux car no no 0.982 0.917 0.576 0.0
Q5VP70618 Probable auxin efflux car no no 0.930 0.885 0.588 0.0
>sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1 Back     alignment and function desciption
 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/611 (68%), Positives = 467/611 (76%), Gaps = 42/611 (6%)

Query: 1   MISATDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60
           MI+  D YHV+TA+VPLYVAMILAYGSVKWW+IFTPDQCSGINRFVALFAVPLLSFHFIS
Sbjct: 1   MITGADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61  TNDPYSMNFKFILADTVQKIIVLLLLAIWSKLSSSGSLEWSITLFSLSTLPNTLVMGIPL 120
           TN+PY+MN +FI ADT+QK+IVL LL +WS LS  GSLEW+ITLFSLSTLPNTLVMGIPL
Sbjct: 61  TNNPYTMNLRFIAADTLQKLIVLALLTLWSHLSRRGSLEWTITLFSLSTLPNTLVMGIPL 120

Query: 121 LKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQFPDTAGSIISFKVDSD 180
           LKGMYG++SGSLMVQIVVLQCIIWYTLMLF+FEYRGAR+LI EQFPDTAG+I S  VD+D
Sbjct: 121 LKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARILITEQFPDTAGAIASIVVDAD 180

Query: 181 IISLDGKEPL-QTEAEVGEDGKLHVTVRKSASSRSEIFSRRSHGPNSGVSLTPRPSNLTN 239
           ++SLDG+  + +TEAEV EDGK+HVTVR+S +SRS+++SRRS G +   S TPRPSNLTN
Sbjct: 181 VVSLDGRRDMIETEAEVKEDGKIHVTVRRSNASRSDVYSRRSMGFS---STTPRPSNLTN 237

Query: 240 CEIYSLQSSRNHTPRGSSFNHTDVFSMVNGKN----------MSNVSPRQSNFGNLGFDE 289
            EIYSLQSSRN TPRGSSFNHTD +SMV   +           +  +PR SN+      E
Sbjct: 238 AEIYSLQSSRNPTPRGSSFNHTDFYSMVGRSSNFAAGDAFGVRTGATPRPSNY------E 291

Query: 290 ENGVGVFGNVNRANGGPYPVPTTAGIFSPVSGAMRKANG-AENGKDLHMFVWSSSASPVS 348
           E+      N   +  G YP P  A    P            E+GKDLHMFVWSSSASPVS
Sbjct: 292 EDAAA--PNKAGSKYGQYPAPNPAMAAPPKPKKAANGQAKGEDGKDLHMFVWSSSASPVS 349

Query: 349 EGGLHVFRGG---DDLGGVHQ--------KDYGEFGRDEFSFGNRPVTNGVENEGPVLSK 397
           +    VF  G   +D   V +        +      RD+FSFGNR V       G   S 
Sbjct: 350 D----VFGNGAEYNDAAAVKEVRMAVASPRKADGVERDDFSFGNRGVAERDAEAGDEKSV 405

Query: 398 LGSSSTTELNPKSVAQGEPKPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLV 457
             + S     P       P PTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGL WSLV
Sbjct: 406 AAAVSGEHGKPGLT----PAPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLV 461

Query: 458 SFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVG 517
            FRW+ EMPAII +SI+ILSDAGLGMAMFSLGLFMALQPRIIACGN +ATFAM VRFL G
Sbjct: 462 CFRWNFEMPAIILKSISILSDAGLGMAMFSLGLFMALQPRIIACGNKVATFAMAVRFLTG 521

Query: 518 PAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALP 577
           PAVMAAAS+AVGLRG+LLHVAIVQAALPQGIVPFVFAKEY+VHPDILSTAVIFGML+ALP
Sbjct: 522 PAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYSVHPDILSTAVIFGMLIALP 581

Query: 578 ITLVYYILLGL 588
           ITLVYYILLGL
Sbjct: 582 ITLVYYILLGL 592
May act as a component of the auxin efflux carrier.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q5SMQ9|PIN1_ORYSJ Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1 Back     alignment and function description
>sp|Q9C6B8|PINI_ARATH Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1 Back     alignment and function description
>sp|P0C0X5|PIN1B_ORYSJ Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1 Back     alignment and function description
>sp|Q8RWZ6|PIN4_ARATH Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1 Back     alignment and function description
>sp|Q9S7Z8|PIN3_ARATH Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1 Back     alignment and function description
>sp|Q940Y5|PIN7_ARATH Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2 Back     alignment and function description
>sp|Q9LU77|PIN2_ARATH Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2 Back     alignment and function description
>sp|Q651V6|PIN2_ORYSJ Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1 Back     alignment and function description
>sp|Q5VP70|PIN3A_ORYSJ Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query588
225440093597 PREDICTED: probable auxin efflux carrier 0.996 0.981 0.849 0.0
225440099599 PREDICTED: probable auxin efflux carrier 0.996 0.978 0.848 0.0
225440097591 PREDICTED: probable auxin efflux carrier 0.993 0.988 0.852 0.0
225440091611 PREDICTED: probable auxin efflux carrier 0.996 0.959 0.830 0.0
225440101600 PREDICTED: probable auxin efflux carrier 0.996 0.976 0.843 0.0
359481415619 PREDICTED: probable auxin efflux carrier 0.996 0.946 0.819 0.0
255552545613 Auxin efflux carrier component, putative 0.994 0.954 0.855 0.0
224137666588 auxin efflux carrier component [Populus 0.991 0.991 0.853 0.0
224086797587 auxin efflux carrier component [Populus 0.989 0.991 0.844 0.0
21435940588 PIN1-like auxin transport protein [Popul 0.991 0.991 0.851 0.0
>gi|225440093|ref|XP_002282650.1| PREDICTED: probable auxin efflux carrier component 1c-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1027 bits (2655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/599 (84%), Positives = 548/599 (91%), Gaps = 13/599 (2%)

Query: 1   MISATDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60
           MIS TDLYHVLTAVVPLYVAMILAYGSVKWWKIF+PDQCSGINRFVALFAVPLLSFHFIS
Sbjct: 1   MISITDLYHVLTAVVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIS 60

Query: 61  TNDPYSMNFKFILADTVQKIIVLLLLAIWSKLSSSGSLEWSITLFSLSTLPNTLVMGIPL 120
           TN+PY+MN++FI ADT+QKIIVL++LAIWS+ SS G LEWSITLFSLSTLPNTLVMGIPL
Sbjct: 61  TNNPYAMNYRFIAADTLQKIIVLVVLAIWSRTSSRGCLEWSITLFSLSTLPNTLVMGIPL 120

Query: 121 LKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQFPDTAGSIISFKVDSD 180
           +KGMYG+ SG+LMVQIVVLQCIIWYTLMLFLFEYRGAR+LI EQFPDTAGSIISF+VDSD
Sbjct: 121 MKGMYGEASGTLMVQIVVLQCIIWYTLMLFLFEYRGARLLIVEQFPDTAGSIISFRVDSD 180

Query: 181 IISLDGKEPLQTEAEVGEDGKLHVTVRKSASSRSEIFSRRSHGPNSGVSLTPRPSNLTNC 240
           IISLDGKEPLQTEAEVGEDGKLHVTVRKS SSRSEIFSRRSHGPNSGVSLTPRPSNLTN 
Sbjct: 181 IISLDGKEPLQTEAEVGEDGKLHVTVRKSTSSRSEIFSRRSHGPNSGVSLTPRPSNLTNA 240

Query: 241 EIYSLQSSRNHTPRGSSFNHTDVFSMVNGKNMSNVSPRQSNFGNLGFDEENGVGVFGNVN 300
           EIYSLQSSRN TPRGSSFNHTD +SMVNGKNM+NVSPRQSNFGNL FDEENG+G F N  
Sbjct: 241 EIYSLQSSRNPTPRGSSFNHTDFYSMVNGKNMNNVSPRQSNFGNLTFDEENGIGGFPNPP 300

Query: 301 RAN-----GGPYPVPTTAGIFSPVS--GAMRKANGAENGKDLHMFVWSSSASPVSEGGLH 353
           RAN     GG YP P +AGIFSPV+  GA +KANGA+ GKDLHMFVWSSSASPVSEGG+H
Sbjct: 301 RANGVYSQGGGYPAPPSAGIFSPVAGPGAKKKANGADGGKDLHMFVWSSSASPVSEGGIH 360

Query: 354 VFRGGD---DLGGV-HQKDYGEFGRDEFSFGNRPVTNGVENEGPVLSKLGSSSTTELNPK 409
           VFRGGD   +LGGV H KDY EFG+DEFSFGNR   NG + EGP +SKLGSSSTTEL+PK
Sbjct: 361 VFRGGDYGNELGGVPHTKDYDEFGQDEFSFGNRASVNGGDREGPTMSKLGSSSTTELHPK 420

Query: 410 SVAQGEPKPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAII 469
           +  Q   KPT+MPP SVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSF+W +EMPAII
Sbjct: 421 TAPQS--KPTSMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFKWEIEMPAII 478

Query: 470 ARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVG 529
           A+SI+ILSDAGLGMAMFSLGLFMALQP+IIACGN++ATFAM VRFL GPAVMAAAS+AVG
Sbjct: 479 AKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFAMAVRFLTGPAVMAAASIAVG 538

Query: 530 LRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALPITLVYYILLGL 588
           LRG LLH+AIVQAALPQGIVPFVFAKEYNVHPDILST VIFGML+ALPITLVYYILLGL
Sbjct: 539 LRGVLLHIAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL 597

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225440099|ref|XP_002282693.1| PREDICTED: probable auxin efflux carrier component 1c-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440097|ref|XP_002282687.1| PREDICTED: probable auxin efflux carrier component 1c-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440091|ref|XP_002282669.1| PREDICTED: probable auxin efflux carrier component 1c-like isoform 4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225440101|ref|XP_002282701.1| PREDICTED: probable auxin efflux carrier component 1c-like isoform 3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359481415|ref|XP_002282640.2| PREDICTED: probable auxin efflux carrier component 1c-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552545|ref|XP_002517316.1| Auxin efflux carrier component, putative [Ricinus communis] gi|223543579|gb|EEF45109.1| Auxin efflux carrier component, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224137666|ref|XP_002322614.1| auxin efflux carrier component [Populus trichocarpa] gi|222867244|gb|EEF04375.1| auxin efflux carrier component [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224086797|ref|XP_002307966.1| auxin efflux carrier component [Populus trichocarpa] gi|222853942|gb|EEE91489.1| auxin efflux carrier component [Populus trichocarpa] Back     alignment and taxonomy information
>gi|21435940|gb|AAM54034.1|AF515435_1 PIN1-like auxin transport protein [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query588
UNIPROTKB|Q5SMQ9595 PIN1 "Auxin efflux carrier com 0.972 0.961 0.662 4.3e-196
TAIR|locus:2035037622 PIN1 "AT1G73590" [Arabidopsis 0.620 0.586 0.609 4.8e-110
TAIR|locus:2201225619 PIN7 "AT1G23080" [Arabidopsis 0.678 0.644 0.536 2.9e-103
TAIR|locus:2038781616 PIN4 "AT2G01420" [Arabidopsis 0.591 0.564 0.572 4.7e-103
TAIR|locus:2175559647 EIR1 "AT5G57090" [Arabidopsis 0.622 0.565 0.547 5e-99
TAIR|locus:2013975640 PIN3 "AT1G70940" [Arabidopsis 0.680 0.625 0.514 7.4e-98
TAIR|locus:2147835367 PIN8 "AT5G15100" [Arabidopsis 0.311 0.498 0.559 8e-91
TAIR|locus:2171392351 PIN5 "AT5G16530" [Arabidopsis 0.265 0.444 0.532 1e-86
TAIR|locus:2025312570 PIN6 "AT1G77110" [Arabidopsis 0.481 0.496 0.518 1.1e-71
UNIPROTKB|Q721Y6303 LMOf2365_0848 "Putative membra 0.243 0.471 0.246 2.9e-08
UNIPROTKB|Q5SMQ9 PIN1 "Auxin efflux carrier component 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 1899 (673.5 bits), Expect = 4.3e-196, P = 4.3e-196
 Identities = 405/611 (66%), Positives = 464/611 (75%)

Query:     1 MISATDLYHVLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFIS 60
             MI+A D YHV+TA+VPLYVAMILAYGSVKWW+IFTPDQCSGINRFVALFAVPLLSFHFIS
Sbjct:     1 MITAADFYHVMTAMVPLYVAMILAYGSVKWWRIFTPDQCSGINRFVALFAVPLLSFHFIS 60

Query:    61 TNDPYSMNFKFILADTVQKIIVLLLLAIXXXXXXXXXXXXXITLFSLSTLPNTLVMGIPL 120
             TN+PY+MN +FI ADT+QK++VL +L               ITLFSLSTLPNTLVMGIPL
Sbjct:    61 TNNPYTMNLRFIAADTLQKLMVLAMLTAWSHLSRRGSLEWTITLFSLSTLPNTLVMGIPL 120

Query:   121 LKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQFPDTAGSIISFKVDSD 180
             LKGMYG++SGSLMVQIVVLQCIIWYTLMLF+FEYRGARMLI EQFPDTA +I S  VD D
Sbjct:   121 LKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARMLITEQFPDTAANIASIVVDPD 180

Query:   181 IISLDGK-EPLQTEAEVGEDGKLHVTVRKSASSRSEIFSRRSHGPNSGVSLTPRPSNLTN 239
             ++SLDG+ + ++TE EV EDG++HVTVR+S +SRS+I+SRRS G +S    TPRPSNLTN
Sbjct:   181 VVSLDGRRDAIETETEVKEDGRIHVTVRRSNASRSDIYSRRSMGFSS---TTPRPSNLTN 237

Query:   240 CEIYSLQSSRNHTPRGSSFNHTDVFSMVN-GKNM---------SNVSPRQSNFGNLGFDE 289
              EIYSLQSSRN TPRGSSFNHTD +SMV    N          +  +PR SN+ +   D 
Sbjct:   238 AEIYSLQSSRNPTPRGSSFNHTDFYSMVGRSSNFGAADAFGVRTGATPRPSNYED---DA 294

Query:   290 ENGVGVFGNVNRAN-GGPYPVPTTAGIFSPVSGAMRKA-NGAENGKDLHMFVWSSSASPV 347
                       N A   G YP P  A + S   GA + A NG   G+DLHMFVWSSSASPV
Sbjct:   295 SKPKYPLPASNAAPMAGHYPAPNPA-VSSAPKGAKKAATNGQAKGEDLHMFVWSSSASPV 353

Query:   348 SE---GGLHVFRGGDDL-------GGVHQKDYGEFGRDEFSFGNRPVTNGVENEGPVLSK 397
             S+   GG   +     +       G   ++DY E  RD+FSFGNR V +     G    K
Sbjct:   354 SDVFGGGAPDYNDAAAVKSPRKMDGAKDREDYVE--RDDFSFGNRGVMDRDAEAGD--EK 409

Query:   398 LGSSSTTELNPKSVAQGEPKPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLV 457
               +++  + + K++A     PTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGL WSLV
Sbjct:   410 AAAAAGADPS-KAMAA----PTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLIWSLV 464

Query:   458 SFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRIIACGNTIATFAMGVRFLVG 517
              FRW+ EMPAI+ +SI+ILSDAGLGMAMFSLGLFMALQP IIACGN +AT+AM VRFL G
Sbjct:   465 CFRWNFEMPAIVLKSISILSDAGLGMAMFSLGLFMALQPHIIACGNKVATYAMAVRFLAG 524

Query:   518 PAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVALP 577
             PAVMAAAS AVGLRG+LLHVAIVQAALPQGIVPFVFAKEY+VHP ILSTAVIFGML+ALP
Sbjct:   525 PAVMAAASFAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYSVHPSILSTAVIFGMLIALP 584

Query:   578 ITLVYYILLGL 588
             ITLVYYILLGL
Sbjct:   585 ITLVYYILLGL 595
GO:0005215 "transporter activity" evidence=IMP
GO:0006810 "transport" evidence=IMP
GO:0009734 "auxin mediated signaling pathway" evidence=IMP
GO:0009921 "auxin efflux carrier complex" evidence=IMP
GO:0016020 "membrane" evidence=ISS
GO:0016021 "integral to membrane" evidence=ISS
GO:0048830 "adventitious root development" evidence=IMP
TAIR|locus:2035037 PIN1 "AT1G73590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201225 PIN7 "AT1G23080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038781 PIN4 "AT2G01420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175559 EIR1 "AT5G57090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013975 PIN3 "AT1G70940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147835 PIN8 "AT5G15100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171392 PIN5 "AT5G16530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025312 PIN6 "AT1G77110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q721Y6 LMOf2365_0848 "Putative membrane protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q67UL3PIN1C_ORYSJNo assigned EC number0.68080.96760.9611yesno
Q9C6B8PINI_ARATHNo assigned EC number0.63130.95060.8987yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query588
TIGR00946321 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam 8e-58
pfam03547321 pfam03547, Mem_trans, Membrane transport protein 2e-55
pfam03547321 pfam03547, Mem_trans, Membrane transport protein 3e-51
TIGR00946321 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam 4e-47
COG0679311 COG0679, COG0679, Predicted permeases [General fun 8e-15
COG0679311 COG0679, COG0679, Predicted permeases [General fun 1e-09
>gnl|CDD|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information 
 Score =  196 bits (499), Expect = 8e-58
 Identities = 79/161 (49%), Positives = 102/161 (63%), Gaps = 6/161 (3%)

Query: 427 MTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMF 486
            TRL+LI VW+KLI+ P  ++ L+ +  SLV F+    MP +I +SI+ILS A   MA+F
Sbjct: 167 STRLMLIFVWKKLIKFPPLWAPLLSVILSLVGFK----MPGLILKSISILSGATTPMALF 222

Query: 487 SLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQ 546
           SLG  +AL PR I  G   A  A+ VRFLV PAVMA  S  +GLRG  L VAI+QAALP 
Sbjct: 223 SLG--LALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPG 280

Query: 547 GIVPFVFAKEYNVHPDILSTAVIFGMLVALPITLVYYILLG 587
           G V  V A EY V  ++ STAV    +++L    ++ ILLG
Sbjct: 281 GAVAAVLATEYEVDVELASTAVTLSTVLSLISLPLFIILLG 321

[Transport and binding proteins, Other]. Length = 321
>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein Back     alignment and domain information
>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein Back     alignment and domain information
>gnl|CDD|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only] Back     alignment and domain information
>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 588
PF03547385 Mem_trans: Membrane transport protein; InterPro: I 100.0
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 100.0
PRK09903314 putative transporter YfdV; Provisional 100.0
COG0679311 Predicted permeases [General function prediction o 100.0
KOG2722408 consensus Predicted membrane protein [Function unk 99.79
TIGR00841 286 bass bile acid transporter. Functionally character 99.02
TIGR00832 328 acr3 arsenical-resistance protein. The first prote 98.57
COG0385 319 Predicted Na+-dependent transporter [General funct 98.49
PF01758187 SBF: Sodium Bile acid symporter family; InterPro: 98.43
PF13593 313 DUF4137: SBF-like CPA transporter family (DUF4137) 97.87
COG0798 342 ACR3 Arsenite efflux pump ACR3 and related permeas 97.13
PF05684378 DUF819: Protein of unknown function (DUF819); Inte 96.81
PF04172215 LrgB: LrgB-like family ; InterPro: IPR007300 The t 96.35
PRK10711231 hypothetical protein; Provisional 96.24
PRK04288232 antiholin-like protein LrgB; Provisional 96.18
TIGR00659226 conserved hypothetical protein TIGR00659. Members 95.97
COG1346230 LrgB Putative effector of murein hydrolase [Cell e 95.35
TIGR00841286 bass bile acid transporter. Functionally character 94.89
PF03601 305 Cons_hypoth698: Conserved hypothetical protein 698 94.27
COG3329372 Predicted permease [General function prediction on 94.12
TIGR00783347 ccs citrate carrier protein, CCS family. These pro 92.44
PRK03659 601 glutathione-regulated potassium-efflux system prot 91.94
PRK03562 621 glutathione-regulated potassium-efflux system prot 91.04
COG2855 334 Predicted membrane protein [Function unknown] 90.18
PF13593313 DUF4137: SBF-like CPA transporter family (DUF4137) 88.61
PF03812 314 KdgT: 2-keto-3-deoxygluconate permease; InterPro: 88.03
PRK03562 621 glutathione-regulated potassium-efflux system prot 87.31
TIGR00698 335 conserved hypothetical integral membrane protein. 87.07
COG5505384 Predicted integral membrane protein [Function unkn 86.63
PRK10669 558 putative cation:proton antiport protein; Provision 86.5
PRK12460312 2-keto-3-deoxygluconate permease; Provisional 82.55
KOG2718 371 consensus Na+-bile acid cotransporter [Inorganic i 81.44
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea Back     alignment and domain information 
Probab=100.00  E-value=4.6e-46  Score=389.26  Aligned_cols=379  Identities=31%  Similarity=0.442  Sum_probs=305.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccccChhHhhHHHHHHHHHHhHHHHHHHHhcCC-CCCc-cHHHHHHH-HHHHHHHHHHH
Q 007826           10 VLTAVVPLYVAMILAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISTND-PYSM-NFKFILAD-TVQKIIVLLLL   86 (588)
Q Consensus        10 ILsivlPIFlLIalGyla~R~~gi~s~e~~~~LnrfVf~~ALPALLF~alA~~d-l~~v-~~~lllay-~lg~livfll~   86 (588)
                      +++.++|+|+++++||+++|+ |++++++.+.+|++|+|+++|||+|.++++.+ .+++ ++.++..+ .+..++.+++.
T Consensus         2 v~~~i~~i~~ii~~G~~~~~~-~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (385)
T PF03547_consen    2 VFSAILPIFLIILLGYLLGRF-GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG   80 (385)
T ss_pred             cHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            678999999999999999995 99999999999999999999999999999965 4444 55444433 34444445555


Q ss_pred             HHHHHHhcCCCCchhhhhhhh-hcCCccccchHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Q 007826           87 AIWSKLSSSGSLEWSITLFSL-STLPNTLVMGIPLLKGMYGDYSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLIAEQF  165 (588)
Q Consensus        87 ~llar~~~~~~~~~~aaV~aL-asfsNt~fLGiPIl~~lyG~~a~~~valiv~v~~lIl~Pl~lvLlE~~~~~~~~~~~~  165 (588)
                      +++.|+++.++.+  .++..+ ++|+|++++|+|++..+||+++..++.+...++++++++++..++|.+++++...|+.
T Consensus        81 ~~~~~~~~~~~~~--~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~  158 (385)
T PF03547_consen   81 FLLSRLFRLPKEW--RGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE  158 (385)
T ss_pred             HHHHHhcCCCccc--ceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence            6666655554444  577777 9999999999999999999999999999999999999999999999987777666777


Q ss_pred             CCCccccccccccccccccCCCCCccccccccCCCceEEEEeecCCcchhhhhcCCCCCCCCCccCCCCCCCCccccccc
Q 007826          166 PDTAGSIISFKVDSDIISLDGKEPLQTEAEVGEDGKLHVTVRKSASSRSEIFSRRSHGPNSGVSLTPRPSNLTNCEIYSL  245 (588)
Q Consensus       166 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (588)
                      ++++.++.+.++|++....++++|.++|.+.+||++.|.+.+...+++.+..+           .+|+++|.+       
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-------  220 (385)
T PF03547_consen  159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVS-----------TSPSPSNST-------  220 (385)
T ss_pred             ccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhc-----------cCCcccccc-------
Confidence            76677778888999999999999999999999999988877665554443332           011111000       


Q ss_pred             cCCCCCCCCCCCCCccchhhhccCCCCCCCCCCCCCCCCCCCcccCCccccCCccCCCCCCCCCCCCCCccCCccccccc
Q 007826          246 QSSRNHTPRGSSFNHTDVFSMVNGKNMSNVSPRQSNFGNLGFDEENGVGVFGNVNRANGGPYPVPTTAGIFSPVSGAMRK  325 (588)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (588)
                                                                                                      
T Consensus       221 --------------------------------------------------------------------------------  220 (385)
T PF03547_consen  221 --------------------------------------------------------------------------------  220 (385)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCcccceeeecCCCCCCCCCCccccccCCCCCCcccccccccCcCccccCCCCCCCCCCCCCCcccccCCCCccc
Q 007826          326 ANGAENGKDLHMFVWSSSASPVSEGGLHVFRGGDDLGGVHQKDYGEFGRDEFSFGNRPVTNGVENEGPVLSKLGSSSTTE  405 (588)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (588)
                                                                                                      
T Consensus       221 --------------------------------------------------------------------------------  220 (385)
T PF03547_consen  221 --------------------------------------------------------------------------------  220 (385)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCCCCCCCchhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHH
Q 007826          406 LNPKSVAQGEPKPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAM  485 (588)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~lk~vlk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLAL  485 (588)
                             ..+.+      .+.+.+..++..+++.++||++++.++|+++++.+....+.+|+++.+.++++|++++|++|
T Consensus       221 -------~~~~~------~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l  287 (385)
T PF03547_consen  221 -------GAEQK------SSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLAL  287 (385)
T ss_pred             -------hhhhh------hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHH
Confidence                   00000      01124456777888899999999999999999993322333449999999999999999999


Q ss_pred             HHHhhhcccchhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhHHHHHHHcCCChhHHH
Q 007826          486 FSLGLFMALQPRIIACGNTIATFAMGVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILS  565 (588)
Q Consensus       486 f~IG~sLa~~~~~~~~~~k~vl~~sllKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAA  565 (588)
                      |++|+.|+..+......++.....++.|+++.|++++++++++++++....++++++++|+|++.+++|++|+.+++.++
T Consensus       288 ~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s  367 (385)
T PF03547_consen  288 FVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEAS  367 (385)
T ss_pred             HHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHH
Confidence            99999999864332345666677899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 007826          566 TAVIFGMLVALPITLVY  582 (588)
Q Consensus       566 s~V~lSTLLSLpi~i~l  582 (588)
                      ..+++||+++++++.+|
T Consensus       368 ~~~~~~~~~~~~~~~~~  384 (385)
T PF03547_consen  368 SIVFWSTLLSIPTLPLW  384 (385)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998655544

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>PRK09903 putative transporter YfdV; Provisional Back     alignment and domain information
>COG0679 Predicted permeases [General function prediction only] Back     alignment and domain information
>KOG2722 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>TIGR00832 acr3 arsenical-resistance protein Back     alignment and domain information
>COG0385 Predicted Na+-dependent transporter [General function prediction only] Back     alignment and domain information
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [] Back     alignment and domain information
>PRK10711 hypothetical protein; Provisional Back     alignment and domain information
>PRK04288 antiholin-like protein LrgB; Provisional Back     alignment and domain information
>TIGR00659 conserved hypothetical protein TIGR00659 Back     alignment and domain information
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins Back     alignment and domain information
>COG3329 Predicted permease [General function prediction only] Back     alignment and domain information
>TIGR00783 ccs citrate carrier protein, CCS family Back     alignment and domain information
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>COG2855 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi Back     alignment and domain information
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional Back     alignment and domain information
>TIGR00698 conserved hypothetical integral membrane protein Back     alignment and domain information
>COG5505 Predicted integral membrane protein [Function unknown] Back     alignment and domain information
>PRK10669 putative cation:proton antiport protein; Provisional Back     alignment and domain information
>PRK12460 2-keto-3-deoxygluconate permease; Provisional Back     alignment and domain information
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query588
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.4 bits (122), Expect = 7e-07
 Identities = 56/403 (13%), Positives = 109/403 (27%), Gaps = 140/403 (34%)

Query: 146 TLMLF-LFEYRGARMLIAEQFPDTAGSIISFKVDSDIISLDGKEPLQTEA-EVGEDGKLH 203
           TL LF     +     + ++F +        +++   +      P++TE  +     +++
Sbjct: 64  TLRLFWTLLSKQEE--MVQKFVEEV-----LRINYKFL----MSPIKTEQRQPSMMTRMY 112

Query: 204 VTVRKSASSRSEIFSRRSHGPNSGVSLTPRP---SNLTNCEIYSLQSSRN---HTPRGSS 257
           +  R    + +++F++ +      V    R      L    +  L+ ++N       GS 
Sbjct: 113 IEQRDRLYNDNQVFAKYN------V---SRLQPYLKLRQA-LLELRPAKNVLIDGVLGS- 161

Query: 258 FNHTDVFSMVNGK-----NMSNVSPRQSNFGNLGFDEENGVGVF----GNVNRANGGPYP 308
                      GK     ++      Q               +F     N N        
Sbjct: 162 -----------GKTWVALDVCLSYKVQCKMDF---------KIFWLNLKNCNSPETVLEM 201

Query: 309 V---------PTTAGIFSPVSGAMRKANGAENGKDL---HMF---------VWSSSASPV 347
           +           T+      +  +R  +     + L     +         V ++ A   
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA--- 258

Query: 348 SEGGLHVFRGG-------------DDLGGVHQKDYGEFGRDEFSFGNRPVTNGVENEGPV 394
                + F                D L             D  S     +T   E +  +
Sbjct: 259 ----WNAFNLSCKILLTTRFKQVTDFLSAATTT---HISLDHHSMT---LTPD-EVKS-L 306

Query: 395 LSKLGSSSTTELNPKSVAQGEPKPTAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTW 454
           L K       +L P+ V    P               L ++   +             TW
Sbjct: 307 LLKYLDCRPQDL-PREVLTTNP-------------RRLSIIAESIRDGLA--------TW 344

Query: 455 SLVSFRW-HV---EMPAIIARSIAILSDAGLGMAMF-SLGLFM 492
                 W HV   ++  II  S+ +L  A     MF  L +F 
Sbjct: 345 D----NWKHVNCDKLTTIIESSLNVLEPAEY-RKMFDRLSVFP 382
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query588
3zux_A 332 Transporter, ASBTNM; transport protein, membrane p 99.11
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 94.81
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
Probab=99.11  E-value=1.3e-09  Score=113.29  Aligned_cols=146  Identities=14%  Similarity=0.109  Sum_probs=116.9

Q ss_pred             HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccchhhh-hcchhHHHHHH
Q 007826          432 LIMVWRKLIRNPNTYSSLIGLTWSLVSFRWHVEMPAIIARSIAILSDAGLGMAMFSLGLFMALQPRII-ACGNTIATFAM  510 (588)
Q Consensus       432 lk~vlk~ilkNP~IIAiILGLilsllg~~~gi~LP~~L~~~L~~LG~aa~PLALf~IG~sLa~~~~~~-~~~~k~vl~~s  510 (588)
                      ++++. +.+.++..+.+++++++..+       .|+... .++..-..+.++.||..|+.+...+... ..+++......
T Consensus         9 l~~~~-~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l   79 (332)
T 3zux_A            9 LSKIS-SFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGV   79 (332)
T ss_dssp             HHHHH-HHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHH
Confidence            44444 45678889999999888877       343221 2333445678899999999999875221 24567777889


Q ss_pred             HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhccchhhhHHHHHHHcCCChhHHHHHHHHHHHHHH-HHHHHHHHHh
Q 007826          511 GVRFLVGPAVMAAASMAVGLRGSLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTAVIFGMLVAL-PITLVYYILL  586 (588)
Q Consensus       511 llKLIV~PlLa~ll~~lLgL~~~~~~vlVLlAAmPtAv~~~I~A~~Yg~d~elAAs~V~lSTLLSL-pi~i~l~lLL  586 (588)
                      +.+++++|++++++++++++++.....+++++++|++..+.+++..+|+|.+++...+.+||++++ .++++.++++
T Consensus        80 ~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~~~~~~stll~~~~~Pl~~~l~~  156 (332)
T 3zux_A           80 IAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLA  156 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999999999999999999996 5555555444
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00