Citrus Sinensis ID: 007868

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580------
METLVGAEGNGEGQFKESRIHKTNSTFSSPNLGADPVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKLESSEGLSNSENAEADAGKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQCSDQHDTLRGIDEKLQSEIPLQESDLSSQSLSKSLNNQPSIHGECSNSSNGLVEGQRSTSAVYTSSKPEFSRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKLVSKGGEGSCNKEAIEDQAVKPVDGSGKESSLNPGSKMEDQQIVSSERLRTCSKDYSCADEDPLKEQRNAKRIRKPTRRYIEELSEVESKEHGGKSIASVKNLGLGLMSSRSNTRPVRIASSNRITLRLDSLGGSGVQIPYVSRVRRSRPRKNVKALMEFHPNGIGMAAKLVKEAVDVHSSEPNRESGGIVLKASSAPEQIQQQGQNMEPKNKDPSVYTPDDNPATVRAVKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKVWTYIIVLGLAVANNLG
cccEEccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccEEEcccccccccHHHHcccccccccccccccccccccccccccEEHHHHcccccccccccccccHHHHHcccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHHHcccccccc
ccEEEEEEcccccHHHHccEEcccccccccccccccEEEEEEEEcccccEccccHHHHHHHHHHHHccccccccccccccEEEEccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHccHHHHcccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHccccccHHcHHHHHHHHHHccccccccccccEEEEcccEEcccccccEcHHHccccccccccccccccccccccccccHEEEcccccccccccccccccccccHHcccHcccccccEEEEEcccccccccccccccccccccccccccccccccEEccccccEEEEEcccccccEEEccccccccccccHHHHHHcccccccccccHHHHHHHccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccc
metlvgaegngegqfkesrihktnstfsspnlgadpvvYKLVRvdgdgklvpatddELMEVGNLLaddkiemhlvadagptgrcifnersssgmpklesseglsnsenaeadagKLNTHLESIEEMLTKAKQEEShllacgspdhsstyvlvdgqcsdqhdtlrgideklqseiplqesdlssqslskslnnqpsihgecsnssnglvegqrstsavytsskpefsrLMGEICLDNLSIKELHETFKatfgrettvkDKQWLKRRIAMGltnscdvstssfiikdnklvskggegscnkeaiedqavkpvdgsgkesslnpgskmedqqivsserlrtcskdyscadedplkeqrnakrirkPTRRYIEELSeveskehggksiASVKNLGlglmssrsntrpvriassnritlrldslggsgvqipyvsrvrrsrprKNVKALMEFHPNGIGMAAKLVKEAVDvhssepnresggivlkassapeqiqqqgqnmepknkdpsvytpddnpatvravkggvrrkhhraWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKVWTYIIVLGLAVANNLG
metlvgaegngegqfkesrihktnstfsspnlgadpVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKLESSEGLSNSENAEADAGKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQCSDQHDTLRGIDEKLQSEIPLQESDLSSQSLSKSLNNQPSIHGECSNSSNGLVEGQRSTSAVYTSSKPEFSRLMGEICLDNLSIKELHEtfkatfgrettvkdkqWLKRRIAMgltnscdvstssfiikdnklvskggegscnkeaiedqavkpvdgsgkesslnpgskmedqqivsserlrtcskdyscadedplkeqrnakrirkptrRYIEElseveskehggksiaSVKNLGlglmssrsntrpvriassnritlrldslggsgvqipyvsrvrrsrprkNVKALMEFHPNGIGMAAKLVKEAVDVHSSEPNRESGGIVLKASSAPEQIQQQgqnmepknkdpsvytpddnpatvravkggvrrkhhrawtlsevmklVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKVWTYIIVLGLAVANNLG
METLVGAEGNGEGQFKESRIHKTNSTFSSPNLGADPVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKlesseglsnsenaeaDAGKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQCSDQHDTLRGIDEKLQSEIPlqesdlssqslskslnnqpsIHGECSNSSNGLVEGQRSTSAVYTSSKPEFSRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKLVSKGGEGSCNKEAIEDQAVKPVDGSGKESSLNPGSKMEDQQIVSSERLRTCSKDYSCADEDPLKEQRNAKRIRKPTRRYIEELSEVESKEHGGKSIASVKNLGLGLMSSRSNTRPVRIASSNRITLRLDSLGGSGVQIpyvsrvrrsrprKNVKALMEFHPNGIGMAAKLVKEAVDVHSSEPNRESGGIVLKASSAPEQIQQQGQNMEPKNKDPSVYTPDDNPATVRAVKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKVWTYIIVLGLAVANNLG
*********************************ADPVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIF*************************************************************TYVLVDG***********************************************************************SRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKL***************************************************************************************************************************ITLRLDSLGGSGVQIPYVSR***********ALMEFHPNGIGMAAKLV*********************************************************VKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKVWTYIIVLGLAVA****
**TL*G******************************VVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKLESSEGLSNSENAEADAGKLNTHLESIEEMLTKAKQ*******CGSPDHSSTYVLVDG***************LQ*EIPL***************************************************LMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKLV**********************************************************************IRKPTRRYI*****************************************************************************************************************************************************************TLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKVWTYIIVLGLA******
*************QFKESRIHKTNSTFSSPNLGADPVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERS*******************EADAGKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQCSDQHDTLRGIDEKLQSEIP********************************************SSKPEFSRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKLVSKGGEGSCNKEAIEDQAVKP*************************RLRTCSKDYSCADEDPLKEQRNAKRIRKPTRRYIEEL**********KSIASVKNLGLGLMSSRSNTRPVRIASSNRITLRLDSLGGSGVQIPYVSRVRRSRPRKNVKALMEFHPNGIGMAAKLVKEA***********SGGIVLKASSAP******************VYTPDDNPATVRAV********HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKVWTYIIVLGLAVANNLG
*ETLVGAEGNGEGQFKESRIHKTNSTFSSPNLGADPVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKLESSEGLSNSENAEADAGKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQCSDQHDTLRGIDEKLQSEIPLQES*******************************************PEFSRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKLVSKGG*****************************************************DEDPLKEQRNAKRIRKPTRRYIEELS******************************PVR*ASSNRITLRLDSLGGSGVQIPYVSRVRRSRPRKNVKALMEFHPNGIGMAAKLVK***D*************************************************************HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKVWTYIIVLGLAVA****
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METLVGAEGNGEGQFKESRIHKTNSTFSSPNLGADPVVYKLVRVDGDGKLVPATDDELMEVGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKLESSEGLSNSENAEADxxxxxxxxxxxxxxxxxxxxxESHLLACGSPDHSSTYVLVDGQCSDQHDTLRGIDEKLQSEIPLQESDLSSQSLSKSLNNQPSIHGECSNSSNGLVEGQRSTSAVYTSSKPEFSRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKLVSKGGEGSCNKEAIEDQAVKPVDGSGKESSLNPGSKMEDQQIVSSERLRTCSKDYSCADEDPLKEQRNAKRIRKPTRRYIEELSEVESKEHGGKSIASVKNLGLGLMSSRSNTRPVRIASSNRITLRLDSLGGSGVQIPYVSRVRRSRPRKNVKALMEFHPNGIGMAAKLVKEAVDVHSSEPNRESGGIVLKASSAPEQIQQQGQNMEPKNKDPSVYTPDDNPATVRAVKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKVWTYIIVLGLAVANNLG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query586 2.2.26 [Sep-21-2011]
Q9M347400 Telomere repeat-binding p no no 0.083 0.122 0.469 4e-05
Q9LL45633 Telomere-binding protein no no 0.092 0.085 0.418 0.0001
Q6R0E3630 Telomere repeat-binding p no no 0.093 0.087 0.375 0.0004
Q9SNB9553 Telomere repeat-binding p no no 0.095 0.101 0.385 0.0004
Q9FFY9640 Telomere repeat-binding p no no 0.092 0.084 0.381 0.0004
Q9C7B1619 Telomere repeat-binding p no no 0.092 0.087 0.381 0.0005
>sp|Q9M347|TRP6_ARATH Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6 PE=1 SV=1 Back     alignment and function desciption
 Score = 50.4 bits (119), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 33/49 (67%)

Query: 521 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK 569
           V+R+  R +T+SEV  LV+ V + G GRW ++K  AF   ++RT VDLK
Sbjct: 310 VQRRIRRPFTVSEVEALVQAVERLGTGRWRDVKSHAFNHVNHRTYVDLK 358
Binds specifically to the plant telomeric double-stranded DNA sequences. At least 4 repeats of telomeric sequences are required for binding.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1 PE=1 SV=2 Back     alignment and function description
>sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5 PE=1 SV=2 Back     alignment and function description
>sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4 PE=1 SV=1 Back     alignment and function description
>sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
225442160667 PREDICTED: uncharacterized protein LOC10 0.993 0.872 0.559 1e-172
297743022686 unnamed protein product [Vitis vinifera] 0.993 0.848 0.542 1e-168
224054116661 predicted protein [Populus trichocarpa] 0.982 0.871 0.572 1e-162
224070821 704 predicted protein [Populus trichocarpa] 0.989 0.823 0.538 1e-161
255560653623 conserved hypothetical protein [Ricinus 0.923 0.868 0.561 1e-157
357513927599 Myb family transcription factor [Medicag 0.948 0.928 0.488 1e-138
357513925662 Myb family transcription factor [Medicag 0.965 0.854 0.481 1e-138
356558735646 PREDICTED: uncharacterized protein LOC10 0.960 0.871 0.509 1e-137
358248240648 uncharacterized protein LOC100775511 [Gl 0.957 0.865 0.510 1e-136
357513929663 Myb family transcription factor [Medicag 0.967 0.855 0.479 1e-136
>gi|225442160|ref|XP_002274215.1| PREDICTED: uncharacterized protein LOC100263481 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 340/608 (55%), Positives = 411/608 (67%), Gaps = 26/608 (4%)

Query: 1   METLVGAEGNGEGQFKESRIHKTNSTFSSPNLGADPVVYKLVRVDGDGKLVPATDDELME 60
           MET+VG EGN E +F++  + K+    +     ADPVVYKLVRVDGDG+LVPATDDE+ME
Sbjct: 1   METVVGVEGNDEAKFEDCVVEKSGPEPTQSKQIADPVVYKLVRVDGDGRLVPATDDEVME 60

Query: 61  VGNLLADDKIEMHLVADAGPTGRCIFNERSSSGMPKLESSEGLSNSENAEADAGKLNTHL 120
           V +LL + KIEM  VAD G T  C   E   SG P LE SEG+  S N E DA KL+  L
Sbjct: 61  VEDLLEEFKIEMPFVADTGQTVECTSKEEFPSGNPHLECSEGMLQSVNTEIDAEKLSARL 120

Query: 121 ESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQCSDQHDTLRGIDEKLQSEIPLQESD 180
           E I EML K  QEE   LA GSPDHSS Y+ VD Q SD+HD L  ID+KLQS+IPLQE  
Sbjct: 121 EYIGEMLQKVNQEERLRLAYGSPDHSSAYMNVDSQYSDEHDKLPAIDKKLQSKIPLQEIV 180

Query: 181 LSSQSLSKSLN-NQPSIHGECSNSSNGLVEGQRSTSAVYTSSKPEFSRLMGEICLDNLSI 239
            SS   S   + +Q    GECSN   G ++   S SAV TS KP+F++L GEICLDNLSI
Sbjct: 181 PSSVLSSNDTHIDQSGSVGECSNPPGGPMDSGSSASAVCTSLKPDFTKLKGEICLDNLSI 240

Query: 240 KELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCDVSTSSFIIKDNKLVSKGGEGSC-- 297
           +ELHETFKATFGRET+VKDKQWLKRRIAMGLTNSCDVST++FI KDNK + K  E  C  
Sbjct: 241 RELHETFKATFGRETSVKDKQWLKRRIAMGLTNSCDVSTTTFIFKDNKSMKKVKEECCKS 300

Query: 298 -NKEAIEDQAVKPVDGSGKESSLNPGSKMEDQQIVSSERLRTCSKDYSCADEDPLKEQRN 356
            +   IED  V   + + ++S  +  ++ E  QI+S +RLR  S +Y C  +D   EQ  
Sbjct: 301 VDGTLIEDTVVGAKNDNCRDSPTSRNNRGEAHQILSGKRLRNSSVEYDCGSDDLHTEQIA 360

Query: 357 AKRIRKPTRRYIEELSEVESKEHGGKSIASVKNLGLGLMSSRSNTRPVRIASS--NRITL 414
            KRIRKPT+RYIEELSE +S+E+GG+  +SVKN   G  S +S  RPVR   S    +  
Sbjct: 361 GKRIRKPTKRYIEELSEADSREYGGRLTSSVKNSVHGQSSPKSQARPVRNVCSEGKTVVT 420

Query: 415 RLDSLGGSGVQIPYVSRVRRSRPRKNVKALMEFHPNGIGMAAKLVKEAVDVHSSEPNRES 474
           RLDSLGGSGVQ+PYV RVRRSRPRKN  ALM+F+ N +GMAAKLVK+A+ V SS  + E 
Sbjct: 421 RLDSLGGSGVQVPYVFRVRRSRPRKNFMALMKFNTNSMGMAAKLVKKALGVRSSRTDNEG 480

Query: 475 GGIVLKASSAPEQIQ-------------------QQGQNMEPKNKDPSVYTPDDNPATVR 515
           G  VL++  AP+++Q                   +  Q +E K+ D S  T DDN ATV 
Sbjct: 481 GNKVLQSRPAPKRLQLPLIGEPVKHEQCSVADTIELEQRVELKHVDSSGDTSDDNIATVP 540

Query: 516 AVKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYI 574
             KGG+RRKHHRAWTLSEVMKLV+GVS+YGAGRWSEIKRLAFASYSYRTSVDLK  W  +
Sbjct: 541 TAKGGMRRKHHRAWTLSEVMKLVDGVSRYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNL 600

Query: 575 IVLGLAVA 582
           +    A++
Sbjct: 601 LRASFALS 608

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297743022|emb|CBI35889.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224054116|ref|XP_002298100.1| predicted protein [Populus trichocarpa] gi|222845358|gb|EEE82905.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224070821|ref|XP_002303250.1| predicted protein [Populus trichocarpa] gi|222840682|gb|EEE78229.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255560653|ref|XP_002521340.1| conserved hypothetical protein [Ricinus communis] gi|223539418|gb|EEF41008.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357513927|ref|XP_003627252.1| Myb family transcription factor [Medicago truncatula] gi|355521274|gb|AET01728.1| Myb family transcription factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|357513925|ref|XP_003627251.1| Myb family transcription factor [Medicago truncatula] gi|355521273|gb|AET01727.1| Myb family transcription factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|356558735|ref|XP_003547658.1| PREDICTED: uncharacterized protein LOC100782501 [Glycine max] Back     alignment and taxonomy information
>gi|358248240|ref|NP_001240101.1| uncharacterized protein LOC100775511 [Glycine max] gi|254808770|gb|ACT82840.1| transcription factor MYB884 [Glycine max] Back     alignment and taxonomy information
>gi|357513929|ref|XP_003627253.1| Myb family transcription factor [Medicago truncatula] gi|355521275|gb|AET01729.1| Myb family transcription factor [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query586
TAIR|locus:2030255630 TRFL6 "TRF-like 6" [Arabidopsi 0.947 0.880 0.359 5.5e-77
TAIR|locus:504955960410 TRFL8 "TRF-like 8" [Arabidopsi 0.116 0.165 0.391 1.1e-05
TAIR|locus:2030255 TRFL6 "TRF-like 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
 Identities = 228/634 (35%), Positives = 328/634 (51%)

Query:     1 METLVGAEGNGEGQFKESRIHKTNSTFSSPNLGADPVVYKLVRVDGDGKLVPATDDELME 60
             M T+VG   +    F E       + FSS N   +PV YKLVRV GDG LVPATD+E++E
Sbjct:     1 MGTVVGTVEDRRDMF-EGNAQTRITPFSSTNQIGNPVAYKLVRVSGDGSLVPATDEEILE 59

Query:    61 V---------------GNLLAD------DKIEMHLVADAGPTGRCIFNERSSSGMPKXXX 99
             V               G L  D      D+ +MH+ +DA  T   +  E   S + +   
Sbjct:    60 VNDTDMHIPSDTCQTIGYLATDEENVEVDETDMHIASDACQTIGYLPAEGIPSRLSQIES 119

Query:   100 XXXXXXXXXXXXDA----GKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLVDGQ 155
                         +      ++ +  E  EEML K +QEE      GS    ST    + Q
Sbjct:   120 SEAINSGLLHSDNVQPYTDQVKSRSEYNEEMLQKVEQEERLENVHGS-QMPSTPADANIQ 178

Query:   156 CSDQHDTLRGIDEKLQSEIPXXXXXXXXXXXXXXXXXXXXIHGECSNSSNGLVEGQRSTS 215
             CS++++     ++++  E                      +   CSN+    V   + T+
Sbjct:   179 CSNENNFFE--EDQVHHE---------ALLQDECKMNESDMMERCSNA----VASPKETA 223

Query:   216 AVYTSSKPEFSRLMGEICLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLTNSCD 275
                 + KP+FSR+ GEICLDNL IK L ETF+ATFGR+TTVKDK WLKRRIAMGL NSCD
Sbjct:   224 LSAAAQKPDFSRVRGEICLDNLPIKALQETFRATFGRDTTVKDKTWLKRRIAMGLINSCD 283

Query:   276 VSTSSFIIKDNKLVSKGGEGSCNKEAIEDQAVKPVDGSGKESSLNPGSKMEDQQIVSSER 335
             V T++  +KDNKL+  G +   N       A++   G    ++     KM+D    S++ 
Sbjct:   284 VPTTNLRVKDNKLI--GNQEKSNDVT---NAIRKEMGDDVRAT-----KMKDAPS-STDH 332

Query:   336 LRTCSK--DYSCADEDPLKEQRNAKRIRKPTRRYIEELSEVESKEHGGKSIASVKNLGLG 393
             +   S   ++  A ED   EQR AKR+RKPTRRYIEELSE + K+   KS+   K+  L 
Sbjct:   333 VNGHSNGGNHYYASEDYSSEQRAAKRVRKPTRRYIEELSETDDKQQNDKSVIPSKDQRL- 391

Query:   394 LMSSRSNTRPVRIASSNRITL-RLDSLGGSGVQIXXXXXXXXXXXXKNVKALMEFHPNGI 452
               S +S  R + ++S  R+T+ R+ SL GS +++            +N+ AL+  H + +
Sbjct:   392 --SEKSEVRSISVSSGKRVTVTRMVSLAGSEIEVPYVSHVRRSRPRENIMALLGCHSSYL 449

Query:   453 GMAAKLVKEAVDVHSSEPNRE--SGGIVLKASSAPEQ--------------IQQQGQNME 496
                A   +  +++  S+ + E  +   V K++S P Q              + +  Q ME
Sbjct:   450 EDKASAAESNLNLSPSQLSSEVVNRDSVEKSASRPVQNEFATSDENNVEHILSEVDQEME 509

Query:   497 PKNKDPSVYTPDDNPATVRAVKGG-VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRL 555
             P++ D S  + D+N   V  ++GG +RRKHHRAWTLSE+ KLVEGVSKYGAG+WSEIK+ 
Sbjct:   510 PEHIDSSGNSSDENNIGVPIMQGGALRRKHHRAWTLSEIAKLVEGVSKYGAGKWSEIKKH 569

Query:   556 AFASYSYRTSVDLK-VWTYIIVLGLAVA--NNLG 586
              F+S+SYRTSVDLK  W  ++    A +  N++G
Sbjct:   570 LFSSHSYRTSVDLKDKWRNLLKTSFAQSPSNSVG 603
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0009651 "response to salt stress" evidence=IEP
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:504955960 TRFL8 "TRF-like 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
cd1166050 cd11660, SANT_TRF, Telomere repeat binding factor- 1e-12
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 5e-05
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 2e-04
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 0.004
>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family Back     alignment and domain information 
 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK 569
           R WT  E   LVEGV KYG G W++I +  +   + RTSVDLK
Sbjct: 1   RKWTDEEDEALVEGVEKYGVGNWAKILK-DYFFVNNRTSVDLK 42

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 586
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 98.7
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 98.39
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.27
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 97.84
PLN03212 249 Transcription repressor MYB5; Provisional 97.58
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.45
PLN03091 459 hypothetical protein; Provisional 97.21
PLN03212 249 Transcription repressor MYB5; Provisional 97.2
PLN03091 459 hypothetical protein; Provisional 96.96
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 95.86
KOG0048 238 consensus Transcription factor, Myb superfamily [T 95.83
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 95.61
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 95.31
KOG0048 238 consensus Transcription factor, Myb superfamily [T 94.08
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 92.3
KOG0049 939 consensus Transcription factor, Myb superfamily [T 92.04
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 91.89
KOG0049 939 consensus Transcription factor, Myb superfamily [T 87.69
PLN031421033 Probable chromatin-remodeling complex ATPase chain 87.5
KOG0051 607 consensus RNA polymerase I termination factor, Myb 87.39
KOG4282 345 consensus Transcription factor GT-2 and related pr 82.36
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 80.95
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information 
Probab=98.70  E-value=1.3e-08  Score=77.41  Aligned_cols=47  Identities=30%  Similarity=0.521  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhh
Q 007868          526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYII  575 (586)
Q Consensus       526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~  575 (586)
                      |.+||.+|.+.|+++|++||.++|+.|.....   .+||..+++ +|+++.
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence            46899999999999999999999999998843   599999999 999974

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
2aje_A105 Solution Structure Of The Arabidopsis Thaliana Telo 5e-05
2roh_A122 The Dna Binding Domain Of Rtbp1 Length = 122 5e-05
2qhb_A86 Crystal Structure Of Ngtrf Complexed With Telomeric 9e-05
2juh_A121 Solution Structure Of Dna Binding Domain Of Ngtrf1 2e-04
2ckx_A83 Crystal Structure Of Ngtrf1, Double-Stranded Telome 3e-04
>pdb|2AJE|A Chain A, Solution Structure Of The Arabidopsis Thaliana Telomeric Repeat-Binding Protein Dna Binding Domain Length = 105 Back     alignment and structure 
Iteration: 1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 522 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK 569
           +R+  R ++++EV  LV+ V K G GRW ++K  AF    +RT VDLK
Sbjct: 9   QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLK 56
>pdb|2ROH|A Chain A, The Dna Binding Domain Of Rtbp1 Length = 122 Back     alignment and structure
>pdb|2QHB|A Chain A, Crystal Structure Of Ngtrf Complexed With Telomeric Dna Length = 86 Back     alignment and structure
>pdb|2JUH|A Chain A, Solution Structure Of Dna Binding Domain Of Ngtrf1 Length = 121 Back     alignment and structure
>pdb|2CKX|A Chain A, Crystal Structure Of Ngtrf1, Double-Stranded Telomeric Repeat Binding Factor From Nicotiana Tabacum Length = 83 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query586
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 1e-17
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 2e-16
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 5e-16
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 1e-15
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 1e-11
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 7e-11
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 4e-10
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 9e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 1e-04
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
 Score = 78.3 bits (192), Expect = 1e-17
 Identities = 25/69 (36%), Positives = 37/69 (53%)

Query: 501 DPSVYTPDDNPATVRAVKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASY 560
           DP+     + P +        +R+  R +T++EV  LVE V   G GRW ++K  AF + 
Sbjct: 6   DPNSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENV 65

Query: 561 SYRTSVDLK 569
            +RT VDLK
Sbjct: 66  HHRTYVDLK 74
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.7
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.65
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.64
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.63
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.59
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.38
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.18
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.18
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 98.72
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 98.71
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 98.59
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 98.54
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 98.5
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 98.47
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 98.41
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 98.31
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 98.22
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.09
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 98.08
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 98.04
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.03
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 98.03
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 98.01
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 98.0
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 97.97
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 97.96
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 97.95
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 97.89
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 97.85
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 97.77
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 96.92
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 97.66
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 97.58
2cjj_A93 Radialis; plant development, DNA-binding protein, 97.31
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 97.23
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 97.0
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 96.87
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 96.78
1ign_A 246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 96.67
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 96.35
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 96.11
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 95.75
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 95.7
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 95.68
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 95.59
2crg_A70 Metastasis associated protein MTA3; transcription 94.51
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 94.43
4b4c_A 211 Chromodomain-helicase-DNA-binding protein 1; chrom 93.97
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 93.91
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 92.18
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 91.24
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 85.44
2xb0_X 270 Chromo domain-containing protein 1; hydrolase, DNA 84.17
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 84.07
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
Probab=99.70  E-value=1.5e-17  Score=149.55  Aligned_cols=74  Identities=34%  Similarity=0.493  Sum_probs=62.4

Q ss_pred             CCCCCceeecccCC----CCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhhhc
Q 007868          507 PDDNPATVRAVKGG----VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLGLA  580 (586)
Q Consensus       507 sdd~~~t~p~~K~g----~rRK~rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s~~  580 (586)
                      +.+..+.+|.+|.+    .+||++++||.||+++|++||++||.|+|+.|++.+|+.|.+||.|||| |||||+|.+.+
T Consensus         8 ~~~~~~~~p~~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~   86 (122)
T 2roh_A            8 NSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASI   86 (122)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred             CcccccccCcccCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC
Confidence            33444556654433    4688899999999999999999999999999999988889999999999 99999987654
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 586
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 1e-07
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 1e-04
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 527 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK 569
           R ++++EV  LVE V   G GRW ++K  AF +  +RT VDLK
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLK 43
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query586
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.46
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.45
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.44
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.73
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.62
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.47
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 98.34
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 98.31
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.27
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 98.16
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 98.01
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 97.81
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 97.79
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 97.53
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 97.09
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 96.12
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 95.82
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 91.68
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 91.0
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2e-14  Score=110.48  Aligned_cols=51  Identities=35%  Similarity=0.666  Sum_probs=47.0

Q ss_pred             CCCCCHHHHHHHHHHHhhcCCCChHHHHhhhccCCCCCCcccch-hhhhhhhhh
Q 007868          526 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLK-VWTYIIVLG  578 (586)
Q Consensus       526 rr~WT~eEveaLveGV~kyGvG~Wk~Il~~~~~~f~~RT~VDLK-KWRNL~K~s  578 (586)
                      +++||.+|.++|++||++||.|+|+.|...++  |.+||++||+ |||||.|.+
T Consensus         2 r~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~--~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           2 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHHHhhcC--CCCcCHHHHHHHHHHHhcCC
Confidence            56899999999999999999999999998864  6799999999 999999865
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure