Citrus Sinensis ID: 007871
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 586 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LS72 | 600 | Pentatricopeptide repeat- | yes | no | 0.943 | 0.921 | 0.403 | 1e-125 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.947 | 0.752 | 0.365 | 1e-114 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.962 | 0.828 | 0.365 | 1e-113 | |
| Q1PEU4 | 555 | Pentatricopeptide repeat- | no | no | 0.883 | 0.933 | 0.377 | 1e-112 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.981 | 0.775 | 0.369 | 1e-109 | |
| Q9LTV8 | 694 | Pentatricopeptide repeat- | no | no | 0.948 | 0.801 | 0.355 | 1e-107 | |
| Q9LSB8 | 687 | Putative pentatricopeptid | no | no | 0.970 | 0.828 | 0.335 | 1e-106 | |
| O22137 | 613 | Pentatricopeptide repeat- | no | no | 0.936 | 0.895 | 0.364 | 1e-105 | |
| Q9LXF2 | 548 | Pentatricopeptide repeat- | no | no | 0.858 | 0.917 | 0.368 | 1e-104 | |
| Q9MA95 | 565 | Putative pentatricopeptid | no | no | 0.916 | 0.950 | 0.375 | 1e-102 |
| >sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 447 bits (1151), Expect = e-125, Method: Compositional matrix adjust.
Identities = 226/560 (40%), Positives = 356/560 (63%), Gaps = 7/560 (1%)
Query: 26 THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
+ Q+ AQ+ +L + +L+ +L+ N+ A R+FNQ+ +PN ++ N++IR
Sbjct: 33 NQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNL--AVRVFNQVQEPNVHLCNSLIR 90
Query: 86 GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
+ Q+S P +A + M+R GL DN+TYPF+LKAC L +H + K+G
Sbjct: 91 AHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSS 150
Query: 146 DVFVVNGLIGMYSKCGHMGC--ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
D++V N LI YS+CG +G A +FE +D VSWN +L G V+ GE+ AR +FDE
Sbjct: 151 DIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDE 210
Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
MPQ+D ISW+ M+DGY + + ++S A LFE MP ++ +SW++M+ GY+K GD+ A+ +
Sbjct: 211 MPQRDLISWNTMLDGYARCR-EMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVM 269
Query: 264 FNEMP--ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321
F++MP +NV +W+I+I GYA+ G KEA L +M+ G++ D +V+ ++AC + G
Sbjct: 270 FDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESG 329
Query: 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIA 381
L LG IH +KRS + + V AL+DMY KCG+L +A +F + KK+++S+N M+
Sbjct: 330 LLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLH 389
Query: 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441
GLG++G G+EA++ F++M EGI D + F+ VL +C+H+GL EG F SM++ +
Sbjct: 390 GLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLV 449
Query: 442 PKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501
P++EHY CLVDLL R G L++A+ +V++MPM+PN+ +WG LL ACR H V +A+ V++
Sbjct: 450 PQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDN 509
Query: 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVS 561
LV+L D G Y LLSNIYA A WE IR M+ ++K +G S +E++ I EF
Sbjct: 510 LVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTV 569
Query: 562 GEIFDVQSEELELVIQSFVK 581
+ +S+++ ++ S ++
Sbjct: 570 FDKSHPKSDQIYQMLGSLIE 589
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/604 (36%), Positives = 349/604 (57%), Gaps = 49/604 (8%)
Query: 10 SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLF 69
SL VSL Q+ +T H+++ ++P++ S+L + +++ A ++F
Sbjct: 35 SLIERCVSLRQLKQTHGHMIR-------TGTFSDPYSASKLFAMAALSSFASLEYARKVF 87
Query: 70 NQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN-YTYPFVLKACGVLMGL 128
++I +PN++ NT+IR Y +P ++ +++M + N YT+PF++KA + L
Sbjct: 88 DEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSL 147
Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
G +HG VK DVFV N LI Y CG + A VF + KD+VSWN ++ GF
Sbjct: 148 SLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGF 207
Query: 189 VECGEMGKAREVFDEMPQKDAISWSI---------------------------------- 214
V+ G KA E+F +M +D + +
Sbjct: 208 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNL 267
Query: 215 -----MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269
M+D Y K G I A+ LF+ M KD ++W +M+DGYA D AA+++ N MP+
Sbjct: 268 TLANAMLDMY-TKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326
Query: 270 RNVFSWSIMIDGYAQHGNPKEALYLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKW 328
+++ +W+ +I Y Q+G P EAL +F E+ L + ++ + I+++ +SACAQVGAL+LG+W
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386
Query: 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388
IH ++K+ I M+ V +ALI MY KCG L+++R +F S+ K++V ++ MI GL M+G
Sbjct: 387 IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGC 446
Query: 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS 448
G EA+ F +M+ + + + F V ACSH+GL E +F M+ + GI P+ +HY+
Sbjct: 447 GNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYA 506
Query: 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508
C+VD+L R+G LE+A+ +E+MP+ P+ ++WG LL AC+ H N+ LAE+ L+EL+
Sbjct: 507 CIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPR 566
Query: 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQ 568
+ G +VLLSNIYA G WE+ +RK MR +KKE G S IEIDG I EF+SG+
Sbjct: 567 NDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPM 626
Query: 569 SEEL 572
SE++
Sbjct: 627 SEKV 630
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/605 (36%), Positives = 345/605 (57%), Gaps = 41/605 (6%)
Query: 9 FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERL 68
F L NPL+SLL+ K H+ QI AQ+ N LI +PF S+L+ + +D + ++
Sbjct: 50 FVLHNPLLSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKI 109
Query: 69 FNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL---VDNYTYPFVLKACGVL 125
I PN + N IRG+++S NP+++ Y M R G D++TYP + K C L
Sbjct: 110 LKGIENPNIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADL 169
Query: 126 MGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL 185
G I G V+K+ V N I M++ CG M AR VF+ S ++DLVSWN ++
Sbjct: 170 RLSSLGHMILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLI 229
Query: 186 RGFVECGEMGKAREVFDEMPQK----DAI-------SWSIMIDGYRKKK----------- 223
G+ + GE KA V+ M + D + S S++ D R K+
Sbjct: 230 NGYKKIGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLR 289
Query: 224 ----------------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267
GDI AR +F+++ + ++SW +MI GYA+ G L +++LF++M
Sbjct: 290 MTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDM 349
Query: 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK 327
E++V W+ MI G Q ++AL LF+EM +PD I+++ +SAC+Q+GALD+G
Sbjct: 350 EEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGI 409
Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG 387
WIH ++++ +++++ + T+L+DMY KCG++ EA +F+ + +N ++Y +I GL ++G
Sbjct: 410 WIHRYIEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHG 469
Query: 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY 447
A+ F +M GI D++ F+G+L AC H G+ G F MK + P+L+HY
Sbjct: 470 DASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHY 529
Query: 448 SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507
S +VDLL RAG LE+A ++ESMPM+ + A+WG LL CR H NV L E + L+EL
Sbjct: 530 SIMVDLLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDP 589
Query: 508 DDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDV 567
D G+YVLL +Y +A MWE A R R+MM +R ++K G S IE++G + EF+ +
Sbjct: 590 SDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRP 649
Query: 568 QSEEL 572
+SE++
Sbjct: 650 ESEKI 654
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q1PEU4|PP201_ARATH Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 198/525 (37%), Positives = 328/525 (62%), Gaps = 7/525 (1%)
Query: 56 SPNTLNMDQAERLFNQIYQ-PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNY 113
S + + + A +LF+Q Q ++++ N+MI+ Y ++ + + Y +++++ DN+
Sbjct: 20 SASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNF 79
Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
T+ + K+C + M + +G ++H ++ + GF D++V G++ MY+K G MGCAR+ F+
Sbjct: 80 TFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEM 139
Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ-KDAISWSIMIDGYRKKKGDISSARIL 232
+ VSW ++ G++ CGE+ A ++FD+MP KD + ++ M+DG+ K GD++SAR L
Sbjct: 140 PHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGF-VKSGDMTSARRL 198
Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
F+ M K +I+W +MI GY I D+ AA++LF+ MPERN+ SW+ MI GY Q+ P+E +
Sbjct: 199 FDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGI 258
Query: 293 YLFREM-LCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
LF+EM + PD ++++ + A + GAL LG+W H F++R ++ + V TA++DM
Sbjct: 259 RLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDM 318
Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
Y KCG +++A+RIF M +K V S+N MI G +NG AL F M E P D++
Sbjct: 319 YSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEEKP-DEITM 377
Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
L V+ AC+H GL EG + F M R G+ K+EHY C+VDLL RAG L++A +++ +MP
Sbjct: 378 LAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMP 436
Query: 472 MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531
+PN + + L AC ++++ AE +++ VEL+ + G YVLL N+YA W+
Sbjct: 437 FEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGM 496
Query: 532 IRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
++ +MRK + KKE G S+IEI+ + EF+SG+ + LV+
Sbjct: 497 VKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVL 541
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust.
Identities = 232/628 (36%), Positives = 359/628 (57%), Gaps = 53/628 (8%)
Query: 10 SLKN-PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAER 67
S++N P +SLL KT + I AQ+ L + LS+L+ + SP+ + A
Sbjct: 30 SIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAIS 89
Query: 68 LFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
+F I +PN + NTM RG+ SS+P AL YV M GLL ++YT+PFVLK+C
Sbjct: 90 VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKA 149
Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
EG +IHG V+K+G D++V LI MY + G + A VF+ S +D+VS+ +++G
Sbjct: 150 FKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKG 209
Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE------------- 234
+ G + A+++FDE+P KD +SW+ MI GY + G+ A LF+
Sbjct: 210 YASRGYIENAQKLFDEIPVKDVVSWNAMISGY-AETGNYKEALELFKDMMKTNVRPDEST 268
Query: 235 --------------------HMPIKD------LISWNSMIDGYAKIGDLVAAQQLFNEMP 268
H+ I D L N++ID Y+K G+L A LF +P
Sbjct: 269 MVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLP 328
Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328
++V SW+ +I GY KEAL LF+EML G P+ ++++ + ACA +GA+D+G+W
Sbjct: 329 YKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRW 388
Query: 329 IHVFM-KRSR-ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386
IHV++ KR + +T ++T+LIDMY KCG ++ A ++F S+ K++ S+N MI G M+
Sbjct: 389 IHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMH 448
Query: 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446
G + + F++M GI DD+ F+G+L ACSHSG+ G IF++M + + PKLEH
Sbjct: 449 GRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEH 508
Query: 447 YSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506
Y C++DLL +G ++A ++ M M+P+ +W +LL AC+ H NV L E E L++++
Sbjct: 509 YGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIE 568
Query: 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFD 566
++ G YVLLSNIYA AG W + R ++ + +KK G S IEID + EF+ G+ F
Sbjct: 569 PENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFH 628
Query: 567 VQS-------EELELVIQS--FVKTTIE 585
++ EE+E++++ FV T E
Sbjct: 629 PRNREIYGMLEEMEVLLEKAGFVPDTSE 656
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 388 bits (997), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/574 (35%), Positives = 342/574 (59%), Gaps = 18/574 (3%)
Query: 16 VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQP 75
SL+ + + QI A+L L F +++L+ + +S + A ++F+ + +P
Sbjct: 25 ASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITF--ARQVFDDLPRP 82
Query: 76 NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
+ N +IRGY+++++ Q AL Y NM+ + D++T+P +LKAC L L G +H
Sbjct: 83 QIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVH 142
Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGFVECGE 193
+V ++GF DVFV NGLI +Y+KC +G AR+VFEG + + +VSW ++ + + GE
Sbjct: 143 AQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGE 202
Query: 194 MGKAREVFDEMPQKDA-ISWSIMIDGYRK-------KKGDISSARILFEHMPIKD--LIS 243
+A E+F +M + D W ++ K+G A ++ + I+ LIS
Sbjct: 203 PMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS 262
Query: 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
N+M YAK G + A+ LF++M N+ W+ MI GYA++G +EA+ +F EM+ + V
Sbjct: 263 LNTM---YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDV 319
Query: 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363
RPD IS+ AISACAQVG+L+ + ++ ++ RS D+ + +ALIDM+ KCGS++ AR
Sbjct: 320 RPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARL 379
Query: 364 IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423
+F ++V+ ++ MI G G++G EA+ + ME G+ +D+ FLG+L+AC+HSG+
Sbjct: 380 VFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGM 439
Query: 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
EG+ F M H I P+ +HY+C++DLL RAG L+QA +++ MP++P + +WG LL
Sbjct: 440 VREGWWFFNRMADH-KINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALL 498
Query: 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543
AC+ H++V L E + L + + G YV LSN+YA A +W+ +R M+++ + K
Sbjct: 499 SACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNK 558
Query: 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQ 577
+ G S +E+ G ++ F G+ + EE+E ++
Sbjct: 559 DVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVE 592
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 385 bits (988), Expect = e-106, Method: Compositional matrix adjust.
Identities = 204/608 (33%), Positives = 344/608 (56%), Gaps = 39/608 (6%)
Query: 15 LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
+S+L + KTT Q+ +Q T + P +L + S ++ A +LF +I +
Sbjct: 37 FISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPE 96
Query: 75 PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG-LVEGTE 133
P+ + N MI+G+++ + + Y+NM ++G+ D++T+PF+L G L G +
Sbjct: 97 PDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKK 156
Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
+H VVK G +++V N L+ MYS CG M AR VF+ +D+ SWNL++ G+ E
Sbjct: 157 LHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKE 216
Query: 194 MGKAREVFDEMPQK----DAISWSIMIDGYRKKK-------------------------- 223
++ E+ EM + +++ +++ K K
Sbjct: 217 YEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENA 276
Query: 224 --------GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW 275
G++ A +F M +D+ISW S++ GY + G+L A+ F++MP R+ SW
Sbjct: 277 LVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISW 336
Query: 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335
+IMIDGY + G E+L +FREM G+ PD +++ ++ACA +G+L++G+WI ++ +
Sbjct: 337 TIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDK 396
Query: 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395
++I D++V ALIDMY KCG ++A+++F+ M +++ ++ M+ GL NG G+EA+K
Sbjct: 397 NKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKV 456
Query: 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455
F QM+ I DD+ +LGVL AC+HSG+ + + F M+ IEP L HY C+VD+L
Sbjct: 457 FFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLG 516
Query: 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515
RAG +++A I+ MPM PN +WG LL A R H + +AE+ + ++EL+ D+ +Y L
Sbjct: 517 RAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGAVYAL 576
Query: 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELV 575
L NIYA W+ +R+ + IKK G S+IE++G EFV+G+ +QSEE+ +
Sbjct: 577 LCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEEIYMK 636
Query: 576 IQSFVKTT 583
++ + +
Sbjct: 637 LEELAQES 644
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350, chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 382 bits (980), Expect = e-105, Method: Compositional matrix adjust.
Identities = 216/592 (36%), Positives = 328/592 (55%), Gaps = 43/592 (7%)
Query: 16 VSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNM-DQAERLFNQIYQ 74
+ +L KT+ + QI +L +I ++++++ S + D A +F++ +
Sbjct: 16 IHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHV 75
Query: 75 --------PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLM 126
+ ++ N +I+ ++ +P++AL M G+ VD ++ VLKAC L
Sbjct: 76 CSFSFGEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLG 135
Query: 127 GLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLR 186
+ G +IHG + K G D+F+ N LIG+Y KCG +G +R +F+ +D VS+N ++
Sbjct: 136 FVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMID 195
Query: 187 GFVECGEMGKAREVFDEMPQ--KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
G+V+CG + ARE+FD MP K+ ISW+ MI GY + + A LF MP KDLISW
Sbjct: 196 GYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADMPEKDLISW 255
Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV- 303
NSMIDGY K G + A+ LF+ MP R+V +W+ MIDGYA+ G A LF +M + V
Sbjct: 256 NSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVV 315
Query: 304 -------------------------------RPDVISVMGAISACAQVGALDLGKWIHVF 332
PD +++ + A AQ+G L +H++
Sbjct: 316 AYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLY 375
Query: 333 MKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
+ + + + ALIDMY KCGS+ A +F + K++ +N MI GL ++G GE A
Sbjct: 376 IVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESA 435
Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
Q+E + DD+ F+GVL ACSHSGL EG F+ M+R IEP+L+HY C+VD
Sbjct: 436 FDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVD 495
Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512
+LSR+G +E A N++E MP++PN +W T L AC +H+ E+V + L+ +
Sbjct: 496 ILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGYNPSS 555
Query: 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEI 564
YVLLSN+YA GMW+ R+R MM++RKI+K G S IE+DG + EF I
Sbjct: 556 YVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFVDSI 607
|
Plays a major role in chloroplast RNA editing. Acts as a site-recognition transacting factor to recruit C-deaminase. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 201/545 (36%), Positives = 315/545 (57%), Gaps = 42/545 (7%)
Query: 18 LLQISKTTTHILQILAQLTTNDLITEPFTLSQLL--MSLTSPNTLNMDQAERLFNQIYQP 75
L Q K + QI A + N L++ + +L+ SL+ P L A +LF++I +P
Sbjct: 18 LWQNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKY--AHKLFDEIPKP 75
Query: 76 NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135
+ + N ++RG QS P+K +S Y M+++G+ D YT+ FVLKAC L G H
Sbjct: 76 DVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFH 135
Query: 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMG 195
G+VV+ GF+ + +V N LI ++ CG ++G
Sbjct: 136 GKVVRHGFVLNEYVKNALILFHANCG-------------------------------DLG 164
Query: 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIG 255
A E+FD+ + ++WS M GY K+G I A LF+ MP KD ++WN MI G K
Sbjct: 165 IASELFDDSAKAHKVAWSSMTSGY-AKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCK 223
Query: 256 DLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315
++ +A++LF+ E++V +W+ MI GY G PKEAL +F+EM G PDV++++ +S
Sbjct: 224 EMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLS 283
Query: 316 ACAQVGALDLGKWIHVFMKR-----SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK 370
ACA +G L+ GK +H+++ S I + + ALIDMY KCGS+D A +F +
Sbjct: 284 ACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFRGVKD 343
Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRI 430
+++ ++N +I GL ++ E +++ F +M+ + +++ F+GV++ACSHSG EG +
Sbjct: 344 RDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKY 402
Query: 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490
F M+ IEP ++HY C+VD+L RAG+LE+A VESM ++PN +W TLL AC+ +
Sbjct: 403 FSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYG 462
Query: 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550
NV L + E L+ ++ D+ G YVLLSNIYA G W+ ++RKM ++KK TG S+I
Sbjct: 463 NVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLI 522
Query: 551 EIDGN 555
E D +
Sbjct: 523 EEDDD 527
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240 OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 209/556 (37%), Positives = 318/556 (57%), Gaps = 19/556 (3%)
Query: 14 PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLL-MSLTSPNTLNMDQAERLFNQI 72
P++S L+ ++ + Q+ + + +I LS+L+ T P T+N+ A +F I
Sbjct: 8 PILSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESI 67
Query: 73 YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGT 132
P+ Y+ N+MIRGY+ S NP KAL FY M RKG D +T+P+VLKAC L + G+
Sbjct: 68 DCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGS 127
Query: 133 EIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECG 192
+HG VVK GF +++V L+ MY CG + VFE ++V+W ++ GFV
Sbjct: 128 CVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNN 187
Query: 193 EMGKAREVFDEMPQKDAI--SWSIMIDGYRK--KKGDISSARIL------------FEHM 236
A E F EM Q + + + +IM+D + DI + + F+
Sbjct: 188 RFSDAIEAFREM-QSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSK 246
Query: 237 PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
++I S+ID YAK GDL A+ LF+ MPER + SW+ +I GY+Q+G+ +EAL +F
Sbjct: 247 VGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFL 306
Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
+ML G+ PD ++ + I A G LG+ IH ++ ++ D + AL++MY K G
Sbjct: 307 DMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTG 366
Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVL 415
+ A++ F + KK+ I++ V+I GL +G G EAL F +M+ +G D + +LGVL
Sbjct: 367 DAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVL 426
Query: 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN 475
ACSH GL EG R F M+ G+EP +EHY C+VD+LSRAG E+A +V++MP+KPN
Sbjct: 427 YACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPN 486
Query: 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535
+ +WG LL C H+N+ L + + + E + G+YVLLSNIYA AG W IR+
Sbjct: 487 VNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRES 546
Query: 536 MRKRKIKKETGRSVIE 551
M+ +++ K G S +E
Sbjct: 547 MKSKRVDKVLGHSSVE 562
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 586 | ||||||
| 359485688 | 585 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.989 | 0.643 | 0.0 | |
| 147807930 | 585 | hypothetical protein VITISV_032407 [Viti | 0.988 | 0.989 | 0.637 | 0.0 | |
| 212723118 | 590 | hypothetical protein [Zea mays] gi|19469 | 0.953 | 0.947 | 0.493 | 1e-155 | |
| 242059659 | 590 | hypothetical protein SORBIDRAFT_03g04363 | 0.965 | 0.959 | 0.477 | 1e-149 | |
| 115441803 | 589 | Os01g0914600 [Oryza sativa Japonica Grou | 0.955 | 0.950 | 0.478 | 1e-148 | |
| 218189594 | 589 | hypothetical protein OsI_04901 [Oryza sa | 0.955 | 0.950 | 0.478 | 1e-148 | |
| 125573086 | 616 | hypothetical protein OsJ_04525 [Oryza sa | 0.931 | 0.886 | 0.484 | 1e-147 | |
| 357126462 | 582 | PREDICTED: pentatricopeptide repeat-cont | 0.952 | 0.958 | 0.462 | 1e-145 | |
| 215741011 | 483 | unnamed protein product [Oryza sativa Ja | 0.807 | 0.979 | 0.525 | 1e-141 | |
| 255584337 | 604 | pentatricopeptide repeat-containing prot | 0.938 | 0.910 | 0.417 | 1e-132 |
| >gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Vitis vinifera] gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/580 (64%), Positives = 473/580 (81%), Gaps = 1/580 (0%)
Query: 5 AAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQ 64
+ K LKNPL+SLLQ SKT++ ILQI AQL T +LI++ F S+LL S+ S TLN++
Sbjct: 4 STPKLQLKNPLLSLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVS-KTLNVNY 62
Query: 65 AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
AE +F QI+QPN+++ NTM++ YT+SS P++AL FY M+RKGLL DNYTYPFVLKACG
Sbjct: 63 AELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGA 122
Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
+ GL+EG + GE VK GF DVFVVNGLI MY +CG G AR+VF+G KDLVSWN +
Sbjct: 123 MCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSM 182
Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
L G+V CGEM A+ +FDEMP++D +SWSIMIDGY KK G+++ AR+ F+ MP +DL+SW
Sbjct: 183 LGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSW 242
Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
NSMIDGYAK+G++ A+++F++M ++NV SWSIMIDGYAQH + KEAL LFR+MLCQG++
Sbjct: 243 NSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIK 302
Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
PD +SV+GA+SAC+Q+GALD G+WIH++MKR+R+ +D++VQTAL+DMY+KCGS DEARRI
Sbjct: 303 PDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRI 362
Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
F SM ++NV+S+NVMI GLGMNGFG+EAL+CF QME E IP DDL+FLGVL+ACSH+ L
Sbjct: 363 FNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLV 422
Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
TEG IF MK +EPKLEHY CLVDLL RAG+L+Q NI++SMPMKPN ALWG+LLL
Sbjct: 423 TEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLL 482
Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
ACR HQNVTLAE+VVE L ELKADD G+YVL+SNIYAD GMWE LRIRK+M++RK+KK+
Sbjct: 483 ACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKD 542
Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTI 584
GRSVIE+DGN++EFVSGE + EE+ELVI S K +
Sbjct: 543 IGRSVIEVDGNVEEFVSGEKSHILREEIELVIWSLAKMAM 582
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/580 (63%), Positives = 471/580 (81%), Gaps = 1/580 (0%)
Query: 5 AAAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQ 64
+ K LKNPL+SLLQ SKT++ ILQI AQL T +LI++ F S+LL S+ S TLN++
Sbjct: 4 STPKLQLKNPLLSLLQXSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVS-KTLNVNY 62
Query: 65 AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
AE +F QI+QPN+++ NTM++ YT+SS P++AL FY M++KGLL DNYTYPFVLKACG
Sbjct: 63 AELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGA 122
Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
+ GL+EG + GE VK GF DVFVVNGLI MY +CG G AR+VF+G KDLVSWN +
Sbjct: 123 MCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSM 182
Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244
L G+V CGEM A+ +FDEMP++D +SWSIMIDGY KK G+++ AR+ F+ MP +DL+SW
Sbjct: 183 LGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSW 242
Query: 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304
NSMIDGYAK+G++ A+++FB+M ++NV SWSIMIDGYA H + KEAL LFR+MLCQG++
Sbjct: 243 NSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIK 302
Query: 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364
PD +SV+GA+SAC+Q+GALD G+WIH++MKR+R+ +D++VQTAL+DMY+KCGS DEAR I
Sbjct: 303 PDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXI 362
Query: 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA 424
F SM ++NV+S+NVMI GLGMNGFG+EAL+CF QME E IP DDL+FLGVL+ACSH+ L
Sbjct: 363 FNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLV 422
Query: 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLL 484
TEG IF MK +EPKLEHY CLVDLL RAG+L+Q NI++SMPMKPN ALWG+LLL
Sbjct: 423 TEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLL 482
Query: 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544
ACR HQNVTLAE+VVE L ELKADD G+YVL+SNIYAD GMWE LRIRK+M++RK+KK+
Sbjct: 483 ACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKD 542
Query: 545 TGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTI 584
GRSVIE+DGN++EFVSGE + EE+ELVI S K +
Sbjct: 543 IGRSVIEVDGNVEEFVSGEKSHILREEIELVIWSLAKMAM 582
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays] gi|194692242|gb|ACF80205.1| unknown [Zea mays] gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 282/571 (49%), Positives = 387/571 (67%), Gaps = 12/571 (2%)
Query: 15 LVSLLQISKTTTHILQILAQL-TTNDLITEPFTLS-QLLMSLTS-PNTLNMDQAERLFNQ 71
L+S L+ ++ +H LQ A L T+ L P LS LL++L S P+ + A+ +F +
Sbjct: 13 LLSRLRACRSASHALQCHALLLTSGHLAASPLRLSNHLLLALASVPSAAAL--ADVVFAR 70
Query: 72 IYQP---NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128
+ P + + NT IR + + P+ AL ++ M+R G+ D YT+P VLKACG G
Sbjct: 71 LPLPAARDPFAWNTAIRLHA-PARPRAALLYFARMRRCGVRPDAYTFPAVLKACGCAPGC 129
Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE--GSEIKDLVSWNLVLR 186
G +H E V+ G D+F VN LI Y + + R VF+ G +DLVSWN ++
Sbjct: 130 RAGLLVHAEAVRRGLAADLFTVNALISFYCRILDIRSGRKVFDEAGGVSRDLVSWNSMVA 189
Query: 187 GFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKG-DISSARILFEHMPIKDLISWN 245
G+V CGEMG A+E+FDEMPQKD SW+ +IDGY K+ G + AR LF+ MP +DL+ WN
Sbjct: 190 GYVGCGEMGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLVCWN 249
Query: 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
SMIDGYA+ G + A+ LF EMPERNV SWSI+IDG+ G KEAL F+ ML G+RP
Sbjct: 250 SMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCGLRP 309
Query: 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365
D I+ +GA+SACAQ+GAL+ G+W+H ++++ ++ D++VQTALIDMY+KCG LD A IF
Sbjct: 310 DRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAMLIF 369
Query: 366 YSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425
SM +++V+++NVMI GLG +GFG +A+ F +ME E + DDL LG+L AC+H+GL +
Sbjct: 370 ESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAGLVS 429
Query: 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
EG IF MK+ GI+PK+EHY LVDLL RAG L+QA + +E+MPM+P LWG+LL A
Sbjct: 430 EGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAA 489
Query: 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545
CR+H V LAE+ VE L +L ADD G+YVLLSNIYAD GMW LRIRK+M ++K+
Sbjct: 490 CRSHSCVELAELSVERLADLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDI 549
Query: 546 GRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
GRSVIE+DG I EFV+G + +E+ L++
Sbjct: 550 GRSVIEVDGEIHEFVNGVGSYICKDEMYLML 580
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor] gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 274/574 (47%), Positives = 381/574 (66%), Gaps = 8/574 (1%)
Query: 15 LVSLLQISKTTTHILQILAQL-TTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIY 73
L+S L+ ++ +H +Q A L T+ L P LS LL+ + A+ +F ++
Sbjct: 13 LLSRLRACRSASHAIQCHALLLTSGHLAASPLRLSNLLLLAIASVPGAAPLADAVFARLP 72
Query: 74 QP---NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130
+P + + NT IR + P+ AL ++ M+ G+ D YT+P VLKACG G
Sbjct: 73 EPAARDPFPWNTAIRLHA-PGRPRAALLYFARMRSCGVRPDAYTFPAVLKACGCAPGCRA 131
Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE--GSEIKDLVSWNLVLRGF 188
G +H E V+ G D+F VN LI Y + R VF+ G +DLVSWN ++ G+
Sbjct: 132 GLLVHAEAVRRGLGADLFTVNALISFYCRILDCISGRKVFDEAGGVSRDLVSWNSMVAGY 191
Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKG-DISSARILFEHMPIKDLISWNSM 247
V CGEMG A+E+FDEMPQ+DA SW +IDGY K+ G + AR LF+ M +DL+ WNSM
Sbjct: 192 VGCGEMGLAQELFDEMPQRDAFSWGALIDGYGKQGGAGVDRARELFDQMTERDLVCWNSM 251
Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
IDGYA+ G + A+ LF EMPERNV SWSI+IDG+ + G KEAL F+ ML G+RPD
Sbjct: 252 IDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHFQSMLRCGIRPDR 311
Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
++ +GA+SACAQ+GAL+ G+W+H ++++ ++ D++VQTALIDMYMKCG +D A IF S
Sbjct: 312 VAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKCGRMDLAMLIFES 371
Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
M +++V+++NVMI GLG +G+G +A+ F +ME E + DDL L +L AC+H+GL +EG
Sbjct: 372 MPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAMLTACTHAGLVSEG 431
Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
IF MK+ GI+PK+EHY LVDLL RAG L+QA + +E+MPM+P LWG+LL ACR
Sbjct: 432 LEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSLLAACR 491
Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
+H V LAE+ VE L L ADD G+YVLLSNIYAD GMW LRIRK+M ++K+ GR
Sbjct: 492 SHSCVELAELSVERLANLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMRKDIGR 551
Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVK 581
SVIE+DG I EFV+G + ++E+ L++ + K
Sbjct: 552 SVIEVDGEIHEFVNGGGSHLCTDEIYLMLWNLSK 585
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group] gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group] gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/569 (47%), Positives = 381/569 (66%), Gaps = 9/569 (1%)
Query: 15 LVSLLQISKTTTHILQILAQL-TTNDLITEP---FTLSQLLMSLTSPNTLNMDQAERLFN 70
L+S L+ + +H LQ A L T+ L P L L ++ S + D A+ +F
Sbjct: 13 LLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSAADHADSVFA 72
Query: 71 QIYQP---NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
+ + + + NT++R + +S P+++L ++ M+R + D YT+P VLKACG G
Sbjct: 73 HLAEEASRHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPG 131
Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
G +HGE V+ G D+F N LI Y + G R VF+ ++DLVSWN ++ G
Sbjct: 132 CRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG-VRDLVSWNSMVAG 190
Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
+V CGE+ A+++FDEM Q+DA SW+ MIDGY + G + AR LF+ MP +DL+ WNSM
Sbjct: 191 YVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSM 250
Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
IDGYA+ G + A+ LF EMPERNV SWSI+IDGY + G P EAL F+ ML G++PD
Sbjct: 251 IDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDR 310
Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
++ +GA++ACAQ+GAL+ G+W+H ++++ ++ D++VQTALIDMY+KCG LD A+ IF S
Sbjct: 311 VAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFES 370
Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
M KK+V+++NVMI GLG +G+G +A+K F QMETE P DDL L VL +C+H+GL +EG
Sbjct: 371 MPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEG 430
Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
IF M++ G+EPK+EHY L+DLL RAG ++QA N +E+MPM+P LWG+LL +CR
Sbjct: 431 LGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCR 490
Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
+H+ V LAE+ VE L L ADD G+YVLLSNIYAD GMW+ RIRK+M +KK GR
Sbjct: 491 SHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGR 550
Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVI 576
SVIE+DG I EFV+G EE+ L +
Sbjct: 551 SVIEVDGQIHEFVNGGSSHPHKEEIYLTL 579
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/569 (47%), Positives = 381/569 (66%), Gaps = 9/569 (1%)
Query: 15 LVSLLQISKTTTHILQILAQL-TTNDLITEP---FTLSQLLMSLTSPNTLNMDQAERLFN 70
L+S L+ + +H LQ A L T+ L P L L ++ S + D A+ +F
Sbjct: 13 LLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSAADHADSVFA 72
Query: 71 QIYQP---NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
+ + + + NT++R + +S P+++L ++ M+R + D YT+P VLKACG G
Sbjct: 73 HLAEEASRHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRVAVAPDAYTFPAVLKACGCAPG 131
Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
G +HGE V+ G D+F N LI Y + G R VF+ ++DLVSWN ++ G
Sbjct: 132 CRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG-VRDLVSWNSMVAG 190
Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
+V CGE+ A+++FDEM Q+DA SW+ MIDGY + G + AR LF+ MP +DL+ WNSM
Sbjct: 191 YVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSM 250
Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
IDGYA+ G + A+ LF EMPERNV SWSI+IDGY + G P EAL F+ ML G++PD
Sbjct: 251 IDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLSCGIKPDR 310
Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
++ +GA++ACAQ+GAL+ G+W+H ++++ ++ D++VQTALIDMY+KCG LD A+ IF S
Sbjct: 311 VAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFES 370
Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
M KK+V+++NVMI GLG +G+G +A+K F QMETE P DDL L VL +C+H+GL +EG
Sbjct: 371 MPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSVLAVLTSCTHAGLVSEG 430
Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
IF M++ G+EPK+EHY L+DLL RAG ++QA N +E+MPM+P LWG+LL +CR
Sbjct: 431 LGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCR 490
Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
+H+ V LAE+ VE L L ADD G+YVLLSNIYAD GMW+ RIRK+M +KK GR
Sbjct: 491 SHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGR 550
Query: 548 SVIEIDGNIKEFVSGEIFDVQSEELELVI 576
SVIE+DG I EFV+G EE+ L +
Sbjct: 551 SVIEVDGQIHEFVNGGSSHPHKEEIYLTL 579
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/555 (48%), Positives = 376/555 (67%), Gaps = 9/555 (1%)
Query: 15 LVSLLQISKTTTHILQILAQL-TTNDLITEP---FTLSQLLMSLTSPNTLNMDQAERLFN 70
L+S L+ + +H LQ A L T+ L P L L ++ S + D A+ +F
Sbjct: 13 LLSRLRACSSASHALQCHALLLTSGHLAASPARLSNLLLLALASASASPSAADHADSVFA 72
Query: 71 QIYQP---NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMG 127
+ + + + NT++R + +S P+++L ++ M+R + D YT+P VLKACG G
Sbjct: 73 HLAEEASRHAFPWNTLVRLHAAAS-PRRSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPG 131
Query: 128 LVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRG 187
G +HGE V+ G D+F N LI Y + G R VF+ ++DLVSWN ++ G
Sbjct: 132 CRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGDCRSGRKVFDHG-VRDLVSWNSMVAG 190
Query: 188 FVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSM 247
+V CGE+ A+++FDEM Q+DA SW+ MIDGY + G + AR LF+ MP +DL+ WNSM
Sbjct: 191 YVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSM 250
Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
IDGYA+ G + A+ LF EMPERNV SWSI+IDGY + G P EAL F+ ML G++PD
Sbjct: 251 IDGYARHGRMDEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDR 310
Query: 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367
++ +GA++ACAQ+GAL+ G+W+H ++++ ++ D++VQTALIDMY+KCG LD A+ IF S
Sbjct: 311 VAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFES 370
Query: 368 MTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427
M KK+V+++NVMI GLG +G+G +A+K F QMETE P DDL L VL +C+H+GL +EG
Sbjct: 371 MPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEG 430
Query: 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACR 487
IF M++ G+EPK+EHY L+DLL RAG ++QA N +E+MPM+P LWG+LL +CR
Sbjct: 431 LGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCR 490
Query: 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547
+H+ V LAE+ VE L L ADD G+YVLLSNIYAD GMW+ RIRK+M +KK GR
Sbjct: 491 SHRCVELAELSVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGR 550
Query: 548 SVIEIDGNIKEFVSG 562
SVIE+DG I EFV+G
Sbjct: 551 SVIEVDGQIHEFVNG 565
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 264/571 (46%), Positives = 371/571 (64%), Gaps = 13/571 (2%)
Query: 15 LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIY- 73
L+S L+ + +H LQ A L T+ + L+ L + + A+ +F ++
Sbjct: 12 LLSRLRACTSASHALQCHALLLTSGHLAASPLRLSNLLLLALASASAVSHADAVFARLLP 71
Query: 74 ---QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC--GVLMGL 128
+ + NT+IR + +S P+ AL+++ M+R + D YT+P VLKAC GVL
Sbjct: 72 GPASRDAFPWNTLIRLHAPAS-PRNALAYFACMRRAAVEPDAYTFPAVLKACACGVL--- 127
Query: 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGF 188
G +H E V+ G D+F N L+ Y + G R VF+ +DLVSWN ++ G+
Sbjct: 128 --GLPVHAEAVRTGMDGDLFTRNALVSFYCRIGDCRSGRKVFDHGA-RDLVSWNSMVAGY 184
Query: 189 VECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248
V CGE+ A+E+FD MP +DA SW+ MID Y K+ G + AR LF+ P +DL+ W SMI
Sbjct: 185 VACGELELAQELFDGMPLRDAFSWATMIDAYGKRSGGVDRARELFDETPNRDLVCWCSMI 244
Query: 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308
DGYA+ G + A+ LF EMPERNV SWSI++DGY + G P EAL LF+ ML G++PD +
Sbjct: 245 DGYARQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQRMLRCGIKPDRV 304
Query: 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368
+ +GA +ACAQ+GAL+ G+W+H ++++ ++ D++VQTALIDMYMKCG LD + IF SM
Sbjct: 305 AAVGAFTACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYMKCGRLDLGKLIFESM 364
Query: 369 TKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428
K+V+++NVMI GLG + G A+K F QME EG P DDL L VL AC+H+GL +EG
Sbjct: 365 PDKSVVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDDLSVLAVLTACTHAGLISEGL 424
Query: 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488
IF M++ G++PK+EHY LVDLL RAG L+ A + +E+MPM+P LWG+LL ACR+
Sbjct: 425 GIFHRMRKDFGMDPKVEHYGALVDLLGRAGHLDHARHAIETMPMEPTPELWGSLLAACRS 484
Query: 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548
H+ V LAE+ VE L L ADD G+YVLLSNIYAD GMW+ RIR++M +KK+ GRS
Sbjct: 485 HRCVELAELSVERLASLGADDFGVYVLLSNIYADEGMWDGVFRIRRLMSAEGMKKDIGRS 544
Query: 549 VIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
VIE+DG EFV+G +E+ L++Q+
Sbjct: 545 VIEVDGQTHEFVNGGSSHSCKDEVHLMLQNL 575
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 249/474 (52%), Positives = 335/474 (70%), Gaps = 1/474 (0%)
Query: 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH 162
M+R + D YT+P VLKACG G G +HGE V+ G D+F N LI Y + G
Sbjct: 1 MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIGD 60
Query: 163 MGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK 222
R VF+ ++DLVSWN ++ G+V CGE+ A+++FDEM Q+DA SW+ MIDGY +
Sbjct: 61 CRSGRKVFDHG-VRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYGEM 119
Query: 223 KGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
G + AR LF+ MP +DL+ WNSMIDGYA+ G + A+ LF EMPERNV SWSI+IDGY
Sbjct: 120 AGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDGY 179
Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
+ G P EAL F+ ML G++PD ++ +GA++ACAQ+GAL+ G+W+H ++++ ++ D+
Sbjct: 180 VRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFDV 239
Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
+VQTALIDMY+KCG LD A+ IF SM KK+V+++NVMI GLG +G+G +A+K F QMETE
Sbjct: 240 VVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQMETE 299
Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
P DDL L VL +C+H+GL +EG IF M++ G+EPK+EHY L+DLL RAG ++Q
Sbjct: 300 RAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRVDQ 359
Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
A N +E+MPM+P LWG+LL +CR+H+ V LAE+ VE L L ADD G+YVLLSNIYAD
Sbjct: 360 ARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIYAD 419
Query: 523 AGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
GMW+ RIRK+M +KK GRSVIE+DG I EFV+G EE+ L +
Sbjct: 420 EGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIYLTL 473
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 233/558 (41%), Positives = 359/558 (64%), Gaps = 8/558 (1%)
Query: 26 THILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIR 85
HI ++ AQ+ +L + + +L+ + + + +N+ A +FNQI PN +++NT+IR
Sbjct: 37 NHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNL--AVNVFNQIQDPNVHLYNTLIR 94
Query: 86 GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145
+ Q+S KA + + +M++ GL DN+TYPF+LKAC L IH V K GF
Sbjct: 95 AHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFG 154
Query: 146 DVFVVNGLIGMYSKCGHMGC--ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDE 203
D+FV N LI YSKCG +G A +F KDLVSWN ++ G V+ G++G+AR++FDE
Sbjct: 155 DLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDE 214
Query: 204 MPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQL 263
M ++DA+SW+ ++DGY K G++S A LFE MP ++++SW++M+ GY K GD+ A+ L
Sbjct: 215 MAERDAVSWNTILDGYVKA-GEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARML 273
Query: 264 FNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
F++MP +N+ +W+I+I G+A+ G KEA L+ +M G++PD +++ ++ACA+ G L
Sbjct: 274 FDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESGLL 333
Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
LGK +H +K+ RI + V AL+DMY KCG +D+A IF M+ ++++S+N M+ GL
Sbjct: 334 VLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGL 393
Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
M+G GE+A++ F++M+ EG D + + +L AC+H+G +G F SM+R GI P
Sbjct: 394 AMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSMERDHGIVPH 453
Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLV 503
+EHY C++DLL R G LE+A +V+SMPM+PN +WGTLL ACR H V LAE V++ L+
Sbjct: 454 IEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLAEKVLDRLI 513
Query: 504 ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGE 563
L+ D G Y +LSNI+A AG W +R M+ ++K +G S IE+D + EF
Sbjct: 514 TLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDEVHEFT--- 570
Query: 564 IFDVQSEELELVIQSFVK 581
+FD E + + Q VK
Sbjct: 571 VFDKSHPETDKIYQILVK 588
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 586 | ||||||
| TAIR|locus:2094812 | 600 | AT3G29230 "AT3G29230" [Arabido | 0.940 | 0.918 | 0.387 | 3e-108 | |
| TAIR|locus:2054966 | 555 | AHG11 "ABA hypersensitive germ | 0.883 | 0.933 | 0.358 | 5.9e-96 | |
| TAIR|locus:2151694 | 550 | AT5G37570 "AT5G37570" [Arabido | 0.868 | 0.925 | 0.357 | 1.7e-89 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.853 | 0.640 | 0.352 | 1.3e-82 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.889 | 0.598 | 0.336 | 3.3e-79 | |
| TAIR|locus:2077878 | 685 | AT3G08820 "AT3G08820" [Arabido | 0.959 | 0.820 | 0.305 | 4.1e-79 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.617 | 0.572 | 0.427 | 5.4e-79 | |
| TAIR|locus:2010012 | 474 | AT1G13410 "AT1G13410" [Arabido | 0.737 | 0.911 | 0.382 | 3e-78 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.872 | 0.645 | 0.335 | 7.9e-78 | |
| TAIR|locus:2121055 | 559 | AT4G38010 "AT4G38010" [Arabido | 0.880 | 0.923 | 0.326 | 1.6e-77 |
| TAIR|locus:2094812 AT3G29230 "AT3G29230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1070 (381.7 bits), Expect = 3.0e-108, P = 3.0e-108
Identities = 216/558 (38%), Positives = 338/558 (60%)
Query: 28 ILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGY 87
+ Q+ AQ+ +L + +L+ +L+ N+ A R+FNQ+ +PN ++ N++IR +
Sbjct: 35 VKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNL--AVRVFNQVQEPNVHLCNSLIRAH 92
Query: 88 TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV 147
Q+S P +A + M+R GL DN+TYPF+LKAC L +H + K+G D+
Sbjct: 93 AQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDI 152
Query: 148 FVVNGLIGMYSKCGHMGC--ARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP 205
+V N LI YS+CG +G A +FE +D VSWN +L G V+ GE+ AR +FDEMP
Sbjct: 153 YVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMP 212
Query: 206 QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFN 265
Q+D ISW+ M+DGY + + ++S A LFE MP ++ +SW++M+ GY+K GD+ A+ +F+
Sbjct: 213 QRDLISWNTMLDGYARCR-EMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFD 271
Query: 266 EMP--ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGAL 323
+MP +NV +W+I+I GYA+ G KEA L +M+ G++ D +V+ ++AC + G L
Sbjct: 272 KMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLL 331
Query: 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383
LG IH +KRS + + V AL+DMY KCG+L +A +F + KK+++S+N M+ GL
Sbjct: 332 SLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGL 391
Query: 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443
G++G G+EA++ F++M EGI D + F+ VL +C+H+GL EG F SM++ + P+
Sbjct: 392 GVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVPQ 451
Query: 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNXXXXXXXXXXXX 503
+EHY CLVDLL R G L++A+ +V++MPM+PN+ +WG LL ACR H
Sbjct: 452 VEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDNLV 511
Query: 504 XXKADDCGLYVLLSNIYADAGMWEHALXXXXXXXXXXXXXETGRSVIEIDGNIKEFVSGE 563
D G Y LLSNIYA A WE +G S +E++ I EF +
Sbjct: 512 KLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFD 571
Query: 564 IFDVQSEELELVIQSFVK 581
+S+++ ++ S ++
Sbjct: 572 KSHPKSDQIYQMLGSLIE 589
|
|
| TAIR|locus:2054966 AHG11 "ABA hypersensitive germination 11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
Identities = 188/525 (35%), Positives = 310/525 (59%)
Query: 56 SPNTLNMDQAERLFNQIYQ-PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV-DNY 113
S + + + A +LF+Q Q ++++ N+MI+ Y ++ + + Y +++++ DN+
Sbjct: 20 SASAVGIGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNF 79
Query: 114 TYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173
T+ + K+C + M + +G ++H ++ + GF D++V G++ MY+K G MGCAR+ F+
Sbjct: 80 TFTTLTKSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEM 139
Query: 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ-KDAISWSIMIDGYRKKKGDISSARIL 232
+ VSW ++ G++ CGE+ A ++FD+MP KD + ++ M+DG+ K GD++SAR L
Sbjct: 140 PHRSEVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGF-VKSGDMTSARRL 198
Query: 233 FEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292
F+ M K +I+W +MI GY I D+ AA++LF+ MPERN+ SW+ MI GY Q+ P+E +
Sbjct: 199 FDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGI 258
Query: 293 YLFREMLCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351
LF+EM + PD ++++ + A + GAL LG+W H F++R ++ + V TA++DM
Sbjct: 259 RLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDM 318
Query: 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIF 411
Y KCG +++A+RIF M +K V S+N MI G +NG AL F M E P D++
Sbjct: 319 YSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEEKP-DEITM 377
Query: 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471
L V+ AC+H GL EG + F M R G+ K+EHY C+VDLL RAG L++A +++ +MP
Sbjct: 378 LAVITACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMP 436
Query: 472 MKPNLALWGTLLLACRNHQNXXXXXXXXXXXXXXKADDCGLYVLLSNIYADAGMWEHALX 531
+PN + + L AC +++ + + G YVLL N+YA W+
Sbjct: 437 FEPNGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGM 496
Query: 532 XXXXXXXXXXXXETGRSVIEIDGNIKEFVSGEIFDVQSEELELVI 576
E G S+IEI+ + EF+SG+ + LV+
Sbjct: 497 VKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVL 541
|
|
| TAIR|locus:2151694 AT5G37570 "AT5G37570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 184/515 (35%), Positives = 304/515 (59%)
Query: 15 LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ 74
L +L ++ K+ H+ QI A++ L + +S + +S +S ++ ++ + +F ++
Sbjct: 13 LETLFKLCKSEIHLNQIHARIIRKGLEQDQNLIS-IFISSSSSSSSSLSYSSSVFERVPS 71
Query: 75 PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLKACGVLMGLVEGTE 133
P TY+ N +I+GY+ + +S + M R GL D YT+P V+K C + G+
Sbjct: 72 PGTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSS 131
Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
+HG V+++GF DV V + Y KC + AR VF ++ VSW ++ +V+ GE
Sbjct: 132 VHGLVLRIGFDKDVVVGTSFVDFYGKCKDLFSARKVFGEMPERNAVSWTALVVAYVKSGE 191
Query: 194 MGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253
+ +A+ +FD MP+++ SW+ ++DG K GD+ +A+ LF+ MP +D+IS+ SMIDGYAK
Sbjct: 192 LEEAKSMFDLMPERNLGSWNALVDGL-VKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAK 250
Query: 254 IGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313
GD+V+A+ LF E +V +WS +I GYAQ+G P EA +F EM + V+PD ++G
Sbjct: 251 GGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGL 310
Query: 314 ISACAQVGALDLGKWIHVFM--KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK 371
+SAC+Q+G +L + + ++ + ++ + +V ALIDM KCG +D A ++F M ++
Sbjct: 311 MSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVP-ALIDMNAKCGHMDRAAKLFEEMPQR 369
Query: 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431
+++SY M+ G+ ++G G EA++ F +M EGI D++ F +L C S L EG R F
Sbjct: 370 DLVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYF 429
Query: 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQN 491
+ M++ I +HYSC+V+LLSR G+L++A +++SMP + + + WG+LL C H N
Sbjct: 430 ELMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGN 489
Query: 492 XXXXXXXXXXXXXXKADDCGLYVLLSNIYADAGMW 526
+ G YVLLSNIYA W
Sbjct: 490 TEIAEVVARHLFELEPQSAGSYVLLSNIYAALDRW 524
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
Identities = 181/513 (35%), Positives = 292/513 (56%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYP-FVLK 120
+D A +F+++ + N N ++ Y Q+S ++A + + + L+ N FV K
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKK 232
Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
+VE + + + DV N +I Y++ G + AR +F+ S ++D+ +
Sbjct: 233 K-----KIVEARQFFDSMN----VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFT 283
Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD-ISSARILFEHMPIK 239
W ++ G+++ + +ARE+FD+MP+++ +SW+ M+ GY +G+ + A+ LF+ MP +
Sbjct: 284 WTAMVSGYIQNRMVEEARELFDKMPERNEVSWNAMLAGY--VQGERMEMAKELFDVMPCR 341
Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299
++ +WN+MI GYA+ G + A+ LF++MP+R+ SW+ MI GY+Q G+ EAL LF +M
Sbjct: 342 NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQME 401
Query: 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359
+G R + S A+S CA V AL+LGK +H + + V AL+ MY KCGS++
Sbjct: 402 REGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIE 461
Query: 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419
EA +F M K+++S+N MIAG +GFGE AL+ F M+ EG+ DD + VL ACS
Sbjct: 462 EANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACS 521
Query: 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479
H+GL +G + F +M + G+ P +HY+C+VDLL RAG LE A N++++MP +P+ A+W
Sbjct: 522 HTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIW 581
Query: 480 GTLLLACRNHQNXXXXXXXXXXXXXXKADDCGLYVLLSNIYADAGMWEHALXXXXXXXXX 539
GTLL A R H N + ++ G+YVLLSN+YA +G W
Sbjct: 582 GTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDK 641
Query: 540 XXXXETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
G S IEI F G+ F + +E+
Sbjct: 642 GVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEI 674
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
Identities = 180/535 (33%), Positives = 289/535 (54%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
+D A ++F+++ + + N++I GY + +K LS +V M G+ +D T V
Sbjct: 246 VDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAG 305
Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
C + G +H VK F + N L+ MYSKCG + A++VF + +VS+
Sbjct: 306 CADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSY 365
Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFE----HMP 237
++ G+ G G+A ++F+EM +++ IS + + R+L E H
Sbjct: 366 TSMIAGYAREGLAGEAVKLFEEM-EEEGISPDVYT--VTAVLNCCARYRLLDEGKRVHEW 422
Query: 238 IK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291
IK D+ N+++D YAK G + A+ +F+EM +++ SW+ +I GY+++ EA
Sbjct: 423 IKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEA 482
Query: 292 LYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350
L LF +L + PD +V + ACA + A D G+ IH ++ R+ D V +L+D
Sbjct: 483 LSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVD 542
Query: 351 MYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410
MY KCG+L A +F + K+++S+ VMIAG GM+GFG+EA+ F QM GI D++
Sbjct: 543 MYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEIS 602
Query: 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
F+ +L ACSHSGL EG+R F M+ C IEP +EHY+C+VD+L+R G+L +A +E+M
Sbjct: 603 FVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENM 662
Query: 471 PMKPNLALWGTLLLACRNHQNXXXXXXXXXXXXXXKADDCGLYVLLSNIYADAGMWEHAL 530
P+ P+ +WG LL CR H + + ++ G YVL++NIYA+A WE
Sbjct: 663 PIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVK 722
Query: 531 XXXXXXXXXXXXXETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585
G S IEI G + FV+G+ + ++E +E ++ IE
Sbjct: 723 RLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIE 777
|
|
| TAIR|locus:2077878 AT3G08820 "AT3G08820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 4.1e-79, Sum P(2) = 4.1e-79
Identities = 179/586 (30%), Positives = 302/586 (51%)
Query: 17 SLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER---LFNQIY 73
+L+ ++ T H+ QI L + L + F ++ LL TL Q + LF+
Sbjct: 18 TLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLK-----RTLFFRQTKYSYLLFSHTQ 72
Query: 74 QPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTE 133
PN +++N++I G+ + + L ++++++ GL + +T+P VLKAC G +
Sbjct: 73 FPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGID 132
Query: 134 IHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGE 193
+H VVK GF DV + L+ +YS G + A +F+ + +V+W + G+ G
Sbjct: 133 LHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGR 192
Query: 194 MGKAREVFDEMPQ---KDAISWSIMIDGYRKKKGDISSARILFEHMPI----KDLISWNS 246
+A ++F +M + K + + + GD+ S + ++M K+ +
Sbjct: 193 HREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTT 252
Query: 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD 306
+++ YAK G + A+ +F+ M E+++ +WS MI GYA + PKE + LF +ML + ++PD
Sbjct: 253 LVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPD 312
Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
S++G +S+CA +GALDLG+W + R ++ + ALIDMY KCG++ +F
Sbjct: 313 QFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFK 372
Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
M +K+++ N I+GL NG + + F Q E GI D FLG+L C H+GL +
Sbjct: 373 EMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQD 432
Query: 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486
G R F ++ ++ +EHY C+VDL RAG L+ A ++ MPM+PN +WG LL C
Sbjct: 433 GLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGC 492
Query: 487 RNHQNXXXXXXXXXXXXXXKADDCGLYVLLSNIYADAGMWEHALXXXXXXXXXXXXXETG 546
R ++ + + G YV LSNIY+ G W+ A G
Sbjct: 493 RLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPG 552
Query: 547 RSVIEIDGNIKEFVSGE----IFD---VQSEEL--ELVIQSFVKTT 583
S IE++G + EF++ + + D + E+L E+ + FV TT
Sbjct: 553 YSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTT 598
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 156/365 (42%), Positives = 239/365 (65%)
Query: 215 MIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFS 274
++D Y K GD+ SA+ +F+ MP + L+S +MI YAK G++ AA+ LF+ M ER++ S
Sbjct: 167 LVDVYAKG-GDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVS 225
Query: 275 WSIMIDGYAQHGNPKEALYLFREMLCQGV-RPDVISVMGAISACAQVGALDLGKWIHVFM 333
W++MIDGYAQHG P +AL LF+++L +G +PD I+V+ A+SAC+Q+GAL+ G+WIHVF+
Sbjct: 226 WNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFV 285
Query: 334 KRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEAL 393
K SRI +++ V T LIDMY KCGSL+EA +F +K+++++N MIAG M+G+ ++AL
Sbjct: 286 KSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDAL 345
Query: 394 KCFAQME-TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452
+ F +M+ G+ D+ F+G L AC+H+GL EG RIF+SM + GI+PK+EHY CLV
Sbjct: 346 RLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVS 405
Query: 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNXXXXXXXXXXXXXXKADDCGL 512
LL RAG+L++A +++M M + LW ++L +C+ H + + G+
Sbjct: 406 LLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGI 465
Query: 513 YVLLSNIYADAGMWEHALXXXXXXXXXXXXXETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
YVLLSNIYA G +E E G S IEI+ + EF +G+ +S+E+
Sbjct: 466 YVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEI 525
Query: 573 ELVIQ 577
+++
Sbjct: 526 YTMLR 530
|
|
| TAIR|locus:2010012 AT1G13410 "AT1G13410" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
Identities = 167/437 (38%), Positives = 256/437 (58%)
Query: 153 LIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISW 212
L GM G + A VF K++V W ++ G++ ++ AR FD P++D + W
Sbjct: 34 LFGMLCLMGVIASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLW 93
Query: 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
+ MI GY + G++ AR LF+ MP +D++SWN++++GYA IGD+ A +++F++MPERNV
Sbjct: 94 NTMISGYIEM-GNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNV 152
Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHV 331
FSW+ +I GYAQ+G E L F+ M+ +G V P+ ++ +SACA++GA D GKW+H
Sbjct: 153 FSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHK 212
Query: 332 FMKRSRIT-MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390
+ + +D+ V+ ALIDMY KCG+++ A +F + ++++IS+N MI GL +G G
Sbjct: 213 YGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGT 272
Query: 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450
EAL F +M+ GI D + F+GVL AC H GL +G F SM I P++EH C+
Sbjct: 273 EALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCV 332
Query: 451 VDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNXXXXXXXXXXXXXXKADDC 510
VDLLSRAG L QA+ + MP+K + +W TLL A + ++ + +
Sbjct: 333 VDLLSRAGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNP 392
Query: 511 GLYVLLSNIYADAGMWEHALXXXXXXXXXXXXXETGRSVIEID-GNIKEFVSGEIFDVQS 569
+V+LSNIY DAG ++ A E G S IE D G +K + SGE ++
Sbjct: 393 ANFVMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKHP-RT 451
Query: 570 EELELVIQSFVKTTIER 586
EEL+ +++ I R
Sbjct: 452 EELQRILRELKSFNILR 468
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 173/516 (33%), Positives = 281/516 (54%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL-VDNYTYPFVLK 120
++ A ++F+++ + +T + NTMI GY ++ +++ + ++ + +D T +L
Sbjct: 170 VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILP 229
Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
A L L G +IH K G +V+ G I +YSKCG + ++F D+V+
Sbjct: 230 AVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVA 289
Query: 181 WNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKD 240
+N ++ G+ GE + +F E+ A S + G + + + +
Sbjct: 290 YNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSN 349
Query: 241 LISWNSMIDG----YAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296
+S S+ Y+K+ ++ +A++LF+E PE+++ SW+ MI GY Q+G ++A+ LFR
Sbjct: 350 FLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFR 409
Query: 297 EMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356
EM P+ +++ +SACAQ+GAL LGKW+H ++ + + V TALI MY KCG
Sbjct: 410 EMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCG 469
Query: 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416
S+ EARR+F MTKKN +++N MI+G G++G G+EAL F +M GI + FL VL
Sbjct: 470 SIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLY 529
Query: 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL 476
ACSH+GL EG IF SM G EP ++HY+C+VD+L RAG L++AL +E+M ++P
Sbjct: 530 ACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGS 589
Query: 477 ALWGTLLLACRNHQNXXXXXXXXXXXXXXKADDCGLYVLLSNIYADAGMWEHALXXXXXX 536
++W TLL ACR H++ D+ G +VLLSNI++ + A
Sbjct: 590 SVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTA 649
Query: 537 XXXXXXXETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
G ++IEI F SG+ Q +E+
Sbjct: 650 KKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEI 685
|
|
| TAIR|locus:2121055 AT4G38010 "AT4G38010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
Identities = 171/523 (32%), Positives = 278/523 (53%)
Query: 12 KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQ 71
K+ L+ L+ + QI QL T DL+ + +++++ L + L +
Sbjct: 6 KSVLLELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSI 65
Query: 72 IYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEG 131
+++ +NT++ Y P+ + Y G D +T+P V KACG G+ EG
Sbjct: 66 RSVLSSFSYNTLLSSYAVCDKPRVTIFAYKTFVSNGFSPDMFTFPPVFKACGKFSGIREG 125
Query: 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVEC 191
+IHG V KMGF D++V N L+ Y CG A VF ++D+VSW ++ GF
Sbjct: 126 KQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVFGEMPVRDVVSWTGIITGFTRT 185
Query: 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSAR----ILFEHMPIKDLISWNSM 247
G +A + F +M + ++ + + + G +S + ++ + + L + N++
Sbjct: 186 GLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNAL 245
Query: 248 IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREM-LCQGVRPD 306
ID Y K L A ++F E+ +++ SW+ MI G KEA+ LF M G++PD
Sbjct: 246 IDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPD 305
Query: 307 VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFY 366
+ +SACA +GA+D G+W+H ++ + I D + TA++DMY KCG ++ A IF
Sbjct: 306 GHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFN 365
Query: 367 SMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426
+ KNV ++N ++ GL ++G G E+L+ F +M G + + FL L AC H+GL E
Sbjct: 366 GIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDE 425
Query: 427 GYRIFQSMK-RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485
G R F MK R + PKLEHY C++DLL RAG L++AL +V++MP+KP++ + G +L A
Sbjct: 426 GRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSA 485
Query: 486 CRNHQNXXXX-XXXXXXXXXXKADDCGLYVLLSNIYADAGMWE 527
C+N + +D G+YVLLSNI+A W+
Sbjct: 486 CKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWD 528
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LS72 | PP261_ARATH | No assigned EC number | 0.4035 | 0.9436 | 0.9216 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 586 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-118 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-87 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-67 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-43 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-39 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 369 bits (949), Expect = e-118
Identities = 186/522 (35%), Positives = 295/522 (56%), Gaps = 9/522 (1%)
Query: 65 AERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124
A +F+++ + + N MI GY ++ + L + M+ + D T V+ AC +
Sbjct: 241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACEL 300
Query: 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLV 184
L G E+HG VVK GF DV V N LI MY G G A VF E KD VSW +
Sbjct: 301 LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360
Query: 185 LRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKK---KGDISSARILFEHMPIKDL 241
+ G+ + G KA E + M Q + I I GD+ L E K L
Sbjct: 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420
Query: 242 ISW----NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297
IS+ N++I+ Y+K + A ++F+ +PE++V SW+ +I G + EAL FR+
Sbjct: 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480
Query: 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357
ML ++P+ ++++ A+SACA++GAL GK IH + R+ I D + AL+D+Y++CG
Sbjct: 481 MLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539
Query: 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417
++ A F + +K+V+S+N+++ G +G G A++ F +M G+ D++ F+ +L A
Sbjct: 540 MNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598
Query: 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLA 477
CS SG+ T+G F SM+ I P L+HY+C+VDLL RAG+L +A N + MP+ P+ A
Sbjct: 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA 658
Query: 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537
+WG LL ACR H++V L E+ + + EL + G Y+LL N+YADAG W+ R+RK MR
Sbjct: 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718
Query: 538 KRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSF 579
+ + + G S +E+ G + F++ + Q +E+ V++ F
Sbjct: 719 ENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGF 760
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 283 bits (725), Expect = 9e-87
Identities = 146/470 (31%), Positives = 255/470 (54%), Gaps = 7/470 (1%)
Query: 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSV 169
+ TY +++AC L + ++ V GF D +++N ++ M+ KCG + AR +
Sbjct: 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRL 180
Query: 170 FEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSA 229
F+ ++L SW ++ G V+ G +A +F EM + + + + + SA
Sbjct: 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 230 RI-------LFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282
R + + + D ++ID Y+K GD+ A+ +F+ MPE+ +W+ M+ GY
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY 300
Query: 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342
A HG +EAL L+ EM GV D + I +++ L+ K H + R+ +D+
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360
Query: 343 IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE 402
+ TAL+D+Y K G +++AR +F M +KN+IS+N +IAG G +G G +A++ F +M E
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 403 GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462
G+ + + FL VL AC +SGL+ +G+ IFQSM + I+P+ HY+C+++LL R G L++
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480
Query: 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522
A ++ P KP + +W LL ACR H+N+ L + E L + + YV+L N+Y
Sbjct: 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540
Query: 523 AGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEEL 572
+G A ++ + ++++ + + IE+ F SG+ QS E+
Sbjct: 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREI 590
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 235 bits (600), Expect = 1e-67
Identities = 141/440 (32%), Positives = 223/440 (50%), Gaps = 31/440 (7%)
Query: 61 NMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120
+ A +F ++ + + + N ++ GY ++ +AL Y M G+ D YT+P VL+
Sbjct: 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195
Query: 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS 180
CG + L G E+H VV+ GF DV VVN LI MY KCG + AR VF+ +D +S
Sbjct: 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS 255
Query: 181 WNLVLRGFVECGEMGKAREVF----------DEMPQKDAISWSIMIDGYRKKKGDISSAR 230
WN ++ G+ E GE + E+F D M IS ++ GD R
Sbjct: 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL-------GDERLGR 308
Query: 231 ILFEHMPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
+ ++ +K D+ NS+I Y +G A+++F+ M ++ SW+ MI GY ++
Sbjct: 309 EMHGYV-VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367
Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ 345
G P +AL + M V PD I++ +SACA +G LD+G +H +R + ++V
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427
Query: 346 TALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
ALI+MY KC +D+A +F+++ +K+VIS+ +IAGL +N EAL F QM P
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKP 487
Query: 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY--SCLVDLLSRAGELEQA 463
+ + + L AC+ G G I + R GI + + + L+DL R G + A
Sbjct: 488 -NSVTLIAALSACARIGALMCGKEIHAHVLR-TGI--GFDGFLPNALLDLYVRCGRMNYA 543
Query: 464 LNIVESMPMKPNLALWGTLL 483
N S + ++ W LL
Sbjct: 544 WNQFNS--HEKDVVSWNILL 561
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 1e-43
Identities = 102/355 (28%), Positives = 172/355 (48%), Gaps = 53/355 (14%)
Query: 182 NLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM----- 236
N +L FV GE+ A VF +MP++D SW++++ GY K G A L+ M
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGY-AKAGYFDEALCLYHRMLWAGV 183
Query: 237 ---------------PIKDLIS-------------------WNSMIDGYAKIGDLVAAQQ 262
I DL N++I Y K GD+V+A+
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243
Query: 263 LFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322
+F+ MP R+ SW+ MI GY ++G E L LF M V PD++++ ISAC +G
Sbjct: 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303
Query: 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAG 382
LG+ +H ++ ++ +D+ V +LI MY+ GS EA ++F M K+ +S+ MI+G
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363
Query: 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH-CGIE 441
NG ++AL+ +A ME + + D++ VL AC+ G G +K H
Sbjct: 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG------VKLHELAER 417
Query: 442 PKLEHY----SCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA-CRNHQN 491
L Y + L+++ S+ +++AL + ++P K ++ W +++ N++
Sbjct: 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRC 471
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 1e-39
Identities = 98/327 (29%), Positives = 163/327 (49%), Gaps = 30/327 (9%)
Query: 62 MDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121
+ A RLF+++ + N T+I G + N ++A + + M G + T+ +L+A
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181
L G ++H V+K G + D FV LI MYSKCG + AR VF+G K V+W
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAW 293
Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRKKKGDISSARILFEH-- 235
N +L G+ G +A ++ EM D ++SIMI I S L EH
Sbjct: 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI--------RIFSRLALLEHAK 345
Query: 236 ----------MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285
P+ D+++ +++D Y+K G + A+ +F+ MP +N+ SW+ +I GY H
Sbjct: 346 QAHAGLIRTGFPL-DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404
Query: 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS-RITMDMIV 344
G +A+ +F M+ +GV P+ ++ + +SAC G + G I M + RI +
Sbjct: 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464
Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKK 371
+I++ + G LDEA Y+M ++
Sbjct: 465 YACMIELLGREGLLDEA----YAMIRR 487
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 5e-18
Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 15/265 (5%)
Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMP----ERNVFSWSIMIDGYAQHGNPKEALYLF 295
D + ++I AK G + A ++F+EM E NV ++ +IDG A+ G +A +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530
Query: 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR--ITMDMIVQTALIDMYM 353
M + V+PD + ISAC Q GA+D + MK I D I AL+
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590
Query: 354 KCGSLDEARRIFYSMTKKNVIS----YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409
G +D A+ ++ + + N+ Y + + G + AL + M+ +G+ D++
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE- 468
F ++ H+G + + I Q ++ GI+ YS L+ S A ++AL + E
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYED 709
Query: 469 --SMPMKPNLALWGTLLLA-CRNHQ 490
S+ ++P ++ L+ A C +Q
Sbjct: 710 IKSIKLRPTVSTMNALITALCEGNQ 734
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 2e-14
Identities = 65/262 (24%), Positives = 112/262 (42%), Gaps = 24/262 (9%)
Query: 243 SWNSMIDGYAKIGDLVAAQQLFNEM------PERNVFSWSIMIDGYAQHGNPKEALYLFR 296
++ ++IDG A+ G + A + M P+R VF+ +I Q G A +
Sbjct: 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN--ALISACGQSGAVDRAFDVLA 566
Query: 297 EMLCQG--VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354
EM + + PD I+V + ACA G +D K ++ + I V T ++ +
Sbjct: 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626
Query: 355 CGSLDEARRIFYSMTKKNVISYNVMIAGL----GMNGFGEEALKCFAQMETEGIPKDDLI 410
G D A I+ M KK V V + L G G ++A + +GI +
Sbjct: 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686
Query: 411 FLGVLIACSHSG---LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467
+ ++ ACS++ A E Y +S+K + P + + L+ L +L +AL ++
Sbjct: 687 YSSLMGACSNAKNWKKALELYEDIKSIK----LRPTVSTMNALITALCEGNQLPKALEVL 742
Query: 468 ESMP---MKPNLALWGTLLLAC 486
M + PN + LL+A
Sbjct: 743 SEMKRLGLCPNTITYSILLVAS 764
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 3e-13
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 15/212 (7%)
Query: 279 IDGYAQHGNPKEALYLFREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337
I+ G +EAL LF + + + AC + ++ K ++ ++ S
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFA 397
D + ++ M++KCG L +ARR+F M ++N+ S+ +I GL G EA F
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213
Query: 398 QMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY-----SC-LV 451
+M +G + F+ +L A + G A G ++ HC + K SC L+
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL------HCCV-LKTGVVGDTFVSCALI 266
Query: 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLL 483
D+ S+ G++E A + + MP K +A W ++L
Sbjct: 267 DMYSKCGDIEDARCVFDGMPEKTTVA-WNSML 297
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 59/296 (19%), Positives = 111/296 (37%), Gaps = 44/296 (14%)
Query: 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344
HG ++AL L M V D + + C A++ G + S ++ + +
Sbjct: 64 HGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRL 123
Query: 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
A++ M+++ G L A +F M ++++ S+NV++ G G+ +EAL + +M G+
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183
Query: 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464
D F VL C G + + R G E ++ + L+ + + G++ A
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF-GFELDVDVVNALITMYVKCGDVVSAR 242
Query: 465 NIVESMPMK----------------------------------PNLALWGTLLLACRNHQ 490
+ + MP + P+L +++ AC
Sbjct: 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302
Query: 491 NVTLAE-----VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541
+ L VV G A D + L +Y G W A ++ M +
Sbjct: 303 DERLGREMHGYVVKTGF----AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 4e-11
Identities = 22/50 (44%), Positives = 36/50 (72%), Gaps = 4/50 (8%)
Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPER----NVFSWSIMIDGYAQ 284
D++++N++IDGY K G + A +LFNEM +R NV+++SI+IDG +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 3e-09
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI--SVMGAISACAQ 319
+V +++ +IDGY + G +EAL LF EM +G++P+V S++ I +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL--IDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 9e-09
Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 11/177 (6%)
Query: 302 GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT--ALIDMYMKCGSLD 359
G++ D IS CA+ G +D VF + ++ V T ALID + G +
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDA--MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524
Query: 360 EARRIFYSMTKKNV----ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD-DLIFLGV 414
+A + M KNV + +N +I+ G +G + A A+M+ E P D D I +G
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584
Query: 415 LI-ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470
L+ AC+++G ++Q + + I+ E Y+ V+ S+ G+ + AL+I + M
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 15/50 (30%), Positives = 34/50 (68%), Gaps = 4/50 (8%)
Query: 176 KDLVSWNLVLRGFVECGEMGKAREVFDEMPQK----DAISWSIMIDGYRK 221
D+V++N ++ G+ + G++ +A ++F+EM ++ + ++SI+IDG K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 75 PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122
P+ +NT+I GY + ++AL + MK++G+ + YTY ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-07
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV 307
+++ +IDG + G +EAL LF+EM +G+ PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 6e-07
Identities = 48/239 (20%), Positives = 102/239 (42%), Gaps = 11/239 (4%)
Query: 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---- 369
+S CA +D + ++ + + D + T LI K G +D +F+ M
Sbjct: 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV 503
Query: 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429
+ NV ++ +I G G +A + M ++ + D ++F ++ AC SG +
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563
Query: 430 IFQSMKRHCG-IEPKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWGTLLLA 485
+ MK I+P L+ + AG++++A + + + +K ++ + +
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623
Query: 486 CRNHQNVTLAEVVVEGLVE--LKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542
C + A + + + + +K D+ L+ ++ AG + A I + RK+ IK
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV-DVAGHAGDLDKAFEILQDARKQGIK 681
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303
+++ +I GY + G +EAL LF+EM +GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTKK----NVISYNVMIAGL 383
D++ LID Y K G ++EA ++F M K+ NV +Y+++I GL
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
+++NS+I GY K G L A +LF EM E+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-05
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405
+V++YN +I G G EEALK F +M+ GI
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK 35
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 207 KDAISWSIMIDGYRKKKGDISSARILFEHMPIK----DLISWNSMIDGYAK 253
D ++++ +IDGY KKG + A LF M + ++ +++ +IDG K
Sbjct: 1 PDVVTYNTLIDGY-CKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (94), Expect = 8e-05
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 269 ERNVFSWSIMIDGYAQHGNPKEALYLFREM 298
+ +V +++ +IDG + G EA+ L EM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMP 268
D++++N++IDG + G + A +L +EM
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404
++YN +I+G G EEAL+ F +M+ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305
+ +++ ++ A+ G+P AL + EM G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD 408
++YN +I GL G EEAL+ F +M+ GI D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272
L ++N+++ AK GD A + EM +
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGL 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 586 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.74 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.71 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.7 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.67 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.6 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.59 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.52 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.51 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.42 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.42 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.42 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.4 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.36 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.36 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.35 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.31 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.3 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.3 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.26 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.24 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.23 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.18 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.18 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.17 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.13 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.11 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.11 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.1 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.09 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.08 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.06 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.05 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.05 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.05 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.04 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.04 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.0 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.0 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.98 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.98 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.95 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.95 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.93 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.87 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.86 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.86 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.83 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.8 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.8 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.8 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.75 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.74 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.73 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.66 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.65 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.64 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.61 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.61 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.61 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.6 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.58 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.58 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.57 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.56 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.56 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.53 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.52 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.5 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.49 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.48 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.44 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.43 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.42 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.41 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.4 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.38 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.37 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.31 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.31 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.3 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.22 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.15 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.13 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.13 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.08 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.07 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.07 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.06 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.04 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.03 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.02 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.01 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.0 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.97 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.92 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.91 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.9 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.88 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.83 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.78 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.77 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.76 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.73 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.72 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.7 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.67 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.65 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.62 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.6 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.59 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.58 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.58 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.57 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.56 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.54 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.53 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.52 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.48 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.46 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.45 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.43 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.42 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.39 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.39 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.38 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.36 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.36 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.34 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.34 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.33 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.33 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.28 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.25 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.25 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.22 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.22 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.21 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.18 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.06 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.05 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.02 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.01 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 97.0 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.98 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.97 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.94 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.92 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.91 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.89 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.84 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.77 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.73 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.72 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.72 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.68 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.68 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.67 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.63 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.58 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.55 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.44 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.39 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.37 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.3 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.24 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.24 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.24 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.21 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.2 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.19 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.15 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.13 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.12 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.03 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.02 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.95 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.91 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.88 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.74 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.69 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.68 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.63 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.63 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.53 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.43 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.26 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.25 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.23 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.14 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.93 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.89 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.89 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.88 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.87 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.83 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.82 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.73 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.69 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.53 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.49 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.41 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.36 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.08 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.03 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.0 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.99 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.96 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.95 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.83 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.83 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.69 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.68 | |
| PRK09687 | 280 | putative lyase; Provisional | 93.25 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.17 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.15 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.09 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.98 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.83 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.82 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.78 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.67 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.51 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 92.4 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.38 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.23 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.12 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.05 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.98 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.89 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 91.87 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 91.42 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.39 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.36 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.36 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.85 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 90.76 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 90.63 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.51 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.33 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.23 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.98 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.93 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.81 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 89.76 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 89.76 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.69 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.64 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.48 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.39 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.33 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.06 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.96 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.96 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.88 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.8 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.33 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.23 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 88.08 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.74 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 87.66 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 87.48 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 87.06 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.85 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.69 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.63 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 86.46 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 86.05 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 86.01 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.94 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.78 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 85.71 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.41 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 85.25 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 85.1 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 85.01 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.89 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.35 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.64 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 83.57 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 83.55 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 83.42 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 83.21 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.19 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 81.88 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.8 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 81.74 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.48 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 81.0 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 80.4 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 80.36 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 80.29 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 80.14 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 80.05 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-82 Score=682.01 Aligned_cols=575 Identities=33% Similarity=0.568 Sum_probs=548.7
Q ss_pred cccccCchhHHHHHHHccCchHHHHHHHHHHHcCCCCC-----------------------------------hhhHhHH
Q 007871 6 AAKFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITE-----------------------------------PFTLSQL 50 (586)
Q Consensus 6 ~~~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~-----------------------------------~~~~~~l 50 (586)
.++..+++.+++.+..+|++++|.++++.|.+.|+.|| +.+++.+
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~L 228 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNAL 228 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHH
Confidence 34556667777777777777777777777666666555 4455777
Q ss_pred HHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchH
Q 007871 51 LMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130 (586)
Q Consensus 51 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 130 (586)
+. +|++. |++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.
T Consensus 229 i~-~y~k~-g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 229 IT-MYVKC-GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred HH-HHhcC-CCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 77 88999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC----C
Q 007871 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----Q 206 (586)
Q Consensus 131 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~ 206 (586)
+.+++..|.+.|+.||..+|+.|+.+|+++|++++|.++|++|..+|..+||.++.+|++.|++++|+++|++|. .
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~ 386 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997 7
Q ss_pred CChhHHHHHHHHHhhccCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 007871 207 KDAISWSIMIDGYRKKKGDISSARILFEHMP----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282 (586)
Q Consensus 207 ~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 282 (586)
||..||+.++.+| ++.|+++.|.++++.+. .++..++++|+++|++.|++++|.++|++|.++|+.+|+.++.+|
T Consensus 387 Pd~~t~~~ll~a~-~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 387 PDEITIASVLSAC-ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL 465 (857)
T ss_pred CCceeHHHHHHHH-hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 9999999999999 99999999999998775 568999999999999999999999999999999999999999999
Q ss_pred HhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH
Q 007871 283 AQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR 362 (586)
Q Consensus 283 ~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 362 (586)
++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++++.+|++.|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999986 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC
Q 007871 363 RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442 (586)
Q Consensus 363 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 442 (586)
++|+.+ .+|..+|++++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.++.++.|
T Consensus 545 ~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 545 NQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence 999999 8999999999999999999999999999999999999999999999999999999999999999996579999
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
+..+|+.++++|++.|++++|.+++++|+.+||..+|.+++.+|..+|+.+.++...+++.+++|+++..|..++++|..
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~ 703 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD 703 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHHHhh
Q 007871 523 AGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585 (586)
Q Consensus 523 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 585 (586)
.|+|++|.++.+.|++.|++++|+++|+.+++.+|.|..||++||+..+||..|..+..++++
T Consensus 704 ~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 766 (857)
T PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKA 766 (857)
T ss_pred CCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999998875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-74 Score=604.76 Aligned_cols=512 Identities=29% Similarity=0.529 Sum_probs=498.1
Q ss_pred CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCC-CCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHH
Q 007871 73 YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVN 151 (586)
Q Consensus 73 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 151 (586)
..++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34567799999999999999999999999998765 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC----CCChhHHHHHHHHHhhccCCHH
Q 007871 152 GLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDIS 227 (586)
Q Consensus 152 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~g~~~ 227 (586)
.|+.+|++.|+++.|.++|++|.++|..+||.++.+|++.|++++|+.+|++|. .||..+|+.++.++ ...|..+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~-~~~~~~~ 241 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS-AGLGSAR 241 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH-hcCCcHH
Confidence 999999999999999999999999999999999999999999999999999997 78999999999999 9999999
Q ss_pred HHHHHHHhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 007871 228 SARILFEHMP----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303 (586)
Q Consensus 228 ~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 303 (586)
.+.+++..+. .+|..++++|+++|++.|++++|.++|++|.++|+.+||.++.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999976554 679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHH
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 383 (586)
.||..||+.++.+|++.|+++.|.+++..|.+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|..+||++|.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHH
Q 007871 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 463 (586)
++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.++.++.|+..+|+.++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999988679999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 464 LNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 464 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
.+++++|+..|+..+|+.++.+|..+|+++.|..+++++.+.+|++...|..++.+|.+.|++++|.++++.|.+.|+++
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHHHhh
Q 007871 544 ETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585 (586)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 585 (586)
.++++|+.+.+.+|.|..|++.||+..+||..|..+..++++
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 603 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISE 603 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-71 Score=598.44 Aligned_cols=523 Identities=29% Similarity=0.446 Sum_probs=485.4
Q ss_pred cCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHH
Q 007871 23 KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102 (586)
Q Consensus 23 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 102 (586)
+.++.+.+++..+.+.+..+++..+|.++. +|++. |+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++
T Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~n~li~-~~~~~-g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~ 177 (857)
T PLN03077 100 RAVEEGSRVCSRALSSHPSLGVRLGNAMLS-MFVRF-GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR 177 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHH-HHHhC-CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHH
Confidence 344444555555555555556666678888 88999 9999999999999999999999999999999999999999999
Q ss_pred hHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHH
Q 007871 103 MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWN 182 (586)
Q Consensus 103 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 182 (586)
|...|+.||..||+.++++|+..+++..+.+++..|.+.|+.||..+++.|+.+|+++|+++.|.++|++|+.+|..+||
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n 257 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWN 257 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChhHHHHHHhhCC----CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhc
Q 007871 183 LVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMP----IKDLISWNSMIDGYAKI 254 (586)
Q Consensus 183 ~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~ 254 (586)
.++.+|++.|++++|+.+|++|. .||..||+.++.+| .+.|+++.|.+++..+. .||..+|+.++.+|++.
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~-~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC-ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH-HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999997 89999999999999 99999999999987765 67999999999999999
Q ss_pred CCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 007871 255 GDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334 (586)
Q Consensus 255 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (586)
|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.
T Consensus 337 g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007871 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414 (586)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 414 (586)
+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..+
T Consensus 417 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~l 495 (857)
T PLN03077 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAA 495 (857)
T ss_pred HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 599999999999
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 494 (586)
+.+|++.|+.+.+.+++..+.+ .|+.++..+++.|+++|.++|++++|.++|+++ .||..+|+.++.+|.++|+.++
T Consensus 496 L~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 496 LSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHH
Confidence 9999999999999999999998 599999999999999999999999999888888 6888888888888888888889
Q ss_pred HHHHHHHHHhcC-CCCcchHHHHHHHHHhcCCchHHHHHHHHHH-hCCCccCCCeeEEEE
Q 007871 495 AEVVVEGLVELK-ADDCGLYVLLSNIYADAGMWEHALRIRKMMR-KRKIKKETGRSVIEI 552 (586)
Q Consensus 495 a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~~~ 552 (586)
|+++|++|.+.+ .+|..+|..++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 998888888876 5677788888888888888888888888887 678888776665443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=525.11 Aligned_cols=496 Identities=16% Similarity=0.238 Sum_probs=394.1
Q ss_pred CCChhhHhHHHHHhccCCCCChHHHHHHHhccCC-----CCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccH
Q 007871 41 ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQ-----PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTY 115 (586)
Q Consensus 41 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 115 (586)
.++...|..++. .+.+. |++++|.++|++|.. ++...++.++.+|.+.|..++|+++|+.|.. ||..+|
T Consensus 367 ~~~~~~~~~~y~-~l~r~-G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAYN-RLLRD-GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCchHHHHHHH-HHHHC-cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHH
Confidence 455666666666 56666 777777777777733 3334455566667777777777777776653 677777
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC----CCChhhHHHHHHHHHhC
Q 007871 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE----IKDLVSWNLVLRGFVEC 191 (586)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~ 191 (586)
+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|+++.|.++|++|. .||..+|+.+|.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 77777777777777777777777777777777777777777777777777777777665 35677777777777777
Q ss_pred CChhHHHHHHhhCC----CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC------CCChhHHHHHHHHHHhcCCHHHHH
Q 007871 192 GEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMP------IKDLISWNSMIDGYAKIGDLVAAQ 261 (586)
Q Consensus 192 g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~ 261 (586)
|++++|..+|+.|. .||..+|+.++.+| ++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~-~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISAC-GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 77777777777775 67777777777777 77777777777777663 468888888888888888888888
Q ss_pred HHHhhCCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 007871 262 QLFNEMPE----RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337 (586)
Q Consensus 262 ~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (586)
++|+.|.+ |+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 88888874 67788888999999999999999999999888888898899999999988899999999999888888
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 007871 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMT----KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLG 413 (586)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 413 (586)
+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 88888899999999999999999988888885 58888899999999999999999999999888888899889999
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh----hc-------------------CCHHHHHHHHHhC
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS----RA-------------------GELEQALNIVESM 470 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~-------------------g~~~~A~~~~~~~ 470 (586)
++.+|++.|++++|.++++.|.+ .|+.||..+|+.++..|. ++ +..++|..+|++|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 99888888999999999998888 488888888888876533 11 2346799999998
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 007871 471 ---PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK-ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546 (586)
Q Consensus 471 ---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 546 (586)
+..||..+|..++.+++..++...+..+++.+.... +++...|+.+++.+.+. .++|..++++|.+.|+.|+..
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 678999999999988888889999988888776543 77888999999987322 358999999999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-63 Score=519.98 Aligned_cols=493 Identities=16% Similarity=0.215 Sum_probs=459.9
Q ss_pred cccCchhHHHHHHHccCchHHHHHHHHHHHcCCC-CChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHH
Q 007871 8 KFSLKNPLVSLLQISKTTTHILQILAQLTTNDLI-TEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRG 86 (586)
Q Consensus 8 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~ 86 (586)
+.+.+..+...+..+|++++|.++++.|.+.|+. ++..+++.++. .|.+. |.+++|.++|+.|..|+..+|+.+|.+
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~-~~~~~-g~~~eAl~lf~~M~~pd~~Tyn~LL~a 446 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFK-ACKKQ-RAVKEAFRFAKLIRNPTLSTFNMLMSV 446 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHH-HHHHC-CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4555666777777789999999999999999964 67777778888 89999 999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHH
Q 007871 87 YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166 (586)
Q Consensus 87 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 166 (586)
|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|
T Consensus 447 ~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA 526 (1060)
T PLN03218 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526 (1060)
T ss_pred HHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCC----CCChhhHHHHHHHHHhCCChhHHHHHHhhCC------CCChhHHHHHHHHHhhccCCHHHHHHHHHhC
Q 007871 167 RSVFEGSE----IKDLVSWNLVLRGFVECGEMGKAREVFDEMP------QKDAISWSIMIDGYRKKKGDISSARILFEHM 236 (586)
Q Consensus 167 ~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~ 236 (586)
.++|++|. .||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+| ++.|++++|.++|+.|
T Consensus 527 l~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay-~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC-ANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHH
Confidence 99999885 4799999999999999999999999999995 68999999999999 9999999999999988
Q ss_pred C----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH
Q 007871 237 P----IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE----RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308 (586)
Q Consensus 237 ~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~ 308 (586)
. .|+..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+.|+.||..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 7 45789999999999999999999999999984 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhHHHHHHHHHH
Q 007871 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT----KKNVISYNVMIAGLG 384 (586)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~ 384 (586)
+|+.++.+|++.|++++|..+|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986 489999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----c-------------------CCHHHHHHHHHHhHHhhCCC
Q 007871 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH----S-------------------GLATEGYRIFQSMKRHCGIE 441 (586)
Q Consensus 385 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~ 441 (586)
+.|++++|.+++.+|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|.+ .|+.
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~ 844 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGTL 844 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCCC
Confidence 999999999999999999999999999999876532 1 124679999999999 4999
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 442 PKLEHYSCLVDLLSRAGELEQALNIVESMP---MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
||..+|+.++.++...+..+.+..+++.|. ..|+..+|+.++.++.+. .++|..++++|.+.+
T Consensus 845 Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 845 PTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 999999999999999999999999999884 456789999999998432 368999999999987
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-59 Score=487.73 Aligned_cols=429 Identities=25% Similarity=0.402 Sum_probs=409.8
Q ss_pred cccCchhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHH
Q 007871 8 KFSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGY 87 (586)
Q Consensus 8 ~~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~ 87 (586)
+..++..++..+...+.++.+.+++..+.+.|+.||+.+++.++. +|++. |+++.|.++|++|+.||..+||.++.+|
T Consensus 122 ~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~-~y~k~-g~~~~A~~lf~~m~~~~~~t~n~li~~~ 199 (697)
T PLN03081 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL-MHVKC-GMLIDARRLFDEMPERNLASWGTIIGGL 199 (697)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH-HHhcC-CCHHHHHHHHhcCCCCCeeeHHHHHHHH
Confidence 345566777777777889999999999999999999999999999 99999 9999999999999999999999999999
Q ss_pred hcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHH
Q 007871 88 TQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCAR 167 (586)
Q Consensus 88 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 167 (586)
++.|++++|+++|++|.+.|+.||..+|+.++.+|+..|..+.+.+++..+.+.|+.||..+++.|+.+|+++|++++|.
T Consensus 200 ~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~ 279 (697)
T PLN03081 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR 279 (697)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC----CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC----CC
Q 007871 168 SVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSARILFEHMP----IK 239 (586)
Q Consensus 168 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~----~~ 239 (586)
++|++|.++|+.+||.++.+|++.|++++|+.+|++|. .||..||+.++.+| ++.|+++.|.++++.+. .+
T Consensus 280 ~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~-~~~g~~~~a~~i~~~m~~~g~~~ 358 (697)
T PLN03081 280 CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIF-SRLALLEHAKQAHAGLIRTGFPL 358 (697)
T ss_pred HHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhccchHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999996 89999999999999 99999999999988775 67
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007871 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319 (586)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 319 (586)
|..++++|+++|++.|++++|.++|++|.++|+.+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++
T Consensus 359 d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred CeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHH-cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-CCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 007871 320 VGALDLGKWIHVFMKR-SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKNVISYNVMIAGLGMNGFGEEALKCFA 397 (586)
Q Consensus 320 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 397 (586)
.|.+++|..+|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. +|+..+|++++.+|...|+.+.|..+++
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999999976 6999999999999999999999999999999997 6899999999999999999999999999
Q ss_pred HHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC
Q 007871 398 QMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442 (586)
Q Consensus 398 ~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 442 (586)
++.+ ..|+ ..+|..++..|++.|++++|.++++.|.+. |+..
T Consensus 519 ~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k 561 (697)
T PLN03081 519 KLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM 561 (697)
T ss_pred HHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence 9976 5665 579999999999999999999999999994 7754
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=305.95 Aligned_cols=519 Identities=13% Similarity=0.078 Sum_probs=337.9
Q ss_pred cCchhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHH
Q 007871 10 SLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRG 86 (586)
Q Consensus 10 ~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~ 86 (586)
.....+..++...|+++.|.+.+..+.+.+ +.++..+..+.. .+.+. |++++|.+.|+++ .+.+...|..+...
T Consensus 330 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~-~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 406 (899)
T TIGR02917 330 QARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGE-AYLAL-GDFEKAAEYLAKATELDPENAAARTQLGIS 406 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH-HHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 344556667777888888888888887764 345556666666 77777 8888888888876 33455567777778
Q ss_pred HhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHH
Q 007871 87 YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCA 166 (586)
Q Consensus 87 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 166 (586)
+...|++++|.+.|+.+.+.... +......++..+.+.|++++|..+++.+.+. .+++..++..+...+...|++++|
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A 484 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKA 484 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHH
Confidence 88888888888888887765422 2334455666677777777777777777663 344566777777777777777777
Q ss_pred HHHhccCC---CCChhhHHHHHHHHHhCCChhHHHHHHhhCC---CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC---
Q 007871 167 RSVFEGSE---IKDLVSWNLVLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISSARILFEHMP--- 237 (586)
Q Consensus 167 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~--- 237 (586)
.+.|+++. +.+...+..+...+...|++++|...|+.+. +.+...+..+...+ ...|+.++|...++++.
T Consensus 485 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~ 563 (899)
T TIGR02917 485 REAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY-LRTGNEEEAVAWLEKAAELN 563 (899)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhC
Confidence 77776543 2345566666777777777777777777765 23444555555555 66777777777766653
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007871 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314 (586)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 314 (586)
+.+...+..++..+.+.|++++|..+++.+.+ .+...|..+..++...|++++|...|+++.+.. +.+...+..+.
T Consensus 564 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 642 (899)
T TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLA 642 (899)
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 23455566666777777777777777766653 345666666777777777777777777766543 33455566666
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHH
Q 007871 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 391 (586)
.++...|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+ .+...+..+...+...|++++
T Consensus 643 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 643 DAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHH
Confidence 66666777777777776666553 33455666666666666777777666666652 344555666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM- 470 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 470 (586)
|...|+++... .|+..++..+..++...|++++|.+.++.+.+ ..+.+...+..++..|...|++++|.+.|+++
T Consensus 722 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 797 (899)
T TIGR02917 722 AIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVV 797 (899)
T ss_pred HHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 66666666663 34445555666666666666666666666666 34455666666666666666666666666665
Q ss_pred -CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 471 -PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 471 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
..++++..+..+...+...|+ .+|+.+++++.+..|+++..+..++.++...|++++|..+++++.+.+.
T Consensus 798 ~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 798 KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 122345556666666666666 5566666666666666666666666666666666666666666665543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=304.21 Aligned_cols=513 Identities=14% Similarity=0.022 Sum_probs=357.7
Q ss_pred hHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcC
Q 007871 14 PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQS 90 (586)
Q Consensus 14 ~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~ 90 (586)
.+...+...|+++.|...+....+.. +.++..+..+.. .+.+. |++++|...++.+ .+.+...+..+...+.+.
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~-~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLAS-IQLRL-GRVDEAIATLSPALGLDPDDPAALSLLGEAYLAL 376 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH-HHHHC-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 33445556677778877777777654 233344444444 66677 7888888777766 334555677777777777
Q ss_pred CCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHh
Q 007871 91 SNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVF 170 (586)
Q Consensus 91 ~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 170 (586)
|++++|.++|+++.+.. +.+...+..+...+...|++++|.+.+..+.+... ........++..+.+.|++++|.+++
T Consensus 377 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 377 GDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 88888888887776653 22444566666777777788888877777776542 22334556677777788888887777
Q ss_pred ccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC--CC-ChhHHHHHHHHHhhccCCHHHHHHHHHhCC---CCCh
Q 007871 171 EGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP--QK-DAISWSIMIDGYRKKKGDISSARILFEHMP---IKDL 241 (586)
Q Consensus 171 ~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~ 241 (586)
+.+.. .+..+|..+...+...|++++|...|+++. .| +...+..+...+ ...|++++|.+.++.+. +.+.
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~~~~~~~~~ 533 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARID-IQEGNPDDAIQRFEKVLTIDPKNL 533 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCcCcH
Confidence 76543 355677777777778888888888877765 33 334444555555 67778888887777664 3356
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007871 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318 (586)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 318 (586)
.++..+...+.+.|+.++|...++++.+ .+...+..++..+...|++++|..+++.+.+.. +.+...+..+..++.
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 612 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQL 612 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 6777777777778888888877777653 345566677777777888888888887777643 556667777777777
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 007871 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKC 395 (586)
Q Consensus 319 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 395 (586)
..|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+ .+..++..++..+...|++++|..+
T Consensus 613 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 691 (899)
T TIGR02917 613 AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7788888888877777654 33555667777777777888888887776653 3456777777777778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCC
Q 007871 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMK 473 (586)
Q Consensus 396 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 473 (586)
++.+...+ +++...+..+...+...|++++|...++.+... .|+..++..++.++.+.|++++|.+.++++ ..+
T Consensus 692 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 767 (899)
T TIGR02917 692 AKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP 767 (899)
T ss_pred HHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 87777653 445566777777777778888888888777662 344466667777777888888887777766 223
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 474 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+...+..+...|...|++++|...|+++.+..|+++.++..+++++...|+ .+|..+++++.+.
T Consensus 768 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 768 NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 4566677777777777888888888888887778777778888888888877 7777777777664
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-24 Score=239.82 Aligned_cols=515 Identities=14% Similarity=0.042 Sum_probs=362.3
Q ss_pred hHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcC
Q 007871 14 PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQS 90 (586)
Q Consensus 14 ~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~ 90 (586)
.+..++...|+.++|.+.++.+.+.+ +|+............... |+.++|++.|+++ .+.+...+..+...+...
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~-g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~ 194 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLP-AQRPEAINQLQRLNADYPGNTGLRNTLALLLFSS 194 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCC-ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcc
Confidence 34557788899999999999999764 333332222333133345 8999999999998 344566788889999999
Q ss_pred CCchhHHHHHHHhHhCCCC--------------------------------CCcccH---------------------HH
Q 007871 91 SNPQKALSFYVNMKRKGLL--------------------------------VDNYTY---------------------PF 117 (586)
Q Consensus 91 ~~~~~A~~~~~~m~~~~~~--------------------------------~~~~~~---------------------~~ 117 (586)
|+.++|++.++++.+.... |+...+ ..
T Consensus 195 g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~ 274 (1157)
T PRK11447 195 GRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARA 274 (1157)
T ss_pred CCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHH
Confidence 9999999999988653210 110000 01
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--CC---hhhHH----------
Q 007871 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KD---LVSWN---------- 182 (586)
Q Consensus 118 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~---------- 182 (586)
....+...|++++|...|++.++.. +.+...+..|...|.+.|++++|...|++... |+ ...|.
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 1223345567777777777776643 23556666777777777777777777765543 11 11111
Q ss_pred --HHHHHHHhCCChhHHHHHHhhCC--CCC-hhHHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhc
Q 007871 183 --LVLRGFVECGEMGKAREVFDEMP--QKD-AISWSIMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKI 254 (586)
Q Consensus 183 --~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 254 (586)
.....+.+.|++++|+..|+++. .|+ ...+..+...+ ...|++++|.+.|++.. +.+...+..+...|. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~-~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVA-MARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 12334566777777777777766 333 33444444455 67777777777777665 234455555555553 3
Q ss_pred CCHHHHHHHHhhCCCCC------------hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007871 255 GDLVAAQQLFNEMPERN------------VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322 (586)
Q Consensus 255 g~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 322 (586)
++.++|...++.+.... ...+..+...+...|++++|+..|++.++.. +-+...+..+...+...|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 46677777776654311 1234445667778899999999999998864 3356677788888999999
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----CH---------hHHHHHHHHHHhcCCh
Q 007871 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK----NV---------ISYNVMIAGLGMNGFG 389 (586)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~---------~~~~~l~~~~~~~~~~ 389 (586)
+++|...++.+.+.. +.+...+..+...+...++.++|...++.+... +. ..+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999988764 334445555556677889999999999987632 11 1123456678889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 007871 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469 (586)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 469 (586)
++|..+++. .+++...+..+...+.+.|++++|+..|+.+.+ ..+.+...+..++.+|...|++++|++.++.
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999872 355666778888899999999999999999998 4566788999999999999999999999998
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHHH-hCC
Q 007871 470 MP-MKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC------GLYVLLSNIYADAGMWEHALRIRKMMR-KRK 540 (586)
Q Consensus 470 ~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~ 540 (586)
.. ..| +...+..+..++...|++++|.++++++.+..|+++ .++..++.++...|++++|.+.|++.. ..|
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 73 334 456667778888999999999999999999876554 366777999999999999999999975 344
Q ss_pred Cc
Q 007871 541 IK 542 (586)
Q Consensus 541 ~~ 542 (586)
+.
T Consensus 743 ~~ 744 (1157)
T PRK11447 743 IT 744 (1157)
T ss_pred CC
Confidence 54
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-24 Score=235.93 Aligned_cols=507 Identities=13% Similarity=0.060 Sum_probs=264.6
Q ss_pred HHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc--CCCCcchH---------------
Q 007871 18 LLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMH--------------- 80 (586)
Q Consensus 18 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~--------------- 80 (586)
+-...++.+.|.+.+..+.... +.++..+..... ++.+. |+.++|.+.+++. ..|+...+
T Consensus 37 ~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~-~~l~~-g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 37 LGEATHREDLVRQSLYRLELID-PNNPDVIAARFR-LLLRQ-GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHH-HHHhC-CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchh
Confidence 3445578999999999988775 345666677777 78888 9999999999988 23433222
Q ss_pred --HHHHHHHhcCCCchhHHHHHHHhHhCCCCCCccc-HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 007871 81 --NTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYT-YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMY 157 (586)
Q Consensus 81 --~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 157 (586)
..+.+.+...|++++|++.|+.+.+.+ +|+... ...........++.++|...++++.+.. +.+...+..+...+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 223446788999999999999998753 333221 1111222234689999999999999864 44566788899999
Q ss_pred HhcCChhHHHHHhccCCCCCh------hhH-----------------HHHHHHHHhCCChhHHHHHHhhCC--CCChhHH
Q 007871 158 SKCGHMGCARSVFEGSEIKDL------VSW-----------------NLVLRGFVECGEMGKAREVFDEMP--QKDAISW 212 (586)
Q Consensus 158 ~~~g~~~~a~~~~~~~~~~~~------~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 212 (586)
...|+.++|...++++..... ..| ...+..+-.....+.|...+.... .+|....
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 999999999999987643210 001 100000001111222222222221 0111100
Q ss_pred H-HHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh---hHHH-------
Q 007871 213 S-IMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNV---FSWS------- 276 (586)
Q Consensus 213 ~-~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~------- 276 (586)
. .....+ ...|++++|+..|++.. +.+..++..+...+.+.|++++|+..|++..+ |+. ..|.
T Consensus 272 ~~~~G~~~-~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 272 ARAQGLAA-VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 0 111222 44555555555555443 22445555555555555555555555555443 211 1111
Q ss_pred -----HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHH-----
Q 007871 277 -----IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT----- 346 (586)
Q Consensus 277 -----~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----- 346 (586)
.....+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+.+.+... .+...+.
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 11223445555555555555555542 22334444455555555555555555555554431 1222222
Q ss_pred -------------------------------------HHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhc
Q 007871 347 -------------------------------------ALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNVMIAGLGMN 386 (586)
Q Consensus 347 -------------------------------------~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~ 386 (586)
.+...+...|++++|.+.|++..+ | +...+..+...|.+.
T Consensus 429 ~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~ 508 (1157)
T PRK11447 429 YRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQA 508 (1157)
T ss_pred HHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 233445556666666666665542 2 344555666666666
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh---------HHHHHHHHHHhh
Q 007871 387 GFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL---------EHYSCLVDLLSR 456 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~ 456 (586)
|++++|...++++.+. .| +...+..+...+...|++++|...++.+... ...++. ..+..++..+..
T Consensus 509 G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 509 GQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred CCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 6666666666666652 23 3333333444455566666666666654221 000000 001112223333
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 457 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
.|+.++|..+++.- +++...+..+...+...|++++|+..|+++++..|+++..+..++.+|...|++++|.+.++..
T Consensus 586 ~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 586 SGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred CCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444444321 1122333334444444455555555555555545555544544555554555555555444444
Q ss_pred H
Q 007871 537 R 537 (586)
Q Consensus 537 ~ 537 (586)
.
T Consensus 664 l 664 (1157)
T PRK11447 664 P 664 (1157)
T ss_pred h
Confidence 3
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-21 Score=205.20 Aligned_cols=510 Identities=11% Similarity=0.043 Sum_probs=313.3
Q ss_pred ccCchhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHH
Q 007871 9 FSLKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIR 85 (586)
Q Consensus 9 ~~~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~ 85 (586)
..++..|.+++...|+.+.|+...+..++.+ |+...+..++. .+ +++++|...++++ .+.+...+..+..
T Consensus 78 ~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La-~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~ 150 (987)
T PRK09782 78 IPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLA-AI----PVEVKSVTTVEELLAQQKACDAVPTLRCR 150 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHH-Hh----ccChhHHHHHHHHHHhCCCChhHHHHHHH
Confidence 4444555555566666666666666665542 34444433333 22 3455555666655 2223333333333
Q ss_pred H--------HhcCCCchhHHHHHHHhHhCCCCCCcccHHHH-HHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007871 86 G--------YTQSSNPQKALSFYVNMKRKGLLVDNYTYPFV-LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156 (586)
Q Consensus 86 ~--------~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (586)
. |.+. ++|.+.++ .......|+..+.... .+.|...++++.+..++.++.+.+. .+......|..+
T Consensus 151 ~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~a 225 (987)
T PRK09782 151 SEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDV 225 (987)
T ss_pred HhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3 3333 44444443 2222223334433444 6777888888888888888888763 344456666667
Q ss_pred HHh-cCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC-----CCChhHHHH----------------
Q 007871 157 YSK-CGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-----QKDAISWSI---------------- 214 (586)
Q Consensus 157 ~~~-~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~---------------- 214 (586)
|.. .++ +.+..+++.....++..+..+...|.+.|+.++|..+++++. .|+..++..
T Consensus 226 y~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 226 LLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred HHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 777 366 777777765545678888899999999999999999998887 232111111
Q ss_pred --------------HHHHHhhccCCHHHHHHHHHhCC--------------------------------CCChhHHHHHH
Q 007871 215 --------------MIDGYRKKKGDISSARILFEHMP--------------------------------IKDLISWNSMI 248 (586)
Q Consensus 215 --------------ll~~~~~~~g~~~~a~~~~~~~~--------------------------------~~~~~~~~~l~ 248 (586)
++..+ .+.++++.+.++.+.-. +.+......+.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~ 383 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVL-LKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLT 383 (987)
T ss_pred hhhhHHHHHHHHHHHHHHH-HhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 12333 45555555555522111 01344444555
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--C----ChhHHHHHHHHHHhCCC---chHHHHH----------------------HHH
Q 007871 249 DGYAKIGDLVAAQQLFNEMPE--R----NVFSWSIMIDGYAQHGN---PKEALYL----------------------FRE 297 (586)
Q Consensus 249 ~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~---~~~A~~~----------------------~~~ 297 (586)
-...+.|+.++|.++|..... + +......++..|.+.+. ..++..+ ...
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 566778888888888887764 1 22233455666665544 2233222 111
Q ss_pred HHHC-CC-CC--CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C
Q 007871 298 MLCQ-GV-RP--DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K 371 (586)
Q Consensus 298 m~~~-g~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~ 371 (586)
.... +. ++ +...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|+.+.. +
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p 540 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM 540 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 1111 11 23 45566666666555 67777887776666553 4443333444555678888888888876653 4
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 007871 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 450 (586)
+...+..+..++.+.|++++|...+++..+.. |+. ..+..+...+...|++++|...+++..+ ..|+...+..+
T Consensus 541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~L 615 (987)
T PRK09782 541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVAR 615 (987)
T ss_pred CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHH
Confidence 44556666677778888888888888877742 333 3333333444556888888888888776 23567777788
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 007871 451 VDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 528 (586)
+.++.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++++..|+++.++..++.++...|++++
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888888776 3344 456666677778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhCC
Q 007871 529 ALRIRKMMRKRK 540 (586)
Q Consensus 529 A~~~~~~m~~~~ 540 (586)
|...+++..+..
T Consensus 696 A~~~l~~Al~l~ 707 (987)
T PRK09782 696 TQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHhcC
Confidence 888888876544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-21 Score=201.09 Aligned_cols=542 Identities=11% Similarity=-0.028 Sum_probs=379.1
Q ss_pred ccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc--CCCCcchHHHHHHHHhcCCCchhHHHH
Q 007871 22 SKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMHNTMIRGYTQSSNPQKALSF 99 (586)
Q Consensus 22 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~ 99 (586)
.|+.++|...++..++..+.- +.++..+.+ +|... |++++|+..+++. ..|+-..|..++..+ +++.+|.++
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~-~yl~~-g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDN-IPLTLYLAE-AYRHF-GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCC-HHHHHHHHH-HHHHC-CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 389999999999999886333 566666666 89999 9999999999998 344444444444333 889999999
Q ss_pred HHHhHhCCCCCCcccHHHHHHHH-----hccCCchHHHHHHHHHHHhCCCCchhHHHHH-HHHHHhcCChhHHHHHhccC
Q 007871 100 YVNMKRKGLLVDNYTYPFVLKAC-----GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL-IGMYSKCGHMGCARSVFEGS 173 (586)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~ 173 (586)
++++.+.... +...+..+.... ......+++.+.++ .......|+..+.... ...|...|++++|.+++.++
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999987422 344554444440 11233466666666 4443444456656655 89999999999999999887
Q ss_pred CCC---ChhhHHHHHHHHHh-CCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCC-----CChhH-
Q 007871 174 EIK---DLVSWNLVLRGFVE-CGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI-----KDLIS- 243 (586)
Q Consensus 174 ~~~---~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~-----~~~~~- 243 (586)
.+. +......+...|.. .++ +++..+++...+.+...+..+...+ .+.|+.++|.++++.+.+ |+..+
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~y-i~~G~~~~A~~~L~~~~~~~~~~~~~~~~ 286 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATAL-AYRGEKARLQHYLIENKPLFTTDAQEKSW 286 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHH-HHCCCHHHHHHHHHhCcccccCCCccHHH
Confidence 653 44556677778887 366 8888887764466778888888988 999999999999988763 11111
Q ss_pred -----------------------------HHHHHHHHHhcCCHHHHHHHHhhCCC-------------------------
Q 007871 244 -----------------------------WNSMIDGYAKIGDLVAAQQLFNEMPE------------------------- 269 (586)
Q Consensus 244 -----------------------------~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------- 269 (586)
...++..+.+.++++.+.++..--..
T Consensus 287 ~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 366 (987)
T PRK09782 287 LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLAR 366 (987)
T ss_pred HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHH
Confidence 12235667778888877766442211
Q ss_pred ------C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHhccCC------------------
Q 007871 270 ------R-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQ-G-VRPDVISVMGAISACAQVGA------------------ 322 (586)
Q Consensus 270 ------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g-~~~~~~~~~~l~~~~~~~~~------------------ 322 (586)
| +......+.-...+.|+.++|.++|+..... + -.++.....-++..+.+.+.
T Consensus 367 ~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 446 (987)
T PRK09782 367 LLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAE 446 (987)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccch
Confidence 0 2222333444567889999999999998762 1 22344444466666666544
Q ss_pred -------hhHHHHHHHHHHHc-CC-CC--chhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCCh
Q 007871 323 -------LDLGKWIHVFMKRS-RI-TM--DMIVQTALIDMYMKCGSLDEARRIFYSMT--KKNVISYNVMIAGLGMNGFG 389 (586)
Q Consensus 323 -------~~~a~~~~~~~~~~-~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 389 (586)
...+...+...... +. ++ +...+..+..++.. ++.++|...+.... .|+......+...+...|++
T Consensus 447 ~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 447 QRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred hHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCH
Confidence 22222233333222 22 33 56778888888877 78888999777665 35544333445555789999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 007871 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469 (586)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 469 (586)
++|...|+++.. ..|+...+..+..++...|+.++|...++...+. .+.+...+..+.......|++++|...+++
T Consensus 526 eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~ 601 (987)
T PRK09782 526 ATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTR 601 (987)
T ss_pred HHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999866 3566666777788889999999999999999882 344444454555555667999999999998
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCee
Q 007871 470 M-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRS 548 (586)
Q Consensus 470 ~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 548 (586)
. ...|+...+..+..++.+.|++++|+..++++++.+|+++..+..++.++...|++++|+..+++..+.... ....
T Consensus 602 AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~--~~~a 679 (987)
T PRK09782 602 SLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD--DPAL 679 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHH
Confidence 7 566888899999999999999999999999999999999999999999999999999999999999875432 2111
Q ss_pred EEEE----------CCeEeEEecCCCCCCChhHHHHHHHHHH
Q 007871 549 VIEI----------DGNIKEFVSGEIFDVQSEELELVIQSFV 580 (586)
Q Consensus 549 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 580 (586)
+..+ ......|.......|+.+.|....-++.
T Consensus 680 ~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 680 IRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 1111 1123333333356788877775554443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=189.99 Aligned_cols=438 Identities=13% Similarity=0.079 Sum_probs=356.7
Q ss_pred HHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 007871 82 TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG 161 (586)
Q Consensus 82 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 161 (586)
.|..-..+.|++.+|++.-...-..+ +.+......+-..+....+.+....--....+. .+--..+|+.+...+-..|
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhc
Confidence 44555668899999998776654442 223334444445555556666554443333332 2334568888999999999
Q ss_pred ChhHHHHHhccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHHHHHHHhC
Q 007871 162 HMGCARSVFEGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHM 236 (586)
Q Consensus 162 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~ 236 (586)
+++.|+..++.+.+ ..+..|..+..++...|+.+.|...|.... .|+.....+-+..+....|++++|...+-+.
T Consensus 131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999987654 366889999999999999999999998887 6766666665555547789999999998776
Q ss_pred CCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH
Q 007871 237 PIK---DLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310 (586)
Q Consensus 237 ~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 310 (586)
... =..+|+.|...+..+|+...|+..|++... |+ ..+|..|...|...+.+++|+..|.+..... +.....+
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~ 289 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAH 289 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhhc
Confidence 633 346799999999999999999999999886 43 4689999999999999999999999988752 3355678
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcC
Q 007871 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNG 387 (586)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 387 (586)
..+...|...|.+|.|...|++.++.. +.-...|+.|..++...|++.+|...+.+... ....+.+.|...|...|
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~ 368 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQG 368 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence 888888999999999999999998875 22356899999999999999999999998773 45678899999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHH
Q 007871 388 FGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK-LEHYSCLVDLLSRAGELEQALN 465 (586)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 465 (586)
..++|..+|....+ +.|.- ..++.|...|-++|++++|+..+++..+ +.|+ ...|+.++..|...|+.+.|++
T Consensus 369 ~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 369 KIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred cchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 99999999999988 67765 5789999999999999999999999977 5665 6899999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 007871 466 IVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528 (586)
Q Consensus 466 ~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 528 (586)
.+.+. .+.|. ....+.|...|...|+..+|+..|+.++++.|+.+.++..++.++.--.+|.+
T Consensus 444 ~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 444 CYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 99887 56664 56778899999999999999999999999999999999999988766665554
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-22 Score=190.25 Aligned_cols=416 Identities=13% Similarity=0.066 Sum_probs=337.9
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhhHHHHHHHHHhCCC
Q 007871 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE---IKDLVSWNLVLRGFVECGE 193 (586)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~ 193 (586)
.|..-..+.|++.+|++.....-... +.+....-.+-..+....+++....--.... .....+|..+...+-..|+
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 34444567789999988766554432 2222233333344555555555433322222 2256789999999999999
Q ss_pred hhHHHHHHhhCC--CC-ChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhhC
Q 007871 194 MGKAREVFDEMP--QK-DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLI---SWNSMIDGYAKIGDLVAAQQLFNEM 267 (586)
Q Consensus 194 ~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 267 (586)
+++|+.+++.+. +| ....|..+..++ ...|+.+.|...|.....-++. ..+.+...+...|++++|...+.+.
T Consensus 132 ~~~al~~y~~aiel~p~fida~inla~al-~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 132 LQDALALYRAAIELKPKFIDAYINLAAAL-VTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHHHHhcCchhhHHHhhHHHHH-HhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 999999999998 44 456777788888 9999999999998887754443 3445566677789999999999887
Q ss_pred CC--CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhH
Q 007871 268 PE--RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344 (586)
Q Consensus 268 ~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 344 (586)
.+ |. ..+|+.|...+-..|+...|+..|++.++.. +.-...|-.+...|...+.++.|...|.+..... +....+
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a 288 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVA 288 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchhh
Confidence 75 43 4679999999999999999999999999763 2234578888999999999999999998887664 345667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSH 420 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 420 (586)
+..+...|-..|.++-|+..+++..+ | -...|+.|..++...|++.+|...|.+... +.|+. ...+.|...+..
T Consensus 289 ~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 289 HGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYRE 366 (966)
T ss_pred ccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHH
Confidence 88888899999999999999998874 4 357899999999999999999999999988 55654 688999999999
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 498 (586)
.|.+++|..+|..... -.+--...++.|...|-.+|++++|+..+++. .++|+ ...++.+...|-..|+.+.|.+.
T Consensus 367 ~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~ 444 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQC 444 (966)
T ss_pred hccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHH
Confidence 9999999999999877 34445678999999999999999999999887 67886 57899999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 499 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
+.+++..+|.-+.++..|+.+|..+|+..+|++-|+...+..
T Consensus 445 y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 445 YTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999988754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-20 Score=189.80 Aligned_cols=415 Identities=11% Similarity=-0.022 Sum_probs=277.7
Q ss_pred HHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhhHHHHHHHHHhCC
Q 007871 116 PFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI---KDLVSWNLVLRGFVECG 192 (586)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g 192 (586)
......+...|+++.|...|++.++. .|+...|..+..+|.+.|++++|++.++.... .+..+|..+..+|...|
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 34445556667777777777766653 35566666677777777777777777665442 24556666777777777
Q ss_pred ChhHHHHHHhhCC---CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007871 193 EMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269 (586)
Q Consensus 193 ~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 269 (586)
++++|+..|.... ..+......++... ........+...++.-. ++...+..+...+ ..........-+....+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERL-LKKFAESKAKEILETKP-ENLPSVTFVGNYL-QSFRPKPRPAGLEDSNE 285 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHH-HHHHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHccCCcchhhhhcccc
Confidence 7777776665443 11111111122211 11111223333333222 2222222222221 11111111111221111
Q ss_pred CC---hhHHHHHHHH---HHhCCCchHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc
Q 007871 270 RN---VFSWSIMIDG---YAQHGNPKEALYLFREMLCQG-VRP-DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341 (586)
Q Consensus 270 ~~---~~~~~~l~~~---~~~~~~~~~A~~~~~~m~~~g-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (586)
-+ ...+..+... ....+++++|...|++..+.+ ..| ....+..+...+...|++++|...++...+.. +..
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 11 1111111111 123468899999999998765 223 44567777778888999999999999988774 234
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIA 417 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~ 417 (586)
...|..+..++...|++++|...|+.+.+ .+...|..+...+...|++++|+..|++.... .| +...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHH
Confidence 56778888889999999999999987763 46778899999999999999999999999884 45 45677888889
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH--------HHHHHHHHHHHh
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNL--------ALWGTLLLACRN 488 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~~~l~~~~~~ 488 (586)
+.+.|++++|...++...+ ..+.+...+..++.++...|++++|++.|++. ...|+. ..++.....+..
T Consensus 443 ~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999988 45667889999999999999999999999886 333321 111222223445
Q ss_pred cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 489 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
.|++++|+.+++++++.+|++..++..+++++.+.|++++|..+|++..+..
T Consensus 521 ~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 521 KQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999987643
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.2e-20 Score=180.60 Aligned_cols=294 Identities=12% Similarity=0.084 Sum_probs=217.9
Q ss_pred HHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCCh
Q 007871 250 GYAKIGDLVAAQQLFNEMPE--R-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD---VISVMGAISACAQVGAL 323 (586)
Q Consensus 250 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~~~~ 323 (586)
.+...|++++|...|.++.+ | +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 34556677777777777664 2 345666677777777777777777777766432221 23456666777777777
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC------HhHHHHHHHHHHhcCChHHHHHH
Q 007871 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--KN------VISYNVMIAGLGMNGFGEEALKC 395 (586)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~A~~~ 395 (586)
+.|..+|+.+.+.. +.+..++..++.++...|++++|.+.++.+.+ |+ ...+..+...+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777776653 34556677777777777888888777777653 11 12345677778889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 007871 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP 474 (586)
Q Consensus 396 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 474 (586)
++++.+.. +.+...+..+...+...|++++|.++++++... +......++..++.+|...|++++|...++++ ...|
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99998742 233567778888999999999999999999873 22222466788999999999999999999987 4567
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh---cCCchHHHHHHHHHHhCCCccCCCe
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD---AGMWEHALRIRKMMRKRKIKKETGR 547 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 547 (586)
+...+..++..+.+.|++++|..+++++.+..|+++... .+...+.. .|+.+++..++++|.++++.++|.+
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 777778888889999999999999999999999887444 44444443 5699999999999999999999974
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-18 Score=179.16 Aligned_cols=325 Identities=10% Similarity=-0.041 Sum_probs=252.6
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCC--CCChh-HHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHH
Q 007871 179 VSWNLVLRGFVECGEMGKAREVFDEMP--QKDAI-SWSIMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYA 252 (586)
Q Consensus 179 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~-~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 252 (586)
.....++..+.+.|++++|+.+++... .|+.. ....+.... ...|+++.|...++++. +.+...+..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~-l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISP-LASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhH-hhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345566777888889999888888877 44443 333333344 67889999999888776 346778888888999
Q ss_pred hcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 007871 253 KIGDLVAAQQLFNEMPE--R-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329 (586)
Q Consensus 253 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (586)
..|++++|...+++..+ | +...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 99999999999998875 3 467788888999999999999999998876532 233333333 347788999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHH----HHHHHHHHHHC
Q 007871 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEE----ALKCFAQMETE 402 (586)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----A~~~~~~m~~~ 402 (586)
++.+.+....++......+..++...|++++|...++.+.. .+...+..+...+...|++++ |...+++...
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~- 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ- 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-
Confidence 99887775444445555667788899999999999988763 456778888999999999986 7999999888
Q ss_pred CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH-H
Q 007871 403 GIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLAL-W 479 (586)
Q Consensus 403 g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~ 479 (586)
..|+ ...+..+...+...|++++|...+++... ..+.+...+..++.+|...|++++|...++++ ...|+... +
T Consensus 279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 4454 56888889999999999999999999888 34556777888999999999999999999887 34565433 3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
..+..++...|++++|...|+++.+..|.+.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 3455668899999999999999999988865
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-17 Score=175.34 Aligned_cols=392 Identities=10% Similarity=-0.026 Sum_probs=190.5
Q ss_pred HHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChh
Q 007871 85 RGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMG 164 (586)
Q Consensus 85 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 164 (586)
......|+.++|++++.+..... +.+...+..+...+...|++++|.+++++.++.. +.+...+..++..+...|+++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence 33344455555555555444311 1222234444444445555555555555544421 122333344444444444444
Q ss_pred HHHHHhccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCC
Q 007871 165 CARSVFEGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK 239 (586)
Q Consensus 165 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~ 239 (586)
+|...+++... .+.. +..+...+...|+.++|+..++++. .|+
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~------------------------------- 148 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ------------------------------- 148 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------------------------
Confidence 44444443321 1223 4444444444444444444444443 222
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCh------hHHHHHHHHHH-----hCCCc---hHHHHHHHHHHHC-CC
Q 007871 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPE-RNV------FSWSIMIDGYA-----QHGNP---KEALYLFREMLCQ-GV 303 (586)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~m~~~-g~ 303 (586)
+...+..+...+...|..+.|+..++.... |+. .....++.... ..+++ ++|+..++.+.+. ..
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~ 228 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHD 228 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhccc
Confidence 333344444445555555555555555443 110 01111111111 11223 5666667766643 11
Q ss_pred CCCHH-HHH----HHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----
Q 007871 304 RPDVI-SVM----GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--KN---- 372 (586)
Q Consensus 304 ~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---- 372 (586)
.|+.. .+. ..+.++...|+.++|...|+.+.+.+.+........+..+|...|++++|...|+.+.+ |.
T Consensus 229 ~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 229 NPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 22211 111 11223345566777777777766654221111122245566666777777776666542 11
Q ss_pred -HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007871 373 -VISYNVMIAGLGMNGFGEEALKCFAQMETEG-----------IPKDD---LIFLGVLIACSHSGLATEGYRIFQSMKRH 437 (586)
Q Consensus 373 -~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-----------~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 437 (586)
......+..++...|++++|..+++++.... ..|+. ..+..+...+...|+.++|+++++++..
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~- 387 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY- 387 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 1234445556666777777777777666531 01221 2334455556666666666666666665
Q ss_pred hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcch
Q 007871 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512 (586)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 512 (586)
..|.+...+..++..+...|++++|++.+++. ...|+ ...+...+..+...|++++|+..++++++..|+++.+
T Consensus 388 -~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 388 -NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred -hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 34455666666666666666666666666655 23343 4444445555666666666666666666666666633
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-18 Score=174.60 Aligned_cols=422 Identities=12% Similarity=0.003 Sum_probs=294.6
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 007871 80 HNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSK 159 (586)
Q Consensus 80 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 159 (586)
+......+.+.|++++|++.|++..+. .|+...|..+..++...|++++|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 456677888999999999999998875 5677788889999999999999999999988854 3345688889999999
Q ss_pred cCChhHHHHHhccCCCC---ChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhC
Q 007871 160 CGHMGCARSVFEGSEIK---DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHM 236 (586)
Q Consensus 160 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~ 236 (586)
.|++++|...|...... +......++..+........+...++.- .++...+. .+..+ ......+....-++..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVT-FVGNY-LQSFRPKPRPAGLEDS 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHH-HHHHH-HHHccCCcchhhhhcc
Confidence 99999998877544321 1111112222222211122333333322 12211221 12222 1111111111111211
Q ss_pred CCCCh---hHHHHHHHH---HHhcCCHHHHHHHHhhCCC-----C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCC
Q 007871 237 PIKDL---ISWNSMIDG---YAKIGDLVAAQQLFNEMPE-----R-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR 304 (586)
Q Consensus 237 ~~~~~---~~~~~l~~~---~~~~g~~~~A~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 304 (586)
...+. ..+..+... ....+++++|.+.|+...+ | ....|+.+...+...|++++|+..+++..+.. +
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P 362 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-P 362 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Confidence 11111 111111111 1234788999999988764 2 34568888888999999999999999998763 3
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHH
Q 007871 305 PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIA 381 (586)
Q Consensus 305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~ 381 (586)
-....|..+..++...|++++|...++.+.+.. +.+..++..+..++...|++++|...|++..+ .+...+..+..
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 345678888888999999999999999998875 44677888899999999999999999998863 35677888889
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh------HHHHHHHHHHh
Q 007871 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL------EHYSCLVDLLS 455 (586)
Q Consensus 382 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~~l~~~~~ 455 (586)
.+.+.|++++|+..|++.... .+.+...++.+..++...|++++|...|+..... ....+. ..++.....+.
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL-EKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCccccccccHHHHHHHHHHHHH
Confidence 999999999999999998874 2334678888999999999999999999998772 211111 11222223344
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 456 RAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
..|++++|.+++++. ...| +...+..+...+...|++++|+.+|+++.++.+....
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 579999999999886 4455 4456788889999999999999999999998766443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-18 Score=174.49 Aligned_cols=324 Identities=10% Similarity=-0.028 Sum_probs=266.9
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhC
Q 007871 212 WSIMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--R-NVFSWSIMIDGYAQH 285 (586)
Q Consensus 212 ~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~ 285 (586)
...++..+ .+.|+.+.|..+++... +.+...+..++.+....|++++|...|+++.+ | +...+..+...+...
T Consensus 45 ~~~~~~~~-~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIAC-LRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHH-HhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 33445555 78999999999988775 44667777888888899999999999999975 3 567788889999999
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007871 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365 (586)
Q Consensus 286 ~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 365 (586)
|++++|...++++.+.. +.+...+..+..++...|+.++|...++.+......+ ...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999999863 4456678888899999999999999999887765433 3333333 3478899999999999
Q ss_pred hccCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHH----HHHHHHHhHHh
Q 007871 366 YSMTKK----NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE----GYRIFQSMKRH 437 (586)
Q Consensus 366 ~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~ 437 (586)
+.+.+. +...+..+...+...|++++|+..++++.... +.+...+..+...+...|++++ |...++++.+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~- 278 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ- 278 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-
Confidence 987642 23344556778899999999999999999853 3345678888999999999986 8999999988
Q ss_pred hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
..+.+...+..++..+...|++++|...+++. ...| +...+..+..++...|++++|+..++++.+.+|.++..+..
T Consensus 279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 34567889999999999999999999999987 3445 46667778888999999999999999999999999877777
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 516 LSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 516 l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
++.++...|++++|...|++..+....
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 889999999999999999998776543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-18 Score=178.23 Aligned_cols=384 Identities=9% Similarity=-0.006 Sum_probs=259.3
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCC-hhHHHHHHHHHhhcc
Q 007871 150 VNGLIGMYSKCGHMGCARSVFEGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKD-AISWSIMIDGYRKKK 223 (586)
Q Consensus 150 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~~ 223 (586)
..-.+.+....|+.++|++++.+... .+...+..+...+...|++++|..++++.. .|+ ...+..+...+ ...
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l-~~~ 96 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTL-ADA 96 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHC
Confidence 33344444455555555555544332 122334555555555555555555555543 232 22233333333 555
Q ss_pred CCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHH
Q 007871 224 GDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--R-NVFSWSIMIDGYAQHGNPKEALYLFRE 297 (586)
Q Consensus 224 g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 297 (586)
|+.++|...+++.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+..++...+..+.|+..++.
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 66666666655543 23555 77777788889999999999998875 3 456667778888889999999998886
Q ss_pred HHHCCCCCCH------HHHHHHHHHHh-----ccCCh---hHHHHHHHHHHHc-CCCCchh-HHH----HHHHHHHhcCC
Q 007871 298 MLCQGVRPDV------ISVMGAISACA-----QVGAL---DLGKWIHVFMKRS-RITMDMI-VQT----ALIDMYMKCGS 357 (586)
Q Consensus 298 m~~~g~~~~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~ 357 (586)
... .|+. ......+.... ..+++ ++|...++.+.+. ...|+.. .+. ..+.++...|+
T Consensus 176 ~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 176 ANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 553 2321 01112222221 12233 6778888888754 2222221 111 11334457799
Q ss_pred HHHHHHHHhccCCCC---H-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCCHHHHHHH
Q 007871 358 LDEARRIFYSMTKKN---V-ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK---DDLIFLGVLIACSHSGLATEGYRI 430 (586)
Q Consensus 358 ~~~a~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~ 430 (586)
+++|...|+.+.+.+ + .....+..+|...|++++|+..|+++....... .......+..++...|++++|.++
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 999999999988532 1 122335778999999999999999987642111 124566677788999999999999
Q ss_pred HHHhHHhhCCC------------CC---hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 007871 431 FQSMKRHCGIE------------PK---LEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVT 493 (586)
Q Consensus 431 ~~~~~~~~~~~------------~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 493 (586)
++.+... .+ |+ ...+..++..+...|++++|+++++++ ...| +...+..+...+...|+++
T Consensus 333 l~~~~~~--~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~ 410 (765)
T PRK10049 333 TAHTINN--SPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR 410 (765)
T ss_pred HHHHhhc--CCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 9999873 22 22 234567788999999999999999987 3334 6778888888899999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 494 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
+|+..++++++..|+++..+..++..+.+.|++++|..+++++.+..
T Consensus 411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998753
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-18 Score=167.96 Aligned_cols=279 Identities=14% Similarity=0.087 Sum_probs=205.5
Q ss_pred cCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC------hhHHHHHHHHHHhCCCchHHH
Q 007871 223 KGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE-RN------VFSWSIMIDGYAQHGNPKEAL 292 (586)
Q Consensus 223 ~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~l~~~~~~~~~~~~A~ 292 (586)
.|++++|...|+++. +.+..++..+...+...|++++|..+++.+.. ++ ...+..++..|.+.|++++|.
T Consensus 48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 344444555544443 12344566666666677777777777666554 11 235667777788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM----IVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
.+|+++.+.. +++..++..++..+...|++++|...++.+.+.+..+.. ..+..+...+...|++++|...|+++
T Consensus 128 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 128 ELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888887652 445667777788888888888888888887766533321 23456777788889999999998887
Q ss_pred CC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChH
Q 007871 369 TK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445 (586)
Q Consensus 369 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 445 (586)
.+ .+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+. .|+..
T Consensus 207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~ 283 (389)
T PRK11788 207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGAD 283 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCch
Confidence 63 3456778888999999999999999999987432222456788899999999999999999999873 46666
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhc
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-PMKPNLALWGTLLLACRN---HQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 505 (586)
.+..++..+.+.|++++|..+++++ ...|+...+..++..+.. .|+.+++..+++++.+.
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 7788999999999999999999876 556888888888877654 55888999999988874
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-17 Score=161.67 Aligned_cols=428 Identities=11% Similarity=0.035 Sum_probs=257.1
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHHhCCC--CchhHHHHHHHHHHhcCChhHHHHHhccCCCC---C-hhhHHHH
Q 007871 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFL--CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK---D-LVSWNLV 184 (586)
Q Consensus 111 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~-~~~~~~l 184 (586)
|+...+.|.+.+.-.|++..+..+...+...... .-...|--+.++|...|++++|...|.+.... + +..+.-+
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl 348 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL 348 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence 3344445555555555555555555555543211 01122334555555666666666555433321 1 2334445
Q ss_pred HHHHHhCCChhHHHHHHhhCC--CCChh-HHHHHHHHHhhccC----CHHHHHHHHHhCCCC---ChhHHHHHHHHHHhc
Q 007871 185 LRGFVECGEMGKAREVFDEMP--QKDAI-SWSIMIDGYRKKKG----DISSARILFEHMPIK---DLISWNSMIDGYAKI 254 (586)
Q Consensus 185 ~~~~~~~g~~~~A~~~~~~~~--~~~~~-~~~~ll~~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~ 254 (586)
...+++.|+.+.+...|+.+. .||.. +...+...| ...+ ..+.|..++.....+ |...|-.+...+-..
T Consensus 349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly-a~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY-AHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH-HhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 555566666666666665555 33322 222222222 3322 345555555444422 444444444444333
Q ss_pred CC------HHHHHHHHhhCC-CCChhHHHHHHHHHHhCCCchHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHh
Q 007871 255 GD------LVAAQQLFNEMP-ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ---GVRPDV------ISVMGAISACA 318 (586)
Q Consensus 255 g~------~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---g~~~~~------~~~~~l~~~~~ 318 (586)
.- +..|..++..-. ...+...|.+.......|++..|...|.+.... ...++. .+--.+....-
T Consensus 428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 22 222222222221 244556666666666777777777777766543 112222 12223344445
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHH
Q 007871 319 QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKC 395 (586)
Q Consensus 319 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~ 395 (586)
..++.+.|...|..+.+.. +.-+..|-.+..+....++..+|...++... ..++..++.+...+.....+..|.+-
T Consensus 508 ~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 5667777777777766652 1112233333322233356667777777665 35666777777788888777777776
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHhhc------------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 007871 396 FAQMETE-GIPKDDLIFLGVLIACSH------------SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 396 ~~~m~~~-g~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
|....+. ...+|..+...|.+.|.. .+..++|+++|.++.+ ..|.|...-+.++-+++..|++.+
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~ 664 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSE 664 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchH
Confidence 6665542 223566666667665542 2457789999999888 567788888899999999999999
Q ss_pred HHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 463 ALNIVESMP--MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK--ADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 463 A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
|..+|.+.. ......+|..+..+|...|+|..|+++|+...+.. .+++.+...|++++.+.|++.+|.+.+.....
T Consensus 665 A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 665 ARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999883 22356788999999999999999999999998864 56788999999999999999999999888776
Q ss_pred CCCc
Q 007871 539 RKIK 542 (586)
Q Consensus 539 ~~~~ 542 (586)
....
T Consensus 745 ~~p~ 748 (1018)
T KOG2002|consen 745 LAPS 748 (1018)
T ss_pred hCCc
Confidence 5443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-16 Score=162.62 Aligned_cols=432 Identities=9% Similarity=0.016 Sum_probs=279.4
Q ss_pred ccCCCCChHHHHHHHhcc--CCCCcc-hHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcc-cHHHH--HHHHhccCCc
Q 007871 55 TSPNTLNMDQAERLFNQI--YQPNTY-MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNY-TYPFV--LKACGVLMGL 128 (586)
Q Consensus 55 ~~~~~~~~~~A~~~~~~~--~~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~l--l~~~~~~~~~ 128 (586)
..+. |+++.|+..|++. ..|+.. ....++..+...|+.++|+..+++.. .|+.. .+..+ ...+...|++
T Consensus 44 ~~r~-Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARA-GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhC-CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 5566 8888888888877 334431 22277777777788888888888776 22222 22223 4466667888
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHh--CCChhHHHHHHhhCC-
Q 007871 129 VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVE--CGEMGKAREVFDEMP- 205 (586)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~- 205 (586)
++|.++++++.+.. +.++..+..++..+...++.++|++.++++...++.....+..++.. .++..+|+..++++.
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888888887754 22355666777777777888888887777765443332223334433 344444677776666
Q ss_pred -CCC-hhHHHHHHHHHhhccCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 007871 206 -QKD-AISWSIMIDGYRKKKGDISSARILFEHMPIK-DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGY 282 (586)
Q Consensus 206 -~~~-~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 282 (586)
.|+ ...+..+..++ .+.|-...|.++.+.-+.- +...+.-+ +.+.|.+.......++.
T Consensus 198 ~~P~n~e~~~~~~~~l-~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~~vr~a~~~~~---------- 258 (822)
T PRK14574 198 LAPTSEEVLKNHLEIL-QRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAEQVRMAVLPTR---------- 258 (822)
T ss_pred hCCCCHHHHHHHHHHH-HHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHHHHhhcccccc----------
Confidence 343 33334444444 5556666666555543310 11110000 00111111111100000
Q ss_pred HhCCC---chHHHHHHHHHHHC-C-CCCCHHH----HHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007871 283 AQHGN---PKEALYLFREMLCQ-G-VRPDVIS----VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353 (586)
Q Consensus 283 ~~~~~---~~~A~~~~~~m~~~-g-~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (586)
....+ .+.|+.-++.+... + .++.... ..-.+-++...++..++...|+.+...+.+....+-..+.++|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 00111 24555555555542 1 1222111 22344567778888888888888888887767777888888888
Q ss_pred hcCCHHHHHHHHhccCCC---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CCCH---HH
Q 007871 354 KCGSLDEARRIFYSMTKK---------NVISYNVMIAGLGMNGFGEEALKCFAQMETEGI-----------PKDD---LI 410 (586)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~~---~~ 410 (586)
..++.++|..+++.+..+ +......|..+|...+++++|..+++++.+.-. .||+ ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 888999998888877531 233356788889999999999999999887311 2333 23
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRN 488 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 488 (586)
+..++..+...|+..+|++.++.+.. .-|-|......+...+...|.+.+|++.++.. ...| +..+....+.++..
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 45567778899999999999999987 56779999999999999999999999999776 3445 45666777888889
Q ss_pred cCChHHHHHHHHHHHhcCCCCcchH
Q 007871 489 HQNVTLAEVVVEGLVELKADDCGLY 513 (586)
Q Consensus 489 ~~~~~~a~~~~~~~~~~~p~~~~~~ 513 (586)
.+++.+|..+.+.+.+..|+++..-
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999999544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-18 Score=153.88 Aligned_cols=473 Identities=14% Similarity=0.080 Sum_probs=303.5
Q ss_pred hHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc----CCC----CcchHHHHHH
Q 007871 14 PLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI----YQP----NTYMHNTMIR 85 (586)
Q Consensus 14 ~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~----~~~----~~~~~~~ll~ 85 (586)
+|.+-+....-..+|...++.+++....|+......-+.+++.+. ..+.+|++++.-. |.- .....+.+.-
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kk-r~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKK-REFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeeh-hhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 333334444456677777777777777777777665565566666 7777777776433 221 1223445555
Q ss_pred HHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhH
Q 007871 86 GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGC 165 (586)
Q Consensus 86 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 165 (586)
.+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.+...+.|..|+.....||..-|..
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~------------- 349 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK------------- 349 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC-------------
Confidence 666777777777777776654 45555444444455556777777777777776544444332210
Q ss_pred HHHHhccCCCCChhhH-----HHHHHHHHhCCCh--hHHHHHHhhCC----CCCh-hHHHHHHHHHhhccCCHHHHHHHH
Q 007871 166 ARSVFEGSEIKDLVSW-----NLVLRGFVECGEM--GKAREVFDEMP----QKDA-ISWSIMIDGYRKKKGDISSARILF 233 (586)
Q Consensus 166 a~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~--~~A~~~~~~~~----~~~~-~~~~~ll~~~~~~~g~~~~a~~~~ 233 (586)
.-..|+.... +..++-.-+.+.. ++++-.--++. .|+- ..+...+..+ ......+.|..+
T Consensus 350 ------~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~l-k~s~~~~la~dl- 421 (840)
T KOG2003|consen 350 ------EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESL-KASQHAELAIDL- 421 (840)
T ss_pred ------CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHH-HHhhhhhhhhhh-
Confidence 0001111111 1122222222211 11111111111 2221 1122222222 111111111111
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHH----HHH-HHHh-CCCchHHHHHHHHHHHCCCCCCH
Q 007871 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSI----MID-GYAQ-HGNPKEALYLFREMLCQGVRPDV 307 (586)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----l~~-~~~~-~~~~~~A~~~~~~m~~~g~~~~~ 307 (586)
--.-..-+.+.|+++.|.+++.-+.+.|..+-.+ |-. -|.+ ..++..|..+-+..+... .-+.
T Consensus 422 ----------ei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~ 490 (840)
T KOG2003|consen 422 ----------EINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNA 490 (840)
T ss_pred ----------hhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCH
Confidence 0111234678888888888888877655433222 211 1222 345677777666665432 3344
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHH
Q 007871 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLG 384 (586)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~ 384 (586)
.....-.......|++++|...|++.....-......|+ +.-.+-..|++++|+++|-++. ..++.....+...|-
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444444445567789999999999988765333333333 3334667899999999997765 467888888899999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007871 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464 (586)
Q Consensus 385 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 464 (586)
...++..|++++.+.... ++.|+..+.-|...|-+.|+-..|.+++-.--+ -++-+..+...|..-|....-+++|+
T Consensus 570 ~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai 646 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAI 646 (840)
T ss_pred HhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999887764 555678899999999999999999998877766 56779999999999999999999999
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 007871 465 NIVESM-PMKPNLALWGTLLLAC-RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 465 ~~~~~~-~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 525 (586)
.+|++. -++|+..-|..++.+| .+.|++++|..+|+......|.+..++..|.+++...|.
T Consensus 647 ~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 647 NYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999988 4789999999988885 578999999999999999999999999999999888875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-16 Score=157.89 Aligned_cols=473 Identities=13% Similarity=0.098 Sum_probs=349.8
Q ss_pred ChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCC--CCcccHHHHHHHHhccCCchHHHHHH
Q 007871 61 NMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLL--VDNYTYPFVLKACGVLMGLVEGTEIH 135 (586)
Q Consensus 61 ~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~ 135 (586)
.+..+..++... .+.|+...+.|.+.|.-.|++..++++...+...... .-...|-.+.+++-..|++++|...|
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 344555555554 4567888899999999999999999999988765311 12345778889999999999999999
Q ss_pred HHHHHhCCCCchh--HHHHHHHHHHhcCChhHHHHHhccCCC---CChhhHHHHHHHHHhCC----ChhHHHHHHhhCC-
Q 007871 136 GEVVKMGFLCDVF--VVNGLIGMYSKCGHMGCARSVFEGSEI---KDLVSWNLVLRGFVECG----EMGKAREVFDEMP- 205 (586)
Q Consensus 136 ~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~- 205 (586)
.+..+.. ++.+ .+-.|..+|.+.|+++.+...|+.+.. .+..+...+...|+..+ ..+.|..++.+..
T Consensus 331 ~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 331 MESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 8887754 5544 445788999999999999999988754 35566666777776664 5677888877777
Q ss_pred --CCChhHHHHHHHHHhhccCC------HHHHHHHHHh-CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------
Q 007871 206 --QKDAISWSIMIDGYRKKKGD------ISSARILFEH-MPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE------- 269 (586)
Q Consensus 206 --~~~~~~~~~ll~~~~~~~g~------~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 269 (586)
..|...|..+...+ ...+- +..|..++.. +....+...|.+...+...|+++.|...|+....
T Consensus 409 ~~~~d~~a~l~laql~-e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n 487 (1018)
T KOG2002|consen 409 QTPVDSEAWLELAQLL-EQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN 487 (1018)
T ss_pred cccccHHHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC
Confidence 33455555555544 33222 3344433332 2346888999999999999999999999988753
Q ss_pred CCh------hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCch
Q 007871 270 RNV------FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV-ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM 342 (586)
Q Consensus 270 ~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 342 (586)
++. .+-..+...+-..++++.|.+.|....+. -|.- ..|..+.......+...+|...++.+...+ ..++
T Consensus 488 ~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np 564 (1018)
T KOG2002|consen 488 KDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNP 564 (1018)
T ss_pred ccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCc
Confidence 222 12334556666778999999999999986 3443 344444434445578888988888887765 4456
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCHhHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCC
Q 007871 343 IVQTALIDMYMKCGSLDEARRIFYSMT-----KKNVISYNVMIAGLGM------------NGFGEEALKCFAQMETEGIP 405 (586)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~m~~~g~~ 405 (586)
..++.+...|.....+..|.+-|..+. .+|+.+.-+|.+.|.+ .+..++|+++|.+.+.. -+
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dp 643 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DP 643 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-Cc
Confidence 666667778888888888888555544 2466666666665542 24567899999988874 34
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHH
Q 007871 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM----PMKPNLALWGT 481 (586)
Q Consensus 406 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ 481 (586)
-|...-+.+..+++..|++..|..+|.+..+. ......+|-.++.+|..+|++-.|+++|+.. ..+.++.....
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 46678888888999999999999999999983 3456678889999999999999999999876 23458889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-------------------CCchHHHHHHHHHHhCCCc
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA-------------------GMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~m~~~~~~ 542 (586)
|..++...|.+.+|...+..+....|.++.+...++-+..+. +..+.|.++|..|...+-+
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999888877665433 3355677777777665544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-14 Score=150.90 Aligned_cols=423 Identities=9% Similarity=-0.030 Sum_probs=289.2
Q ss_pred HccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHH---HHHHhcCCCchhHH
Q 007871 21 ISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTM---IRGYTQSSNPQKAL 97 (586)
Q Consensus 21 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~A~ 97 (586)
..|++..|...+....+.+..-.+.++ .++. ++... |+.++|+..+++...|+...+..+ ...+...|++++|+
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~-l~~~~-G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQ-IAGWA-GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHH-HHHH-HHHHc-CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 568999999999999987533223344 7777 78888 999999999999976654444433 34677889999999
Q ss_pred HHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--
Q 007871 98 SFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-- 175 (586)
Q Consensus 98 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-- 175 (586)
++|+++.+.... +...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|++.++++.+
T Consensus 123 ely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 999999987433 4566777788889999999999999999875 46666665565556556777679999988764
Q ss_pred -CChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCC--Ch-hHHHHHHHHH
Q 007871 176 -KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK--DL-ISWNSMIDGY 251 (586)
Q Consensus 176 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~l~~~~ 251 (586)
.+...+..+..++.+.|-...|+++...-. +..+-..... =..+.+.+..+....+ +. .-|.
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~------l~~~~~a~~vr~a~~~~~~~~~r~~------ 265 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQ------LERDAAAEQVRMAVLPTRSETERFD------ 265 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHH------HHHHHHHHHHhhcccccccchhhHH------
Confidence 367778889999999999999999888754 2211111100 0111122222211111 00 0000
Q ss_pred HhcCCHHHHHHHHhhCC----C-CCh-----hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007871 252 AKIGDLVAAQQLFNEMP----E-RNV-----FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321 (586)
Q Consensus 252 ~~~g~~~~A~~~~~~~~----~-~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 321 (586)
-.+.|+.-++.+. . |.. .+..-.+-++...|++.++++.|+.+...|.+....+-..+..+|...+
T Consensus 266 ----~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 266 ----IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred ----HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 1122222222222 1 211 1222344566777788888888888887776555566777778888888
Q ss_pred ChhHHHHHHHHHHHcCC-----CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C---------------CH-hHHHH
Q 007871 322 ALDLGKWIHVFMKRSRI-----TMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K---------------NV-ISYNV 378 (586)
Q Consensus 322 ~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~---------------~~-~~~~~ 378 (586)
++++|..+|+.+..... +++......|.-+|...+++++|..+++.+.+ | |- ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 88888888877755431 22333356677778888888888888777653 1 11 23455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC
Q 007871 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458 (586)
Q Consensus 379 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (586)
++..+...|+..+|++.++++... -+-|......+...+...|.+.+|++.++.... -.+.+..+....+.++...|
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~ 498 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQ 498 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhh
Confidence 677788899999999999999774 344667888888888899999999999976655 34446677778888888999
Q ss_pred CHHHHHHHHHhC
Q 007871 459 ELEQALNIVESM 470 (586)
Q Consensus 459 ~~~~A~~~~~~~ 470 (586)
++++|..+.+..
T Consensus 499 e~~~A~~~~~~l 510 (822)
T PRK14574 499 EWHQMELLTDDV 510 (822)
T ss_pred hHHHHHHHHHHH
Confidence 999998888666
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-13 Score=129.39 Aligned_cols=507 Identities=11% Similarity=0.028 Sum_probs=404.4
Q ss_pred CchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHHH
Q 007871 24 TTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSFY 100 (586)
Q Consensus 24 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 100 (586)
+...-.+++....++ ++.++..|...+. . ...++|+-++.+. .+.+...| -++++...++.|..++
T Consensus 361 ~~~~K~RVlRKALe~-iP~sv~LWKaAVe-----l-E~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvL 429 (913)
T KOG0495|consen 361 DTKNKKRVLRKALEH-IPRSVRLWKAAVE-----L-EEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVL 429 (913)
T ss_pred HHHHHHHHHHHHHHh-CCchHHHHHHHHh-----c-cChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHH
Confidence 344446666666654 4566666666665 2 4566688888877 33344444 4455566788999999
Q ss_pred HHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHH----HHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC-
Q 007871 101 VNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEV----VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI- 175 (586)
Q Consensus 101 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 175 (586)
+..++. ++-+..+|.+....--..|+.+...++.++- ...|+..+...|..=...|-+.|..-.+..+...+..
T Consensus 430 NkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi 508 (913)
T KOG0495|consen 430 NKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI 508 (913)
T ss_pred HHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh
Confidence 999876 6778888888777777889999988887754 4568888888888888888888988888887765432
Q ss_pred -----CChhhHHHHHHHHHhCCChhHHHHHHhhCC---CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHH
Q 007871 176 -----KDLVSWNLVLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISSARILFEHMP---IKDLISW 244 (586)
Q Consensus 176 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~ 244 (586)
.-..+|+.-...|.+.+.++-|..+|.... ..+...|......- ...|..+....+|++.. +.....|
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~e-k~hgt~Esl~Allqkav~~~pkae~lw 587 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFE-KSHGTRESLEALLQKAVEQCPKAEILW 587 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHH-HhcCcHHHHHHHHHHHHHhCCcchhHH
Confidence 234689999999999999999999998887 34445555555555 67889999999988776 4577778
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007871 245 NSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321 (586)
Q Consensus 245 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 321 (586)
-.....+...|++..|..++.+.-+ .+...|-.-+........++.|..+|.+.... .|+...|..-+..---.+
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhh
Confidence 8888889999999999999998865 35678888888889999999999999998864 678888877777777889
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 007871 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQ 398 (586)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 398 (586)
+.++|..++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-.+ | .+..|-.|...--+.|.+-+|..++++
T Consensus 666 ~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 666 NVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred hHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 999999999988877 344456788889999999999999999987664 3 556788888888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHH
Q 007871 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLAL 478 (586)
Q Consensus 399 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~ 478 (586)
..-.+ +-+...|...++.-.+.|+.+.|..+..+..+ ..+.+...|..-|....+.++-..+...+.+.. .|+..
T Consensus 745 arlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphV 819 (913)
T KOG0495|consen 745 ARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHV 819 (913)
T ss_pred HHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchh
Confidence 87752 44667888999999999999999999999988 577788889988888888888777777787764 45566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEEC
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEID 553 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~ 553 (586)
...+...+.....+++|.++|+++++.+|++..+|..+-..+.+.|.-++-.+++.+.... .|.-|-.|.-+.
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 6677777888899999999999999999999999999999999999999999999988764 455555565444
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.5e-14 Score=126.88 Aligned_cols=296 Identities=15% Similarity=0.157 Sum_probs=192.9
Q ss_pred chhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhcc--CCCCChHHH-H----------------------
Q 007871 12 KNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTS--PNTLNMDQA-E---------------------- 66 (586)
Q Consensus 12 ~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~~~A-~---------------------- 66 (586)
-++|..+ .+++...++.-+++.|.+.|++.++..-..+++ +.+ .. .++.-| +
T Consensus 119 E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~-LV~~~Ns-~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 119 ENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFR-LVTYYNS-SNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred hhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHH-HHHhhcC-CCCcchhHHHHhhccccccccccccccccH
Confidence 3444443 366889999999999999998888877766655 222 11 111111 1
Q ss_pred -HHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCC
Q 007871 67 -RLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC 145 (586)
Q Consensus 67 -~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 145 (586)
+++-+..+.+..+|..||+++++--..++|.++|++..+...+.+..+||.+|.+-+-..+ ++++.+|....+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC
Confidence 1333334456789999999999999999999999999988889999999999987644333 88999999999999
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHh----ccCC----CCChhhHHHHHHHHHhCCChhH-HHHHHhhCC-----------
Q 007871 146 DVFVVNGLIGMYSKCGHMGCARSVF----EGSE----IKDLVSWNLVLRGFVECGEMGK-AREVFDEMP----------- 205 (586)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~a~~~~----~~~~----~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~----------- 205 (586)
|..|+|+++.+..+.|+++.|.+.+ .+|+ +|...+|..+|..+.+.++..+ |..++..+.
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 9999999999999999988776654 3333 5788888888888888877654 333333322
Q ss_pred -CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHH
Q 007871 206 -QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN---VFSWSIMIDG 281 (586)
Q Consensus 206 -~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~ 281 (586)
+.|...|...+..| ....+.+.|.++..-....+.. ..| .++ ..-|..+...
T Consensus 352 ~p~d~~FF~~AM~Ic-~~l~d~~LA~~v~~ll~tg~N~----------------------~~i-g~~~~~~fYyr~~~~l 407 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSIC-SSLRDLELAYQVHGLLKTGDNW----------------------KFI-GPDQHRNFYYRKFFDL 407 (625)
T ss_pred CCchhHHHHHHHHHH-HHhhhHHHHHHHHHHHHcCCch----------------------hhc-ChHHHHHHHHHHHHHH
Confidence 22334455555555 4555555555443222110000 000 011 1223344455
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q 007871 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338 (586)
Q Consensus 282 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (586)
.++....+.....|+.|+-.-+-|+..+...++++..-.+.++-...++.+++..|.
T Consensus 408 icq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 408 ICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 555556666666666666665666666666666666666666666666666666553
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-14 Score=131.68 Aligned_cols=443 Identities=11% Similarity=0.085 Sum_probs=282.3
Q ss_pred HHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHH-HHHHHhccCCchHHHHHHHHHHHhCCCCc----hhHHHHHHHHHH
Q 007871 84 IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF-VLKACGVLMGLVEGTEIHGEVVKMGFLCD----VFVVNGLIGMYS 158 (586)
Q Consensus 84 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~ 158 (586)
..-|..+.-..+|+..|+-+.+....|+...... +-+.+.+.+++..|.+.++..+..-...+ ..+.+.+...+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 3445555666788888888888777777765433 44667778888888888877766432111 223444445567
Q ss_pred hcCChhHHHHHhccCCC--CChhhHHHHHHHHHhCCChhHHHHHHhhCC----CC------------ChhHHHHHHH---
Q 007871 159 KCGHMGCARSVFEGSEI--KDLVSWNLVLRGFVECGEMGKAREVFDEMP----QK------------DAISWSIMID--- 217 (586)
Q Consensus 159 ~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~------------~~~~~~~ll~--- 217 (586)
+.|.++.|...|++..+ |+..+-..|+-++..-|+.++..+.|.+|. .+ +....+..+.
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~ 367 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH 367 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence 78888888888876653 444443334445555677777777777776 11 1111111111
Q ss_pred --HHhhcc--CCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhHHHHHHHHHHhCCCchHH
Q 007871 218 --GYRKKK--GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN--VFSWSIMIDGYAQHGNPKEA 291 (586)
Q Consensus 218 --~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A 291 (586)
.. .+. .+-++++-.--.+..|-..+- | .-..+-+.+.+....... ...-..-...+.+.|+++.|
T Consensus 368 lk~~-ek~~ka~aek~i~ta~kiiapvi~~~------f--a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 368 LKNM-EKENKADAEKAIITAAKIIAPVIAPD------F--AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHH-HHhhhhhHHHHHHHHHHHhccccccc------h--hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 01 000 011111111111111100000 0 000111111111111000 00001112357899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--HhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 007871 292 LYLFREMLCQGVRPDVISVMGAISA--CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369 (586)
Q Consensus 292 ~~~~~~m~~~g~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (586)
+++++-..+..-+.....-+.+-.. +....++..|.++-+..+... +-++.....-.......|++++|.+.+++..
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 9999988876533333333322222 223446777777776665443 2233322222233345689999999999999
Q ss_pred CCCHhHHHHHHH---HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHH
Q 007871 370 KKNVISYNVMIA---GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446 (586)
Q Consensus 370 ~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 446 (586)
..|...-.+|.. .+-..|+.++|+.+|-++..- +..+...+..+...|....+...|++++.+... -++.|+.+
T Consensus 518 ~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~i 594 (840)
T KOG2003|consen 518 NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAI 594 (840)
T ss_pred cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHH
Confidence 877655444433 467889999999999888763 445667888888999999999999999988876 67778999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 447 YSCLVDLLSRAGELEQALNIVE-SMPM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~-~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
...|.+.|-+.|+-..|.++.- .... +-+..+...|...|....-+++++.+|+++.-+.|+.......++.++.+.|
T Consensus 595 lskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsg 674 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSG 674 (840)
T ss_pred HHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999754 4443 3478888888888999999999999999999999999888888999999999
Q ss_pred CchHHHHHHHHHHhC
Q 007871 525 MWEHALRIRKMMRKR 539 (586)
Q Consensus 525 ~~~~A~~~~~~m~~~ 539 (586)
+|..|.++|+...++
T Consensus 675 nyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 675 NYQKAFDLYKDIHRK 689 (840)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999998664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-12 Score=129.41 Aligned_cols=519 Identities=14% Similarity=0.094 Sum_probs=315.4
Q ss_pred HHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCC
Q 007871 15 LVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSS 91 (586)
Q Consensus 15 l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~ 91 (586)
....+.+.|+.++|.+++.++++.. +..+..|..|-. +|-.. |+.+++...+--. .+.|...|..+.....+.|
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~-IyEqr-Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGE-IYEQR-GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHH-HHHHc-ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 3445667799999999999999986 445555666666 88888 9999999877544 6667788999999999999
Q ss_pred CchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHH----HHHHHHHhcCChhHHH
Q 007871 92 NPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVN----GLIGMYSKCGHMGCAR 167 (586)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~a~ 167 (586)
++++|.-+|.+.++.. +++...+---...|-+.|+...|..-|.++.....+.|..-.. ..++.+...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999874 3344444445566778899999999999999865433333333 3456677778778888
Q ss_pred HHhccCCC-----CChhhHHHHHHHHHhCCChhHHHHHHhhCCC----CC---------------------------hhH
Q 007871 168 SVFEGSEI-----KDLVSWNLVLRGFVECGEMGKAREVFDEMPQ----KD---------------------------AIS 211 (586)
Q Consensus 168 ~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~---------------------------~~~ 211 (586)
+.++.... -+...++.++..+.+..+++.|......+.. +| ...
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 88876543 2456788999999999999998887766541 11 111
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhC----CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHH
Q 007871 212 WSIMIDGYRKKKGDISSARILFEHM----PIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE----RNVFSWSIMIDGYA 283 (586)
Q Consensus 212 ~~~ll~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~ 283 (586)
+...+.....+.+...++..-+-.. ...++..|..+..+|...|++.+|+++|..+.. .+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 1112221112333333333332111 123566788888889999999999999988875 45678888888888
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH--------HcCCCCchhHHHHHHHHHHhc
Q 007871 284 QHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK--------RSRITMDMIVQTALIDMYMKC 355 (586)
Q Consensus 284 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~ 355 (586)
..|.++.|...|+..+... +-+...-.++...+.+.|+.++|.+.+..+. ..+..|...........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 8999999999998888762 3344455667777888899998888887743 223455555555666777777
Q ss_pred CCHHHHHHHHhccCC---------C-----------------CHhHHHHHHHHHHhcCChHHHHHH------HHHHHHCC
Q 007871 356 GSLDEARRIFYSMTK---------K-----------------NVISYNVMIAGLGMNGFGEEALKC------FAQMETEG 403 (586)
Q Consensus 356 g~~~~a~~~~~~~~~---------~-----------------~~~~~~~l~~~~~~~~~~~~A~~~------~~~m~~~g 403 (586)
|+.++-..+-..|.. | ........+.+-.+.++.....+- +.--...|
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 877764443333321 0 111112222222222221111110 11111122
Q ss_pred CCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChH----HHHHHHHHHhhcCCHHHHHHHHHhCC------
Q 007871 404 IPKDD--LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE----HYSCLVDLLSRAGELEQALNIVESMP------ 471 (586)
Q Consensus 404 ~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~------ 471 (586)
+..+. ..+..++.++.+.+++++|..+...+....-+..+.. .-...+.+....+++..|.+.+..+-
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 22222 1344455566666666666666666655322222222 22233445556666666666666551
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-cchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 472 MKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD-CGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 472 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
..| ....|+..+....+.++-..-.+.+..+....|.+ +......+..+...+.|..|...|-+.-.
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 112 22334434444444444444444444444444444 44444444555556666666665544433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-12 Score=121.18 Aligned_cols=480 Identities=15% Similarity=0.099 Sum_probs=378.0
Q ss_pred cCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHH
Q 007871 23 KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSF 99 (586)
Q Consensus 23 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~ 99 (586)
...++|+-++...++. ++.+...+ - ++++. ..++.|.++++.. .+.+...|.+-...--.+|+.+...++
T Consensus 390 E~~~darilL~rAvec-cp~s~dLw----l-AlarL-etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC-CPQSMDLW----L-ALARL-ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred cChHHHHHHHHHHHHh-ccchHHHH----H-HHHHH-HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3445566666666554 22333333 3 35556 7788899888877 566778888777777788999888887
Q ss_pred HHH----hHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChhHHHHHhccC
Q 007871 100 YVN----MKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCD--VFVVNGLIGMYSKCGHMGCARSVFEGS 173 (586)
Q Consensus 100 ~~~----m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~ 173 (586)
+.+ +...|+..+..-|..=...|-..|..-.+..+....+..|++.. ..+|..-...|.+.+.++.|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 765 45678899999999989999999999999999999999887543 458999999999999999999999876
Q ss_pred CC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCChh-HHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHH
Q 007871 174 EI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKDAI-SWSIMIDGYRKKKGDISSARILFEHMP---IKDLISW 244 (586)
Q Consensus 174 ~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~-~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~ 244 (586)
.+ .+...|......=-..|..+.-..+|++.. .|... .|....... -..|++..|..++.... +.+...|
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~-w~agdv~~ar~il~~af~~~pnseeiw 621 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK-WKAGDVPAARVILDQAFEANPNSEEIW 621 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH-HhcCCcHHHHHHHHHHHHhCCCcHHHH
Confidence 54 356778777777777899999999999988 44443 344444445 67799999999988775 3477889
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC
Q 007871 245 NSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV-ISVMGAISACAQVG 321 (586)
Q Consensus 245 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~ 321 (586)
.+-+...+...+++.|..+|.+... ++...|.--+...--.++.++|++++++.++. -|+- ..|..+...+.+.+
T Consensus 622 laavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~ 699 (913)
T KOG0495|consen 622 LAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQME 699 (913)
T ss_pred HHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHH
Confidence 9999999999999999999998864 78888887777777789999999999999886 4554 45667777888899
Q ss_pred ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 007871 322 ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQ 398 (586)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 398 (586)
+.+.|...|..-.+. ++..+..|-.|...--+.|.+-.|..+++...- .+...|-..|..-.+.|+.+.|..++.+
T Consensus 700 ~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 700 NIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998888654443 355667888888888899999999999998762 4678899999999999999999999988
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 007871 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NL 476 (586)
Q Consensus 399 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~ 476 (586)
..+. ++.+...|..-|...-+.++-......+++ ...|++..-.+...+....+++.|.+.|.+. +..| ..
T Consensus 779 ALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G 851 (913)
T KOG0495|consen 779 ALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG 851 (913)
T ss_pred HHHh-CCccchhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 8875 566667777777766666664444433332 4567778888999999999999999999987 4445 56
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
.+|..+...+..+|.-+.-.+++.+.....|.+...|..+..--
T Consensus 852 D~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 852 DAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI 895 (913)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence 88988999999999999999999999999999999888876443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-12 Score=116.57 Aligned_cols=418 Identities=13% Similarity=0.078 Sum_probs=259.4
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHH--hccCCchHH-HHHHHHHHHhCCCCchhHHHHH
Q 007871 77 TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC--GVLMGLVEG-TEIHGEVVKMGFLCDVFVVNGL 153 (586)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l 153 (586)
+.+=|.|+.. ..+|...++.-+|+.|...|+......-..|++.. ....++.-+ .+.|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 3355566553 45677888888888888888777766655555432 233333322 23334444433 2223333
Q ss_pred HHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC----CCChhHHHHHHHHHhhccCCHHHH
Q 007871 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIMIDGYRKKKGDISSA 229 (586)
Q Consensus 154 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~g~~~~a 229 (586)
+.|++.+ ++-+...+...++..+|.++++--..+.|.+++++-. +-+..+||.++.+- +-..+
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~-S~~~~---- 257 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGAS-SYSVG---- 257 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHH-Hhhcc----
Confidence 2343333 5555566667778888888888878888888877765 44556666666654 21111
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhCCCch----HHHHHHHHHHHC
Q 007871 230 RILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMP----ERNVFSWSIMIDGYAQHGNPK----EALYLFREMLCQ 301 (586)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~m~~~ 301 (586)
.+++.+|. .||..|+|+++++..+.|+++ .|++++.+|.+.
T Consensus 258 -------------------------------K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei 306 (625)
T KOG4422|consen 258 -------------------------------KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI 306 (625)
T ss_pred -------------------------------HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 22223332 366666666666666666554 456677788888
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHH-HHHHHHHHHc----CCC----CchhHHHHHHHHHHhcCCHHHHHHHHhccCC--
Q 007871 302 GVRPDVISVMGAISACAQVGALDLG-KWIHVFMKRS----RIT----MDMIVQTALIDMYMKCGSLDEARRIFYSMTK-- 370 (586)
Q Consensus 302 g~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~----~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 370 (586)
|+.|...+|..++..+.+.++..+. ..+..++... .++ .+...|...+..|.+..+.+-|..+..-+..
T Consensus 307 GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~ 386 (625)
T KOG4422|consen 307 GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD 386 (625)
T ss_pred CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 8888888888888888877776543 3333333322 222 2334556667777777777777766554432
Q ss_pred ------CC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCC
Q 007871 371 ------KN---VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE 441 (586)
Q Consensus 371 ------~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 441 (586)
++ ..-|..+....++....+.-+.+|+.|+-.-+-|+..+...++++..-.|.++-.-++|..++. +|..
T Consensus 387 N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght 465 (625)
T KOG4422|consen 387 NWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHT 465 (625)
T ss_pred chhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhh
Confidence 11 2235556667777777888888888888777778888888888888888888888888888777 5655
Q ss_pred CChHHHHHHHHHHhhcC-CH--------HH-----HHHHHH-------hC-CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 007871 442 PKLEHYSCLVDLLSRAG-EL--------EQ-----ALNIVE-------SM-PMKPNLALWGTLLLACRNHQNVTLAEVVV 499 (586)
Q Consensus 442 ~~~~~~~~l~~~~~~~g-~~--------~~-----A~~~~~-------~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 499 (586)
.+......+...+++.. +. .. |..+++ ++ ..+-.....+..+..+.+.|..++|-+++
T Consensus 466 ~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l 545 (625)
T KOG4422|consen 466 FRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEML 545 (625)
T ss_pred hhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHH
Confidence 55555555555555444 11 11 111111 11 12345566677777788999999999999
Q ss_pred HHHHhcC---CCCcch--HHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 007871 500 EGLVELK---ADDCGL--YVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544 (586)
Q Consensus 500 ~~~~~~~---p~~~~~--~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 544 (586)
.-..+.+ |..|.. ...+.+.-.+.+...+|...++-|...+...-
T Consensus 546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~ 595 (625)
T KOG4422|consen 546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPIC 595 (625)
T ss_pred HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhh
Confidence 9886543 444432 33456666778888999999999977766543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=148.12 Aligned_cols=258 Identities=16% Similarity=0.113 Sum_probs=113.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 007871 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV-MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355 (586)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 355 (586)
.+...+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 3456677888888888888665544323444444 44455566778888888888888777533 55567777776 688
Q ss_pred CCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 007871 356 GSLDEARRIFYSMT--KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLATEGYRIFQ 432 (586)
Q Consensus 356 g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (586)
+++++|.+++...- .++...+..++..+...++++++..+++++.... .+++...|..+...+.+.|+.++|.+.++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999998887664 3566677788888999999999999999987633 34566778888889999999999999999
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP--MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
+..+ ..|.|......++..+...|+.+++.++++... .+.++..+..+..++...|+.++|..+++++.+.+|+|+
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 9988 345578889999999999999999888887662 234566788899999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 511 GLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.+...++.++...|+.++|.+++++..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6e-13 Score=122.84 Aligned_cols=215 Identities=13% Similarity=0.118 Sum_probs=152.8
Q ss_pred hccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHH
Q 007871 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALK 394 (586)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 394 (586)
.-.|+.-.+..-|+..++....++. .|-.+..+|....+.++....|+...+ .++.+|..-.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3345555566666665555433222 244455566666666666666665552 345566666666666777788888
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007871 395 CFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM 472 (586)
Q Consensus 395 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 472 (586)
=|++.+. +.|+. ..|..+.-+..+.+.++++...|++.++ .+|.-++.|+....++..+++++.|.+.|+.. ..
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8887777 45544 5666676677778888888888888888 57777888888888888889999998888866 22
Q ss_pred CCC---------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 473 KPN---------LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 473 ~p~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.|. +.+-..++ .+.-.+++..|+.+++++++++|....++..|+....++|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222 11112222 233458999999999999999999999999999999999999999999998643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.5e-12 Score=116.05 Aligned_cols=454 Identities=12% Similarity=0.072 Sum_probs=330.2
Q ss_pred ChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHH
Q 007871 43 EPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVL 119 (586)
Q Consensus 43 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll 119 (586)
+...+....+ .=... ++...|..+|++. ...+...|-..+..-.++.....|..++++....=+..|.. |-..+
T Consensus 72 ~~~~WikYaq-wEesq-~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQ-WEESQ-KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYI 148 (677)
T ss_pred HHHHHHHHHH-HHHhH-HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHH
Confidence 3444444444 23334 7899999999988 55677788888888899999999999999988753333333 33334
Q ss_pred HHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhhHHHHHHHHHhCCChhHH
Q 007871 120 KACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE--IKDLVSWNLVLRGFVECGEMGKA 197 (586)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 197 (586)
..--..|++..|.++|+...+ .+|+...|.+.|..-.+-..++.|..++++.. .|++.+|-...+.=.++|+...|
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 444567999999999999887 67999999999999999999999999999854 68999999999999999999999
Q ss_pred HHHHhhCC--CCChhHHHHHHHHH---hhccCCHHHHHHHHHhCC----CC-ChhHHHHHHHHHHhcCCHHHHHHHHh--
Q 007871 198 REVFDEMP--QKDAISWSIMIDGY---RKKKGDISSARILFEHMP----IK-DLISWNSMIDGYAKIGDLVAAQQLFN-- 265 (586)
Q Consensus 198 ~~~~~~~~--~~~~~~~~~ll~~~---~~~~g~~~~a~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~-- 265 (586)
..+|+... -.|...-..++.++ -..+..++.|.-+|+-.. +. ....|..+...--+-|+.....+..-
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 99999887 22222222222222 145677888888876544 22 34566666666556666544443322
Q ss_pred -hC-----CC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---hccCChhHH
Q 007871 266 -EM-----PE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV-------ISVMGAISAC---AQVGALDLG 326 (586)
Q Consensus 266 -~~-----~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~-------~~~~~l~~~~---~~~~~~~~a 326 (586)
++ .. -|-.+|--.+..--..|+.+...++|+.++.. ++|-. ..|..+=-+| ....+++.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 22 22 25567777777778889999999999999975 56633 1222222222 356789999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHH----HHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 327 KWIHVFMKRSRITMDMIVQTALI----DMYMKCGSLDEARRIFYSMT--KKNVISYNVMIAGLGMNGFGEEALKCFAQME 400 (586)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 400 (586)
.++|+..++. ++....++..+= ..-.++.++..|.+++.... -|-..+|...|..-.+.+++|.+..+|++.+
T Consensus 386 r~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999884 455555555443 34457889999999998876 3778888888999899999999999999999
Q ss_pred HCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH
Q 007871 401 TEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLAL 478 (586)
Q Consensus 401 ~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 478 (586)
+ ..| +-.+|......-...|+.+.|..+|..+..+.........|.+.|+--...|.++.|..++++. ...+...+
T Consensus 465 e--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kv 542 (677)
T KOG1915|consen 465 E--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKV 542 (677)
T ss_pred h--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence 9 455 4467777777677889999999999999885333334556777777778999999999999987 33456667
Q ss_pred HHHHHHHHH-----hcC-----------ChHHHHHHHHHHHhc
Q 007871 479 WGTLLLACR-----NHQ-----------NVTLAEVVVEGLVEL 505 (586)
Q Consensus 479 ~~~l~~~~~-----~~~-----------~~~~a~~~~~~~~~~ 505 (586)
|-.+...-. ..+ +...|..+|+++...
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 766655433 233 567888889888764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-12 Score=119.30 Aligned_cols=314 Identities=12% Similarity=0.054 Sum_probs=231.9
Q ss_pred hccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-hHHHHHHHHHHhCCCchHHHHHHHHHH
Q 007871 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV-FSWSIMIDGYAQHGNPKEALYLFREML 299 (586)
Q Consensus 221 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~ 299 (586)
.+.|..+.|+..|......-+..|.+.+...--..+.+.+..+...+...+. ..--.+..++......++++.-.....
T Consensus 175 k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~ 254 (559)
T KOG1155|consen 175 KELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLS 254 (559)
T ss_pred HhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777666654445555544444334444444444333332221 111234455666667788888888888
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHH
Q 007871 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI--TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYN 377 (586)
Q Consensus 300 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 377 (586)
..|++-+...-+....+.....++++|+.+|+++.+..+ -.|..+|+.++-+-....++.---...-.+.+-.+.|..
T Consensus 255 ~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCC 334 (559)
T KOG1155|consen 255 SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCC 334 (559)
T ss_pred hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCcccee
Confidence 888766666666666667788899999999999988742 124567776654333222222222222233344556777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh
Q 007871 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456 (586)
Q Consensus 378 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (586)
.+.+-|.-.++.++|...|++..+ +.|.. ..|+.+..-|....+...|.+.++.+.+ -.|.|-..|-.|+.+|.-
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYei 410 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEI 410 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHH
Confidence 777888889999999999999998 56655 5778888889999999999999999988 456688999999999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 007871 457 AGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534 (586)
Q Consensus 457 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 534 (586)
.+...-|+-+|++. ..+| |+..|.+|..+|.+.++.++|++.|.++...+..+..++..|+.+|.+.++.++|...|+
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ye 490 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYE 490 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999988 4555 889999999999999999999999999999988888999999999999999999999998
Q ss_pred HHHh
Q 007871 535 MMRK 538 (586)
Q Consensus 535 ~m~~ 538 (586)
+..+
T Consensus 491 k~v~ 494 (559)
T KOG1155|consen 491 KYVE 494 (559)
T ss_pred HHHH
Confidence 8765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-12 Score=116.32 Aligned_cols=454 Identities=12% Similarity=0.060 Sum_probs=339.5
Q ss_pred CCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCch-hHHHHH
Q 007871 75 PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV-FVVNGL 153 (586)
Q Consensus 75 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 153 (586)
.+...|-....--..++++..|..+|++.+.-.. -+...|..-+..-.+...+..|..+++..+..= |.+ ..|-..
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHH
Confidence 3455566666666678889999999999987643 356667777777788889999999999988743 332 345556
Q ss_pred HHHHHhcCChhHHHHHhccCC--CCChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHH
Q 007871 154 IGMYSKCGHMGCARSVFEGSE--IKDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSA 229 (586)
Q Consensus 154 i~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a 229 (586)
+.+--..|++..|.++|++.. +|+..+|++.|..=.+.+.++.|..+|++.. .|+..+|.-....- .+.|++..+
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE-~k~g~~~~a 226 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFE-EKHGNVALA 226 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHH-HhcCcHHHH
Confidence 666677899999999999865 6899999999999999999999999999988 89999998887777 889999999
Q ss_pred HHHHHhCCCC------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C---ChhHHHHHHHHHHhCCCchHHHHH----
Q 007871 230 RILFEHMPIK------DLISWNSMIDGYAKIGDLVAAQQLFNEMPE--R---NVFSWSIMIDGYAQHGNPKEALYL---- 294 (586)
Q Consensus 230 ~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l~~~~~~~~~~~~A~~~---- 294 (586)
..+|+..... +...+.+....-.++..++.|.-+|+-..+ | ....|..+...--+-|+.....+.
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999877632 334566666666677888888888876554 2 244555555555566765544443
Q ss_pred ----HHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCch--hHHHHHHHH--------HHhcCCHHH
Q 007871 295 ----FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM--IVQTALIDM--------YMKCGSLDE 360 (586)
Q Consensus 295 ----~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~g~~~~ 360 (586)
++++++.+ +-|-.+|--.+..-...|+.+...++|+.++..- +|-. ..+...+-. -....+.+.
T Consensus 307 Rk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34445443 5677788888888888899999999999998763 4321 122222211 134678888
Q ss_pred HHHHHhccCC---CCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007871 361 ARRIFYSMTK---KNVI----SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433 (586)
Q Consensus 361 a~~~~~~~~~---~~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (586)
+.++++...+ .... .|-.....-.++.+...|.+++...+ |.-|...+|...|..-.+.+++|....++++
T Consensus 385 tr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 385 TRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888876653 2223 34444555668899999999998766 4789999999999998999999999999999
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL----ALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
... -.|-+..+|...+..-...|+.+.|..+|+-+-.+|.. ..|...+..-...|.+++|..+|+++++..+..
T Consensus 463 fle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 463 FLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV 540 (677)
T ss_pred HHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc
Confidence 988 34557889999999889999999999999988656643 445566666678899999999999999987655
Q ss_pred cchHHHHHHHHH-----hcC-----------CchHHHHHHHHHHhC
Q 007871 510 CGLYVLLSNIYA-----DAG-----------MWEHALRIRKMMRKR 539 (586)
Q Consensus 510 ~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~~~ 539 (586)
. .|...+..-. +.| ....|+.+|++....
T Consensus 541 k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 541 K-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred h-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 5 7777665544 344 566788888877543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-12 Score=127.79 Aligned_cols=312 Identities=15% Similarity=0.198 Sum_probs=174.4
Q ss_pred CCHHHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhC---CCCChhHHHHHHHHHHhCCCchHHHHHHHH
Q 007871 224 GDISSARILFEHMPI---KDLISWNSMIDGYAKIGDLVAAQQLFNEM---PERNVFSWSIMIDGYAQHGNPKEALYLFRE 297 (586)
Q Consensus 224 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 297 (586)
|++++|.+++.++.. .....|..|...|-..|+.+++...+-.. ...|...|..+.....+.|+++.|.-+|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 444444444443331 13333444444444444444444333222 122334444444444444444444444444
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHH----HHHHHHHHhcCCHHHHHHHHhccCC---
Q 007871 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQ----TALIDMYMKCGSLDEARRIFYSMTK--- 370 (586)
Q Consensus 298 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~--- 370 (586)
.++.. +++...+---...|-+.|+...|..-|.++.....+.+..-+ ...++.+...++.+.|.+.++....
T Consensus 233 AI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 233 AIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 44432 223333333333344444444444444444443321111111 1123333344444444444443332
Q ss_pred --CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------------------CCCCCHHHHHHHHHHhhcc
Q 007871 371 --KNVISYNVMIAGLGMNGFGEEALKCFAQMETE---------------------------GIPKDDLIFLGVLIACSHS 421 (586)
Q Consensus 371 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---------------------------g~~p~~~~~~~l~~~~~~~ 421 (586)
-+...++.++..|.+...++.|......+... ++.++... ..+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcc
Confidence 12234445555555555555555554444431 12222222 1233334444
Q ss_pred CCHHHHHHHHHHhHHhhCC--CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChHHHH
Q 007871 422 GLATEGYRIFQSMKRHCGI--EPKLEHYSCLVDLLSRAGELEQALNIVESMPMK---PNLALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 422 g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~l~~~~~~~~~~~~a~ 496 (586)
...+....+......+ .. ..+...|.-+.++|...|++.+|+.++..+... .+...|..+..+|...|.++.|.
T Consensus 391 ~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 4444444444444442 43 346788999999999999999999999998433 25678999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+.|++++...|.+..+...|+.++.+.|+.++|.+.+..+..
T Consensus 470 e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 470 EFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999873
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-12 Score=123.98 Aligned_cols=214 Identities=11% Similarity=0.030 Sum_probs=103.3
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHh--------HHHHHHHHHH
Q 007871 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK---NVI--------SYNVMIAGLG 384 (586)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~--------~~~~l~~~~~ 384 (586)
.+...|+++.|...++.+.+.. +.++.....+...|.+.|++++|.+++..+.+. +.. .|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443 223334444444444444444444444444321 011 1222222222
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007871 385 MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464 (586)
Q Consensus 385 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 464 (586)
...+.+...++|+.+... .+.++.....+..++...|+.++|.+++++..+. +++.... ++.+....++.+++.
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHH--HHHhhccCCChHHHH
Confidence 333344444444444322 2334455555566666666666666666555441 3333221 122223346666666
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 465 NIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 465 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
+.+++. +..| |+.....+...|...+++++|.+.|+++.+..|++.. +..++.++.+.|+.++|.++|++-.
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666555 2233 3444555555566666666666666666666655442 4456666666666666666666543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-13 Score=129.43 Aligned_cols=275 Identities=14% Similarity=0.017 Sum_probs=188.1
Q ss_pred CCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChhHHHHH
Q 007871 255 GDLVAAQQLFNEMPE--RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQG--VRPDVISVMGAISACAQVGALDLGKWI 329 (586)
Q Consensus 255 g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (586)
-+..+|...|..+.+ +| ..+...+..+|...+++++|.++|+.+.+.. ..-+...|.+.+-.+-+. -+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 346677777777543 23 3444556777888888888888888877642 112455666665443321 12222
Q ss_pred H-HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007871 330 H-VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK---NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405 (586)
Q Consensus 330 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 405 (586)
+ +.+.+.. +..+.+|.++..+|.-+++.+.|++.|++...- ...+|+.+..-+.....+|.|+..|+..+. +.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 2 2333332 456677888888888888888888888877642 446777777777777888888888887665 45
Q ss_pred CCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 007871 406 KDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTL 482 (586)
Q Consensus 406 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 482 (586)
|.. ..|..+...|.++++++.|+-.|+++.. --|.+......++..+.+.|+.|+|+.+++++ ...| |+..-...
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 544 4677777788888888888888888766 23446666777777888888888888888877 3333 55555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 483 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+..+...+++++|+..++++.+.-|++..++..++.+|.+.|+.+.|..-+--+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 66677778888888888888888888888888888888888888888776665544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-13 Score=129.56 Aligned_cols=279 Identities=12% Similarity=0.047 Sum_probs=201.4
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCC--CCchhHHHHHHHHHHhcCCHHHHHHH
Q 007871 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI--TMDMIVQTALIDMYMKCGSLDEARRI 364 (586)
Q Consensus 287 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~ 364 (586)
+..+|+..|.+... .+.-+......+..+|...++.++++.+|+.+.+... .-+..+|.+.+--+-+.=.+.---+-
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 46788888888443 3455556777788889999999999999988876632 23556777666433221111111112
Q ss_pred HhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC
Q 007871 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443 (586)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 443 (586)
+-.+.+..+.+|-++...|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.... -.+-+
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rh 488 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRH 488 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchh
Confidence 2222345678899999999999999999999999888 677 457888888888888899999999988766 12223
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
-..|-.++-.|.++++++.|+-.|+++ .+.| +......++..+.+.|+.++|+.+++++..++|.|+-..+..+.++.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 344555778889999999999999887 5666 55666667777888999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCCeeEEEEC----------CeEeEEecCCCCCCChhHH
Q 007871 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEID----------GNIKEFVSGEIFDVQSEEL 572 (586)
Q Consensus 522 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 572 (586)
..+++++|...++++++.- |+.....++++ -+...|.....++|....+
T Consensus 569 ~~~~~~eal~~LEeLk~~v--P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELV--PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred hhcchHHHHHHHHHHHHhC--cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 9999999999999987743 33333333221 2455566666778887773
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-12 Score=125.09 Aligned_cols=278 Identities=14% Similarity=0.040 Sum_probs=221.4
Q ss_pred ccCCHHHHHHHHHhCCCC--ChhH-HHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHH--HHHHHHHhCCCchHHHHH
Q 007871 222 KKGDISSARILFEHMPIK--DLIS-WNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSWS--IMIDGYAQHGNPKEALYL 294 (586)
Q Consensus 222 ~~g~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~A~~~ 294 (586)
..|+++.|.+.+...... ++.. +........+.|+++.|.+.+.++.+ |+..... .....+...|+++.|...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 469999999998876543 2333 33334555899999999999999876 4433222 336688899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchh-------HHHHHHHHHHhcCCHHHHHHHHhc
Q 007871 295 FREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMI-------VQTALIDMYMKCGSLDEARRIFYS 367 (586)
Q Consensus 295 ~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~ 367 (586)
++++.+.. +-+......+...+.+.|+++.+..++..+.+.+..++.. .|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999875 5567788889999999999999999999999887654332 233334444455567778888888
Q ss_pred cCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh
Q 007871 368 MTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444 (586)
Q Consensus 368 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 444 (586)
+.+ .++.....+...+...|+.++|..++++..+ ..|++... ++.+....++.+++.+..+...+ ..+.|+
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~ 328 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTP 328 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCH
Confidence 763 5788899999999999999999999999988 45665322 23334456999999999999988 567788
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
..+..++..+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|..++++...+-
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88999999999999999999999988 567999999999999999999999999999987753
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-09 Score=105.17 Aligned_cols=502 Identities=12% Similarity=0.112 Sum_probs=307.1
Q ss_pred HHHHHHHccCchHHHHHHHHHHH-cCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCc
Q 007871 15 LVSLLQISKTTTHILQILAQLTT-NDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNP 93 (586)
Q Consensus 15 l~~~l~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 93 (586)
+..++...|.+...+..|+.... .-+.....+|...+. ..... |-++.+.+++++..+-++..-+-.+..++..+++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~-Fv~~~-~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLK-FVESH-GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHH-HHHhC-CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccch
Confidence 34455566666666777766433 344455566777777 66666 7788888888877555556677778888888888
Q ss_pred hhHHHHHHHhHhCC------CCCCcccHHHHHHHHhccCCchH---HHHHHHHHHHhCCCCch--hHHHHHHHHHHhcCC
Q 007871 94 QKALSFYVNMKRKG------LLVDNYTYPFVLKACGVLMGLVE---GTEIHGEVVKMGFLCDV--FVVNGLIGMYSKCGH 162 (586)
Q Consensus 94 ~~A~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~ 162 (586)
++|.+.+....... -+-+...|..+-...++..+.-. ...+++.+... -+|. ..|.+|.+-|.+.|+
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~ 263 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGL 263 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhh
Confidence 88888888775432 12244455555555544433322 22333333221 2343 478899999999999
Q ss_pred hhHHHHHhccCCCC--ChhhHHHHHHHHHhC----------------CC------hhHHHHHHhhCC-------------
Q 007871 163 MGCARSVFEGSEIK--DLVSWNLVLRGFVEC----------------GE------MGKAREVFDEMP------------- 205 (586)
Q Consensus 163 ~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~----------------g~------~~~A~~~~~~~~------------- 205 (586)
+++|..+|++.... .+.-|+.+...|++. |+ ++-.+.-|+.+.
T Consensus 264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR 343 (835)
T KOG2047|consen 264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR 343 (835)
T ss_pred hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence 99999999876543 222233333333221 11 222233333332
Q ss_pred --CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCC---C------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---
Q 007871 206 --QKDAISWSIMIDGYRKKKGDISSARILFEHMPI---K------DLISWNSMIDGYAKIGDLVAAQQLFNEMPERN--- 271 (586)
Q Consensus 206 --~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~---~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--- 271 (586)
..+..+|..-+. ...|+..+-...+.+... | -...|..+...|-..|+++.|..+|++..+-+
T Consensus 344 Qn~~nV~eW~kRV~---l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 344 QNPHNVEEWHKRVK---LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred cCCccHHHHHhhhh---hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 112333333333 235555555555544431 1 23458899999999999999999999998732
Q ss_pred ----hhHHHHHHHHHHhCCCchHHHHHHHHHHHC-----------CCCCCH------HHHHHHHHHHhccCChhHHHHHH
Q 007871 272 ----VFSWSIMIDGYAQHGNPKEALYLFREMLCQ-----------GVRPDV------ISVMGAISACAQVGALDLGKWIH 330 (586)
Q Consensus 272 ----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----------g~~~~~------~~~~~l~~~~~~~~~~~~a~~~~ 330 (586)
..+|......-.+..+++.|+++++..... +.++.. ..|...+..--..|-++....+|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY 500 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY 500 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence 245656666667788899999988877532 111111 23444444455667888889999
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCH-hHHHHHHHHHHh---cCChHHHHHHHHHHHHC
Q 007871 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK----KNV-ISYNVMIAGLGM---NGFGEEALKCFAQMETE 402 (586)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~ 402 (586)
+.+.+..+-... +.......+-...-++++.+++++-.. |++ ..|+..+.-+.+ ....+.|..+|++..+
T Consensus 501 driidLriaTPq-ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~- 578 (835)
T KOG2047|consen 501 DRIIDLRIATPQ-IIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD- 578 (835)
T ss_pred HHHHHHhcCCHH-HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Confidence 999888765333 333333344455668899999987663 554 367776665543 2468999999999999
Q ss_pred CCCCCHH-HHHHHHHH-hhccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 007871 403 GIPKDDL-IFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPK--LEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLA 477 (586)
Q Consensus 403 g~~p~~~-~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 477 (586)
|++|... |...+-.- =-+.|-...|..+++++.. ++++. ...|+..|.-....=-.....++|++. ..-|+..
T Consensus 579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~ 656 (835)
T KOG2047|consen 579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSK 656 (835)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHH
Confidence 6777653 32222222 2346888999999999877 56554 356776665333222222333344433 1224444
Q ss_pred HHHHHH---HHHHhcCChHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCch
Q 007871 478 LWGTLL---LACRNHQNVTLAEVVVEGLVELKAD--DCGLYVLLSNIYADAGMWE 527 (586)
Q Consensus 478 ~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 527 (586)
.-...+ ..-.+.|..+.|..+|....+.-++ +...|...-..-.+.|+-+
T Consensus 657 ~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 657 AREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 433333 3356789999999999998887643 5667888877788888833
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.1e-11 Score=120.13 Aligned_cols=275 Identities=13% Similarity=0.019 Sum_probs=125.8
Q ss_pred cCCHHHHHHHHHhCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh--hHHHHHHHHHHhCCCchHHHHHH
Q 007871 223 KGDISSARILFEHMPI--KD-LISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNV--FSWSIMIDGYAQHGNPKEALYLF 295 (586)
Q Consensus 223 ~g~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~--~~~~~l~~~~~~~~~~~~A~~~~ 295 (586)
.|+++.|.+.+....+ |+ ...+-....++...|+.+.|.+.+.+..+ |+. ...-.....+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555555555544332 11 12223333445555666666666655432 222 12222345555666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH---H----hcCCHHHHHHHHhcc
Q 007871 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY---M----KCGSLDEARRIFYSM 368 (586)
Q Consensus 296 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~a~~~~~~~ 368 (586)
+.+.+.. +-+...+..+...+...|+++.+...+..+.+.++.++......-..++ . .....+...+.++..
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 6666553 3344455556666666666666666666666655332222111111111 1 111223333334333
Q ss_pred CC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHhhccCCHHHHHHHHHHhHHhhCCCC
Q 007871 369 TK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI--F-LGVLIACSHSGLATEGYRIFQSMKRHCGIEP 442 (586)
Q Consensus 369 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 442 (586)
++ .++..+..++..+...|+.++|.+++++..+. .|+... + ..........++.+.+.+.++...+ ..+.
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~ 331 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDD 331 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCC
Confidence 32 25555555556666666666666666665552 233221 0 1111111223444455555544444 2222
Q ss_pred Ch--HHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007871 443 KL--EHYSCLVDLLSRAGELEQALNIVES--M-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502 (586)
Q Consensus 443 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 502 (586)
|+ ....+++..+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 3344445555555555555555552 1 23444444444444455555555555555444
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.7e-11 Score=108.49 Aligned_cols=352 Identities=14% Similarity=0.056 Sum_probs=240.4
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHhhCCC---CChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCCh-hHHHHHHHH
Q 007871 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ---KDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL-ISWNSMIDG 250 (586)
Q Consensus 175 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~ 250 (586)
+.|...+......+.+.|..+.|...|..... .....|..+...+ .+.+.+..+...+...+. ..--.+..+
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li----t~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI----TDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh----chHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 34555566666667778888888888877763 2333343333333 344444333333322211 111223344
Q ss_pred HHhcCCHHHHHHHHhhCCC---CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChh
Q 007871 251 YAKIGDLVAAQQLFNEMPE---RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGV--RPDVISVMGAISACAQVGALD 324 (586)
Q Consensus 251 ~~~~g~~~~A~~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~~~~~ 324 (586)
+-...+.+++..-.+.... |+ ...-+....+.-...|+++|+.+|++..++.. -.|..+|..++-.-.....+.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 4455566666555554443 22 22223333445567889999999999998731 125667776664433322221
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007871 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMET 401 (586)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 401 (586)
++..-.-.--+.-+.|...+.+.|.-.++.++|...|+...+ .....|+.+..-|....+...|++.+++.++
T Consensus 317 ----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd 392 (559)
T KOG1155|consen 317 ----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD 392 (559)
T ss_pred ----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh
Confidence 111111111123445677788888889999999999998875 3456788889999999999999999999998
Q ss_pred CCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHH
Q 007871 402 EGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP--MKPNLAL 478 (586)
Q Consensus 402 ~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~ 478 (586)
+.| |-..|..|.++|.-.+.+.=|+-.|++... --|.|...|.+|+++|.+.++.++|++.|.+.- .+.+...
T Consensus 393 --i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~ 468 (559)
T KOG1155|consen 393 --INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSA 468 (559)
T ss_pred --cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHH
Confidence 455 557999999999999999999999999977 345588999999999999999999999999872 2335678
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVEL-------KADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+..+...+.+.++.++|...|++.++. +|....+..-|+.-+.+.+++++|..+......
T Consensus 469 l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 469 LVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 889999999999999999999998872 344455555578888999999999887766544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.4e-10 Score=107.00 Aligned_cols=262 Identities=15% Similarity=0.015 Sum_probs=185.2
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (586)
+........-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=..+++.- |..+.+|-++.-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHH
Confidence 3344444555667788888888888877653 5566666666667777777766666666666653 5566677777777
Q ss_pred HHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007871 352 YMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 428 (586)
|...|++++|++.|.+... .-...|-.+..+|+-.|..|.|+..+...-+. ++-...-+.-+..-|.+.++.+.|.
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHH
Confidence 7777888888888877653 23467888888888888888888887776652 1111222333444577778888888
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 007871 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP--------MKP-NLALWGTLLLACRNHQNVTLAEVVV 499 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 499 (586)
++|..... -.|.|+...+.++-.....+.+.+|..+|+... .++ -.++++.|..+|.+.+.+++|+..+
T Consensus 401 ~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 401 KFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 88888766 445567777777777777788888888876551 111 2355777778888888888888888
Q ss_pred HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 500 EGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 500 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
++++.+.|.++.++..++.+|...|+++.|.+.|.+...
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 888888888888888888888888888888888777644
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-11 Score=118.85 Aligned_cols=282 Identities=11% Similarity=0.040 Sum_probs=204.9
Q ss_pred HHhcCCHHHHHHHHhhCCC--CCh-hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChhH
Q 007871 251 YAKIGDLVAAQQLFNEMPE--RNV-FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV--ISVMGAISACAQVGALDL 325 (586)
Q Consensus 251 ~~~~g~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~--~~~~~l~~~~~~~~~~~~ 325 (586)
....|+++.|.+.+.+..+ |+. ..+-....+..+.|+++.|...+.+..+. .|+. .........+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 3568999999999988765 433 33444567788889999999999998875 3444 233445777888999999
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHH----HHHHHHhcCChHHHHHHHHH
Q 007871 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNV----MIAGLGMNGFGEEALKCFAQ 398 (586)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~----l~~~~~~~~~~~~A~~~~~~ 398 (586)
|...++.+.+.. +.++.+...+..++...|++++|.+.+..+.+ .+...+.. ........+..++..+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999886 44667888999999999999999999988874 23333321 11222333333444445555
Q ss_pred HHHCC---CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHH--HHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007871 399 METEG---IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH--YSCLVDLLSRAGELEQALNIVESM-PM 472 (586)
Q Consensus 399 m~~~g---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~ 472 (586)
+.+.. .+.+...+..+...+...|+.++|.+++++..+. .+++... .....-.....++.+.+.+.+++. +.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 55431 1237788888999999999999999999999883 3333321 111122223457888888888776 34
Q ss_pred CC-CH--HHHHHHHHHHHhcCChHHHHHHHHH--HHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 473 KP-NL--ALWGTLLLACRNHQNVTLAEVVVEG--LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 473 ~p-~~--~~~~~l~~~~~~~~~~~~a~~~~~~--~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.| |+ ....++...|.+.|++++|.+.|++ +.+..|++.. +..++.++.+.|+.++|.+++++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45 34 5667889999999999999999994 6666666554 66999999999999999999998644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.1e-14 Score=130.37 Aligned_cols=251 Identities=13% Similarity=0.107 Sum_probs=101.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhC-CC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007871 246 SMIDGYAKIGDLVAAQQLFNEM-PE----RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320 (586)
Q Consensus 246 ~l~~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 320 (586)
.+...+.+.|++++|.+++++. .. .|...|..+.......++++.|...++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 3455666777777777777432 22 2445555566666677788888888888776542 244455555555 677
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCHhHHHHHHHHHHhcCChHHHHHH
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-----KKNVISYNVMIAGLGMNGFGEEALKC 395 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~ 395 (586)
+++++|..++....+.. +++..+...+..+.+.++++++.++++.+. +++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77888877776654432 345556667777888888888888877743 24667778888888889999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 007871 396 FAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK 473 (586)
Q Consensus 396 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 473 (586)
+++..+ ..|+ ......++..+...|+.+++.+++....+. .+.|+..+..++.+|...|+.++|..++++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999888 4564 567778888888899999988888888773 3667778888899999999999999999887 333
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 474 P-NLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 474 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
| |+.....+..++...|+.++|..+.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 4 677777888888999999999988887764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.1e-11 Score=117.95 Aligned_cols=441 Identities=14% Similarity=0.071 Sum_probs=229.7
Q ss_pred CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHH
Q 007871 73 YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG 152 (586)
Q Consensus 73 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 152 (586)
..||.++|..+|.-|+..|+.+.|- +|.-|.-+....+...|+.++.+....++.+.++ .|...+|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 4555566666666666666666665 6665555555555555666666655555555443 455556666
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC-----CCChhHHHHHHHHHhhccCCHH
Q 007871 153 LIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-----QKDAISWSIMIDGYRKKKGDIS 227 (586)
Q Consensus 153 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~g~~~ 227 (586)
|..+|...||+.. .+..++ -...+...+...|.-..-..++..+. -||..+ .+... ...|-++
T Consensus 89 Ll~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illl-v~eglwa 156 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLL-VLEGLWA 156 (1088)
T ss_pred HHHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHH-HHHHHHH
Confidence 6666666665543 111111 01111222222222222222222222 111111 11111 2345556
Q ss_pred HHHHHHHhCCCC---ChhHHHHHHHHHHhc-CCHHHHHHHHhhCCC-CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 007871 228 SARILFEHMPIK---DLISWNSMIDGYAKI-GDLVAAQQLFNEMPE-RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302 (586)
Q Consensus 228 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 302 (586)
.+.+++..++.. .+... +++-.... ..+++-........+ ++..+|.+++.+-..+|+.+.|..++.+|.+.|
T Consensus 157 qllkll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 666665555411 11111 12222221 223344444444443 677777777777777777777777777777777
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH----------------------
Q 007871 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE---------------------- 360 (586)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---------------------- 360 (586)
++.+.+-|..++.+ .++...+..+++-|.+.|+.|+..|+...+..+...|....
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg 311 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRG 311 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcc
Confidence 77777766666655 66666777777777777777777776655544444322111
Q ss_pred --HHHHHhcc---------CC-------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCH-HHHHHHHHHhh
Q 007871 361 --ARRIFYSM---------TK-------KNVISYNVMIAGLGMNGFGEEALKCFAQMETEG--IPKDD-LIFLGVLIACS 419 (586)
Q Consensus 361 --a~~~~~~~---------~~-------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~~p~~-~~~~~l~~~~~ 419 (586)
|.+.++.- ++ .....|...+.. ..+|+-++++++-..|..-- ..++. ..|..++.-|.
T Consensus 312 ~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyF 390 (1088)
T KOG4318|consen 312 LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYF 390 (1088)
T ss_pred cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHH
Confidence 11111110 00 111233333332 33688888888887775421 22221 23333332222
Q ss_pred cc----------------------CCHHHHHHHHHHhHHh----------------------------------------
Q 007871 420 HS----------------------GLATEGYRIFQSMKRH---------------------------------------- 437 (586)
Q Consensus 420 ~~----------------------g~~~~A~~~~~~~~~~---------------------------------------- 437 (586)
+. .+..+..++.......
T Consensus 391 rr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~ 470 (1088)
T KOG4318|consen 391 RRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLN 470 (1088)
T ss_pred HHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 11 0111111111100000
Q ss_pred --------------hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007871 438 --------------CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-----MKPNLALWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 438 --------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~ 498 (586)
+....-...|..|++.+....+.+.|..+.++.. ..-|...+..+...+.+.+....+..+
T Consensus 471 se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~ti 550 (1088)
T KOG4318|consen 471 SEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTI 550 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHH
Confidence 0000111345556666666667777777777663 123445566777778888888889998
Q ss_pred HHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 499 VEGLVELK---ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 499 ~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
++++.+.- |........+.......|+.+.-.++.+-+...|+.-
T Consensus 551 L~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 551 LYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88888742 4445566677777788899888888998888888876
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.2e-10 Score=102.17 Aligned_cols=276 Identities=13% Similarity=0.021 Sum_probs=167.6
Q ss_pred cCCHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhCCCchHHHHHH
Q 007871 223 KGDISSARILFEHMPIK---DLISWNSMIDGYAKIGDLVAAQQLFNEMPER----NVFSWSIMIDGYAQHGNPKEALYLF 295 (586)
Q Consensus 223 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~ 295 (586)
.|++..|.+...+..+. ....|..-..+.-..|+.+.+-..+.+..++ +....-.........|++..|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44455554444433211 2222333334444555555555555555432 2333444455555666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDM-------IVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 296 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
.++.+.+ +-+.........+|.+.|++.....++..+.+.|.-.+. .++..+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6666553 334445555566666666666666666666666544332 24555555555555555555666666
Q ss_pred C---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChH
Q 007871 369 T---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLE 445 (586)
Q Consensus 369 ~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 445 (586)
+ +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ...-.+.+.++...-.+..+...+ ..+.++.
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~--~h~~~p~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLK--QHPEDPL 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHH--hCCCChh
Confidence 5 346667777777788888888888888887776666651 122235566777777777777666 3444556
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 505 (586)
.+.+|+..|.+.+.|.+|.+.|+.. +..|+...|..+..++.+.|+..+|....++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7777778888888888888877755 56677777777777777888888877777776643
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-10 Score=105.54 Aligned_cols=481 Identities=11% Similarity=0.013 Sum_probs=299.5
Q ss_pred CchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc--CCCCcchHHHHHHHHhcCCCchhHHHHHH
Q 007871 24 TTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMHNTMIRGYTQSSNPQKALSFYV 101 (586)
Q Consensus 24 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 101 (586)
++..|.-+-+.....+ -||.-...+.+ ++.-. |++..|..+...- .+.+..+.......+.+..+|++|+.++.
T Consensus 31 ~y~~a~f~adkV~~l~--~dp~d~~~~aq-~l~~~-~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~ 106 (611)
T KOG1173|consen 31 RYKTALFWADKVAGLT--NDPADIYWLAQ-VLYLG-RQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLG 106 (611)
T ss_pred hhhHHHHHHHHHHhcc--CChHHHHHHHH-HHHhh-hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554444444433 45555555666 56566 7788888877643 66777788888888888888999988887
Q ss_pred HhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhH
Q 007871 102 NMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSW 181 (586)
Q Consensus 102 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 181 (586)
.... .-+...|-.-=. +..-..+.+. ++. +.......+-.-...|....+.++|...|.+..-.|+..+
T Consensus 107 ~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~ 175 (611)
T KOG1173|consen 107 RGHV---ETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCF 175 (611)
T ss_pred ccch---hhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhH
Confidence 3310 001111000000 0000001111 000 0001111111112334445556666666655544444433
Q ss_pred HHHHHHHHhC-CChhHHHHHHhhCC-----CCChhHHHHHHHHHhhccCCHHHHHHHH-HhC--CCCChhHHHHHHHHHH
Q 007871 182 NLVLRGFVEC-GEMGKAREVFDEMP-----QKDAISWSIMIDGYRKKKGDISSARILF-EHM--PIKDLISWNSMIDGYA 252 (586)
Q Consensus 182 ~~l~~~~~~~-g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~g~~~~a~~~~-~~~--~~~~~~~~~~l~~~~~ 252 (586)
..+...-... =-..+-..+++.+. ..+......+......+..+.+.-...= +.+ ...+........+-+.
T Consensus 176 Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y 255 (611)
T KOG1173|consen 176 EAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLY 255 (611)
T ss_pred HHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHH
Confidence 3322211110 00112222222211 1111112222221100100000000000 001 1235666667777888
Q ss_pred hcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 007871 253 KIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329 (586)
Q Consensus 253 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (586)
..+++.+..++++.+.+ ++...+..-|.++...|+..+-.-+=.++++. .|-...+|-.+..-|...|+.++|..+
T Consensus 256 ~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred HcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 99999999999999886 34455666677888899988888888888876 466778999999999999999999999
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 007871 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK 406 (586)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 406 (586)
|......+.. -...|-.+...|+-.|..++|+..+....+ | ....+--+.--|.+.++.+.|.+.|.+.... .+.
T Consensus 335 ~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~ 412 (611)
T KOG1173|consen 335 FSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APS 412 (611)
T ss_pred HHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCC
Confidence 9988766532 234677788899999999999998876553 1 1122223344577889999999999998873 344
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhh----C-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHH
Q 007871 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHC----G-IEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALW 479 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~ 479 (586)
|+...+-+.-.....+.+.+|..+|+...... . ..-...+++.|+.+|.+.+++++|+..+++. . .+.+..++
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~ 492 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTH 492 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHH
Confidence 66778888777788999999999999877310 0 1124567899999999999999999999987 2 34478888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
..+.-.|...|+++.|...|.+++.+.|++..+-..|..+...
T Consensus 493 asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 493 ASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 8999899999999999999999999999998777777655433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.6e-11 Score=107.96 Aligned_cols=197 Identities=14% Similarity=0.055 Sum_probs=159.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 418 (586)
...+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566777788888888888888876653 345677778888889999999999999888752 34556777788888
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 496 (586)
...|++++|.+.++........+.....+..++.++...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8999999999999998873222334567778889999999999999999877 2333 4667788888899999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
..++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998888888889999999999999999998887653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-10 Score=102.64 Aligned_cols=283 Identities=14% Similarity=0.105 Sum_probs=206.7
Q ss_pred hcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 007871 253 KIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWI 329 (586)
Q Consensus 253 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~ 329 (586)
..|++..|++...+-.+ .....|..-..+--+.||.+.+-.++.+.-+.--.++.....+........|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 36899999998887654 234455555666778899999999999888763355566666777778888999999888
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-----------HhHHHHHHHHHHhcCChHHHHHHHHH
Q 007871 330 HVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN-----------VISYNVMIAGLGMNGFGEEALKCFAQ 398 (586)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~ 398 (586)
...+.+.+ +-++.+......+|.+.|++.....++..+.+.. ..+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 88888876 4456677888899999999999999998887531 23566666666666666666667776
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCH
Q 007871 399 METEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNL 476 (586)
Q Consensus 399 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~ 476 (586)
.... .+-++.....++.-+...|+.++|.++..+..++ +..|+. ..+ -...+-++.+.-++..++. +. +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L---~~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL---CRL-IPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH---HHH-HhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6553 5666777777888888899999999999888884 555551 112 2234556655555555444 11 2244
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
..+.++...|.+++.|.+|...|+.+++..| +...|..++.++.+.|+..+|.+..++....-.+|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 7788888889999999999999998777655 45688899999999999999999988876444433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-09 Score=100.43 Aligned_cols=432 Identities=13% Similarity=0.089 Sum_probs=237.5
Q ss_pred HHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--hcC
Q 007871 86 GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG--LIGMYS--KCG 161 (586)
Q Consensus 86 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~~~--~~g 161 (586)
-+...|++++|.+...++...+ +-|...+..-+-++...+.+++|..+.+.- + -..+++. +=.+|| +.+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~---~---~~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKN---G---ALLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhc---c---hhhhcchhhHHHHHHHHHcc
Confidence 3445566666666666666543 223334444444555556666665332211 1 0111111 223333 566
Q ss_pred ChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCC--
Q 007871 162 HMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-- 239 (586)
Q Consensus 162 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-- 239 (586)
..++|...++.....+..+...-...+.+.|++++|+++|+.+...+...+...+.+-+...+..-.+. +.+.....
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e 172 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPE 172 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCc
Confidence 777777777644444544555566667777777777777777753333333322222111111111221 23333322
Q ss_pred -ChhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCC-----h-----hHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 007871 240 -DLISWNSMIDGYAKIGDLVAAQQLFNEMP--------ERN-----V-----FSWSIMIDGYAQHGNPKEALYLFREMLC 300 (586)
Q Consensus 240 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~-----~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 300 (586)
+-..+......+...|++.+|+++++... +.| + ..-..+.-++...|+..+|..++...++
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 22223333445667788888888887762 111 1 1223345567788999999999999988
Q ss_pred CCCCCCHHHHHHHHH---HHhccCChhH--HHHHHHHHH-----------HcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007871 301 QGVRPDVISVMGAIS---ACAQVGALDL--GKWIHVFMK-----------RSRITMDMIVQTALIDMYMKCGSLDEARRI 364 (586)
Q Consensus 301 ~g~~~~~~~~~~l~~---~~~~~~~~~~--a~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 364 (586)
.. ++|........+ +.....++-. +...++... ...-.-....-+.++.+| .+..+.+.++
T Consensus 253 ~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~ 329 (652)
T KOG2376|consen 253 RN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVREL 329 (652)
T ss_pred hc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHH
Confidence 75 455533222222 2222222111 111111111 000000111112233333 4566777777
Q ss_pred HhccCCCC-HhHHHHHHHH-HH-hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHH-------
Q 007871 365 FYSMTKKN-VISYNVMIAG-LG-MNGFGEEALKCFAQMETEGIPKDD--LIFLGVLIACSHSGLATEGYRIFQ------- 432 (586)
Q Consensus 365 ~~~~~~~~-~~~~~~l~~~-~~-~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~------- 432 (586)
-....... ...+.+++.. +. +...+.++.+++...-+. .|.. ......+......|+++.|.+++.
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 77776432 3344444433 22 223577888888777663 3433 445555666788999999999999
Q ss_pred -HhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007871 433 -SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--------PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGL 502 (586)
Q Consensus 433 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 502 (586)
.+.+ .+ ..+.+...+...|.+.++.+.|..++++. ...+ -..++..+...-.++|+.++|..+++++
T Consensus 408 ss~~~-~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 408 SSILE-AK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhh-hc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 4433 23 34456667888888888887777777655 1112 1233444444556779999999999999
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 007871 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRK 534 (586)
Q Consensus 503 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 534 (586)
++.+|++..+...++-+|++. +.+.|..+-+
T Consensus 485 ~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 485 VKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 999999999999999888765 4556655543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-10 Score=104.21 Aligned_cols=408 Identities=13% Similarity=0.016 Sum_probs=260.1
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhHhCCCCCC-cccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCch-hHHHHHHHHH
Q 007871 80 HNTMIRGYTQSSNPQKALSFYVNMKRKGLLVD-NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDV-FVVNGLIGMY 157 (586)
Q Consensus 80 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~ 157 (586)
+-...+-|.++|++++|+++|...++. .|| +..|.....+|...|+++.+.+-....++ +.|+- ..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHH
Confidence 445567788899999999999998886 567 66777788888888999988887777776 34553 3666677888
Q ss_pred HhcCChhHHHHHhc------cCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC---CCChhHHHHHHHHHhhccCCHHH
Q 007871 158 SKCGHMGCARSVFE------GSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISS 228 (586)
Q Consensus 158 ~~~g~~~~a~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~g~~~~ 228 (586)
-..|++++|+.=+. ...... ...++.-..+..-..++.+-+..=. -|......+.+..+ . .++..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s---~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF-~--~~~~~ 267 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNAS---IEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF-H--ADPKP 267 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccch---hHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc-c--ccccc
Confidence 88888888864321 111111 1111111111111223333333211 23333333333332 0 00000
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhc-CCHHHHHHHHhhCC-------CC---C------hhHHHHHHHHHHhCCCchHH
Q 007871 229 ARILFEHMPIKDLISWNSMIDGYAKI-GDLVAAQQLFNEMP-------ER---N------VFSWSIMIDGYAQHGNPKEA 291 (586)
Q Consensus 229 a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-------~~---~------~~~~~~l~~~~~~~~~~~~A 291 (586)
.......+.|...-..+=..+... ..+..|.+.+.+-. .. | ..+.......+.-.|+...|
T Consensus 268 --~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a 345 (606)
T KOG0547|consen 268 --LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGA 345 (606)
T ss_pred --cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhh
Confidence 000000001111111111111111 12333333332221 11 1 12222223334567899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-
Q 007871 292 LYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK- 370 (586)
Q Consensus 292 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 370 (586)
..-|+..+.....++. .|-.+..+|...++.++....|+...+.+ +.++.+|..-.+++.-.+++++|..-|++...
T Consensus 346 ~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 346 QEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISL 423 (606)
T ss_pred hhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999987533333 37777888999999999999999998887 44667788888888888999999999998875
Q ss_pred --CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC-----
Q 007871 371 --KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK----- 443 (586)
Q Consensus 371 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----- 443 (586)
.++..|-.+..+..+.+++++++..|++.+.. ++..+..|+.....+..+++++.|.+.|+..+. +.|+
T Consensus 424 ~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~ 499 (606)
T KOG0547|consen 424 DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLII 499 (606)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hcccccccc
Confidence 35567777777778889999999999999885 666778999999999999999999999999877 2222
Q ss_pred ----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 444 ----LEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 444 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
+.+...++-.- -.+++..|.+++.+. ...| ....+..|...-.+.|+.++|+++|++...+.
T Consensus 500 v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred ccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 22222222222 348999999999987 4556 34567888888899999999999999988754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-10 Score=101.59 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=124.7
Q ss_pred CCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCC-c--hhHHHHHHHHHHhcCChhHHH
Q 007871 91 SNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLC-D--VFVVNGLIGMYSKCGHMGCAR 167 (586)
Q Consensus 91 ~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~~a~ 167 (586)
+++++|.++|-+|.+.. +-+..+..+|-+.+-+.|..+.|..+++.+.++.--+ + ....-.|..-|...|-++.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45566666666665531 1133334455555556666666666666665532111 1 112334566677777777777
Q ss_pred HHhccCCCC---ChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHH
Q 007871 168 SVFEGSEIK---DLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISW 244 (586)
Q Consensus 168 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 244 (586)
.+|..+.+. -..+...|+..|-...+|++|++.-+++.+-+..+++.-|..+ |
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqf------------------------y 183 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQF------------------------Y 183 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHH------------------------H
Confidence 777766552 2345666777777777777777777766654555555555544 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007871 245 NSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321 (586)
Q Consensus 245 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 321 (586)
+.+...+....+++.|..++.+..+ ..+.+--.+.......|+++.|.+.++...+.+..--+.+...+..+|...|
T Consensus 184 CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 184 CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 4444445555556666666655543 2233444455556666666666666666666543333344455555556666
Q ss_pred ChhHHHHHHHHHHHc
Q 007871 322 ALDLGKWIHVFMKRS 336 (586)
Q Consensus 322 ~~~~a~~~~~~~~~~ 336 (586)
+.++....+..+.+.
T Consensus 264 ~~~~~~~fL~~~~~~ 278 (389)
T COG2956 264 KPAEGLNFLRRAMET 278 (389)
T ss_pred CHHHHHHHHHHHHHc
Confidence 666655555555544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-09 Score=106.58 Aligned_cols=390 Identities=12% Similarity=0.030 Sum_probs=261.5
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC--C--CCh-hH
Q 007871 140 KMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP--Q--KDA-IS 211 (586)
Q Consensus 140 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~--~~~-~~ 211 (586)
...+.-|..+|..|.-+..++|++..+-+.|++... .....|+.+...|...|.-..|..+++.-. . |+. ..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 334566888999999999999999999999987654 355679999999999999999999998877 2 433 33
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhCCC--------CChhHHHHHHHHHHhcC-----------CHHHHHHHHhhCCC---
Q 007871 212 WSIMIDGYRKKKGDISSARILFEHMPI--------KDLISWNSMIDGYAKIG-----------DLVAAQQLFNEMPE--- 269 (586)
Q Consensus 212 ~~~ll~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~--- 269 (586)
+-..-..|..+.+.++++..+-.+... -.+..|..+.-+|...- ...++.+.+++..+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 444444554566777777766444332 14455555555554321 23456667776643
Q ss_pred CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHc-CCCCchhHHHHH
Q 007871 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS-RITMDMIVQTAL 348 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 348 (586)
.|+.+...+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++..|+.+.+...+. |..... ...-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l--~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVL--MDGK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhh--chhh
Confidence 2333322333446677889999999999998866778888888888888999999999888765433 211000 0000
Q ss_pred HHHHHhcCCHHHHHHHHhccCC-------------------------------C-CHhHHHHHHHHHHh---cCChHHHH
Q 007871 349 IDMYMKCGSLDEARRIFYSMTK-------------------------------K-NVISYNVMIAGLGM---NGFGEEAL 393 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~-------------------------------~-~~~~~~~l~~~~~~---~~~~~~A~ 393 (586)
+..-...++.+++......+.. . .+.++..+...... .-..+..
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 1111123444444333222210 0 11111111111110 0011111
Q ss_pred HHHHHHHHCCCCCCH--------HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 007871 394 KCFAQMETEGIPKDD--------LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465 (586)
Q Consensus 394 ~~~~~m~~~g~~p~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 465 (586)
|...-+.|.+ ..|......+...+..++|...+.+..+ ..+.....|...+..+...|.+++|.+
T Consensus 633 -----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 633 -----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred -----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 1111112221 2345566678889999999999998877 566678888888899999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 466 IVESM-PMKP-NLALWGTLLLACRNHQNVTLAEV--VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 466 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.|... ...| ++.+...+...+...|+-.-|.. ++..+.+.+|.++.+|..++.++.+.|+.++|.+.|....+.
T Consensus 706 af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 706 AFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 98876 4556 67888899999999998888888 999999999999999999999999999999999999987654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-09 Score=95.68 Aligned_cols=214 Identities=14% Similarity=0.191 Sum_probs=98.6
Q ss_pred CCChhHHHHHHhhCCCCChhHHH---HHHHHHhhccCCHHHHHHHHHhCCCC-Ch------hHHHHHHHHHHhcCCHHHH
Q 007871 191 CGEMGKAREVFDEMPQKDAISWS---IMIDGYRKKKGDISSARILFEHMPIK-DL------ISWNSMIDGYAKIGDLVAA 260 (586)
Q Consensus 191 ~g~~~~A~~~~~~~~~~~~~~~~---~ll~~~~~~~g~~~~a~~~~~~~~~~-~~------~~~~~l~~~~~~~g~~~~A 260 (586)
..+.++|.++|-+|.+-|..|+. ++-+.+ .++|.+|.|+++.+.+... |. .+.-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLf-RsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLF-RSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 45677777777777644444332 233344 6666666666666555422 11 1223334444555555555
Q ss_pred HHHHhhCCCCC---hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcC
Q 007871 261 QQLFNEMPERN---VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSR 337 (586)
Q Consensus 261 ~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (586)
+.+|..+.+.+ ..+...|+..|.+..+|++|+++-+++.+.+-.+...-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 55555554421 223334444555555555555555544443322221110
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 007871 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGV 414 (586)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 414 (586)
...|.-+...+....+++.|..++.+..+ ..+..--.+...+...|+++.|.+.|+...+.+..--+.+...|
T Consensus 180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 180 ----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 01222233333333444444444444432 12223333344455555555555555555553222222344455
Q ss_pred HHHhhccCCHHHHHHHHHHhHH
Q 007871 415 LIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
..+|...|+.++....+..+.+
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555555555555555544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.3e-10 Score=110.44 Aligned_cols=240 Identities=17% Similarity=0.123 Sum_probs=146.8
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHhccCChhHHHHHHHHHHHc-----CC-CC
Q 007871 274 SWSIMIDGYAQHGNPKEALYLFREMLCQ-----G-VRPDVIS-VMGAISACAQVGALDLGKWIHVFMKRS-----RI-TM 340 (586)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~ 340 (586)
+...+...|...|+++.|..+++..++. | ..|...+ .+.+...|...+++++|..+|+.+... |- .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344666677777777777777666543 1 0111111 112333444555555555555444322 10 01
Q ss_pred -chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH-HHHHHHHHH
Q 007871 341 -DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP-KDD-LIFLGVLIA 417 (586)
Q Consensus 341 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~-~~~~~l~~~ 417 (586)
-..+++.|..+|.+.|++++|...+ +.|++++++ ..|.. |.. ..++.+...
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~------------------------e~Al~I~~~--~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYC------------------------ERALEIYEK--LLGASHPEVAAQLSELAAI 334 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHH------------------------HHHHHHHHH--hhccChHHHHHHHHHHHHH
Confidence 1123444444555555555555444 233333333 11222 222 246666677
Q ss_pred hhccCCHHHHHHHHHHhHHhhC--CCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHCG--IEP----KLEHYSCLVDLLSRAGELEQALNIVESM---------PMKP-NLALWGT 481 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~ 481 (586)
|...+++++|..+++...+... +.+ -..+++.|...|...|++++|.++++++ +..+ ....++.
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~ 414 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQ 414 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHH
Confidence 8888888888888887665322 222 2467889999999999999999999876 1122 2456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc----CCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVEL----KADD---CGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...|.+.+.+.+|..+|.+...+ +|++ ...|..|+.+|.+.|++++|.++.+.....
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 888899999999999999887763 4544 456888999999999999999999888643
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.6e-09 Score=91.65 Aligned_cols=432 Identities=12% Similarity=0.031 Sum_probs=251.4
Q ss_pred CChHHHHHHHhccCCC---CcchHHH-HHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHH
Q 007871 60 LNMDQAERLFNQIYQP---NTYMHNT-MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIH 135 (586)
Q Consensus 60 ~~~~~A~~~~~~~~~~---~~~~~~~-ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 135 (586)
.|+..|+.+++.-... .....+. +...+.+.|++++|+..+..+.+. -.++...+..|.-+..-.|.+.+|..+.
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5788888887654211 1112222 345567889999999999988774 3566666666666666677888887765
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCChhHHH
Q 007871 136 GEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKDAISWS 213 (586)
Q Consensus 136 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~ 213 (586)
... +.++..-..|+....+.|+-++-...-+.+.+.. .---++.+.....-.+.+|+++|.+.. .|+-...+
T Consensus 115 ~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 115 EKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred hhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 432 2233344455566667777666665555544322 223344555555567889999999888 56667777
Q ss_pred HHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhC-----
Q 007871 214 IMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH----- 285 (586)
Q Consensus 214 ~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~----- 285 (586)
.-+..|..+.+-++-+.++++... +.+..+.|....-..+.-.-..|.+-...+.+.-...|- .+.-.++.
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l~rHNLVvF 267 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYLCRHNLVVF 267 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHHHHcCeEEE
Confidence 777777678888888877766544 334444554444433322211222211221110000011 11112221
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-------CH
Q 007871 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG-------SL 358 (586)
Q Consensus 286 ~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~ 358 (586)
.+-+.|++++-.+.+. .|.. -..++--|.+.+++.+|..+.+++. +.++.-|-.-.-.++..| .+
T Consensus 268 rngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 268 RNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred eCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 2345666666665543 3332 2234455677777777777665432 112222211111222222 34
Q ss_pred HHHHHHHhccCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007871 359 DEARRIFYSMTK-----KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433 (586)
Q Consensus 359 ~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (586)
.-|...|+-+.. ..+.--.++...+.-..++++++..+.....- +..|...-..+..+++..|++.+|+++|-+
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhh
Confidence 456666665442 23334455666666667788888888877764 333444444577788888899999988887
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLL-LACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
+.. ..++.+..-...|.++|.+.++++.|.+++-++..+.+..+...++ .-|.+.+++--|-+.|+.+..++|..
T Consensus 419 is~-~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 419 ISG-PEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred hcC-hhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 755 2333344444456788889999999988888875444444444444 34888888888888888887777653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-10 Score=100.83 Aligned_cols=225 Identities=11% Similarity=-0.010 Sum_probs=155.6
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCC
Q 007871 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNVMIAGLGMNGF 388 (586)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 388 (586)
.+..+|.+.|-+.+|+..++...+. .|-+.+|..|..+|.+..+.+.|+.++.+-.+ | ++....-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4445555555555555555554444 23344455555666666666666666655543 3 22233334555666677
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 468 (586)
.++|.++|+...+. .+.+......+...|.-.++++.|+.+++++.. .|. .+++.|..+.-+|...+++|-++.-|+
T Consensus 306 ~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 77777777777663 233445555666667777778888888888777 454 456777778778878888888777777
Q ss_pred hCC---CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 469 SMP---MKP--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 469 ~~~---~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
+.. ..| ....|..+.......||+..|.+.|+-++..+|++...++.|+-.-.+.|+.++|..+++.......
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 651 223 3577888888888899999999999999999999999999999999999999999999988876543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-09 Score=112.18 Aligned_cols=243 Identities=12% Similarity=0.014 Sum_probs=175.3
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---------ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 007871 287 NPKEALYLFREMLCQGVRPDVISVMGAISACA---------QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS 357 (586)
Q Consensus 287 ~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 357 (586)
++++|...|++..+.. +-+...+..+..++. ..++.++|...++.+.+.+ +.+...+..+..++...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 4578888898888753 223444544444332 2345788999999988876 4466778888888899999
Q ss_pred HHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHH
Q 007871 358 LDEARRIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGYRIFQS 433 (586)
Q Consensus 358 ~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 433 (586)
+++|...|++..+ | +...+..+...+...|++++|+..+++..+ ..|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999998763 3 466788888999999999999999999988 455532 333444456668999999999999
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcC---CC
Q 007871 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLAL-WGTLLLACRNHQNVTLAEVVVEGLVELK---AD 508 (586)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~ 508 (586)
+... ..+.++..+..+..+|...|++++|...+.++ +..|+... .+.+...+...| ++|...++++.+.. |.
T Consensus 432 ~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 432 LRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 8772 22335566778889999999999999999887 34454433 444555567666 47888777777643 44
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 509 DCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 509 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
++.. ...+|.-.|+-+.+..+ +++.+.|
T Consensus 509 ~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 509 NPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred CchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4433 66667778887777777 7776654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.4e-08 Score=99.61 Aligned_cols=262 Identities=13% Similarity=0.144 Sum_probs=183.1
Q ss_pred HHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc----CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHh
Q 007871 30 QILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI----YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKR 105 (586)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~ 105 (586)
..+..+...|+.|+-.||..++. .|+.. |+.+.|- +|.-| .+-+...++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLia-rYc~~-gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIA-RYCTK-GDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHH-HHccc-CCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence 46777888899999999999999 89999 9999998 88887 2335567899999988888887776
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhhHHH
Q 007871 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE--IKDLVSWNL 183 (586)
Q Consensus 106 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ 183 (586)
.|-..||..|..+|...||+..-..+-+.|.. +...+...|--.....++..+. ......-..
T Consensus 80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~------------i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLES------------INQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHH------------HHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 68889999999999999998873333222322 3333444444444444443321 111222233
Q ss_pred HHHHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHH
Q 007871 184 VLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMPI-KDLISWNSMIDGYAKIGDLVAA 260 (586)
Q Consensus 184 l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 260 (586)
.+...+-.|-++.+++++..+. ..+. ++..++..+-.....+++-..+.+.... ++..++.+++..-.-.|+++.|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~A 223 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGA 223 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhH
Confidence 4555666777888888887776 2222 2222355442334455665555555554 7999999999999999999999
Q ss_pred HHHHhhCCCC----ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007871 261 QQLFNEMPER----NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321 (586)
Q Consensus 261 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 321 (586)
..++.+|.+. +..-|..|+.+ .++...+..+++-|...|+.|+..|+...+..+...|
T Consensus 224 k~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 224 KNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 9999999863 22223334333 7888899999999999999999999888777766643
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2e-07 Score=89.92 Aligned_cols=480 Identities=12% Similarity=0.114 Sum_probs=244.8
Q ss_pred hccCCCCChHHHHHHHhcc-----CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCc
Q 007871 54 LTSPNTLNMDQAERLFNQI-----YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGL 128 (586)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 128 (586)
....+ |++..-++.|++. .......|...+.-....+-++-++.+|++.++- ++..-+--|..++..+++
T Consensus 111 ~l~~Q-~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~ 185 (835)
T KOG2047|consen 111 FLIKQ-GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRL 185 (835)
T ss_pred HHHhc-chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccch
Confidence 33444 5555555555443 1122334555555444555555555555555442 122233444445555555
Q ss_pred hHHHHHHHHHHHh------CCCCchhHHHHHHHHHHhcCCh---hHHHHHhccCCCC--C--hhhHHHHHHHHHhCCChh
Q 007871 129 VEGTEIHGEVVKM------GFLCDVFVVNGLIGMYSKCGHM---GCARSVFEGSEIK--D--LVSWNLVLRGFVECGEMG 195 (586)
Q Consensus 129 ~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~--~--~~~~~~l~~~~~~~g~~~ 195 (586)
++|.+.+...+.. ..+.+...|..+....++..+. -....++..+... | ...|+.|..-|++.|.++
T Consensus 186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~e 265 (835)
T KOG2047|consen 186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFE 265 (835)
T ss_pred HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhH
Confidence 5555555444321 1122333344433333332221 1122222222221 1 245888888888888888
Q ss_pred HHHHHHhhCC--CCChhHHHHHHHHHh---------------hccCC------HHHHHHHHHhCCCC-------------
Q 007871 196 KAREVFDEMP--QKDAISWSIMIDGYR---------------KKKGD------ISSARILFEHMPIK------------- 239 (586)
Q Consensus 196 ~A~~~~~~~~--~~~~~~~~~ll~~~~---------------~~~g~------~~~a~~~~~~~~~~------------- 239 (586)
+|..+|++.. .-....|..+.++|. ...|+ ++-...-|+.+...
T Consensus 266 karDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn 345 (835)
T KOG2047|consen 266 KARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN 345 (835)
T ss_pred HHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence 8888887766 222223333333330 01111 11122223332211
Q ss_pred --ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---C------ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC--
Q 007871 240 --DLISWNSMIDGYAKIGDLVAAQQLFNEMPE---R------NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD-- 306 (586)
Q Consensus 240 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~-- 306 (586)
++..|..-+. ...|+..+-...|.+... | -...|..+...|-..|+.+.|..+|++..+-..+--
T Consensus 346 ~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~d 423 (835)
T KOG2047|consen 346 PHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVED 423 (835)
T ss_pred CccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHH
Confidence 1222222222 123444444444444321 1 124566677777777777777777777765432211
Q ss_pred -HHHHHHHHHHHhccCChhHHHHHHHHHHHcCCC-----------C------chhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 307 -VISVMGAISACAQVGALDLGKWIHVFMKRSRIT-----------M------DMIVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 307 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
..+|......-.+..+++.|..+++......-. + +..+|...++.--..|-++....+++.+
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 123333334444556666676666554322111 1 1223444444444556666666666666
Q ss_pred CCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhh---ccCCHHHHHHHHHHhHHhhCCC
Q 007871 369 TKK---NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACS---HSGLATEGYRIFQSMKRHCGIE 441 (586)
Q Consensus 369 ~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~ 441 (586)
.+- .+..-......+-.+.-++++.+.|++-+..=-.|+. ..|+..+.-+. .....+.|..+|+++.+ +.+
T Consensus 504 idLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cp 581 (835)
T KOG2047|consen 504 IDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCP 581 (835)
T ss_pred HHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCC
Confidence 532 2211111222233455567777777765554334444 34555554442 23468899999999998 777
Q ss_pred CCh--HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc--hH
Q 007871 442 PKL--EHYSCLVDLLSRAGELEQALNIVESMPMKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG--LY 513 (586)
Q Consensus 442 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~--~~ 513 (586)
|.. ..|......-.+-|....|+.+++++...-. ...|+..+.-....=-...-..+|+++++.-|++.. .-
T Consensus 582 p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mc 661 (835)
T KOG2047|consen 582 PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMC 661 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHH
Confidence 643 2333344444566888899999998843322 345565555444333455567888888887666432 34
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 514 VLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 514 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
...++.-.+.|..+.|+.+|.-..+..-+
T Consensus 662 lrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 662 LRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 44677788999999999999776655433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=101.88 Aligned_cols=235 Identities=13% Similarity=0.091 Sum_probs=191.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 007871 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355 (586)
Q Consensus 276 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 355 (586)
+.+..+|.+.|.+.+|.+.|+..++. .|-+.||..+-..|.+..++..|..++.+-.+. ++.++.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56778888889999999888888876 667778888888899988998888888877665 244555555677778888
Q ss_pred CCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 007871 356 GSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432 (586)
Q Consensus 356 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (586)
++.++|.++++...+ .++.+..++...|.-.++++-|+..|+++.+.|+ .++..|+.+.-+|...+++|-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 899999999988775 3566666777788899999999999999999885 467788899999999999999999999
Q ss_pred HhHHhhCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 433 SMKRHCGIEPK--LEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 433 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
+.... --.|+ ...|-.+.......|++..|...|+-. ....+...++.|...-.+.|+++.|..++..+....|.
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98873 34344 467888999999999999999999877 33346788999988889999999999999999999887
Q ss_pred CcchHHH
Q 007871 509 DCGLYVL 515 (586)
Q Consensus 509 ~~~~~~~ 515 (586)
-......
T Consensus 462 m~E~~~N 468 (478)
T KOG1129|consen 462 MAEVTTN 468 (478)
T ss_pred ccccccc
Confidence 5544333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-09 Score=97.48 Aligned_cols=199 Identities=15% Similarity=0.032 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (586)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------------- 96 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP------------- 96 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------
Confidence 3455556666666666666666666665542 22344444455555555555555555555544431
Q ss_pred HHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHH
Q 007871 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRI 430 (586)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 430 (586)
.+...+..+...+...|++++|...+++.......| ....+..+..++...|++++|...
T Consensus 97 -------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 97 -------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred -------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 222334444444555555555555555554421111 223444455556666666666666
Q ss_pred HHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007871 431 FQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-M-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 505 (586)
+.+... ..+.+...+..++..+...|++++|...+++.. . +++...+..+...+...|+.+.|..+.+.+...
T Consensus 158 ~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666655 223344555566666666666666666665541 1 223444444555556666666666666655443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.5e-10 Score=93.03 Aligned_cols=162 Identities=15% Similarity=0.020 Sum_probs=109.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 376 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
...|.-.|...|+...|..-+++.++ ..|+. .++..+...|.+.|+.+.|.+.|+...+ --+.+..+.|..+.-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 34455567777777777777777766 34443 4666666677777777777777777766 3344566677777777
Q ss_pred hhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 007871 455 SRAGELEQALNIVESMPMKP----NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 530 (586)
|..|++++|...|++.-..| ...+|..+..+..+.|+.+.|...|++.++.+|+.+.....++....+.|++..|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 77777777777777663333 24566666666667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCC
Q 007871 531 RIRKMMRKRKI 541 (586)
Q Consensus 531 ~~~~~m~~~~~ 541 (586)
.++++....+.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 77777665544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.8e-08 Score=87.16 Aligned_cols=271 Identities=9% Similarity=-0.043 Sum_probs=194.7
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHH---HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007871 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSW---SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314 (586)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 314 (586)
+.|+.....+...+...|+..+|+..|++...-|+.+. ....-.+...|+++....+...+.... .-+...|..-.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 45788888899999999999999999988775443322 222333456788888777777766432 12233333334
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC--C-CCHhHHHHHHHHHHhcCChHH
Q 007871 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT--K-KNVISYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~ 391 (586)
.......++..|..+-+..++.+ +.+...+-.-..++...|+.++|.-.|+... . .+...|..|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 44456677888888877777664 2234444444566778889999888887665 3 477889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHhhc-cCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVL-IACSH-SGLATEGYRIFQSMKRHCGIEP-KLEHYSCLVDLLSRAGELEQALNIVE 468 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 468 (586)
|..+-+..... ++.+..+...+. ..|.. ..--++|.++++...+ +.| -....+.+...+...|..++++.+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 98887776653 455666776663 44433 3345778888887766 344 45677788888899999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHH
Q 007871 469 SM-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 469 ~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
+. ...||...-+.+...+...+.+++|...|..++.++|++.....
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~ 509 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLR 509 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHH
Confidence 77 56688888888999999999999999999999999998775443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-09 Score=109.90 Aligned_cols=212 Identities=11% Similarity=-0.027 Sum_probs=165.4
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh---------cCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCC
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK---------CGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGF 388 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 388 (586)
++.++|...++...+... .+...+..+..+|.. .+++++|...+++..+ .+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 346789999999888753 244556666655442 3458899999988774 466788888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (586)
+++|+..|++..+. .|+ ...+..+..++...|++++|...++++.+. .+.+...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999984 555 567888888999999999999999999882 2233334444555677789999999999
Q ss_pred HhCC--CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 468 ESMP--MKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 468 ~~~~--~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
++.. ..| ++..+..+..++...|++++|...++++....|.+......++..|...| +.|...++.+.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 8872 235 34556677777889999999999999998888988888999999999888 4888888887654
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.4e-11 Score=80.35 Aligned_cols=50 Identities=30% Similarity=0.609 Sum_probs=40.6
Q ss_pred CCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhc
Q 007871 75 PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGV 124 (586)
Q Consensus 75 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 124 (586)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888887764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-08 Score=89.19 Aligned_cols=445 Identities=10% Similarity=-0.021 Sum_probs=235.6
Q ss_pred HHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 007871 84 IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM 163 (586)
Q Consensus 84 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 163 (586)
+.-+....++..|+.+++--...+-+-...+-.-+..++.+.|++++|...+..+... -.++...+.-|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 5666667777777777776554332212222233344556677777777777766653 244555555555555666667
Q ss_pred hHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCCh--
Q 007871 164 GCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDL-- 241 (586)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~-- 241 (586)
.+|..+-...+. ++..-..+.....+.++-++-..+-+.+.+..... -++...- -.+-.+++|++++++....++
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~Edq-LSLAsvh-YmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQ-LSLASVH-YMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHH-HhHHHHH-HHHHHHHHHHHHHHHHHhcChhh
Confidence 777666554432 22233334444445555555555444443111111 1111111 122345555555555553322
Q ss_pred hHHHH-HHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH-HHHH
Q 007871 242 ISWNS-MIDGYAKIGDLVAAQQLFNEMPE--RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG-AISA 316 (586)
Q Consensus 242 ~~~~~-l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~-l~~~ 316 (586)
...|. +.-+|.+..-++-+.++++.-.+ || +.+-|.......+.=+-..|.+-.+++...+-.. .-+.. +++.
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~--~~f~~~l~rH 262 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE--YPFIEYLCRH 262 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--chhHHHHHHc
Confidence 12222 22334444444444444443332 22 2333333333333222233333333333332111 00100 0000
Q ss_pred -HhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcC-------C
Q 007871 317 -CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNG-------F 388 (586)
Q Consensus 317 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-------~ 388 (586)
+.--.+-+.|.+++--+.+. -| ..-..|+-.|.+.+++.+|..+.+++...++.-|-.-.-.++..| .
T Consensus 263 NLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreH 338 (557)
T KOG3785|consen 263 NLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREH 338 (557)
T ss_pred CeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHH
Confidence 01112334455544333322 11 223346667889999999999999988655544433333333333 3
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (586)
..-|.+.|+-.-+.+..-|.. .-.++..++.-..++++.+.+++.+.. +-...|.. --.+..+++..|++.+|+++|
T Consensus 339 lKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~F-n~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 339 LKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDF-NLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchh-hhHHHHHHHHhcChHHHHHHH
Confidence 344555555444444443332 234555566667789999999998888 33333443 445889999999999999999
Q ss_pred HhCCCC--CCHHHHHH-HHHHHHhcCChHHHHHHHHHHHhcC-CC-CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 468 ESMPMK--PNLALWGT-LLLACRNHQNVTLAEVVVEGLVELK-AD-DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 468 ~~~~~~--p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
-.+... .+..+|.. +..+|...+..+.|-.+ +++.+ |. ........+..|.+.|.+=-|...|+.+......
T Consensus 417 ~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 417 IRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred hhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 887321 34555654 55567888888877554 45554 33 3344556678899999999899999888776554
Q ss_pred c
Q 007871 543 K 543 (586)
Q Consensus 543 ~ 543 (586)
|
T Consensus 494 p 494 (557)
T KOG3785|consen 494 P 494 (557)
T ss_pred c
Confidence 4
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-09 Score=100.32 Aligned_cols=227 Identities=10% Similarity=-0.049 Sum_probs=127.0
Q ss_pred CCCchHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 007871 285 HGNPKEALYLFREMLCQG-VRPD--VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361 (586)
Q Consensus 285 ~~~~~~A~~~~~~m~~~g-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 361 (586)
.+..+.++..+.+++... ..|+ ...|......+...|+.+.|...|+...+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 455666777777776532 1222 2345556666677777777777777777664 33556677777777777777777
Q ss_pred HHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhh
Q 007871 362 RRIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438 (586)
Q Consensus 362 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 438 (586)
...|+...+ | +..+|..+...+...|++++|++.+++... ..|+..........+...++.++|...+.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 777776653 3 345666666677777777777777777766 344432111112223345667777777765544
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHH--HHHHHHhC-CCC----C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CC
Q 007871 439 GIEPKLEHYSCLVDLLSRAGELEQ--ALNIVESM-PMK----P-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKA-DD 509 (586)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~~----p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~ 509 (586)
...++...+ .+.. ...|+... +.+.+.+. ... | ....|..+...+...|++++|+..|+++.+.+| +.
T Consensus 194 ~~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 194 KLDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred hCCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 222322211 2222 22343322 23222221 111 1 234566666777777777777777777777775 33
Q ss_pred cchHHHHHHH
Q 007871 510 CGLYVLLSNI 519 (586)
Q Consensus 510 ~~~~~~l~~~ 519 (586)
+.....++..
T Consensus 271 ~e~~~~~~e~ 280 (296)
T PRK11189 271 VEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHH
Confidence 3333434433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.7e-11 Score=77.17 Aligned_cols=50 Identities=32% Similarity=0.573 Sum_probs=45.0
Q ss_pred CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 007871 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ 319 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~ 319 (586)
||+.+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988864
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-07 Score=89.21 Aligned_cols=409 Identities=12% Similarity=0.063 Sum_probs=220.6
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC---ChhhHHHHHHHHHhCCChhHHHHHH
Q 007871 125 LMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK---DLVSWNLVLRGFVECGEMGKAREVF 201 (586)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~ 201 (586)
.+.+....+..+.+.+ +.+.-..+.....-.+...|+.++|.+........ +.+.|..+.-.+....++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3444444555555444 22333334443333444556666666666544432 4456666666666667777777777
Q ss_pred hhCC--CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC
Q 007871 202 DEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE-----RN 271 (586)
Q Consensus 202 ~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~ 271 (586)
.... .||....--=+..+..+.|+++.......... +.....|..+..++.-.|+...|..+++...+ ++
T Consensus 99 ~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s 178 (700)
T KOG1156|consen 99 RNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPS 178 (700)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 6665 33332221112222245555555555543333 22445566666677777777777777666542 33
Q ss_pred hhHHHHH------HHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChhHHHHHHHHHHHcCCCCchhH
Q 007871 272 VFSWSIM------IDGYAQHGNPKEALYLFREMLCQGVRPDVISV-MGAISACAQVGALDLGKWIHVFMKRSRITMDMIV 344 (586)
Q Consensus 272 ~~~~~~l------~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 344 (586)
...+... .......|.++.|++.+.+-... ..|...+ .+-...+.+.+++++|..++..++... ||..-
T Consensus 179 ~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~ 254 (700)
T KOG1156|consen 179 KEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLD 254 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHH
Confidence 3333221 23445667777777766654432 2233222 234445667778888888887777764 44443
Q ss_pred H-HHHHHHHHhcCCHHHHH-HHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 007871 345 Q-TALIDMYMKCGSLDEAR-RIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419 (586)
Q Consensus 345 ~-~~l~~~~~~~g~~~~a~-~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 419 (586)
| ..+..++.+-.+.-++. .+|....+ | ....-..-+....-..-.+..-.++..+.+.|+++-...+..+-.
T Consensus 255 Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk--- 331 (700)
T KOG1156|consen 255 YYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK--- 331 (700)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---
Confidence 3 33444443222323333 45544432 1 000000001111112223444556667777776654433333321
Q ss_pred ccCCHHHHHHHHHHhHH---hhC----------CCCChHHH--HHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 007871 420 HSGLATEGYRIFQSMKR---HCG----------IEPKLEHY--SCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTL 482 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~---~~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l 482 (586)
.-...+-..++.-.+.. ..| -+|....| -.++..+-+.|+++.|..+++.. .-.|+ +..|..-
T Consensus 332 ~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~K 411 (700)
T KOG1156|consen 332 DPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVK 411 (700)
T ss_pred chhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHH
Confidence 11111111111111111 000 14444433 34677788899999999999877 33454 3445455
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 483 LLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 483 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
.+.+...|++++|..+++++.+++-.|..+-..-+.-..++++.++|.++.-...+.|.
T Consensus 412 aRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 412 ARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 56688889999999999999999888877777788888899999999999888877765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.8e-07 Score=82.80 Aligned_cols=386 Identities=12% Similarity=0.020 Sum_probs=230.3
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCC-ChhhHHHHHHHHHhCC-ChhHHHHHHhhCCCCChhHHHHHHHHHhhcc
Q 007871 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIK-DLVSWNLVLRGFVECG-EMGKAREVFDEMPQKDAISWSIMIDGYRKKK 223 (586)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 223 (586)
+...-...+.+|-..++.+.|..++.+++.. ...-.+.++..+.+.| +..++.--+......-+.....+...+.-.-
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 4455666778888888888888888777654 3333444444443333 2222222222221111111111111110000
Q ss_pred CCHHHHHHHHHhCC-CCChhHHHHHHH--HHHhcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHhCCCchHHHHHH
Q 007871 224 GDISSARILFEHMP-IKDLISWNSMID--GYAKIGDLVAAQQLFNEMP-----ERNVFSWSIMIDGYAQHGNPKEALYLF 295 (586)
Q Consensus 224 g~~~~a~~~~~~~~-~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~ 295 (586)
...+.+-.....+. .+........+. +.+-.++...|...+-.+. ..|+.....+...+...|+.+.|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 11111111111111 122222222222 2333444444443333222 256777888888899999999999999
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---C
Q 007871 296 REMLCQGVRPDVIS-VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---K 371 (586)
Q Consensus 296 ~~m~~~g~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~ 371 (586)
++.+.. .|+..+ .....-.+.+.|+.+....+...+.... .-+...|-.-.......++++.|+.+-++..+ .
T Consensus 256 e~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r 332 (564)
T KOG1174|consen 256 SSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR 332 (564)
T ss_pred HHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc
Confidence 887754 343322 1222223456677777766666654432 11222222223333456778888888877664 3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 007871 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 450 (586)
++..+-.-...+...|++++|.-.|+..+. +.| +..+|..|+.+|...|.+.+|.-.-+...+ -++.+..+...+
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLF 408 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhhhhhh
Confidence 445555555678888999999999998877 565 457899999999999999999888888777 455666666555
Q ss_pred H-HHHhh-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 007871 451 V-DLLSR-AGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526 (586)
Q Consensus 451 ~-~~~~~-~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 526 (586)
+ ..+.- -..-++|.+++++. ...|+ ....+.+...|...|.+++++.++++.+...|++ .....|++++...+.+
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEP 487 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhH
Confidence 3 33322 22347888888876 56675 4455666677888999999999999988876654 4788899999999999
Q ss_pred hHHHHHHHHHHhC
Q 007871 527 EHALRIRKMMRKR 539 (586)
Q Consensus 527 ~~A~~~~~~m~~~ 539 (586)
.+|.+.|....+.
T Consensus 488 Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 488 QKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998887654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-06 Score=85.55 Aligned_cols=400 Identities=13% Similarity=0.049 Sum_probs=253.3
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC----C-Chhh
Q 007871 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI----K-DLVS 180 (586)
Q Consensus 106 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~----~-~~~~ 180 (586)
..++-|...|..+--++.+.|++..+.+.|++....- -.....|..+...|..+|.-..|..+++.... | |+..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3355677788888888888899999999998877633 33556788888889999998899988876543 2 3334
Q ss_pred HHHHHHHHHh-CCChhHHHHHHhhCC--------CCChhHHHHHHHHHh---hcc-------CCHHHHHHHHHhCC---C
Q 007871 181 WNLVLRGFVE-CGEMGKAREVFDEMP--------QKDAISWSIMIDGYR---KKK-------GDISSARILFEHMP---I 238 (586)
Q Consensus 181 ~~~l~~~~~~-~g~~~~A~~~~~~~~--------~~~~~~~~~ll~~~~---~~~-------g~~~~a~~~~~~~~---~ 238 (586)
+-..-..|.+ -|..++++.+..+.. .-....+..+.-+|. ... ....++.+.+++.. +
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 4433444443 356666665555444 112222322222220 111 12344555566663 3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC-HHHHHHH
Q 007871 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPE----RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD-VISVMGA 313 (586)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~-~~~~~~l 313 (586)
.|+.+...+.--|+..++++.|.+...+..+ .+...|..+.-.+...+++.+|+.+.+..... .|+ ......-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhh
Confidence 3666655666667888899999888877654 56788888888888999999999999887753 111 1111111
Q ss_pred HHHHhccCChhHHHHHHHHHHH---------------------cCC-------CCchhHHHHHHHHHHhcCC---HHHHH
Q 007871 314 ISACAQVGALDLGKWIHVFMKR---------------------SRI-------TMDMIVQTALIDMYMKCGS---LDEAR 362 (586)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~~~~---------------------~~~-------~~~~~~~~~l~~~~~~~g~---~~~a~ 362 (586)
+..-...++.+++......+.. .|. .....++..+.......+. .+..+
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 1111223333333322221110 111 1112233322222211111 11111
Q ss_pred HHHhccCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 363 RIFYSMTKKN------VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 363 ~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
..+.....|+ ...|......+.+.++.++|...+.+.... .+-....|......+...|.+.+|.+.|.....
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ 712 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA 712 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence 1111111232 234666677788999999999888888773 334456777777888889999999999998876
Q ss_pred hhCCCCChHHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 437 HCGIEPKLEHYSCLVDLLSRAGELEQALN--IVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
-.|.++.+..+++.++...|+..-|.. ++..+ ...| +...|..+...+.+.|+.+.|...|..+.++.+.+|.
T Consensus 713 --ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 713 --LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred --cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 344567889999999999998887777 77766 5555 7899999999999999999999999999999877663
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-08 Score=92.80 Aligned_cols=213 Identities=17% Similarity=0.109 Sum_probs=128.7
Q ss_pred ChhHHHHHHHHHHHcC-CCC--chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 007871 322 ALDLGKWIHVFMKRSR-ITM--DMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKC 395 (586)
Q Consensus 322 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 395 (586)
..+.+..-+..++... ..| ....|..+...|...|++++|...|++..+ .+...|+.+...+...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555432 111 234566667777788888888887776653 3566777788888888888888888
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 007871 396 FAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474 (586)
Q Consensus 396 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 474 (586)
|++..+ +.|+ ..++..+..++...|++++|.+.++...+. .|+..........+...+++++|.+.+.+.....
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 888777 4554 456677777777788888888888877762 2322212222223345667888888775542111
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH-------hcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLV-------ELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
+...|.. .......|+...+ ..++.+. +..|..+.+|..++.++.+.|++++|...|++..+.++
T Consensus 196 ~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1112221 1222334444433 2333333 34456667788888888888888888888887776554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-08 Score=84.29 Aligned_cols=192 Identities=13% Similarity=0.069 Sum_probs=153.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMTKK---NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSH 420 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 420 (586)
...|.-.|...|+...|..-+++..+. +..+|..+...|.+.|..+.|.+.|++..+ +.|+. ...|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 445667788889999999888888743 445788888888999999999999998888 45544 677777777888
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHH
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~ 498 (586)
.|.+++|.+.|++......+.--..+|..++-+..+.|+++.|.+.|++. ...| .+.....+.....+.|++..|..+
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 88999999999998886555556778889998899999999999999877 3333 466777788888889999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 499 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+++.....+.+...+...+++-.+.|+.+.|-++=..+.+
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999888888888888888888888988888777666544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-06 Score=81.61 Aligned_cols=210 Identities=11% Similarity=-0.011 Sum_probs=131.5
Q ss_pred cCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHH
Q 007871 23 KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSF 99 (586)
Q Consensus 23 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~ 99 (586)
++.....+..+.+.+.. |+..-.-++-+-.+... |+.++|....... ...+.+.|+++.-.+-...++++|+++
T Consensus 21 kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~l-g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCL-GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHhHHHHHHHHHHhC--CccchhHHhccchhhcc-cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 56667778888888743 44443334433123445 8999999998876 445667899999888888999999999
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC----
Q 007871 100 YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI---- 175 (586)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---- 175 (586)
|+.....+ +-|...+.-+.-.-+..|+++.....-.++.+.. +.....|..++.++.-.|+...|..+++....
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99998764 2355567666655567788888777777776632 22345778888888888999888888764432
Q ss_pred -CChhhHHHH------HHHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC
Q 007871 176 -KDLVSWNLV------LRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMP 237 (586)
Q Consensus 176 -~~~~~~~~l------~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~ 237 (586)
++...+... .......|..++|++.+..-. --|...+...-..+..+.+++++|..++..+.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 233222222 234455666666666665543 11222222222222244555555555555544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-06 Score=86.35 Aligned_cols=371 Identities=14% Similarity=0.090 Sum_probs=220.9
Q ss_pred ChhhHhHHHHH-hccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhC-C--------CCCCc
Q 007871 43 EPFTLSQLLMS-LTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRK-G--------LLVDN 112 (586)
Q Consensus 43 ~~~~~~~ll~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~-~--------~~~~~ 112 (586)
|+.|-..++.= +|..- |+.|.|.+-.+.+.. -..|..+.+.|.+.++.+-|.-.+-.|... | -.|+
T Consensus 725 d~~TRkaml~FSfyvti-G~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTI-GSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred CHHHHHhhhceeEEEEe-ccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 44444444431 56666 999999887766543 357999999999998888887777666321 1 1222
Q ss_pred ccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC-CChhhHHHHHHHHHhC
Q 007871 113 YTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDLVSWNLVLRGFVEC 191 (586)
Q Consensus 113 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~ 191 (586)
.+=..+.-.....|.+++|+.++.+-++ |..|=+.|-..|.+++|.++-+.-.. .-..+|......+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 2222222233467899999999988776 34455677889999999988754332 1234677777777788
Q ss_pred CChhHHHHHHhhCCCC-----------------------ChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHH
Q 007871 192 GEMGKAREVFDEMPQK-----------------------DAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMI 248 (586)
Q Consensus 192 g~~~~A~~~~~~~~~~-----------------------~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 248 (586)
++.+.|++.|++...| |...|......+ ...|+.+.|+.+|... ..|..++
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y~~A-----~D~fs~V 945 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFYSSA-----KDYFSMV 945 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHHHHh-----hhhhhhe
Confidence 8899999988876522 333333333333 6677777777777653 3466666
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----------
Q 007871 249 DGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC----------- 317 (586)
Q Consensus 249 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~----------- 317 (586)
+..|-+|+.++|-++-++- .|..+...+...|-..|++.+|..+|.+... |...|+.|
T Consensus 946 rI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred eeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHH
Confidence 7777777777777765554 3555666778888888888888888877652 22222222
Q ss_pred --hccC--ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC--------------CCCHhHHHHH
Q 007871 318 --AQVG--ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT--------------KKNVISYNVM 379 (586)
Q Consensus 318 --~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------~~~~~~~~~l 379 (586)
...+ +.-.|-.+|++. |.. ....+..|-+.|.+.+|+++--.-. ..|+...+..
T Consensus 1015 lal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 2222 222233333322 111 1223445667777777666522111 1355666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHH----------CCC----------------CCCH----HHHHHHHHHhhccCCHHHHHH
Q 007871 380 IAGLGMNGFGEEALKCFAQMET----------EGI----------------PKDD----LIFLGVLIACSHSGLATEGYR 429 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~----------~g~----------------~p~~----~~~~~l~~~~~~~g~~~~A~~ 429 (586)
...++...++++|..++-...+ .|+ .|+. ..+..+...|.++|.+..|-+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 6666666666666655433221 111 1222 245566667778888877776
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH
Q 007871 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461 (586)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 461 (586)
-|.+.-.+ ...++++.+.|+.+
T Consensus 1167 KfTQAGdK----------l~AMraLLKSGdt~ 1188 (1416)
T KOG3617|consen 1167 KFTQAGDK----------LSAMRALLKSGDTQ 1188 (1416)
T ss_pred HHhhhhhH----------HHHHHHHHhcCCcc
Confidence 66554331 12345566666655
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-06 Score=84.64 Aligned_cols=459 Identities=13% Similarity=0.127 Sum_probs=259.5
Q ss_pred HhHHHHHhccCCCCChHHHHHHHhccC--CCCcchHH----HHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHH
Q 007871 47 LSQLLMSLTSPNTLNMDQAERLFNQIY--QPNTYMHN----TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLK 120 (586)
Q Consensus 47 ~~~ll~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~----~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 120 (586)
...+.+ +|.++ |-+..|++.+..+. +...++-+ --+..|.-.-.++.++++++.|...+++.|..+...+..
T Consensus 609 ra~IAq-LCEKA-GL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQ-LCEKA-GLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHH-HHHhc-chHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344555 78888 88888888887772 11111111 113344555678899999999999888888887777777
Q ss_pred HHhccCCchHHHHHHHHHHHh-----------CCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC-------------
Q 007871 121 ACGVLMGLVEGTEIHGEVVKM-----------GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK------------- 176 (586)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------------- 176 (586)
-|...-..+...++|+..... ++..|+.+.-..|.+.++.|++.+..++.++-.--
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 776666666667777665432 35667778888899999999999998887543210
Q ss_pred ------------------Chhh------HHHHHHHHHhCCChhHHHHHHhhCC---------------CCChhHHHHHHH
Q 007871 177 ------------------DLVS------WNLVLRGFVECGEMGKAREVFDEMP---------------QKDAISWSIMID 217 (586)
Q Consensus 177 ------------------~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~---------------~~~~~~~~~ll~ 217 (586)
|... ....|..|++.=++.+.-.+...+. ........-+..
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~ 846 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVE 846 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHH
Confidence 1111 0112333333222211111111111 001111122223
Q ss_pred HHhhccCCHHHHHHHHHhCCC---CChhHHHHHHHH--------------------------------------------
Q 007871 218 GYRKKKGDISSARILFEHMPI---KDLISWNSMIDG-------------------------------------------- 250 (586)
Q Consensus 218 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~-------------------------------------------- 250 (586)
-+ .+++++.--...++.... .|+.++|+|...
T Consensus 847 Ev-EkRNRLklLlp~LE~~i~eG~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqc 925 (1666)
T KOG0985|consen 847 EV-EKRNRLKLLLPWLESLIQEGSQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQC 925 (1666)
T ss_pred HH-HhhhhHHHHHHHHHHHHhccCcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCC
Confidence 33 333443333333333321 133333333332
Q ss_pred --------------------HHhcCCHHHHHHHHhhCC-----------------CCChhHHHHHHHHHHhCCCchHHHH
Q 007871 251 --------------------YAKIGDLVAAQQLFNEMP-----------------ERNVFSWSIMIDGYAQHGNPKEALY 293 (586)
Q Consensus 251 --------------------~~~~g~~~~A~~~~~~~~-----------------~~~~~~~~~l~~~~~~~~~~~~A~~ 293 (586)
+.+..+.+--.+++.+-. ..|+...+.-+.++...+-+.+-++
T Consensus 926 D~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIE 1005 (1666)
T KOG0985|consen 926 DLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIE 1005 (1666)
T ss_pred cHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHH
Confidence 333333332222221110 0244444555566666666666666
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--
Q 007871 294 LFREMLCQGVRP-DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK-- 370 (586)
Q Consensus 294 ~~~~m~~~g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 370 (586)
++++..-..-.- .......++-.-+-..+..++..+.+++-..+. |+ +.......+-+++|..+|++...
T Consensus 1006 LLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~ 1078 (1666)
T KOG0985|consen 1006 LLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNV 1078 (1666)
T ss_pred HHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccH
Confidence 666655321110 111111111111112222333333333222210 11 11112222333444444433210
Q ss_pred -----------------------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 007871 371 -----------------------KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427 (586)
Q Consensus 371 -----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 427 (586)
..+..|+.+..+-.+.|...+|++-|-+ .-|+..|..++..+.+.|.|++-
T Consensus 1079 ~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1079 SAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHH
Confidence 2456799999999999999999887753 33667899999999999999999
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
.+++....++ .-.|... ..|+-+|++.+++.+-++++. -|+......+..-|...|.++.|.-+|...
T Consensus 1153 v~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----- 1220 (1666)
T KOG0985|consen 1153 VKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV----- 1220 (1666)
T ss_pred HHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-----
Confidence 9999888874 5566655 468899999999988777654 377777778888888889998888887644
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 508 DDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 508 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
.-|..|+..+...|.|..|...-++.
T Consensus 1221 ---SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1221 ---SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45777888888888888777655443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-06 Score=83.39 Aligned_cols=412 Identities=12% Similarity=0.055 Sum_probs=240.1
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChh--hHHHHHHHHHhCCChhH
Q 007871 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLV--SWNLVLRGFVECGEMGK 196 (586)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~ 196 (586)
++.+...+++++|.+...++...+ +.|...+..=+-+....+.+++|+.+.+.-...+.. -+-.-.-+..+.+..++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 444567789999999999999866 556667777778888999999999777654422111 11122234457899999
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHH-hcCCHHHHHHHHhhCCC---CCh
Q 007871 197 AREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYA-KIGDLVAAQQLFNEMPE---RNV 272 (586)
Q Consensus 197 A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~---~~~ 272 (586)
|+..++-..+-+..+...-...+ .+.|++++|..+|+.+.+.+...+...+.+-+ ..+-.-.+. +.+.... .+-
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvl-Yrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~e~sy 175 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVL-YRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVPEDSY 175 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCCcchH
Confidence 99999955444433443334444 78999999999999987554433333322211 111111221 3444443 233
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCC-------------CCCCHH-HHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQG-------------VRPDVI-SVMGAISACAQVGALDLGKWIHVFMKRSRI 338 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-------------~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (586)
..+......++..|++.+|+++++...+.+ +..+.. .-..+.-.+-..|+..+|..+|..+++...
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 333345567788999999999999983221 111111 122344556788999999999999988864
Q ss_pred CCch---hHHHHHHHHHHhcCCH-H-HHHHHHhccCCC--------------CHhHHH-HHHHHHHhcCChHHHHHHHHH
Q 007871 339 TMDM---IVQTALIDMYMKCGSL-D-EARRIFYSMTKK--------------NVISYN-VMIAGLGMNGFGEEALKCFAQ 398 (586)
Q Consensus 339 ~~~~---~~~~~l~~~~~~~g~~-~-~a~~~~~~~~~~--------------~~~~~~-~l~~~~~~~~~~~~A~~~~~~ 398 (586)
...+ ...|.|+.+ ..-.++ + .++..++..... .....| .++..| .+.-+.+.++...
T Consensus 256 ~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q~r~~~a~ 332 (652)
T KOG2376|consen 256 ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQVRELSAS 332 (652)
T ss_pred CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHh
Confidence 3221 222333322 111111 1 122222222211 111112 222222 2222333333322
Q ss_pred HHHCCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHhHHhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHH-------
Q 007871 399 METEGIPKDDLIFLGVLIACS--HSGLATEGYRIFQSMKRHCGIEPK-LEHYSCLVDLLSRAGELEQALNIVE------- 468 (586)
Q Consensus 399 m~~~g~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~------- 468 (586)
.. +..|.. .+..++..+. +...+..+..++..... +.+-+ ..+....+......|+++.|.+++.
T Consensus 333 lp--~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 333 LP--GMSPES-LFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred CC--ccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 21 233333 3444444332 22257778888887776 44444 4566667788899999999999998
Q ss_pred -hCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 469 -SMP-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL-------KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 469 -~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+. ....+.+...+...+.+.++.+.|..++.+++.. .+.--..+..++..-.+.|+-++|..+++++.+.
T Consensus 408 ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 408 SSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 332 2233445555666677777777777777777652 2222334555666677889999999999999885
Q ss_pred CC
Q 007871 540 KI 541 (586)
Q Consensus 540 ~~ 541 (586)
+.
T Consensus 488 n~ 489 (652)
T KOG2376|consen 488 NP 489 (652)
T ss_pred CC
Confidence 43
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.8e-07 Score=87.57 Aligned_cols=461 Identities=14% Similarity=0.108 Sum_probs=237.1
Q ss_pred cCchHHHHHHHHHHHc--------CCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCch
Q 007871 23 KTTTHILQILAQLTTN--------DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQ 94 (586)
Q Consensus 23 ~~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 94 (586)
|+...++.+++.+.-. |--.+.+-....+. +.. .++.+|+.+|-+-.. -..-|..|....+|+
T Consensus 504 ~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~la-il~---kkfk~ae~ifleqn~-----te~aigmy~~lhkwd 574 (1636)
T KOG3616|consen 504 GDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLA-ILE---KKFKEAEMIFLEQNA-----TEEAIGMYQELHKWD 574 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHH-HHH---hhhhHHHHHHHhccc-----HHHHHHHHHHHHhHH
Confidence 5555555555543221 11233333344444 443 458899988854321 223466677777888
Q ss_pred hHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhc--c
Q 007871 95 KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFE--G 172 (586)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~--~ 172 (586)
+|+.+-+. .|.+.-...-.+.++++...|.-+.|-++- . .+..+ .+-|..|.+.|.+..|..... +
T Consensus 575 e~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~----sdgd~-laaiqlyika~~p~~a~~~a~n~~ 642 (1636)
T KOG3616|consen 575 EAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK----E----SDGDG-LAAIQLYIKAGKPAKAARAALNDE 642 (1636)
T ss_pred HHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc----c----ccCcc-HHHHHHHHHcCCchHHHHhhcCHH
Confidence 88876543 222222222334455555666655554431 1 12222 235777888888877766542 2
Q ss_pred CCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhH-HHHH----
Q 007871 173 SEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS-WNSM---- 247 (586)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l---- 247 (586)
....|......+..++++..-+++|-.+|+++..++.. +..+ .+.+-+-+|.++-+-..+..++. -...
T Consensus 643 ~l~~de~il~~ia~alik~elydkagdlfeki~d~dka-----le~f-kkgdaf~kaielarfafp~evv~lee~wg~hl 716 (1636)
T KOG3616|consen 643 ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKA-----LECF-KKGDAFGKAIELARFAFPEEVVKLEEAWGDHL 716 (1636)
T ss_pred HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHH-----HHHH-HcccHHHHHHHHHHhhCcHHHhhHHHHHhHHH
Confidence 22345555666666666666666777777766544321 2223 33333455555543333221111 1111
Q ss_pred ----------------------HHHHHhcCCHHHHHHHHhhCCCCChh--HHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 007871 248 ----------------------IDGYAKIGDLVAAQQLFNEMPERNVF--SWSIMIDGYAQHGNPKEALYLFREMLCQGV 303 (586)
Q Consensus 248 ----------------------~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 303 (586)
+.+......+.+|+.+++.+..+++. -|..+...|...|+++.|.++|.+.-
T Consensus 717 ~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---- 792 (1636)
T KOG3616|consen 717 EQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---- 792 (1636)
T ss_pred HHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----
Confidence 22333444555555555555443322 24445555666666666655554321
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHH
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGL 383 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 383 (586)
.++-.+..|.+.|++..|..+-.+. .|.......|-+-..-+-..|++.+|.+++-.+..|+.. |..|
T Consensus 793 -----~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmy 860 (1636)
T KOG3616|consen 793 -----LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMY 860 (1636)
T ss_pred -----hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHH
Confidence 2334455555666665555544332 222333344444444455556666666666555555532 4555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH
Q 007871 384 GMNGFGEEALKCFAQMETEGIPKDD--LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 461 (586)
-+.|..+..+++..+- .|+. .|...+..-+...|+...|...|-+... |.+-++.|...+.|+
T Consensus 861 dk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~ 925 (1636)
T KOG3616|consen 861 DKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWE 925 (1636)
T ss_pred HhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHH
Confidence 6666666666555442 2222 3555566666667777777766654433 445556666666666
Q ss_pred HHHHHHHhCCCCC----CHHHHH-------------------HHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 462 QALNIVESMPMKP----NLALWG-------------------TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 462 ~A~~~~~~~~~~p----~~~~~~-------------------~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
+|-.+-+.-+-.. -...|. .-+...+..+-++-|..+.+-..+ ...+.....++.
T Consensus 926 dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~ 1003 (1636)
T KOG3616|consen 926 DAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAM 1003 (1636)
T ss_pred HHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhh
Confidence 6666554321100 001110 111112334444555444443332 334567778888
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 519 IYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
.+...|++++|...|-+..+.+.-+
T Consensus 1004 ~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 1004 FLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred hhhhccchhhhhHhhHHHhhccccc
Confidence 8999999999998888877765443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.9e-07 Score=79.79 Aligned_cols=196 Identities=12% Similarity=0.080 Sum_probs=107.2
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCC
Q 007871 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGF 388 (586)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 388 (586)
..+..+...|+...|......+.+.. +.+...+..-..+|...|+...|+.-++... ..+...+.-+-..+...|+
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Confidence 34445566677777777777777664 5567777777778888888877776665544 3556666666677777788
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHH-------------HHhhccCCHHHHHHHHHHhHHhhCCCC---ChHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKDDLIFLGVL-------------IACSHSGLATEGYRIFQSMKRHCGIEP---KLEHYSCLVD 452 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~~~~~l~-------------~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~ 452 (586)
.+.++...++-.+ +.||.......- ......++|.++.+..+...+. .... ....+..+-.
T Consensus 239 ~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 239 AENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCT 315 (504)
T ss_pred HHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeee
Confidence 8888777777766 566653211110 0112334444444444444331 1110 1112223334
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 453 LLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
++...|++.+|++...+. .+.|+ ..++..-..+|.-...|+.|+.-|+++.+.+++|..
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 444555555555554444 23332 444444445555555555555555555555555443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-07 Score=86.46 Aligned_cols=236 Identities=11% Similarity=-0.014 Sum_probs=107.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHH-------
Q 007871 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTAL------- 348 (586)
Q Consensus 276 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------- 348 (586)
..+..+..+..++..|++.+....... -+..-++....++...|....+...-....+.|.. ...-|+.+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 344555555666666666666666543 23333344444556666666555555554444421 11112222
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHH
Q 007871 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEG 427 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A 427 (586)
..+|.+.++++.+...|.+...+... -....+....+++........- +.|.. .-...-...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 22333344444455544443211000 0011112222333333333222 22222 1111123344555666666
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007871 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 505 (586)
+..|.++++ ..|.|...|..-.-+|.+.|.+..|+.-.+.. ...| ....|..-..++....+|++|...|.+.++.
T Consensus 378 v~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666555 23445555666666666666665555544433 1222 2333333344444455566666666666666
Q ss_pred CCCCcchHHHHHHHHHhc
Q 007871 506 KADDCGLYVLLSNIYADA 523 (586)
Q Consensus 506 ~p~~~~~~~~l~~~~~~~ 523 (586)
+|.+..+...+.+++..+
T Consensus 456 dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred CchhHHHHHHHHHHHHHh
Confidence 666555555555554443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.4e-08 Score=95.21 Aligned_cols=235 Identities=18% Similarity=0.134 Sum_probs=148.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC----------CChhH-HHHHHHHHHhCCCchHHHHHHHHHHHC-----C--C
Q 007871 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPE----------RNVFS-WSIMIDGYAQHGNPKEALYLFREMLCQ-----G--V 303 (586)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g--~ 303 (586)
.+...+...|...|+++.|..+++...+ +.+.+ .+.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3455577778888888888887776653 22222 334667888999999999999998752 2 1
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHh-HHHHH
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVI-SYNVM 379 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~-~~~~l 379 (586)
+--..++..|..+|.+.|++++|...++.+.+. ++... .+.+. .++.+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHHH
Confidence 122346677777899999999998887765432 11100 11111 22333
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhHHhh----C-CCC-ChHH
Q 007871 380 IAGLGMNGFGEEALKCFAQMETE---GIPKD----DLIFLGVLIACSHSGLATEGYRIFQSMKRHC----G-IEP-KLEH 446 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~-~~~~ 446 (586)
...+...+++++|..++++..+. -..++ ..+++.|...|...|++++|.+++++++... + ..+ ....
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 44455555555555555543321 01121 2467777777777778777777777766532 1 111 2345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM--------PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
++.+...|.+.+++.+|.++|.+. +..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 667777787778877777777654 23343 46678888888889999999888887774
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-07 Score=93.68 Aligned_cols=148 Identities=14% Similarity=0.135 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhh-------------CCCCChH--HHHHHHHHHh
Q 007871 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC-------------GIEPKLE--HYSCLVDLLS 455 (586)
Q Consensus 391 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~ 455 (586)
.+...+..+...|+++- |..+-..|......+-..+++....... .-+|+.. ++..+...|.
T Consensus 129 ~~~~yl~~~l~KgvPsl---F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPSL---FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCchH---HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 34455566666665443 3333333444444444444444443311 1123332 3455677888
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 456 RAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
..|++++|++++++. ...|+ +..|..-...+...|++.+|...++.+.++++.|..+....+..+.+.|+.++|..++
T Consensus 206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999876 44564 6777777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCC
Q 007871 534 KMMRKRKI 541 (586)
Q Consensus 534 ~~m~~~~~ 541 (586)
....+.+.
T Consensus 286 ~~Ftr~~~ 293 (517)
T PF12569_consen 286 SLFTREDV 293 (517)
T ss_pred HhhcCCCC
Confidence 88877665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.6e-06 Score=83.31 Aligned_cols=461 Identities=13% Similarity=0.129 Sum_probs=240.2
Q ss_pred cCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHH
Q 007871 23 KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVN 102 (586)
Q Consensus 23 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 102 (586)
.++....-.++..++.| ..++.++|++.. +|....++++.-++ +- ..--+....-||..+++.-|.-.|++
T Consensus 852 NRLklLlp~LE~~i~eG-~~d~a~hnAlaK-IyIDSNNnPE~fLk---eN----~yYDs~vVGkYCEKRDP~lA~vaYer 922 (1666)
T KOG0985|consen 852 NRLKLLLPWLESLIQEG-SQDPATHNALAK-IYIDSNNNPERFLK---EN----PYYDSKVVGKYCEKRDPHLACVAYER 922 (1666)
T ss_pred hhHHHHHHHHHHHHhcc-CcchHHHhhhhh-eeecCCCChHHhcc---cC----CcchhhHHhhhhcccCCceEEEeecc
Confidence 34445556677777777 578889999998 88877344443322 21 11112223344444444433332222
Q ss_pred hHhC----CCCCCcccHHHHHHHHhccCCchHH-----------HHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChhH
Q 007871 103 MKRK----GLLVDNYTYPFVLKACGVLMGLVEG-----------TEIHGEVVKMGF--LCDVFVVNGLIGMYSKCGHMGC 165 (586)
Q Consensus 103 m~~~----~~~~~~~~~~~ll~~~~~~~~~~~a-----------~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 165 (586)
-.-. ++--....|....+.+....+.+.- +++.++..+.++ ..|+.-.+.-++++...+-..+
T Consensus 923 GqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~e 1002 (1666)
T KOG0985|consen 923 GQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNE 1002 (1666)
T ss_pred cCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHH
Confidence 1100 0111112333333333333333322 234445555444 2355566666777777777777
Q ss_pred HHHHhccCCC-CC-----hhhHHHHHHH---------------------------HHhCCChhHHHHHHhhCCCCChhHH
Q 007871 166 ARSVFEGSEI-KD-----LVSWNLVLRG---------------------------FVECGEMGKAREVFDEMPQKDAISW 212 (586)
Q Consensus 166 a~~~~~~~~~-~~-----~~~~~~l~~~---------------------------~~~~g~~~~A~~~~~~~~~~~~~~~ 212 (586)
-.++++++.- ++ ...-|.++-. .+..+-+++|+.+|++.. .+....
T Consensus 1003 LIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~-~n~~A~ 1081 (1666)
T KOG0985|consen 1003 LIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD-MNVSAI 1081 (1666)
T ss_pred HHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc-ccHHHH
Confidence 7777776542 21 1222333322 333344444444444431 122222
Q ss_pred HHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHH
Q 007871 213 SIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292 (586)
Q Consensus 213 ~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 292 (586)
..++.. -++++.|.+.-++... +.+|..+..+-.+.|.+.+|++.|-+..+ +..|..++....+.|.|++-.
T Consensus 1082 ~VLie~----i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyikadD--ps~y~eVi~~a~~~~~~edLv 1153 (1666)
T KOG0985|consen 1082 QVLIEN----IGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKADD--PSNYLEVIDVASRTGKYEDLV 1153 (1666)
T ss_pred HHHHHH----hhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhcCC--cHHHHHHHHHHHhcCcHHHHH
Confidence 333322 2445555555444432 33455566666666666666655544433 334555566666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 007871 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372 (586)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (586)
+++...++..-.|... +.++-+|++.+++.+.+.+.. .|+......+.+-+...|.++.|.-+|. +
T Consensus 1154 ~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~ 1219 (1666)
T KOG0985|consen 1154 KYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS-----N 1219 (1666)
T ss_pred HHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH-----H
Confidence 6665555544444333 245555666555554444331 3444444555555555555555555553 3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCC--CChHHHHHH
Q 007871 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE--PKLEHYSCL 450 (586)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~l 450 (586)
+..|..|...+...|++..|...-++. .+..||..+-.+|...+.+.-|. + +|+. ....-...+
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----i---CGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----I---CGLNIIVHADELEEL 1285 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----h---cCceEEEehHhHHHH
Confidence 456777777777888888777665542 34568888888888777665442 2 3433 345556778
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-C-C------CCcchHHHHHHHH
Q 007871 451 VDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL-K-A------DDCGLYVLLSNIY 520 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-p------~~~~~~~~l~~~~ 520 (586)
+..|-..|-+++-+.+++.. +. +.....|..+...|.+- +.++-.+.++-.... + | +....|..+...|
T Consensus 1286 i~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY 1364 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLY 1364 (1666)
T ss_pred HHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 88888889888888888765 22 23344444444444332 334444444433331 1 1 2334566666666
Q ss_pred HhcCCchHHH
Q 007871 521 ADAGMWEHAL 530 (586)
Q Consensus 521 ~~~g~~~~A~ 530 (586)
.+-..|+.|.
T Consensus 1365 ~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1365 DKYEEYDNAA 1374 (1666)
T ss_pred HhhhhhhHHH
Confidence 6666666554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.9e-07 Score=90.43 Aligned_cols=241 Identities=13% Similarity=0.085 Sum_probs=108.4
Q ss_pred hccCCHHHHHHHHHhCCCC--C-hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHH-HHHHHHHHh-----CCCch
Q 007871 221 KKKGDISSARILFEHMPIK--D-LISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSW-SIMIDGYAQ-----HGNPK 289 (586)
Q Consensus 221 ~~~g~~~~a~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~-----~~~~~ 289 (586)
...|++++|.+.++..... | ..........+.+.|+.++|..+|..+.+ |+-..| ..+..+..- ..+.+
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~ 94 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVE 94 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHH
Confidence 4556666666666554321 2 23344555666666666666666666654 332332 233333211 12345
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh-HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALD-LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 290 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
....+++++... -|.......+.-.+.....+. .+..++..+...|+++ +|+.+-..|....+..-..+++...
T Consensus 95 ~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 95 KLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred HHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHH
Confidence 555556655544 233333322222222222222 3344445555555432 3444444444333333333333221
Q ss_pred C------------------CCCHh--HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHH
Q 007871 369 T------------------KKNVI--SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEG 427 (586)
Q Consensus 369 ~------------------~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A 427 (586)
. .|... ++..+...|...|++++|++++++.++ ..|+. ..|..-...+-+.|++.+|
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 1 01111 223334445555555555555555555 33432 3444444455555555555
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
.+.++.... -..-|..+-+..+..+.++|++++|.+++...
T Consensus 248 a~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F 288 (517)
T PF12569_consen 248 AEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLF 288 (517)
T ss_pred HHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhh
Confidence 555555544 22334444444455555555555555554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-07 Score=85.72 Aligned_cols=232 Identities=13% Similarity=0.011 Sum_probs=159.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHH-------H
Q 007871 244 WNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA-------I 314 (586)
Q Consensus 244 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l-------~ 314 (586)
...+.+...+..+++.|.+.+....+ .++.-++....+|...|.+......-.+..+.|- -...-|+.+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhh
Confidence 56677778888888888888887765 4455567777888888888888777777766652 222223333 3
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCHh-HHHHHHHHHHhcCChHH
Q 007871 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT--KKNVI-SYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~ 391 (586)
.++.+.++.+.+...|.........|+.. .+....+++....+... .|... ....-...+.+.|++..
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 34555677888888888765554333321 22334455555544333 23321 12223666889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM- 470 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 470 (586)
|+..|.+++... +-|...|.....+|.+.|.+..|+.-.+..++ -.++....|..-+.++....++++|.+.|++.
T Consensus 377 Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 377 AVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999963 44567899999999999999999998888887 34556677777778888888999999999887
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 007871 471 PMKPNLALWGTLLLACRN 488 (586)
Q Consensus 471 ~~~p~~~~~~~l~~~~~~ 488 (586)
...|+..-+..-+.-|..
T Consensus 454 e~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 454 ELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred hcCchhHHHHHHHHHHHH
Confidence 345655544444444444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-08 Score=92.34 Aligned_cols=250 Identities=13% Similarity=0.075 Sum_probs=147.8
Q ss_pred HHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 007871 251 YAKIGDLVAAQQLFNEMPE----RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326 (586)
Q Consensus 251 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 326 (586)
+.-.|++..++.-.+ ... .+......+.+++...|+++.++. +..... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344556665554333 111 122333445566666666554432 222222 45544444444444333333344
Q ss_pred HHHHHHHHHcCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007871 327 KWIHVFMKRSRIT-MDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405 (586)
Q Consensus 327 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 405 (586)
..-++........ .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ ..
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--ID 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 3333332222222 22233333345566678888888887765 4566677778888899999999999999887 34
Q ss_pred CCHHHHHHHHHHhh----ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 007871 406 KDDLIFLGVLIACS----HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALW 479 (586)
Q Consensus 406 p~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 479 (586)
.| .+...+..++. ..+.+.+|..+|+++.. ..++++.+.+.++.+....|++++|.+++.+. ...| ++.++
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 44 34444555442 23468889999999877 56778888888888899999999999988776 3333 56677
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCcch
Q 007871 480 GTLLLACRNHQNV-TLAEVVVEGLVELKADDCGL 512 (586)
Q Consensus 480 ~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~~ 512 (586)
..++.+....|+. +.+.+++.++....|.++.+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 7777776777776 66778888888888887743
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.8e-07 Score=90.24 Aligned_cols=277 Identities=12% Similarity=-0.011 Sum_probs=165.6
Q ss_pred HHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 007871 258 VAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334 (586)
Q Consensus 258 ~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (586)
..|...+....+ .+..+||.|.-. ...|++.-+.-.|-+-.... +-...+|..+.-.+....+++.|...|...+
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 345555555443 556667666544 44466666666666555442 3455566666667777788888888888777
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-----C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----
Q 007871 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-----K---KNVISYNVMIAGLGMNGFGEEALKCFAQMET----- 401 (586)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----- 401 (586)
... +.+...+-.........|+.-++..+|..-. + ++..-|.+.......+|+.++-+...+++..
T Consensus 878 SLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 665 2344444444444455677777777776521 1 3333444444445566665554443333221
Q ss_pred ----CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHH----HHHHHHhhcCCHHHHHHHHHhCCCC
Q 007871 402 ----EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS----CLVDLLSRAGELEQALNIVESMPMK 473 (586)
Q Consensus 402 ----~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~ 473 (586)
.|.+.....|.......-+.+.+..|.+...+.+.-...+.+...|+ .+.+.+...|.++.|..-+......
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 12333446777777777777777777777666543111223334444 4567778888888887777665444
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD---CGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 474 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
-+......-+.. .-.|+++++...|+++......+ ......++.+...+|.-+.|...+-+...
T Consensus 1037 vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 344433333333 34578999999999998865332 34566677777888888888877666544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-06 Score=76.87 Aligned_cols=420 Identities=12% Similarity=0.058 Sum_probs=242.2
Q ss_pred CCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhhHHH
Q 007871 106 KGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNL 183 (586)
Q Consensus 106 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ 183 (586)
.|+.....-+.+++..+.+..++..+.+++....+.. +.+....+.|..+|-+..++..|-..++++.. |...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 4455555567778887888888888888888776654 22556677888888888889888888887654 22222222
Q ss_pred -HHHHHHhCCChhHHHHHHhhCCC-CChhHHHH-HHHHHhhccCCHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCCHHH
Q 007871 184 -VLRGFVECGEMGKAREVFDEMPQ-KDAISWSI-MIDGYRKKKGDISSARILFEHMP-IKDLISWNSMIDGYAKIGDLVA 259 (586)
Q Consensus 184 -l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~-ll~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 259 (586)
-...+.+.+.+.+|+.+...|.+ ++...-.. +-.+..-+.+++-.+..+++... +.+..+.+...-...+.|+++.
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHH
Confidence 23456678888888888888874 33222111 22223246677777777777776 3566666666666777788888
Q ss_pred HHHHHhhCCC----CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhccCChhHHHHHHHHHH
Q 007871 260 AQQLFNEMPE----RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV-MGAISACAQVGALDLGKWIHVFMK 334 (586)
Q Consensus 260 A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~ 334 (586)
|.+-|+...+ ....+||..+.. .+.++++.|++...+.+++|++..+..- .....+- ..+.+..-..+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt~~lh~--- 237 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI-DVRSVGNTLVLHQ--- 237 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC-chhcccchHHHHH---
Confidence 8877777665 345566655443 3557777888888777777754322110 0000000 0000000000000
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CH
Q 007871 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK-----KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DD 408 (586)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~ 408 (586)
++ -+..+|.-...+.+.|+++.|.+.+.+|+. -|+++...+.-.- ..+++.+..+-+.-+... .| ..
T Consensus 238 -Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ 310 (459)
T KOG4340|consen 238 -SA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPP 310 (459)
T ss_pred -HH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCCh
Confidence 00 012234444456688999999999999984 3666655443221 234555555555555553 33 34
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCC-CChHHHHHHHHHHh-hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE-PKLEHYSCLVDLLS-RAGELEQALNIVESMPMKPNLALWGTLLLAC 486 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 486 (586)
.||..++-.|++..-++.|-.++.+-... .+. .+...|+ |++++. -.-..++|.+-++.....-....-...+..-
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQ 388 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQ 388 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999998888888887654331 111 2334444 344443 3346677776665542111111111111111
Q ss_pred -HhcCCh----HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 487 -RNHQNV----TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 487 -~~~~~~----~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
.++.+- ..+++-+++.+++. -.+...-++.|.+..++..+.+.|..-.+..-..
T Consensus 389 e~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 389 EARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence 122221 22333344444432 1245566778899999999999998877655443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-06 Score=84.02 Aligned_cols=297 Identities=12% Similarity=-0.012 Sum_probs=171.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCh---hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007871 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNV---FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAI 314 (586)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 314 (586)
...+..+...+...|+.+.+.+.+....+ ++. .........+...|++++|.+.+++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34455555555556666665544444331 121 112223345567788888888888887752 333333332 1
Q ss_pred HHHh----ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcC
Q 007871 315 SACA----QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNG 387 (586)
Q Consensus 315 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 387 (586)
..+. ..+..+.+...+.. .....+........+...+...|++++|...+++..+ .+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 1222 23444444444443 1111122233444566778888999999888887763 34567777888888899
Q ss_pred ChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHH-H--HHHHHHhhcCCHH
Q 007871 388 FGEEALKCFAQMETEGI-PKDD--LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHY-S--CLVDLLSRAGELE 461 (586)
Q Consensus 388 ~~~~A~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~ 461 (586)
++++|..++++...... .|+. ..+..+...+...|++++|..+++.........+..... + .+...+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999888776321 1232 235567778888999999999998875421111222111 1 2233333444322
Q ss_pred HHHHH---HHh---C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-C--------CCcchHHHHHHHHHhcCC
Q 007871 462 QALNI---VES---M-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK-A--------DDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 462 ~A~~~---~~~---~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~ 525 (586)
.+... .+. . ..............++...|+.+.|...++.+.... . .........+.++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22222 111 1 111111222245556788899999999998887643 1 123445556777899999
Q ss_pred chHHHHHHHHHHhCC
Q 007871 526 WEHALRIRKMMRKRK 540 (586)
Q Consensus 526 ~~~A~~~~~~m~~~~ 540 (586)
+++|.+.+......+
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-06 Score=82.17 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=28.0
Q ss_pred CChHHHHHHHhcc-CCCCcc-hHHHHHHHHhcCCCchhHHHHHHH
Q 007871 60 LNMDQAERLFNQI-YQPNTY-MHNTMIRGYTQSSNPQKALSFYVN 102 (586)
Q Consensus 60 ~~~~~A~~~~~~~-~~~~~~-~~~~ll~~~~~~~~~~~A~~~~~~ 102 (586)
|+++.|..+++.. ..|+.. .|-.+.......|+.--|.++|..
T Consensus 458 ~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaa 502 (1636)
T KOG3616|consen 458 GDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAA 502 (1636)
T ss_pred CchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 7888888888876 344443 566666666666666666555544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=92.93 Aligned_cols=245 Identities=14% Similarity=0.062 Sum_probs=166.2
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007871 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359 (586)
Q Consensus 280 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 359 (586)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. ..+.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44556788988886665 222221223345556777888888766443 3333333 566666666665554445666
Q ss_pred HHHHHHhccC-CC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007871 360 EARRIFYSMT-KK----NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434 (586)
Q Consensus 360 ~a~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 434 (586)
.+..-+++.. ++ +..........+...|++++|++++.+- .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776665544 22 2222223334567789999999988642 45677778888999999999999999999
Q ss_pred HHhhCCCCChHHHHHHHHHHh----hcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 435 KRHCGIEPKLEHYSCLVDLLS----RAGELEQALNIVESMP--MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
.+ +..| .+...++.++. ....+.+|..+|+++. ..+++.+.+.+..++...|++++|+..++++.+.+|.
T Consensus 158 ~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 76 2333 33334444333 3347999999999994 3468888899999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhcCCc-hHHHHHHHHHHhC
Q 007871 509 DCGLYVLLSNIYADAGMW-EHALRIRKMMRKR 539 (586)
Q Consensus 509 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 539 (586)
++.+...++-+....|+. +.+.+++.++.+.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999999999999999988 5677888887663
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=0.00012 Score=81.19 Aligned_cols=259 Identities=15% Similarity=0.049 Sum_probs=117.2
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChhHHHHHHHHHHHcCC---CC--chhHHHHHHHHH
Q 007871 282 YAQHGNPKEALYLFREMLCQGVRPDV----ISVMGAISACAQVGALDLGKWIHVFMKRSRI---TM--DMIVQTALIDMY 352 (586)
Q Consensus 282 ~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 352 (586)
+...|+++.|...+++....-...+. .....+...+...|+++.|...+.......- .+ .......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 34556666666666555442111111 1223333344555666666655555433211 00 112333444455
Q ss_pred HhcCCHHHHHHHHhccCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHH
Q 007871 353 MKCGSLDEARRIFYSMTK-------K----NVISYNVMIAGLGMNGFGEEALKCFAQMETE--GIPKD--DLIFLGVLIA 417 (586)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~--~~~~~~l~~~ 417 (586)
...|++++|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 556666666655544321 0 0112233344455556666666666654431 11111 1233334444
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHY-----SCLVDLLSRAGELEQALNIVESMPMK--PNL----ALWGTLLLAC 486 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~l~~~~ 486 (586)
+...|+++.|.+.++.+..-.........+ ...+..+...|+.+.|...+...... ... ..+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 555666666666666554310100000000 01113334456666666666554211 011 1122344445
Q ss_pred HhcCChHHHHHHHHHHHhcC------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 487 RNHQNVTLAEVVVEGLVELK------ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
...|++++|...++++.+.. +....++..++.++.+.|+.++|.+.+.+..+..
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56666666666666665532 1112344555666666666666666666665433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.3e-08 Score=94.30 Aligned_cols=116 Identities=17% Similarity=0.168 Sum_probs=100.8
Q ss_pred HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007871 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEG 501 (586)
Q Consensus 424 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 501 (586)
.....++|-.+....+..+|+.++..|+-.|--.|++++|+..|+.+ ..+| |..+|+.|...+....+.++|+..|.+
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHH
Confidence 34455566666554565688999999999999999999999999987 5666 788999999999999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 502 LVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 502 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
++++.|.-..+++.|+-.|...|.|++|...|-..+..
T Consensus 490 ALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 490 ALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988776543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-05 Score=80.46 Aligned_cols=257 Identities=13% Similarity=0.088 Sum_probs=128.1
Q ss_pred CcchHHHHHH--HHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHh-C--------CC
Q 007871 76 NTYMHNTMIR--GYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM-G--------FL 144 (586)
Q Consensus 76 ~~~~~~~ll~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~--------~~ 144 (586)
|..+-..+++ .|..-|+.+.|.+-.+.++. ...|..+.+.|.+.++++-|.-.+..|... | ..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 4445555553 34556777777766665543 245777777777777777666655555432 1 01
Q ss_pred CchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC-CCChhHHHHHHHHHhhcc
Q 007871 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDGYRKKK 223 (586)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~~ 223 (586)
|+ .+-..........|.+++|..+|.+.+. |..|=..|-..|.+++|+++-+.=. -.=..||..-...+ ..+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~L-ear 871 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYL-EAR 871 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHH-Hhh
Confidence 11 1222222233455566666666655443 2233334445566666665554322 01112333333333 445
Q ss_pred CCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC
Q 007871 224 GDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGV 303 (586)
Q Consensus 224 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 303 (586)
++.+.|++.|++...+--.++..|.. +........+++.++.. |.-...-+-..|+.+.|+.+|.....
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e------~p~~~e~Yv~~~~d~~L--~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKE------YPKQIEQYVRRKRDESL--YSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHh------ChHHHHHHHHhccchHH--HHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 55666666665544332222222211 22222333333333332 22223334456666777766665542
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
|-+++...|-.|+.++|.++-++- -|......+...|-..|++.+|..+|.+.
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445556666666766666665431 24444555666677777777777666544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-07 Score=85.15 Aligned_cols=180 Identities=13% Similarity=-0.001 Sum_probs=116.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HH
Q 007871 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTK--KN-V---ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD----LI 410 (586)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~ 410 (586)
....+..+...+...|++++|...|+++.+ |+ . ..+..+..++...|++++|...++++.+. .|+. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 444566666777777888888777776653 22 1 35566677777778888888888877763 3322 13
Q ss_pred HHHHHHHhhcc--------CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 007871 411 FLGVLIACSHS--------GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTL 482 (586)
Q Consensus 411 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 482 (586)
+..+..++... |+++.|.+.++.+... .+.+...+..+..... ..... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 44455555443 6677777777777662 2223333222211111 00000 0011245
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 483 LLACRNHQNVTLAEVVVEGLVELKADD---CGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 483 ~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
...+...|++.+|+..++++.+..|++ +..+..++.++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556889999999999999999987765 478999999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-06 Score=85.17 Aligned_cols=441 Identities=14% Similarity=0.042 Sum_probs=249.4
Q ss_pred chHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhC-CCCchhHHHHHHHH
Q 007871 78 YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG-FLCDVFVVNGLIGM 156 (586)
Q Consensus 78 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~ 156 (586)
..|..|...|....+..+|.+.|+...+.+ .-+..........++...+++.|..+.-..-+.. ...-...|....-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 367777777776667777888888776653 2245566677777888888888877732222211 01111223334445
Q ss_pred HHhcCChhHHHHHhccCC---CCChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHHHH
Q 007871 157 YSKCGHMGCARSVFEGSE---IKDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARI 231 (586)
Q Consensus 157 ~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~ 231 (586)
|.+.++...|..-|+... ++|...|..++.+|...|.+..|+++|.+.. .|+...-.-......+..|.+.++..
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 667777777777777544 3466778888888888888888888887766 55543322233333356777777777
Q ss_pred HHHhCCCC----------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHhCCCchH
Q 007871 232 LFEHMPIK----------DLISWNSMIDGYAKIGDLVAAQQLFNEMPE-----------RNVFSWSIMIDGYAQHGNPKE 290 (586)
Q Consensus 232 ~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~ 290 (586)
.+..+... -..++-.+...+.-.|-...|.+.++...+ .+...|..+. .
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as----------d 721 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS----------D 721 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh----------H
Confidence 76655411 122222223333333333334443333221 1222222222 2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh---h---HHHHHHHHHHHcCCCCchhHHHHHHHHHHh----c----C
Q 007871 291 ALYLFREMLCQGVRPDVISVMGAISACAQVGAL---D---LGKWIHVFMKRSRITMDMIVQTALIDMYMK----C----G 356 (586)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----g 356 (586)
|..+|-... .. .|+.+....+..-....+.. + -+...+-. ......++..|..++.-|.+ . .
T Consensus 722 ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f~~l~et~~ 797 (1238)
T KOG1127|consen 722 ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYFLLLGETMK 797 (1238)
T ss_pred HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHHHHcCCcch
Confidence 222222222 11 23333222222212222222 1 00000000 00011122233333332222 1 1
Q ss_pred CHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007871 357 SLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433 (586)
Q Consensus 357 ~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (586)
+...|...+.... ..+...|+.|.-. ...|++.-|...|-+-... .+.+..+|..+...+....+++.|...|..
T Consensus 798 ~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 798 DACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHh
Confidence 2345677776655 3566778777655 5567888887777665553 233456788888888899999999999998
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHH---------
Q 007871 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-------PMKPNLALWGTLLLACRNHQNVTLAEV--------- 497 (586)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~--------- 497 (586)
.+. -.|.+...|.....+....|+.-++..+|..- +..|+...|.....-....|++++-+.
T Consensus 876 ~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 876 VQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred hhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 877 44556677766666667788888888887642 223555555544444555665555444
Q ss_pred -HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 498 -VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 498 -~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
.+++.....|+...+|...+..+-+.+.+.+|.++..+..
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4445555679999999999999999999999988877753
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-07 Score=79.78 Aligned_cols=149 Identities=9% Similarity=0.097 Sum_probs=114.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (586)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ ..+.+...|..++..|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 4457788888776554433221 11 012235667778878887777 457788999999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 007871 460 LEQALNIVESM-PMKP-NLALWGTLLLA-CRNHQN--VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRK 534 (586)
Q Consensus 460 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 534 (586)
+++|...+++. ...| +...+..+..+ +...|+ .++|..+++++.+.+|+++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887 3445 67777777776 466677 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCCc
Q 007871 535 MMRKRKIK 542 (586)
Q Consensus 535 ~m~~~~~~ 542 (586)
++.+....
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 99875443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.83 E-value=9.8e-06 Score=72.65 Aligned_cols=301 Identities=9% Similarity=0.005 Sum_probs=166.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHH---HHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhh
Q 007871 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVL---RGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRK 221 (586)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~ 221 (586)
+.-.-.|...+...|.+..|+.-|....+.|+..|.++. ..|...|+...|+.-+++.. +||-.....--.....
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 334445666677778888888888877777777666654 35777777777777777766 5664433332222225
Q ss_pred ccCCHHHHHHHHHhCCCCCh------hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHH
Q 007871 222 KKGDISSARILFEHMPIKDL------ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295 (586)
Q Consensus 222 ~~g~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 295 (586)
+.|.++.|..-|+.....++ .++..++- .++- ......+..+...|+...|+...
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~-------~~e~------------~~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL-------IQEH------------WVLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh-------HHHH------------HHHHHHHHHHhcCCchhhHHHHH
Confidence 66777777777666553211 01110000 0000 00011122333445555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCH
Q 007871 296 REMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--KNV 373 (586)
Q Consensus 296 ~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~ 373 (586)
..+++. .+.|...+..-..+|...|.+..|..-++...+.. ..++..+-.+-..+...|+.+.++...++..+ ||-
T Consensus 179 ~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH 256 (504)
T KOG0624|consen 179 THLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH 256 (504)
T ss_pred HHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence 554443 13444444444445555555555544444443332 12223333334444444555554444444332 211
Q ss_pred h----HHHHH---------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007871 374 I----SYNVM---------IAGLGMNGFGEEALKCFAQMETEGIPKDDL---IFLGVLIACSHSGLATEGYRIFQSMKRH 437 (586)
Q Consensus 374 ~----~~~~l---------~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 437 (586)
. .|-.+ +......+++.++++-.+...+........ .+..+-.++...|++.+|++.-.++..
T Consensus 257 K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~- 335 (504)
T KOG0624|consen 257 KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD- 335 (504)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-
Confidence 1 11110 122345678888888888777743221222 344455567788999999999888877
Q ss_pred hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
-.+.|+.++---..+|.-..++++|+.-|+..
T Consensus 336 -~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 336 -IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKA 367 (504)
T ss_pred -cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34456888888899999999999999999887
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-05 Score=77.66 Aligned_cols=20 Identities=10% Similarity=-0.067 Sum_probs=13.7
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 007871 486 CRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~ 505 (586)
+...|++++|.+.+..+...
T Consensus 317 ~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 317 AFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55677777777777776653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-06 Score=73.60 Aligned_cols=282 Identities=12% Similarity=0.001 Sum_probs=190.7
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHH-HHHHHH
Q 007871 80 HNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG-LIGMYS 158 (586)
Q Consensus 80 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~ 158 (586)
+.+.+.-+.+..++..|++++..-.++.. -+....+.+..+|....++..|-..++++-... |...-|.. -...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHH
Confidence 56677777888999999999998887742 266677888888899999999999999988743 55554442 245566
Q ss_pred hcCChhHHHHHhccCCCCChhhHHHH--H--HHHHhCCChhHHHHHHhhCC-CCChhHHHHHHHHHhhccCCHHHHHHHH
Q 007871 159 KCGHMGCARSVFEGSEIKDLVSWNLV--L--RGFVECGEMGKAREVFDEMP-QKDAISWSIMIDGYRKKKGDISSARILF 233 (586)
Q Consensus 159 ~~g~~~~a~~~~~~~~~~~~~~~~~l--~--~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~~g~~~~a~~~~ 233 (586)
+.+.+..|+.+...|...+ ...+.. + ......+++..+..++++.. ..+..+.+...-.. .+.|+++.|.+-|
T Consensus 90 ~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCll-ykegqyEaAvqkF 167 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLL-YKEGQYEAAVQKF 167 (459)
T ss_pred HhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhee-eccccHHHHHHHH
Confidence 7888999999988887642 122221 2 23346788999999999887 34444444333333 7899999999999
Q ss_pred HhCCCC----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------------CCh---------------hHHHH
Q 007871 234 EHMPIK----DLISWNSMIDGYAKIGDLVAAQQLFNEMPE-----------------RNV---------------FSWSI 277 (586)
Q Consensus 234 ~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------~~~---------------~~~~~ 277 (586)
.....- ....|+.- -+..+.|+++.|++...++.+ +|+ .++|.
T Consensus 168 qaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 887643 33455544 455678899999999888753 121 12333
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 007871 278 MIDGYAQHGNPKEALYLFREMLCQ-GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356 (586)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (586)
-...+.+.++++.|.+.+-+|-.+ ....|++|...+.-. ...+++.....-+..+...+ +....+|..++-.||+..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhH
Confidence 333456778888888887777422 224466676554432 23344555555555555554 355678888888888888
Q ss_pred CHHHHHHHHhccC
Q 007871 357 SLDEARRIFYSMT 369 (586)
Q Consensus 357 ~~~~a~~~~~~~~ 369 (586)
-++-|-.++.+-.
T Consensus 325 yf~lAADvLAEn~ 337 (459)
T KOG4340|consen 325 YFDLAADVLAENA 337 (459)
T ss_pred HHhHHHHHHhhCc
Confidence 8888888876544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-07 Score=87.06 Aligned_cols=249 Identities=11% Similarity=0.022 Sum_probs=185.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007871 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359 (586)
Q Consensus 280 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 359 (586)
.-+.+.|+..+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.. +.+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 44678888999999999988874 5567788888888888888889999999988886 446677888888899999988
Q ss_pred HHHHHHhccCCCCH-hHHHHHH---------HHHHhcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007871 360 EARRIFYSMTKKNV-ISYNVMI---------AGLGMNGFGEEALKCFAQM-ETEGIPKDDLIFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 360 ~a~~~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~A~~~~~~m-~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 428 (586)
+|.+.++.-..... ..|.... ..+..........++|-++ ...+..+|+.....|.-.|.-.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 99988876531100 0000000 1111112233444454444 45555688888888888899999999999
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
..|+.+.. --|-|..+||.|+-.++...+.++|+..|.++ ..+|. +.....|..+|...|.|++|...|-.++.+.
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999988 34557899999999999999999999999988 56775 5677888999999999999999999998865
Q ss_pred CC-----C-----cchHHHHHHHHHhcCCchHHHHH
Q 007871 507 AD-----D-----CGLYVLLSNIYADAGMWEHALRI 532 (586)
Q Consensus 507 p~-----~-----~~~~~~l~~~~~~~g~~~~A~~~ 532 (586)
+. . ..+|..|=.++.-.++.+-+.+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 43 1 24677777777777777755443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.2e-07 Score=75.49 Aligned_cols=121 Identities=10% Similarity=-0.012 Sum_probs=77.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007871 394 KCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM 472 (586)
Q Consensus 394 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 472 (586)
.++++..+ ..|+. +..+..++...|++++|...|+.+.. --+.+...+..++.++...|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 33432 44455566667777777777777666 34446666777777777777777777777666 22
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 473 KP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 473 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
.| +...+..+..++...|++++|+..|+++++..|+++..+...+.+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 33 5666666666777777777777777777777777777776665544
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.6e-06 Score=91.03 Aligned_cols=203 Identities=14% Similarity=0.148 Sum_probs=157.9
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007871 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK--------NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410 (586)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 410 (586)
+.+...|-..|......++.++|+++.++..+. -...|.++++.-...|.-+...++|+++.+ +--....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 344556777777788888888888888877631 234677777777777877888888888887 3333456
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM----PMKPNLALWGTLLLAC 486 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~ 486 (586)
|..|...|.+.+.+++|.++++.|.++++ -....|..++..+.+..+-+.|.+++.++ +.+.......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 78888888888999999999999988554 66678888888888888888888888776 2223455555556666
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCC
Q 007871 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKET 545 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 545 (586)
.+.||.+++..+|+..+...|.....|+.+++.-.+.|+.+.++.+|++....++.+..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence 78899999999999999988998999999999999999999999999999888877654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.1e-07 Score=73.15 Aligned_cols=107 Identities=12% Similarity=-0.046 Sum_probs=91.6
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
.++++..+ ..|+ .+..++..+...|++++|...|+.. ...| +...+..+..++...|++++|+..|+++.+.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34555544 2343 4566788999999999999999987 3444 78888999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 507 ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 507 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
|.++..+..++.++...|++++|...+++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999997743
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.00032 Score=67.22 Aligned_cols=130 Identities=11% Similarity=0.118 Sum_probs=82.1
Q ss_pred CCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHH
Q 007871 41 ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPF 117 (586)
Q Consensus 41 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ 117 (586)
+-|...|..+++ .... ...+++++.++++ .+-....|..-|..-.+..+++....+|.+.+.. ..+...|..
T Consensus 17 P~di~sw~~lir--e~qt-~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIR--EAQT-QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHH--HHcc-CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHH
Confidence 678888999998 5555 5899999999988 3345667888899889999999999999988776 345666666
Q ss_pred HHHHHhc-cCCchHHH----HHHHH-HHHhCCCCc-hhHHHHHHHHH---------HhcCChhHHHHHhccCCC
Q 007871 118 VLKACGV-LMGLVEGT----EIHGE-VVKMGFLCD-VFVVNGLIGMY---------SKCGHMGCARSVFEGSEI 175 (586)
Q Consensus 118 ll~~~~~-~~~~~~a~----~~~~~-~~~~~~~~~-~~~~~~li~~~---------~~~g~~~~a~~~~~~~~~ 175 (586)
-|..-.+ .+.....+ +-|+. +.+.|+.+- -..|+..+..+ ....+++..+++++++..
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6654332 23333322 22332 234454432 23455444332 333455666777776653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.7e-06 Score=72.28 Aligned_cols=154 Identities=16% Similarity=0.144 Sum_probs=111.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (586)
..+-..+...|+.+....+....... .+.+.......+....+.|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 45556666677777777766664441 233444555577777778888888888888777 667778888888888888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 457 AGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 457 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
.|++++|..-|.+. ...| ++...+.+...+.-.||.+.|+.++..+....+.+..+-..++.+....|++++|..+.
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 88888887777665 3333 56667777777777888888888888887777778888888888888888888777654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.6e-06 Score=87.03 Aligned_cols=171 Identities=11% Similarity=0.007 Sum_probs=128.0
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHH
Q 007871 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449 (586)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 449 (586)
.++..+..|.....+.|++++|..+|+...+ +.|+. .....+..++.+.+++++|+...++... .-+.+......
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 3577888888888889999999999998888 67766 4677777888888999999998888887 55667778888
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 007871 450 LVDLLSRAGELEQALNIVESMP-MKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 527 (586)
+..++...|++++|..+|++.- ..| +...+..+..++...|+.++|...|+++.+...+-...|..++ ++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 8888889999999999998873 334 4677888888888889999999999998887655444444433 2334
Q ss_pred HHHHHHHHHHhCCCccCCCeeEEE
Q 007871 528 HALRIRKMMRKRKIKKETGRSVIE 551 (586)
Q Consensus 528 ~A~~~~~~m~~~~~~~~~~~~~~~ 551 (586)
.-...++++.-.++..+..+..+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~ 257 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILV 257 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeee
Confidence 455677777666655554444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.4e-05 Score=74.96 Aligned_cols=155 Identities=9% Similarity=0.006 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc---CCH----HH
Q 007871 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA---GEL----EQ 462 (586)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~ 462 (586)
++++.+++++.+.. +-|..+|....-++...|+++++++.++++++ ..+.+...|+....++.+. |.. ++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccHHH
Confidence 45566666666531 22445666666666666777777777777776 2344555666555554443 222 35
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC------------
Q 007871 463 ALNIVESM-PMKP-NLALWGTLLLACRNH----QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG------------ 524 (586)
Q Consensus 463 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------ 524 (586)
++++..++ ...| +...|+.+...+... +...+|...+.++.+.+|.++.+...|+++|+...
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 55555333 4444 567777777777663 34566888888888888999999999999988643
Q ss_pred ------CchHHHHHHHHHHhCCCccCCCeeE
Q 007871 525 ------MWEHALRIRKMMRKRKIKKETGRSV 549 (586)
Q Consensus 525 ------~~~~A~~~~~~m~~~~~~~~~~~~~ 549 (586)
..++|..+++.+. ...|-...||
T Consensus 282 ~~~~~~~~~~a~~~~~~l~--~~d~ir~~yw 310 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELE--VADPMRRNYW 310 (320)
T ss_pred cccccccHHHHHHHHHHHH--hhCcHHHHHH
Confidence 2366888888873 3333333343
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.5e-06 Score=84.04 Aligned_cols=216 Identities=12% Similarity=0.041 Sum_probs=165.9
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHHHHHhc
Q 007871 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT--KKNVISYNVMIAGLGMN 386 (586)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~ 386 (586)
.=..+...+...|-...|..+++++. .+..++.+|+..|+..+|..+..... +|++..|..+.......
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccCh
Confidence 33445566677777778888877543 45567888888888888888776554 46777788777777666
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007871 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 466 (586)
.-+++|.++.+..-.. .-..+.......++++++.+.|+.-.+ -.+.-..+|-.++-+..+.++++.|.+.
T Consensus 471 s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHH
Confidence 6677777777653321 111122223346889999999888777 3445678888899999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 467 VESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 467 ~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
|... ...| +...|+.+..+|.+.++-.+|...+.++.+.+-.+..+|.+..-+..+-|.+++|.+.+.++.+....
T Consensus 542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 9876 4455 67899999999999999999999999999999999999999999999999999999999998766543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4e-06 Score=72.69 Aligned_cols=136 Identities=15% Similarity=0.062 Sum_probs=116.8
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 007871 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGT 481 (586)
Q Consensus 404 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 481 (586)
..|+......+-..+...|+-+....+...... ..+.+......+++...+.|++.+|+..+.+. ..++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355443336667778888888888888887655 45667777888999999999999999999998 45578999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
+..+|-+.|+++.|...|.++.++.|+++.+.+.++..|.-.|+++.|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999876554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.7e-06 Score=71.57 Aligned_cols=82 Identities=18% Similarity=0.264 Sum_probs=37.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 007871 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALN 465 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 465 (586)
.|++++|+++|+.+.+.. +.|..++..=+...-..|+.-+|++-+....+ .+..|.+.|..+...|...|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 444455555555544432 22223333333333344444444444444444 344445555555555555555555555
Q ss_pred HHHhC
Q 007871 466 IVESM 470 (586)
Q Consensus 466 ~~~~~ 470 (586)
.++++
T Consensus 176 ClEE~ 180 (289)
T KOG3060|consen 176 CLEEL 180 (289)
T ss_pred HHHHH
Confidence 55444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.4e-05 Score=64.63 Aligned_cols=173 Identities=14% Similarity=0.087 Sum_probs=98.3
Q ss_pred HHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007871 331 VFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410 (586)
Q Consensus 331 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 410 (586)
+.+.......+......-...|+..|++++|++...... +....-.=+..+.+..+.+-|.+.+++|.+ --+..|
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~t 171 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDAT 171 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHH
Confidence 333333333333333334455666777777777766532 222222223445566667777777777765 224456
Q ss_pred HHHHHHHhhc----cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 007871 411 FLGVLIACSH----SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTLLL 484 (586)
Q Consensus 411 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~ 484 (586)
.+.|..++.+ .+.+.+|.-+|+++.. ..+|+..+.+..+.+....|++++|..+++.. +...++.+...++.
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 6656555532 3456677777777766 46677777777777777777777777777666 22335555555555
Q ss_pred HHHhcCC-hHHHHHHHHHHHhcCCCCc
Q 007871 485 ACRNHQN-VTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 485 ~~~~~~~-~~~a~~~~~~~~~~~p~~~ 510 (586)
.-...|. .+-..+.+.++....|.++
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 4444443 3444556666666666655
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.6e-05 Score=83.11 Aligned_cols=254 Identities=9% Similarity=0.052 Sum_probs=159.8
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007871 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315 (586)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 315 (586)
.+...+..|+..+...+++++|.++.+...+ |+ ...|..+...+.+.++.+.+..+ .++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 3566777788888888888888888776554 33 33444444455666664444433 2233
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHH
Q 007871 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEA 392 (586)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 392 (586)
......++..+..++..+.+.+ .+...+..++.+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 3333334444444444444432 2334666778888888888888888887764 4667777788788777 88888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 007871 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472 (586)
Q Consensus 393 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 472 (586)
.+++.+.... +...+++..+.++|.++.. ..+.+...+..+.+.....- ..
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~------------~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHR------------EF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhh------------cc
Confidence 8887776652 4555677788888888877 34444444444443332221 11
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH-HHhCCCccC
Q 007871 473 KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM-MRKRKIKKE 544 (586)
Q Consensus 473 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-m~~~~~~~~ 544 (586)
.--..++..+-..|...++|+++..+++.+++.+|.|..+...++.+|. +.|.. ...+++ ++..|++..
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~ 289 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNN 289 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhccccC
Confidence 2234455566677888889999999999999999999999999998887 44444 333333 233344444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00021 Score=79.32 Aligned_cols=397 Identities=12% Similarity=-0.014 Sum_probs=209.0
Q ss_pred chHHHHHHHHHHHcCCC--C-C----hhhHhHHHHHhccCCC---CChHHHHHHHhccCCCCcchHHHHHHHHhcCCCch
Q 007871 25 TTHILQILAQLTTNDLI--T-E----PFTLSQLLMSLTSPNT---LNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQ 94 (586)
Q Consensus 25 ~~~a~~~~~~~~~~~~~--~-~----~~~~~~ll~~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 94 (586)
.+++.++++.+...|+. | + .+.|..+++ -+.+.. .+.+....+ +......+...|++.
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r-~~l~~~l~~~~~~~~~~l-----------h~raa~~~~~~g~~~ 358 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFA-SFLRHRCQWELAQELPEL-----------HRAAAEAWLAQGFPS 358 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHH-HHHHHHHHhcCchHHHHH-----------HHHHHHHHHHCCCHH
Confidence 44567788888877752 1 1 244566665 232210 122222222 223334455556655
Q ss_pred hHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC
Q 007871 95 KALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174 (586)
Q Consensus 95 ~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 174 (586)
+|...+....... .-..............|+++.+...+..+.......+..........+...|+++++...+....
T Consensus 359 ~Al~~a~~a~d~~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~ 436 (903)
T PRK04841 359 EAIHHALAAGDAQ--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAE 436 (903)
T ss_pred HHHHHHHHCCCHH--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5554443331110 00011111122233455666655555544221111222233334444556677777666664321
Q ss_pred ----CC----C----hhhHHHHHHHHHhCCChhHHHHHHhhCC--CC--Ch----hHHHHHHHHHhhccCCHHHHHHHHH
Q 007871 175 ----IK----D----LVSWNLVLRGFVECGEMGKAREVFDEMP--QK--DA----ISWSIMIDGYRKKKGDISSARILFE 234 (586)
Q Consensus 175 ----~~----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~--~~----~~~~~ll~~~~~~~g~~~~a~~~~~ 234 (586)
.. + ......+...+...|++++|...++... .+ +. ...+.+...+ ...|+++.|...++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~-~~~G~~~~A~~~~~ 515 (903)
T PRK04841 437 QELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH-HCKGELARALAMMQ 515 (903)
T ss_pred HhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 10 0 0111222344556777777777776654 11 11 1122223333 56788888877766
Q ss_pred hCCC-------C--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CC----hhHHHHHHHHHHhCCCchHHHHH
Q 007871 235 HMPI-------K--DLISWNSMIDGYAKIGDLVAAQQLFNEMPE-------RN----VFSWSIMIDGYAQHGNPKEALYL 294 (586)
Q Consensus 235 ~~~~-------~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~ 294 (586)
+... + ...+...+...+...|+++.|...+++... ++ ...+..+...+...|++++|...
T Consensus 516 ~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 595 (903)
T PRK04841 516 QTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQC 595 (903)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5541 1 123445566677888888888887776542 11 12344455566777999999888
Q ss_pred HHHHHHCC--CCC--CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc--hh--H--HHHHHHHHHhcCCHHHHHHH
Q 007871 295 FREMLCQG--VRP--DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD--MI--V--QTALIDMYMKCGSLDEARRI 364 (586)
Q Consensus 295 ~~~m~~~g--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~--~--~~~l~~~~~~~g~~~~a~~~ 364 (586)
+.+..... ..+ ....+..+.......|+.+.|...+........... .. . ....+..+...|+.+.|...
T Consensus 596 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 675 (903)
T PRK04841 596 ARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANW 675 (903)
T ss_pred HHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 88876431 112 123344455566788888888888877654311111 10 0 01122444557888888888
Q ss_pred HhccCCCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCCHHHHHHHHH
Q 007871 365 FYSMTKKNV-------ISYNVMIAGLGMNGFGEEALKCFAQMETE----GIPKDD-LIFLGVLIACSHSGLATEGYRIFQ 432 (586)
Q Consensus 365 ~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 432 (586)
+.....+.. ..+..+..++...|++++|...+++.... |..++. .+...+..++...|+.++|...+.
T Consensus 676 l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 676 LRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred HHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 766553211 11344566677788888888888876542 222222 355566667778888888888888
Q ss_pred HhHH
Q 007871 433 SMKR 436 (586)
Q Consensus 433 ~~~~ 436 (586)
+...
T Consensus 756 ~Al~ 759 (903)
T PRK04841 756 EALK 759 (903)
T ss_pred HHHH
Confidence 8776
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1e-05 Score=70.50 Aligned_cols=154 Identities=10% Similarity=0.087 Sum_probs=115.8
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007871 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 428 (586)
+..|...|+++.+....+.+..+. ..+...++.++++..+++.... -+.+...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777788777655543332221 0122356677888888877774 3556678999999999999999999
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 429 RIFQSMKRHCGIEPKLEHYSCLVDLL-SRAGE--LEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLV 503 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 503 (586)
..+++..+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++.
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999988 4456788888888874 67777 59999999988 3445 67788888888999999999999999999
Q ss_pred hcCCCCcchH
Q 007871 504 ELKADDCGLY 513 (586)
Q Consensus 504 ~~~p~~~~~~ 513 (586)
+..|++..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9997766444
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.1e-06 Score=66.26 Aligned_cols=120 Identities=12% Similarity=0.044 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+....-.+...+...|++++|.++|+-. ...| +..-|..|..+|...|++.+|+..|.++..++|++|..+..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4455556777788999999999999877 3445 6777888888899999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHHHhh
Q 007871 521 ADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585 (586)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 585 (586)
...|+.+.|++.|+..+...- .+|+-.+|.+.-+...+.+.+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhhc
Confidence 999999999999998877431 257777777666666555443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-06 Score=69.05 Aligned_cols=97 Identities=22% Similarity=0.244 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+......++..+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++.+.+|.++..+..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3344555666666777777777777665 2223 5566666666677777777777777777777777777777777777
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007871 521 ADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~ 539 (586)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777766653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.7e-06 Score=74.82 Aligned_cols=183 Identities=13% Similarity=0.002 Sum_probs=126.2
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC-Hh---H
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM--DMIVQTALIDMYMKCGSLDEARRIFYSMTK--KN-VI---S 375 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~---~ 375 (586)
......+......+...|+++.|...++.+....... ....+..+..++...|++++|...++.+.+ |+ .. .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 3455677788888999999999999999998765321 124667788999999999999999998863 32 22 4
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHH
Q 007871 376 YNVMIAGLGMN--------GFGEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446 (586)
Q Consensus 376 ~~~l~~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 446 (586)
+..+..++... |++++|.+.++++... .|+.. ....+..... ..... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----------~~~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----------LRNRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----------HHHHH-H--------HH
Confidence 55556666554 7889999999999873 55432 2222211100 00000 0 11
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM----PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
...+...|.+.|++++|...+++. +..| ....+..+..++...|++++|..+++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235667788899999999888876 2223 356778888889999999999998888776655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.9e-06 Score=81.03 Aligned_cols=213 Identities=14% Similarity=0.066 Sum_probs=153.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 007871 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356 (586)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (586)
.+...+.+.|-...|+.++++.. .+..++.+|...|+.++|..+.....+. +|++..|..+.+......
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 45566777788888888887654 4566777888888888888887777663 677888888887777666
Q ss_pred CHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 357 SLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 357 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
-+++|.++.+..... +...+.....+.++++++.+.|+.-.+. .+-...+|..+..+..+.+++..|.+.|.....
T Consensus 472 ~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt 547 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT 547 (777)
T ss_pred HHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhhhHHHHHHHHHHhh
Confidence 678888887755432 2222233334478888888888876662 122346777777777888888888888888877
Q ss_pred hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
+-+.+...||.+..+|.+.|+..+|...+++. + ...+...|...+....+.|.+++|++.+.++..+.
T Consensus 548 --L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 548 --LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred --cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 55667788888888888888888888888877 2 12345566667777778888888888888887753
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0014 Score=63.10 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=60.7
Q ss_pred CCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC--ChhhHHHHHH
Q 007871 109 LVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK--DLVSWNLVLR 186 (586)
Q Consensus 109 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~ 186 (586)
+-|..+|..||+-+... -++++++.++++.. -++.....|..-|+.-.+..+++...++|.+...+ +...|...+.
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~-~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~ 94 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN-VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS 94 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 44778999999977555 89999999999887 34556778889999999999999999999887654 5666766665
Q ss_pred H
Q 007871 187 G 187 (586)
Q Consensus 187 ~ 187 (586)
-
T Consensus 95 Y 95 (656)
T KOG1914|consen 95 Y 95 (656)
T ss_pred H
Confidence 3
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.9e-07 Score=54.45 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=21.7
Q ss_pred CCCCchhHHHHHHHHHHhcCChhHHHHHhccC
Q 007871 142 GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGS 173 (586)
Q Consensus 142 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 173 (586)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-05 Score=81.09 Aligned_cols=230 Identities=13% Similarity=0.080 Sum_probs=139.8
Q ss_pred HHHHHHhhCC-CCCh-hHHHHHHHHHhhccCCHHHHHHHHHhCCCC--------ChhHHHHHHHHHHhcCCHHHHHHHHh
Q 007871 196 KAREVFDEMP-QKDA-ISWSIMIDGYRKKKGDISSARILFEHMPIK--------DLISWNSMIDGYAKIGDLVAAQQLFN 265 (586)
Q Consensus 196 ~A~~~~~~~~-~~~~-~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~ 265 (586)
.|.++-+.+. .||. ..|...|... .+.+++++|.++.++..+. -...|.++++.-..-|.-+...++|+
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~-LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFH-LELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHH-hhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 3333333333 4443 4455555555 6677777777777666532 22456677776666677777777777
Q ss_pred hCCC-CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCC-Cch
Q 007871 266 EMPE-RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT-MDM 342 (586)
Q Consensus 266 ~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 342 (586)
+..+ -| ...|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|..++.++.+.-.+ -..
T Consensus 1522 RAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1522 RACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred HHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence 7765 22 345667777777777777777777777764 2345556666777777777777777777766655222 123
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHH
Q 007871 343 IVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD--LIFLGVLIA 417 (586)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~ 417 (586)
......+..-.+.|+.+.+..+|+.... .....|+..+..-.++|+.+.+..+|++....++.|-. ..|...+..
T Consensus 1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 3444455555667777777777776653 24556777777777777777777777777776665543 234444433
Q ss_pred hhccCCHHHH
Q 007871 418 CSHSGLATEG 427 (586)
Q Consensus 418 ~~~~g~~~~A 427 (586)
=-..|+-+.+
T Consensus 1681 Ek~~Gde~~v 1690 (1710)
T KOG1070|consen 1681 EKSHGDEKNV 1690 (1710)
T ss_pred HHhcCchhhH
Confidence 3334444333
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.3e-05 Score=63.85 Aligned_cols=171 Identities=14% Similarity=0.103 Sum_probs=110.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 376 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
|..++-+....|+.+.|..+++++... + |.. .....-..-+-..|++++|.++++.+.. ..|.|..++..-+-+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHHH
Confidence 344444555667777777777777664 3 333 2222222234456777777777777777 3455666666666666
Q ss_pred hhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---CchHH
Q 007871 455 SRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG---MWEHA 529 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A 529 (586)
...|+.-+|++-+... .+..|...|..+...|...|++++|.-.+++++=..|-++..+..+++++.-.| ++.-|
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6777777777666555 344577777777777777778888877777777777777777777777765554 44567
Q ss_pred HHHHHHHHhCCCccCCCeeEE
Q 007871 530 LRIRKMMRKRKIKKETGRSVI 550 (586)
Q Consensus 530 ~~~~~~m~~~~~~~~~~~~~~ 550 (586)
+.+|++..+...+...+.+.+
T Consensus 211 rkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHhChHhHHHHHHH
Confidence 777777777665444444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.7e-05 Score=78.31 Aligned_cols=141 Identities=11% Similarity=0.057 Sum_probs=111.9
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH
Q 007871 338 ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLG 413 (586)
Q Consensus 338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ 413 (586)
+..++..+..|.....+.|++++|..+++.+.+ | +...+..++..+.+.+++++|+..+++... ..|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 455678888889999999999999999988873 4 456777888889999999999999999888 45554 56677
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTL 482 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 482 (586)
+..++.+.|++++|..+|+++.. ..+.+..++..+..++...|+.++|...|++. ...|....|+..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 77788889999999999999987 44556788888999999999999999999887 223444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00013 Score=63.47 Aligned_cols=239 Identities=13% Similarity=0.102 Sum_probs=153.8
Q ss_pred cCCHHHHHHHHHhCC-C-CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHH-HHHHHH
Q 007871 223 KGDISSARILFEHMP-I-KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALY-LFREML 299 (586)
Q Consensus 223 ~g~~~~a~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~m~ 299 (586)
.|++..++..-.... . .++..-.-+-++|...|.+.....-...-..+.....-.+......-++.+.-+. +.+.+.
T Consensus 21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a 100 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVA 100 (299)
T ss_pred hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHH
Confidence 556666555543332 2 3444455555667777766554433333333333333333333333444444433 344444
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CHhHHHH
Q 007871 300 CQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKK-NVISYNV 378 (586)
Q Consensus 300 ~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ 378 (586)
......+......-...|...+++++|........ +......=+..+.+..+.+-|...++.|.+- +-.+.+.
T Consensus 101 ~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQ 174 (299)
T KOG3081|consen 101 DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQ 174 (299)
T ss_pred hhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 44333343444444556888999999988876521 2233333445667778899999999999874 4456776
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 379 MIAGLGM----NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 379 l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
|..++.+ .+...+|.-+|++|-+. ..|++.+.+....++...|++++|..+++.... ....++.+...++-+-
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--KDAKDPETLANLIVLA 251 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--ccCCCHHHHHHHHHHH
Confidence 7777654 35688999999999875 789999999999999999999999999999988 4566778888887777
Q ss_pred hhcCCHHHHH-HHHHhC
Q 007871 455 SRAGELEQAL-NIVESM 470 (586)
Q Consensus 455 ~~~g~~~~A~-~~~~~~ 470 (586)
...|...++. +.+.+.
T Consensus 252 ~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 252 LHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHhCCChHHHHHHHHHH
Confidence 7777664443 344444
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0037 Score=64.00 Aligned_cols=113 Identities=12% Similarity=0.032 Sum_probs=74.4
Q ss_pred cCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHH
Q 007871 23 KTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSF 99 (586)
Q Consensus 23 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~ 99 (586)
+++..|.+-...+.+. .|+......+=.-...+. |+.++|..+++.. ...|..+...+-..|...++.++|..+
T Consensus 23 ~qfkkal~~~~kllkk--~Pn~~~a~vLkaLsl~r~-gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKK--HPNALYAKVLKALSLFRL-GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHh-cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 4566666666666655 344443322211134466 8888888888776 334666777778888888888888888
Q ss_pred HHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHH
Q 007871 100 YVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140 (586)
Q Consensus 100 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 140 (586)
|+..... .|+......++.++.+.+++.+-.+.--++.+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK 138 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK 138 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887665 45666666777777787777666555555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.1e-05 Score=71.85 Aligned_cols=113 Identities=19% Similarity=0.170 Sum_probs=58.1
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHH
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~ 496 (586)
...|.+++|+..++.+.+ ..|.|+..+......+...++.++|.+.++++ ...|+ ...+..+..++.+.|+.++|+
T Consensus 317 ~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 317 YLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 344555555555555555 34444444445555555555555555555554 23343 334444445555555555555
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
..++.....+|+++..|..|+++|...|+..+|...+
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 5555555555555555555555555555444444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00047 Score=64.81 Aligned_cols=235 Identities=12% Similarity=0.010 Sum_probs=135.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007871 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDV-ISVMGAISACAQVG-ALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352 (586)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (586)
+..+-..+...++.++|+.+..++++. .|+. ..|..-..++...| +++++...++.+.+...+ +..+|+....++
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 333444455566677777777777764 3333 33444444444445 456777777776665432 333444443334
Q ss_pred HhcCC--HHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc---CC-
Q 007871 353 MKCGS--LDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS---GL- 423 (586)
Q Consensus 353 ~~~g~--~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~- 423 (586)
.+.|+ .+++.++++.+.+ .+..+|+...-++...|+++++++.++++++.+ .-|...|+....++.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccc
Confidence 44444 2556666665553 456677777777777788888888888887753 22344555554444333 22
Q ss_pred ---HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC----
Q 007871 424 ---ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA----GELEQALNIVESM-PMKP-NLALWGTLLLACRNHQ---- 490 (586)
Q Consensus 424 ---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~---- 490 (586)
.++...+...++. ..+-|...|+.+...+... ++..+|.+++.+. ...| ++.....|+..|+...
T Consensus 196 ~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~ 273 (320)
T PLN02789 196 EAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTA 273 (320)
T ss_pred cccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccch
Confidence 2456666666666 3455677777777777662 3445677777665 2233 4555666666665422
Q ss_pred --------------ChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 491 --------------NVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 491 --------------~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
..++|..+++.+.+.+|-....|..
T Consensus 274 ~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~~ 312 (320)
T PLN02789 274 EFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWAW 312 (320)
T ss_pred hhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 3366777777775556655554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.6e-06 Score=77.51 Aligned_cols=123 Identities=16% Similarity=0.182 Sum_probs=98.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACR 487 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 487 (586)
....|+..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++.+. ...| +...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3455566666778888888888888773 244 4445778888888888888888776 3334 6666666777789
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 488 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
+.++++.|+.+.+++.+..|.+...|..|+.+|...|+++.|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999999988763
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.4e-07 Score=51.72 Aligned_cols=32 Identities=38% Similarity=0.538 Sum_probs=18.5
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 337 RITMDMIVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 337 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
|+.||..+|++++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.7e-05 Score=64.95 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=89.8
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 007871 395 CFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM 472 (586)
Q Consensus 395 ~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 472 (586)
.+++... ..|+. .....+...+...|++++|.+.++.+.. ..+.+...+..++.++...|++++|..++++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555 44543 4566667778888999999999988877 34567788888899999999999999988877 33
Q ss_pred CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHH
Q 007871 473 KP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 473 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
.| +...+..+...+...|++++|...++++.+..|++.....
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSE 123 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 34 5677777888889999999999999999999988876443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00012 Score=69.42 Aligned_cols=146 Identities=16% Similarity=0.043 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
.+.-..-.+...|.+++|+..++.++.. .|+. .-.......+...|+.++|.+.++++.. -.+......-.+..+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~a 383 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHH
Confidence 3333444455677888888888887773 4444 4444555667788888888888888877 233335666677788
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 007871 454 LSRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 531 (586)
|.+.|++.+|+.+++.. ..+.|+..|..|..+|...|+..++.... ++.|.-.|++++|..
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~ 446 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAII 446 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHH
Confidence 88888888888888776 23347778888888888888876665543 345677778888877
Q ss_pred HHHHHHhCCC
Q 007871 532 IRKMMRKRKI 541 (586)
Q Consensus 532 ~~~~m~~~~~ 541 (586)
.+....++..
T Consensus 447 ~l~~A~~~~~ 456 (484)
T COG4783 447 FLMRASQQVK 456 (484)
T ss_pred HHHHHHHhcc
Confidence 7777766543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0002 Score=75.25 Aligned_cols=150 Identities=8% Similarity=-0.034 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 007871 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM 353 (586)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 353 (586)
++..+..+|.+.|+.++|...++++++.. +-|....+.+...++.. ++++|..++..++.. |.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i 180 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI 180 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence 44445555555555555555555555544 33444455555555544 555555554443332 33
Q ss_pred hcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 007871 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE-GIPKDDLIFLGVLIACSHSGLATEGYRIFQ 432 (586)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (586)
..+++..+.++|.++...++. +.+.=.++.+.+... |..--..++..+...|...++|+++..+++
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~-------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSD-------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcc-------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 334455555555444432211 111112222222221 111122334444455556666666666666
Q ss_pred HhHHhhCCCCChHHHHHHHHHHh
Q 007871 433 SMKRHCGIEPKLEHYSCLVDLLS 455 (586)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~ 455 (586)
.+.+ -.+.|......++.+|.
T Consensus 248 ~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHh--cCCcchhhHHHHHHHHH
Confidence 6666 23334455555555554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0063 Score=62.36 Aligned_cols=386 Identities=15% Similarity=0.148 Sum_probs=222.4
Q ss_pred HHhcCChhHHHHHhccCCCCCh-hhHHHHHHH--HHhCCChhHHHHHHhhCC---CCChhHHHHHHHHHhhccCCHHHHH
Q 007871 157 YSKCGHMGCARSVFEGSEIKDL-VSWNLVLRG--FVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISSAR 230 (586)
Q Consensus 157 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~l~~~--~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~g~~~~a~ 230 (586)
....+++..|.+...++..+.+ ..|..++.+ +.+.|+.++|..+++... ..|..|...+-..| ...|+.++|.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y-~d~~~~d~~~ 97 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVY-RDLGKLDEAV 97 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHH-HHHhhhhHHH
Confidence 3456788888888777654322 234444444 468899999998888777 34667777777777 8999999999
Q ss_pred HHHHhCCC--CChhHHHHHHHHHHhcCCHH----HHHHHHhhCCCCChhHHHHHHHHHHh-CCCch---------HHHHH
Q 007871 231 ILFEHMPI--KDLISWNSMIDGYAKIGDLV----AAQQLFNEMPERNVFSWSIMIDGYAQ-HGNPK---------EALYL 294 (586)
Q Consensus 231 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~---------~A~~~ 294 (586)
.+|++... |+......+..+|.+.+++. .|.++++...+.--..|+. ++...+ ...++ .|.+.
T Consensus 98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHH
Confidence 99998874 34555566667777777664 4667777666555555554 333332 22222 34455
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHhccCChhHHHHHHH-HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 007871 295 FREMLCQG-VRPDVISVMGAISACAQVGALDLGKWIHV-FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN 372 (586)
Q Consensus 295 ~~~m~~~g-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 372 (586)
++.+.+.+ -.-+..-...-...+...|+.++|..++. ...+.-..-+...-+.-+..+...++|.+..++-.++...+
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 55555443 22222333333445567788889988883 34444344455555667778888888888777766665321
Q ss_pred HhHHHHHHHHHHh----------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhH
Q 007871 373 VISYNVMIAGLGM----------------NGFGEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGYRIFQSMK 435 (586)
Q Consensus 373 ~~~~~~l~~~~~~----------------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~ 435 (586)
..-|...+..+.+ .+..+...+..++..... .-++. ...-+..-+..-|+.+++.-.|-+-
T Consensus 257 ~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k- 334 (932)
T KOG2053|consen 257 NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRGPYLARLELDKRYKLIGDSEEMLSYYFKK- 334 (932)
T ss_pred CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccCcHHHHHHHHHHhcccCChHHHHHHHHHH-
Confidence 1113333332111 112222333333332221 11111 1112222233457777765444322
Q ss_pred HhhCCCC----ChHH---------HHHHHHHHhhcCC-HHHHH----------------------------HHHHhC---
Q 007871 436 RHCGIEP----KLEH---------YSCLVDLLSRAGE-LEQAL----------------------------NIVESM--- 470 (586)
Q Consensus 436 ~~~~~~~----~~~~---------~~~l~~~~~~~g~-~~~A~----------------------------~~~~~~--- 470 (586)
+|..| |... ...++..+....+ ...+. .++.+.
T Consensus 335 --fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ 412 (932)
T KOG2053|consen 335 --FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLT 412 (932)
T ss_pred --hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Confidence 34443 2111 2233333332221 11111 111111
Q ss_pred ---C------CCCCH---------HHHHHHHHHHHhcCCh---HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 007871 471 ---P------MKPNL---------ALWGTLLLACRNHQNV---TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529 (586)
Q Consensus 471 ---~------~~p~~---------~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 529 (586)
+ .-|+. .+.+.++..+.+.+|. -+|+.+++.....+|.|+.+-..++.+|.-.|-+..|
T Consensus 413 ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a 492 (932)
T KOG2053|consen 413 YEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDA 492 (932)
T ss_pred HhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhH
Confidence 0 01211 1234556667777664 4778888888899999999999999999999999999
Q ss_pred HHHHHHHHhCCCccCCCee
Q 007871 530 LRIRKMMRKRKIKKETGRS 548 (586)
Q Consensus 530 ~~~~~~m~~~~~~~~~~~~ 548 (586)
.++|+.+.-+.|+.+.-.+
T Consensus 493 ~~~y~tLdIK~IQ~DTlgh 511 (932)
T KOG2053|consen 493 YELYKTLDIKNIQTDTLGH 511 (932)
T ss_pred HHHHHhcchHHhhhccchH
Confidence 9999999888888876544
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.8e-05 Score=74.34 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 423 (586)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++.... .+.+...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 44556677777889999999999998877777777888888889999999999998874 33455666666777889999
Q ss_pred HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 007871 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474 (586)
Q Consensus 424 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 474 (586)
++.|..+.+++.. -.|.+..+|..|+.+|...|++++|+-.++.++.-|
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999988 455567899999999999999999999999886443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.9e-05 Score=62.42 Aligned_cols=113 Identities=13% Similarity=0.061 Sum_probs=64.4
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCh
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPK---LEHYSCLVDLLSRAGELEQALNIVESMP-MKPNL----ALWGTLLLACRNHQNV 492 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~----~~~~~l~~~~~~~~~~ 492 (586)
.++...+...++.+.++ .+.+ ....-.+...+...|++++|...|+... ..|+. .....+...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 55666666666666663 2222 2333345566666677777766666652 11332 2233345556667777
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 493 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
++|+..++.. ...+..+..+...+++|.+.|++++|+..|+..
T Consensus 102 d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777776552 223444556666777777777777777777653
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.2e-05 Score=69.65 Aligned_cols=106 Identities=18% Similarity=0.055 Sum_probs=77.9
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNV 492 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 492 (586)
..-+.+.+++.+|+..|.+.++ -.+-|...|..-..+|.+.|.++.|++-.+.. .+.| ....|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 4455667788888888888877 44556777777788888888888888777665 4555 356788888888888888
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 493 TLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 493 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
.+|++.|+++++++|++......|-.+-.+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 888888888888888888666666544333
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.5e-06 Score=62.17 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 007871 457 AGELEQALNIVESM-PMKP---NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532 (586)
Q Consensus 457 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 532 (586)
.|++++|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35566666666655 1112 334445566667777777777777776 555666666666667777777777777777
Q ss_pred HHH
Q 007871 533 RKM 535 (586)
Q Consensus 533 ~~~ 535 (586)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.8e-05 Score=72.66 Aligned_cols=105 Identities=11% Similarity=0.040 Sum_probs=82.2
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQN 491 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 491 (586)
-...+...|+++.|+..|+++++ ..+.+...|..++.+|...|++++|+..++++ ...| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34556677889999999988887 34556778888888888889999988888877 3344 56677777888888889
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+++|+..|+++++++|.++.+...+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999998888888887777665443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.4e-05 Score=57.83 Aligned_cols=93 Identities=24% Similarity=0.239 Sum_probs=74.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
+..++..+...|++++|...+++. ...| +...+..+...+...+++++|...++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677778888888888888776 3334 34566677777888899999999999999988888888889999999999
Q ss_pred CchHHHHHHHHHHhC
Q 007871 525 MWEHALRIRKMMRKR 539 (586)
Q Consensus 525 ~~~~A~~~~~~m~~~ 539 (586)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.6e-05 Score=59.46 Aligned_cols=93 Identities=17% Similarity=0.066 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---cchHHHHHH
Q 007871 447 YSCLVDLLSRAGELEQALNIVESMP-MKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADD---CGLYVLLSN 518 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 518 (586)
+..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...++.+....|.+ +.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344445555555555555554441 1121 2233444455555555666666666555555443 334555555
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 007871 519 IYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~~ 539 (586)
++.+.|++++|...++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 566666666666666555544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00039 Score=57.47 Aligned_cols=124 Identities=16% Similarity=0.138 Sum_probs=82.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHH
Q 007871 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD---LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK--LEHYSCL 450 (586)
Q Consensus 376 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l 450 (586)
|..++..+ ..++...+...++.+.... +.+. .....+...+...|++++|...|+.+... ...|+ ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 33444444 4777788888888887742 2221 23444556677888888888888888873 32222 2344557
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007871 451 VDLLSRAGELEQALNIVESMPMKP-NLALWGTLLLACRNHQNVTLAEVVVEGL 502 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 502 (586)
..++...|++++|+..++.....+ .+..+......+...|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 788888888888888887764332 4455566666788888888888888765
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.2e-05 Score=56.66 Aligned_cols=65 Identities=22% Similarity=0.187 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-CchHHHHHHHHHHhC
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG-MWEHALRIRKMMRKR 539 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 539 (586)
++..|..+...+...|++++|+..|+++++.+|.++.++..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46778888889999999999999999999999999999999999999999 799999999988653
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.9e-05 Score=59.36 Aligned_cols=106 Identities=8% Similarity=0.061 Sum_probs=70.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGI-EPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN----LALWGTLL 483 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 483 (586)
++..++..+...|++++|...+..+.....- +.....+..++.++.+.|++++|...++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566666777777777777777663111 111345566777777888888888877766 22222 45566667
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 484 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
.++...|++++|...++++.+..|+++.....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 77788888888888888888888887765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.5e-05 Score=55.34 Aligned_cols=58 Identities=19% Similarity=0.171 Sum_probs=51.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...+...|++++|+..|+++++..|.++.++..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556888999999999999999999999999999999999999999999999998764
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.6e-06 Score=48.31 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=26.1
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCc
Q 007871 79 MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDN 112 (586)
Q Consensus 79 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 112 (586)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6777777787778788888888877777777763
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.7e-05 Score=55.79 Aligned_cols=53 Identities=17% Similarity=0.239 Sum_probs=45.8
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
...|++++|+..|+++.+.+|.++.++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999887653
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00078 Score=62.52 Aligned_cols=154 Identities=14% Similarity=0.055 Sum_probs=111.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHH-------------
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH------------- 446 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------- 446 (586)
..+.-.|++++|...--...+. .++ ......-..++...++.+.|...|++... ..|+...
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHH
Confidence 3456678888888776666552 222 22222222244556788888888887755 3343221
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-PM-----KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+..=++-..+.|++..|.+.|.+. .+ +|+...|.....+..+.|+..+|+.-.+.+.+++|.-...+..-+.++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 112234456889999999999877 33 355667777777788999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007871 521 ADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~ 539 (586)
...++|++|.+.+++..+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999999998663
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.3e-06 Score=47.76 Aligned_cols=33 Identities=24% Similarity=0.498 Sum_probs=23.5
Q ss_pred chHHHHHHHHhcCCCchhHHHHHHHhHhCCCCC
Q 007871 78 YMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLV 110 (586)
Q Consensus 78 ~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~ 110 (586)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.3e-05 Score=66.06 Aligned_cols=156 Identities=13% Similarity=0.037 Sum_probs=105.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (586)
..-+.+.+++.+|+..|.+.++ +.|+ .+-|..-..+|++.|.++.|++-.+..+. -.+....+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 3457788999999999999999 5664 56677788899999999999998888877 33445789999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHH-HHhcCChH---HHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHH
Q 007871 459 ELEQALNIVESM-PMKPNLALWGTLLLA-CRNHQNVT---LAEVVVEGLVELK--ADDCGLYVLLSNIYADAGMWEHALR 531 (586)
Q Consensus 459 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~-~~~~~~~~---~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~ 531 (586)
++++|++.|++. .+.|+-.+|..=+.. -.+.+... .+...++....++ |+....++ ...-.......
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s~~~------~~l~nnp~l~~ 237 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRSMFN------GDLMNNPQLMQ 237 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchhhhc------cccccCHHHHH
Confidence 999999999887 677877666544433 33333332 3333333333333 33333332 23334445555
Q ss_pred HHHHHHhCCCccCC
Q 007871 532 IRKMMRKRKIKKET 545 (586)
Q Consensus 532 ~~~~m~~~~~~~~~ 545 (586)
....|...|....+
T Consensus 238 ~~~~m~~~~~~~~~ 251 (304)
T KOG0553|consen 238 LASQMMKDGALNGP 251 (304)
T ss_pred HHHHHhhcccccCc
Confidence 66666664433333
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.9e-05 Score=46.78 Aligned_cols=33 Identities=45% Similarity=0.649 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD 407 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 407 (586)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.1e-05 Score=46.21 Aligned_cols=33 Identities=39% Similarity=0.728 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 305 (586)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 477888888888888888888888888887776
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00041 Score=62.18 Aligned_cols=107 Identities=15% Similarity=0.071 Sum_probs=89.2
Q ss_pred CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH-hc--CChHHHHHHHHHHHhcCCCCcchHH
Q 007871 440 IEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACR-NH--QNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 440 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~-~~--~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
.+-|...|..|+.+|...|+.+.|..-|.+. ... +++..+..+..++. .. ....++..++++++..+|.|+....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 4568899999999999999999999999887 333 46777777776633 22 3567899999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 007871 515 LLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546 (586)
Q Consensus 515 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 546 (586)
.|+..+...|++.+|...++.|.+.....++.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 99999999999999999999999976665443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00027 Score=68.04 Aligned_cols=102 Identities=13% Similarity=-0.007 Sum_probs=82.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC
Q 007871 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458 (586)
Q Consensus 379 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (586)
....+...|++++|+..|++.+... +.+...+..+..+|...|++++|+..++++.. -.+.+...|..++.+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 3556778899999999999999842 33557888888899999999999999999988 34557888999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHH
Q 007871 459 ELEQALNIVESM-PMKPNLALWGTLL 483 (586)
Q Consensus 459 ~~~~A~~~~~~~-~~~p~~~~~~~l~ 483 (586)
++++|...|++. ...|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999887 4556544444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00026 Score=60.59 Aligned_cols=81 Identities=15% Similarity=0.053 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM-PMKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
..+..++..+...|++++|...+++. ...|+ ...+..+...+...|++++|+..++++.+..|.++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555666666667777777766655 11121 34566666777788888888888888888888888888788888
Q ss_pred HHhcCC
Q 007871 520 YADAGM 525 (586)
Q Consensus 520 ~~~~g~ 525 (586)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 777766
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00032 Score=52.96 Aligned_cols=90 Identities=20% Similarity=0.137 Sum_probs=41.3
Q ss_pred HHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChH
Q 007871 416 IACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVT 493 (586)
Q Consensus 416 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~ 493 (586)
..+...|++++|..+++.+.+ ..+.+...+..++.++...|++++|.+.++.. ...| +...+..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 333444444445444444443 12222334444445555555555555555443 1112 2234444445555555555
Q ss_pred HHHHHHHHHHhcCC
Q 007871 494 LAEVVVEGLVELKA 507 (586)
Q Consensus 494 ~a~~~~~~~~~~~p 507 (586)
.|...++++.+..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 55555555554443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00093 Score=57.16 Aligned_cols=131 Identities=11% Similarity=0.097 Sum_probs=90.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHH
Q 007871 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD--DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC 449 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 449 (586)
....+..+...+...|++++|...|++....+..+. ...+..+..++.+.|++++|...+++... ..+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 344566777778888888888888888876432222 35677788888888999999999888877 33445667777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 007871 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 525 (586)
++.+|...|+...+..-++.. ...+++|...++++.+.+|++ +..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 788888877766655433321 123677888888888888876 4455555544443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.9e-05 Score=52.67 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=52.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 484 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
..|...+++++|..+++++++.+|.++..+...+.++.+.|++++|.+.++...+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4578899999999999999999999999999999999999999999999999986544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.063 Score=53.73 Aligned_cols=231 Identities=14% Similarity=0.021 Sum_probs=142.9
Q ss_pred CCchhHHHHHHHHHHhcCChhHHHHHhccCCC-CCh------------hhHHHHHHHHHhCCChhHHHHHHhhCCCCChh
Q 007871 144 LCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI-KDL------------VSWNLVLRGFVECGEMGKAREVFDEMPQKDAI 210 (586)
Q Consensus 144 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 210 (586)
.|.+..|..|.......-+++.|...|-+... +.+ ..-.+ ..-+--|++++|.++|-.+...|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~a--ei~~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRA--EISAFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhH--hHhhhhcchhHhhhhhhccchhhh-
Confidence 47788888888887777777888777755432 111 11111 122335899999999988865543
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHhCCCC-----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhC
Q 007871 211 SWSIMIDGYRKKKGDISSARILFEHMPIK-----DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQH 285 (586)
Q Consensus 211 ~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~ 285 (586)
.+... .+.|++-...++++..... -..+++.+...+.....+++|.+.|...... ...+.++...
T Consensus 766 ----Aielr-~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~l 835 (1189)
T KOG2041|consen 766 ----AIELR-KKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRL 835 (1189)
T ss_pred ----hHHHH-HhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHH
Confidence 23444 6788888888888876533 2356888888888888888888887765431 1234455555
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 007871 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIF 365 (586)
Q Consensus 286 ~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 365 (586)
.++++-..+... ++.+....-.+..++...|.-++|.+.|-+. + .| ...+..+...++|.+|.++-
T Consensus 836 e~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 836 ELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHHHH
Confidence 555544333322 3555666667777888888888777665432 1 11 23455666777888888887
Q ss_pred hccCCCCHhHHHH--------------HHHHHHhcCChHHHHHHHHHHHH
Q 007871 366 YSMTKKNVISYNV--------------MIAGLGMNGFGEEALKCFAQMET 401 (586)
Q Consensus 366 ~~~~~~~~~~~~~--------------l~~~~~~~~~~~~A~~~~~~m~~ 401 (586)
+...-|.+.+.-+ -|..+.+.|+.-.|.+++.+|.+
T Consensus 902 q~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 902 QRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 7666554433211 12334455566566666666643
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=54.10 Aligned_cols=80 Identities=16% Similarity=0.206 Sum_probs=35.1
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007871 386 NGFGEEALKCFAQMETEGIP-KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 464 (586)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+. + +.+......++.++...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~-~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL-D-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH-H-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC-C-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 34555555555555552110 1223333345555555555555555555 110 1 112233333455555555555555
Q ss_pred HHHH
Q 007871 465 NIVE 468 (586)
Q Consensus 465 ~~~~ 468 (586)
++++
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00042 Score=59.10 Aligned_cols=94 Identities=14% Similarity=-0.099 Sum_probs=73.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
....+..++..+...|++++|+..+++. ...|+ ..++..+...+...|++++|+..++++.+..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456677777788888888888888776 22222 346778888899999999999999999999999888888888
Q ss_pred HHHH-------hcCCchHHHHHHHHH
Q 007871 518 NIYA-------DAGMWEHALRIRKMM 536 (586)
Q Consensus 518 ~~~~-------~~g~~~~A~~~~~~m 536 (586)
.++. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888666666554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0041 Score=51.27 Aligned_cols=134 Identities=12% Similarity=-0.023 Sum_probs=95.0
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---CHHHH
Q 007871 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-MKP---NLALW 479 (586)
Q Consensus 404 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p---~~~~~ 479 (586)
..|+...-..|..++.+.|++.+|...|++... .-+..|......+.++....+++..|...++... ..| ++...
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 456666666777788888888888888888877 2344567777778888888888888888887762 112 23344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
..+...+...|.+..|+..|+.+..-.|. +......+..+.++|+.++|..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 45667788888888888888888876554 445555666788888888877666655543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.003 Score=51.56 Aligned_cols=90 Identities=11% Similarity=-0.027 Sum_probs=76.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 007871 449 CLVDLLSRAGELEQALNIVESMP--MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 526 (586)
....-+...|++++|..+|.-+. ..-+..-|..|..++...+++++|+..|..+..++++||......+.+|...|+.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence 34455568899999999988762 2336777778888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 007871 527 EHALRIRKMMRK 538 (586)
Q Consensus 527 ~~A~~~~~~m~~ 538 (586)
+.|+..|+....
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999988866
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0023 Score=64.54 Aligned_cols=139 Identities=9% Similarity=-0.030 Sum_probs=65.3
Q ss_pred CCCHhHHHHHHHHHH--hcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcc--------CCHHHHHHHHHHhH
Q 007871 370 KKNVISYNVMIAGLG--MNG---FGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHS--------GLATEGYRIFQSMK 435 (586)
Q Consensus 370 ~~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~--------g~~~~A~~~~~~~~ 435 (586)
..+...|...+.+.. ..+ ....|..+|++..+ ..|+. ..+..+..++... ++...+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 346667777666633 222 35678888888877 56664 3333333222111 01122222222221
Q ss_pred HhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 436 RHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
.....+.+...|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|.++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 10012223344444444444455555555555544 2334444455555555555555555555555555555544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00016 Score=50.13 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=46.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 450 LVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
++..+...|++++|...|+++ ...| +...+..+..++...|++++|..+|+++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456777888888888888877 3345 566777777788888888888888888888888775
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00057 Score=63.25 Aligned_cols=131 Identities=11% Similarity=0.000 Sum_probs=92.4
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHh---HHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCC-CCH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSM---KRHCGIEP-KLEHYSCLVDLLSRAGELEQALNIVESM-------PMK-PNL 476 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~-p~~ 476 (586)
..|..|.+.|.-.|+++.|+...+.- .+++|... ....+..+..++.-.|+++.|.+.|+.. +.+ -..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45777777777788999888766542 23345443 3567888899999999999999988754 222 234
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc----C--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVEL----K--ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+...|...|.-..++++|+.++.+=+.+ + ......+..|+.+|...|..++|.-+.+.-.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45566777777778888998887765543 2 234567888999999999999998777665443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.067 Score=50.35 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=66.9
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 007871 348 LIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG 427 (586)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 427 (586)
-+.-+...|+...|.++-.+..-|+-.-|-..+.+++..+++++-.++... +-++..|..++.+|.+.|+..+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344445567777777777776667777777777777777777766654321 22345667777777777777777
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
..+..++ + +..-+..|.++|++.+|.+.--+.
T Consensus 257 ~~yI~k~------~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 257 SKYIPKI------P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHhC------C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 7666552 1 134456667777777776655443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0011 Score=64.00 Aligned_cols=118 Identities=11% Similarity=0.140 Sum_probs=85.4
Q ss_pred CCChhhHhHHHHHhccCCCCChHHHHHHHhcc-CCC-----CcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCccc
Q 007871 41 ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI-YQP-----NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYT 114 (586)
Q Consensus 41 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~-~~~-----~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 114 (586)
+-+......++. .+... .+++.+..++-+. ..| -..+.+++++.|...|..+.+++++..=...|+-||..+
T Consensus 63 ~vS~~dld~fvn-~~~~~-~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 63 PVSSLDLDIFVN-NVESK-DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCcHHHHHHHHh-hcCCH-hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 444445555666 55555 6777777777666 222 233567888888888888888888888888888888888
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 007871 115 YPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKC 160 (586)
Q Consensus 115 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 160 (586)
++.||..+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888777666666666555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=8.4e-05 Score=42.47 Aligned_cols=29 Identities=28% Similarity=0.573 Sum_probs=21.3
Q ss_pred hHHHHHHHHhcCCCchhHHHHHHHhHhCC
Q 007871 79 MHNTMIRGYTQSSNPQKALSFYVNMKRKG 107 (586)
Q Consensus 79 ~~~~ll~~~~~~~~~~~A~~~~~~m~~~~ 107 (586)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 67777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0098 Score=55.49 Aligned_cols=168 Identities=14% Similarity=0.125 Sum_probs=78.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 007871 275 WSIMIDGYAQHGNPKEALYLFREMLCQ----GVRPD-VISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349 (586)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (586)
|......|-..|++++|...|.+.... +-+.+ ...|.....++ +..+++.|...++. .+
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~---------------A~ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEK---------------AI 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHH---------------HH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHH---------------HH
Confidence 444456666667777777766665421 10000 01122222222 22244444444333 33
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHhhccC
Q 007871 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN-GFGEEALKCFAQMET----EGIPKD--DLIFLGVLIACSHSG 422 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g 422 (586)
..|...|++..|-..+. .+...|... |++++|++.|++..+ .| .+. ..++..+...+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhC
Confidence 44555555555544443 234555555 666777666666543 22 111 124555566666777
Q ss_pred CHHHHHHHHHHhHHhhCC----CCCh-HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 423 LATEGYRIFQSMKRHCGI----EPKL-EHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 423 ~~~~A~~~~~~~~~~~~~----~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
++++|.++|+++....-- ..+. ..+...+-++...|+...|.+.+++.
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777776552110 1111 12233344556667777777777664
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.077 Score=50.52 Aligned_cols=116 Identities=9% Similarity=0.083 Sum_probs=77.3
Q ss_pred hhccCC-HHHHHHHHHHhHHhhCCCCChHHHHHHH----HHHhhc---CCHH---HHHHHHHhCCCCC----CHHHHHHH
Q 007871 418 CSHSGL-ATEGYRIFQSMKRHCGIEPKLEHYSCLV----DLLSRA---GELE---QALNIVESMPMKP----NLALWGTL 482 (586)
Q Consensus 418 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~l 482 (586)
+.+.|. -++|+++++.+.+ --+.|...-+.+. ..|..+ ..+. .-...+++.+..| +...-+.+
T Consensus 389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~L 466 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFL 466 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHH
Confidence 445555 7788888888776 2233444333322 122211 1111 2223344444444 44566667
Q ss_pred HHH--HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 483 LLA--CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 483 ~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
..+ +..+|++.++.-.-.-+.+..| ++.+|..++-++....+|++|+.++..+
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 666 6789999999988888888888 9999999999999999999999999765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00064 Score=63.31 Aligned_cols=84 Identities=12% Similarity=0.032 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCe
Q 007871 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGN 555 (586)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~ 555 (586)
..++..+..++.+.+++..|+....++++.+|+|..+++.-+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----------------- 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----------------- 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----------------
Confidence 345667777888888888888888888888888888888888888888888888888888876
Q ss_pred EeEEecCCCCCCChhHHHHHHHHHHHHHhh
Q 007871 556 IKEFVSGEIFDVQSEELELVIQSFVKTTIE 585 (586)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 585 (586)
..|.++++...|..+.++.++
T Consensus 320 ---------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 320 ---------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------hCCCcHHHHHHHHHHHHHHHH
Confidence 357777777777777776653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.003 Score=58.62 Aligned_cols=135 Identities=12% Similarity=0.138 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+ .++.+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 357777777777778888888888887532 2233444444433 3335677778999998888 46677788888888
Q ss_pred HHhhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 453 LLSRAGELEQALNIVESMP-MKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~~-~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
.+...|+.+.|..+|++.- .-|. ...|...+..-.+.|+.+.+..+.+++.+.-|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 8888899999999988772 2233 358888888888889999999999888887776443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0044 Score=62.51 Aligned_cols=138 Identities=11% Similarity=0.035 Sum_probs=100.9
Q ss_pred CCCCCCHHHHHHHHHHhhc--c---CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc--------CCHHHHHHHHH
Q 007871 402 EGIPKDDLIFLGVLIACSH--S---GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA--------GELEQALNIVE 468 (586)
Q Consensus 402 ~g~~p~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~ 468 (586)
.+.+.+...|..++++... . ++...|..+|++..+ ..|.+...+..+..+|... ++...+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3456777888888887533 2 347789999999988 3444556666665555332 12334444444
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 469 SM----PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 469 ~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
+. ....++..+..+.......|++++|...++++.+++| +...|..++.++...|+.++|.+.+++....+..
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 42 1233566777776667778999999999999999999 5789999999999999999999999998775544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0025 Score=51.83 Aligned_cols=91 Identities=7% Similarity=-0.088 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
....+...+...|++++|..+|+-+.. +.|.. .-|..|..+|...|++++|+..|..... --+.|+..+-.++.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c 112 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHH
Confidence 333344444455555555555555544 23322 3344444444555555555555555544 123344455555555
Q ss_pred HhhcCCHHHHHHHHHh
Q 007871 454 LSRAGELEQALNIVES 469 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~ 469 (586)
+...|+.+.|.+.|+.
T Consensus 113 ~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 113 YLACDNVCYAIKALKA 128 (157)
T ss_pred HHHcCCHHHHHHHHHH
Confidence 5555555555554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.007 Score=51.55 Aligned_cols=80 Identities=11% Similarity=0.042 Sum_probs=48.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK--DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 451 (586)
..|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...++.... ..+.....+..++
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence 345556666667777777777777776532222 123566666777777777777777777766 2333445555555
Q ss_pred HHHh
Q 007871 452 DLLS 455 (586)
Q Consensus 452 ~~~~ 455 (586)
.++.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0002 Score=50.20 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=27.7
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
..|++++|.++|+.+.. ..|.+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35566666666666655 23335555555666666666666666666555
|
... |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00016 Score=41.22 Aligned_cols=29 Identities=38% Similarity=0.671 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 007871 274 SWSIMIDGYAQHGNPKEALYLFREMLCQG 302 (586)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 302 (586)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777777665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00096 Score=50.08 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=67.1
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHhHhCCC-CCCcccHHHHHHHHhccCC--------chHHHHHHHHHHHhCCCCchhHH
Q 007871 80 HNTMIRGYTQSSNPQKALSFYVNMKRKGL-LVDNYTYPFVLKACGVLMG--------LVEGTEIHGEVVKMGFLCDVFVV 150 (586)
Q Consensus 80 ~~~ll~~~~~~~~~~~A~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~ 150 (586)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++.- .-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556777778999999999999999999 8999999999998876532 33467899999999999999999
Q ss_pred HHHHHHHHh
Q 007871 151 NGLIGMYSK 159 (586)
Q Consensus 151 ~~li~~~~~ 159 (586)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0022 Score=48.25 Aligned_cols=81 Identities=10% Similarity=0.022 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------ChhHHHHHHHHHHHcCCCCchhH
Q 007871 274 SWSIMIDGYAQHGNPKEALYLFREMLCQGV-RPDVISVMGAISACAQVG--------ALDLGKWIHVFMKRSRITMDMIV 344 (586)
Q Consensus 274 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 344 (586)
+....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-....+|++|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334456667777999999999999999999 899999999999876543 23456778899999999999999
Q ss_pred HHHHHHHHHh
Q 007871 345 QTALIDMYMK 354 (586)
Q Consensus 345 ~~~l~~~~~~ 354 (586)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0001 Score=42.81 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 007871 498 VVEGLVELKADDCGLYVLLSNIYADAGMWEHALR 531 (586)
Q Consensus 498 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 531 (586)
+|+++++.+|+++.+|+.++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3788999999999999999999999999999863
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.06 Score=53.88 Aligned_cols=330 Identities=11% Similarity=0.031 Sum_probs=169.2
Q ss_pred CChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCC-CCCCcccHHHHHHHHhccCCchHHHHHHHHH
Q 007871 60 LNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKG-LLVDNYTYPFVLKACGVLMGLVEGTEIHGEV 138 (586)
Q Consensus 60 ~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 138 (586)
|++++|++++-++.+.|. -+..+.+.|+|-...++++.--... -+.-...++.+...++....++.|.+.+..-
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999988876654 3556667778877777765421110 0111235677777777777777777776543
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHH
Q 007871 139 VKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDG 218 (586)
Q Consensus 139 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~ 218 (586)
.. ....+.++.+..++++-..+...+++. ....-.+...+...|..++|.+.|-+-..|. ..+..
T Consensus 823 ~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~t 887 (1189)
T KOG2041|consen 823 GD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHT 887 (1189)
T ss_pred cc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHH
Confidence 21 123456666666666666665555543 3345566677777777777777766655443 23445
Q ss_pred HhhccCCHHHHHHHHHhCCCCChhHHHHH-HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHH
Q 007871 219 YRKKKGDISSARILFEHMPIKDLISWNSM-IDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFRE 297 (586)
Q Consensus 219 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 297 (586)
| ...++|.+|.++-++..-|.+.+.-+- ...+...++.-+|+ ..+.+.|++-.|.+++.+
T Consensus 888 C-v~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaI------------------e~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 888 C-VELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAI------------------EKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred H-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHH------------------HHhhhcccchhHHHHHHH
Confidence 5 667777777777776665555443221 11122233333332 334455555555566655
Q ss_pred HHH----CCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-CCC
Q 007871 298 MLC----QGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT-KKN 372 (586)
Q Consensus 298 m~~----~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~ 372 (586)
|.+ .+.++-..--..++.++. ..+..++.+-.+....+|...+... +...|-.+++.++.+..- -..
T Consensus 949 mae~e~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~WrgAE 1020 (1189)
T KOG2041|consen 949 MAEREQEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWRGAE 1020 (1189)
T ss_pred HhHHHhhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhhhHH
Confidence 543 233332221111222211 1122223333333333443222211 112233333333333211 122
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 373 VISYNVMIAGLGMNGFGEEALKCFAQMET-EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
...|..|.+-....|..+.|++.--.+.. ..+-|....|..+.-+-+....+...-+.|-++..
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 33444455556667777777765433332 12556666676666655555555555555555544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0022 Score=59.55 Aligned_cols=129 Identities=10% Similarity=0.126 Sum_probs=101.5
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR-AGELEQALNIVESM--PMKPNLALWGTLLLA 485 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 485 (586)
.+|..++....+.+..+.|..+|.++.+ ....+..+|...+..-.. .++.+.|.++|+.. ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4677888888888889999999999986 333455667666666444 56677799999987 344578889999999
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDC---GLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...|+.+.|..+|++++..-|... .+|...+..=.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765544 68999999999999999999999998764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00049 Score=48.36 Aligned_cols=65 Identities=22% Similarity=0.234 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCC
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQ-NVTLAEVVVEGLVELKA 507 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 507 (586)
+...|..++..+...|++++|+..|++. ...| +...|..+..++...| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3456677777777777777777777766 2333 5666777777777777 68888888888887776
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0024 Score=50.01 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=26.4
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPK--LEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
..++-..|+.++|+.+|++... .|.... ...+-.+...|...|++++|..++++.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344455555555555555555 243332 223334444555555555555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0054 Score=48.03 Aligned_cols=90 Identities=14% Similarity=0.129 Sum_probs=68.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC---ChHHHHHHHH
Q 007871 378 VMIAGLGMNGFGEEALKCFAQMETEGIPKDD--LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP---KLEHYSCLVD 452 (586)
Q Consensus 378 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~~ 452 (586)
.+..++-..|+.++|+.+|++....|..... ..+..+...+...|++++|..+++....+ .+. +......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHH
Confidence 3456677889999999999999998876653 46777888899999999999999998874 222 3333444556
Q ss_pred HHhhcCCHHHHHHHHHh
Q 007871 453 LLSRAGELEQALNIVES 469 (586)
Q Consensus 453 ~~~~~g~~~~A~~~~~~ 469 (586)
++...|+.++|++.+-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 77888999998887654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.015 Score=54.22 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=77.7
Q ss_pred HHHHHHHHhhcc-CCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC---C-----CCCH
Q 007871 410 IFLGVLIACSHS-GLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMP---M-----KPNL 476 (586)
Q Consensus 410 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~ 476 (586)
.+..+...|... |+++.|.+.|++...-+..... ..++..++..+.+.|++++|.++|++.. . +.+.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 344455567777 8999999999988762211111 3566778899999999999999998762 1 1122
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc-----hHHHHHHHHHhc--CCchHHHHHHHH
Q 007871 477 -ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG-----LYVLLSNIYADA--GMWEHALRIRKM 535 (586)
Q Consensus 477 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~--g~~~~A~~~~~~ 535 (586)
..+...+-++...||...|...+++....+|.-.. +...|+.++-.. ..+++|+.-|+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 22334444567789999999999999988875332 344445444322 334445444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.032 Score=50.48 Aligned_cols=171 Identities=11% Similarity=-0.002 Sum_probs=98.5
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC--CCH-h---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhh
Q 007871 348 LIDMYMKCGSLDEARRIFYSMTK--KNV-I---SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD--LIFLGVLIACS 419 (586)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~--~~~-~---~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~ 419 (586)
....+...|++++|.+.|+.+.. |+. . ..-.++.++.+.+++++|...+++..+. .|+. ..+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence 33444556777777777777663 222 1 1234556677788888888888887773 2322 22222222221
Q ss_pred --ccC---------------C---HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 007871 420 --HSG---------------L---ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALW 479 (586)
Q Consensus 420 --~~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 479 (586)
..+ + ...|...|+.++++ .| + ..-..+|...+..+...-.. .-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP-~-------------S~ya~~A~~rl~~l~~~la~-~e 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YP-N-------------SQYTTDATKRLVFLKDRLAK-YE 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--Cc-C-------------ChhHHHHHHHHHHHHHHHHH-HH
Confidence 111 1 22344555555542 22 2 22223333333322110000 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDC---GLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
..+...|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..++|..+...+.
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1344558899999999999999999877755 456778889999999999999887664
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0021 Score=58.56 Aligned_cols=84 Identities=13% Similarity=0.020 Sum_probs=39.9
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCc
Q 007871 455 SRAGELEQALNIVESM-PMKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADD---CGLYVLLSNIYADAGMW 526 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~ 526 (586)
.+.|++++|...|+.. ...|+ +..+..+..+|...|++++|...|+++.+..|++ +.++..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 3345555555544444 11121 2233444444555555555555555555544443 23334445555555555
Q ss_pred hHHHHHHHHHHh
Q 007871 527 EHALRIRKMMRK 538 (586)
Q Consensus 527 ~~A~~~~~~m~~ 538 (586)
++|..+|+++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.16 Score=48.46 Aligned_cols=442 Identities=12% Similarity=0.070 Sum_probs=206.9
Q ss_pred HHHHccCchHHHHHHHHHHHcCCCCChhhH------hHHHHHhccCCCCChHHHHHHHhcc--CCCCcchHHHHHHHH--
Q 007871 18 LLQISKTTTHILQILAQLTTNDLITEPFTL------SQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMHNTMIRGY-- 87 (586)
Q Consensus 18 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~ll~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ll~~~-- 87 (586)
.|+..+++.++.+++..+.+.. ..++..+ +.++. +|... +.+.....+... ..| ...|-.|..++
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~griln-Affl~--nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILN-AFFLN--NLDLMEKQLMELRQQFG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHH-HHHHh--hHHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4667788888888888887753 3333333 34555 45443 566666555555 223 44555555443
Q ss_pred hcCCCchhHHHHHHHhHhC--CCCC---Cccc---------HHHHHHHHhccCCchHHHHHHHHHHHhCCC----CchhH
Q 007871 88 TQSSNPQKALSFYVNMKRK--GLLV---DNYT---------YPFVLKACGVLMGLVEGTEIHGEVVKMGFL----CDVFV 149 (586)
Q Consensus 88 ~~~~~~~~A~~~~~~m~~~--~~~~---~~~~---------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 149 (586)
.+.+.++.|++.+..-.+. +.+| |... =+..+..+...|++.+++.++..+...=++ -+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4678888888887766554 2111 1111 134455666778888888888777654333 56777
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhh----ccCC
Q 007871 150 VNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRK----KKGD 225 (586)
Q Consensus 150 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~----~~g~ 225 (586)
|+.++-+++++=-.+ +-+.+...=..-|..++..|.+.=+.-++.. |++. -|.......++..... +.--
T Consensus 170 yd~~vlmlsrSYfLE----l~e~~s~dl~pdyYemilfY~kki~~~d~~~-Y~k~-~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLE----LKESMSSDLYPDYYEMILFYLKKIHAFDQRP-YEKF-IPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHHHHHHhHHHHHH----HHHhcccccChHHHHHHHHHHHHHHHHhhch-HHhh-CcHHHHHHHHHHHHHhCCHhhccH
Confidence 777666655532111 1111111111234445545443211111100 0000 1222222222222200 1111
Q ss_pred HHHHHHHHHhCC-CCC-hhHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCChhHHHHHHHHHHhCCCchHHHHHH
Q 007871 226 ISSARILFEHMP-IKD-LISWNSMIDGYAKIGDLVAAQQLFNEMP--------ERNVFSWSIMIDGYAQHGNPKEALYLF 295 (586)
Q Consensus 226 ~~~a~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~ 295 (586)
+-.+.+.|++-- .|+ ..+...+...+.. +.+++..+.+.+. +.=+.++..++....+.++...|.+.+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 222333333221 222 2223333333333 3333333333322 133456777777778888888887777
Q ss_pred HHHHHCCCCCCHHHHHHH-------HHHHh-ccC---ChhHHHHHHHHHHHcCCCCchhHHHHHHHH---HHhcC-CHHH
Q 007871 296 REMLCQGVRPDVISVMGA-------ISACA-QVG---ALDLGKWIHVFMKRSRITMDMIVQTALIDM---YMKCG-SLDE 360 (586)
Q Consensus 296 ~~m~~~g~~~~~~~~~~l-------~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g-~~~~ 360 (586)
.-+.-. .|+...-..+ -+..+ ... +...-..+|..+...++..- .....|+.+ +-+.| .-++
T Consensus 322 ~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 322 ALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHH
Confidence 666543 3333221111 11111 111 12222334444444433211 111122221 22333 3666
Q ss_pred HHHHHhccCC---CCHhHHHHHH----HHHHh---cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--hhccCCH
Q 007871 361 ARRIFYSMTK---KNVISYNVMI----AGLGM---NGFGEEALKCFAQMETEGIPKDD----LIFLGVLIA--CSHSGLA 424 (586)
Q Consensus 361 a~~~~~~~~~---~~~~~~~~l~----~~~~~---~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~--~~~~g~~ 424 (586)
|..+++.+.+ -|...-|... ..|.+ .....+-+.+-+-..+.|++|-. ..-+.|.+| +..+|++
T Consensus 399 alnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 399 ALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 7777766653 2333222221 12211 12233333444444556666533 233333333 3456777
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 007871 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG 480 (586)
Q Consensus 425 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 480 (586)
.++.-.-..+.+ +.|++.+|..++-++....++++|.+++..++ |+..+++
T Consensus 479 ~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 479 HKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred HHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 776554444433 56777777777777777777777777777764 4444443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.18 Score=48.05 Aligned_cols=135 Identities=15% Similarity=0.112 Sum_probs=101.6
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 007871 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 450 (586)
-..+|...+..-.+....+.|..+|-+..+.| +.++...++.++..++ .|++..|.++|+.-.. .++.+...-+..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHH
Confidence 34567777888888888899999999999888 5667777888877554 5788889999988777 344444445566
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 451 VDLLSRAGELEQALNIVESMP--MK--PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~--~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
+.-+.+.++-+.|..+|+..- +. .-...|..++..-..-|+...+..+-+++.+.-|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 777788899999999998551 11 225678888888888889888888888888877653
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.048 Score=45.19 Aligned_cols=124 Identities=10% Similarity=-0.001 Sum_probs=76.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHH
Q 007871 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTK----KNVISYNVMIAGLGMNGFGEEALKCFAQMETEG---IPKDDLIF 411 (586)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---~~p~~~~~ 411 (586)
-|+...-..|..+....|+..+|...|++... .|....-.+.++....+++..|...++++-+.. -.| .+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p--d~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP--DGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC--Cch
Confidence 44555555566666667777777776666552 466666666667777777777777777766532 222 234
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007871 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467 (586)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (586)
..+.+.+...|.+.+|+..|+.... .-|+...-......+.++|+.++|..-+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4556667777777777777777766 2455554445556667777666654433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.024 Score=49.68 Aligned_cols=131 Identities=10% Similarity=-0.060 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHH-----HHH
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS-----CLV 451 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~ 451 (586)
++++..+.-.|.+.-.+..+++.++...+.++.....|++.-.+.||.+.|...|++..+. .-..+....+ ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhh
Confidence 4444444455555555566666655433444455555555555666666666666655442 1122222222 222
Q ss_pred HHHhhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 452 DLLSRAGELEQALNIVESMPMK--PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
..|.-+.++.+|...++++... .++...+.-.-+..-.|+..+|++..+.+.+..|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 3344444555555555555211 12333333333333445555555555555555544
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0017 Score=62.12 Aligned_cols=65 Identities=15% Similarity=-0.067 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL---YVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...++.+..+|...|++++|+..|+++++++|+++.. |+.++.+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45566666666666666666666666666666666633 666666666666666666666666554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.08 Score=50.32 Aligned_cols=161 Identities=16% Similarity=0.004 Sum_probs=95.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC-------CHhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007871 347 ALIDMYMKCGSLDEARRIFYSMTKK-------NVISYNVMIAGLGM---NGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416 (586)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 416 (586)
.++-.|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+......+++.++..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455567777777777777776642 12222233445555 7888888888888666556777778877777
Q ss_pred Hhhc---------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH----HHHHHH---HhC----C---CC
Q 007871 417 ACSH---------SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE----QALNIV---ESM----P---MK 473 (586)
Q Consensus 417 ~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~----~---~~ 473 (586)
.|-. ....++|...|.+.-. +.|+...=-.++..+...|... +..++- ... + ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6521 2246677777776533 3444333223333333344321 222221 111 1 12
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 474 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
.+-.-+.+++.++.-.||+++|.+.++++.++.|+.-
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 3445556788888889999999999999999876644
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0086 Score=54.59 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=69.1
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHH
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK---LEHYSCLVDLLSRAGELEQALNIVESM----PMKP-NLALWGT 481 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ 481 (586)
.|...+....+.|++++|...|+.+.+. .|-+ ...+..++.+|...|++++|...|+.+ +..| ....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444443345567788888888887773 2222 356667788888888888888888776 2222 3455555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcch
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGL 512 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 512 (586)
+...+...|++++|...|+++++..|++...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 6666778899999999999999888887643
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00069 Score=42.35 Aligned_cols=42 Identities=26% Similarity=0.285 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
..+..+..+|...|++++|+++|+++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 457778889999999999999999999999999999988864
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0094 Score=57.73 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHc--CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCHhHH
Q 007871 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRS--RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK----KNVISY 376 (586)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~ 376 (586)
.+.+...+..+++.+....+++.+..++...... ....-..+..+++..|...|..+++..++..=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445555556666666666666666655555443 1112223334566666666666666666554332 566666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 420 (586)
+.|+..+.+.|++..|.++...|..++...++.|+...+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666666666666555555555555544444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.024 Score=49.62 Aligned_cols=170 Identities=11% Similarity=0.001 Sum_probs=117.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--C--------hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHH
Q 007871 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPER--N--------VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISV 310 (586)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 310 (586)
...++.|.+.+.-...+++-...++.-..| . ....+.++..+...|.+.-....+++.++...+.++...
T Consensus 136 gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~ 215 (366)
T KOG2796|consen 136 GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLL 215 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHH
Confidence 334556666665555555555555544331 2 234456777778888999999999999987767788888
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHH
Q 007871 311 MGAISACAQVGALDLGKWIHVFMKRSRITMD-----MIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAG 382 (586)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 382 (586)
..+.+.-.+.||.+.|..++++..+..-..+ ..+.......|.-.+++..|...+.++.. .++..-|.-.-.
T Consensus 216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 8899999999999999999997765533333 33333444556667888888888887774 345555555555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFL 412 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 412 (586)
..-.|+..+|++.++.|.. ..|.+.+-+
T Consensus 296 llYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 296 LLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 5567889999999999988 456554443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.023 Score=53.17 Aligned_cols=173 Identities=14% Similarity=0.047 Sum_probs=103.5
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCHh-HHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-------------
Q 007871 350 DMYMKCGSLDEARRIFYSMTKKNVI-SYNVMIAG--LGMNGFGEEALKCFAQMETEGIPKDDLIFLG------------- 413 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~~--~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~------------- 413 (586)
.++...|++++|.+.-..+.+-|.. .+...+++ +...++.+.+...|++.+. ..|+...-..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHh
Confidence 4566677777777766655543322 22333333 3456677788888877766 4455432111
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHh--hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH---HHHHHHHh
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRH--CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWG---TLLLACRN 488 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~---~l~~~~~~ 488 (586)
-.+-..+.|++..|.+.|.+.+.- .+..++...|........+.|+..+|+.-.+... ..|+.... .-..++..
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al-~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL-KIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh-hcCHHHHHHHHHHHHHHHH
Confidence 122335678888888888887651 1334456667777778888889988888877662 22333222 22334667
Q ss_pred cCChHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCC
Q 007871 489 HQNVTLAEVVVEGLVELKAD--DCGLYVLLSNIYADAGM 525 (586)
Q Consensus 489 ~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~ 525 (586)
.++|++|.+-++++.+.... ....+......+.++.+
T Consensus 334 le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence 78888898888888886533 44444444444444433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.22 Score=45.13 Aligned_cols=58 Identities=21% Similarity=0.054 Sum_probs=33.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCH-HHH---HHHHHHHhccCChhHHHHHHHHHHHcC
Q 007871 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDV-ISV---MGAISACAQVGALDLGKWIHVFMKRSR 337 (586)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~ 337 (586)
....+...|++++|...|+++...- |+. ... -.+..++.+.++++.|...++...+..
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3444555677777777777776642 222 221 234455566666666666666666554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0013 Score=47.51 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVEL----KAD---DCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.++..+...|...|++++|+..++++++. ++. -..++..++.+|...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45566666777777777777777777753 112 245677788888888888888888887653
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.051 Score=49.15 Aligned_cols=107 Identities=17% Similarity=0.098 Sum_probs=84.2
Q ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-CHHHH
Q 007871 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG---ELEQALNIVESM-PMKP-NLALW 479 (586)
Q Consensus 405 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~ 479 (586)
+-|...|..|..+|...|+.+.|...|....+ -.++++..+..+..++..+. +..++..+|+++ ..+| |....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 45668899999999999999999999999988 45667778888887765443 466788888887 3444 56666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchH
Q 007871 480 GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 513 (586)
..+...+...|++.+|...++.|.+..|.+..-.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 6677779999999999999999999887766433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.11 Score=40.43 Aligned_cols=141 Identities=11% Similarity=0.059 Sum_probs=87.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
+.-.|..++..++..+... ..+..-+++++--....-+=+-..++++.+-+-+ |. ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF----Di----------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIF----DI----------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-----G----------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------hhhcchHH
Confidence 4456778888888887765 2344556666654444444455555555554421 11 23444555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 463 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
....+-.+. .+....+..+..+..+|.-+.-.+++..+.+.+..+|.+...++.+|.+.|+..++.+++.+.-+.|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 554444442 345566777788899999999999999998877889999999999999999999999999999999975
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0032 Score=44.76 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=46.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 007871 452 DLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 516 (586)
.+|.+.+++++|.++++.+ ...| ++..+......+...|++++|.+.++++.+..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4667778888888887776 3334 556666677778888888888888888888888776554433
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.54 Score=47.97 Aligned_cols=321 Identities=13% Similarity=0.071 Sum_probs=179.3
Q ss_pred HHHHHHHHhCCChhHHHHHHhhCCCCC---hhHHHHHHHHHhhc--cCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhc
Q 007871 182 NLVLRGFVECGEMGKAREVFDEMPQKD---AISWSIMIDGYRKK--KGDISSARILFEHMPI--KDLISWNSMIDGYAKI 254 (586)
Q Consensus 182 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~--~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~ 254 (586)
..++.-++..+.+..|.++-..+..|. ...|.........+ ..+-+.+..+-+++.. .....|..........
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQE 520 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhc
Confidence 345566666777777777777776443 33333333333111 2233344444444444 3556677788888888
Q ss_pred CCHHHHHHHHhhCCCC--------ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 007871 255 GDLVAAQQLFNEMPER--------NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326 (586)
Q Consensus 255 g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 326 (586)
|+.+-|..+++.=... +..-+...+.-..+.||++....++-.+.+.- +...|... ..+...|
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~------l~~~p~a 591 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMT------LRNQPLA 591 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHH------HHhchhh
Confidence 8888888877665431 22334445556667777777777776665431 11112111 1233344
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc------CCCCHhHHHHHHHHHHhcCC----------hH
Q 007871 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSM------TKKNVISYNVMIAGLGMNGF----------GE 390 (586)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------~~~~~~~~~~l~~~~~~~~~----------~~ 390 (586)
..+|....+..-. ..+-+.|-...+...+-.+.-+- ..+-..........+.+... ..
T Consensus 592 ~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 592 LSLYRQFMRHQDR------ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred hHHHHHHHHhhch------hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 5555544332100 11222222222222221111111 01112222223333333322 11
Q ss_pred HHHHHHHHHHH-CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 007871 391 EALKCFAQMET-EGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES 469 (586)
Q Consensus 391 ~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 469 (586)
+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+- ||...|..-+.+++..+++++-+++-++
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 11222233322 22223334556666667788999999887766533 7888888889999999999998888777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 470 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
.+. +.-|.....+|.+.|+.++|.+++-+.-.. .....+|.+.|++.+|.++-
T Consensus 741 kks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 741 KKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cCC---CCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHH
Confidence 642 455677888999999999999988665332 16778899999999988764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.35 Score=45.31 Aligned_cols=244 Identities=16% Similarity=0.156 Sum_probs=152.9
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHH
Q 007871 282 YAQHGNPKEALYLFREMLCQGVRPDVI--SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLD 359 (586)
Q Consensus 282 ~~~~~~~~~A~~~~~~m~~~g~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 359 (586)
-.-.|+++.|.+-|+.|... |... .+..+.-...+.|+.+.|.++-+..-..- +.-.......+...+..|+|+
T Consensus 130 al~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 130 ALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 34468888888888888752 3222 23334444467777777777776665543 223456677788888888888
Q ss_pred HHHHHHhccC-----CCCHhH--HHHHHHHHH---hcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHH
Q 007871 360 EARRIFYSMT-----KKNVIS--YNVMIAGLG---MNGFGEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 360 ~a~~~~~~~~-----~~~~~~--~~~l~~~~~---~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~ 428 (586)
.|+++++.-. ++++.- --.|+.+-. -..+...|...-.+..+ +.|+.. .-..-..++.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 8888887544 343321 122222211 12345555555555444 667653 3444456788999999999
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM----PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLV 503 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 503 (586)
.+++.+-+ ..|.+.++..+ .+.+.|+. +..-+++. ..+| +......+..+....|++..|..-.+.+.
T Consensus 284 ~ilE~aWK---~ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~ 356 (531)
T COG3898 284 KILETAWK---AEPHPDIALLY--VRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA 356 (531)
T ss_pred hHHHHHHh---cCCChHHHHHH--HHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 99999877 24555544332 33455543 22222222 2334 56667777788888999999988888877
Q ss_pred hcCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 007871 504 ELKADDCGLYVLLSNIYADA-GMWEHALRIRKMMRKR 539 (586)
Q Consensus 504 ~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 539 (586)
...|. ..+|..|+++-... |+-.+++..+-+..+.
T Consensus 357 r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 357 REAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77665 44777788876555 9999999888877654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.017 Score=54.11 Aligned_cols=96 Identities=11% Similarity=-0.006 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
.++..+.-+|.+.+++..|++..++. -.++|......-..+|...|+++.|+..|+++++.+|.|..+...++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 46778899999999999999998877 2446788888888899999999999999999999999999999999988877
Q ss_pred cCCchHH-HHHHHHHHhCC
Q 007871 523 AGMWEHA-LRIRKMMRKRK 540 (586)
Q Consensus 523 ~g~~~~A-~~~~~~m~~~~ 540 (586)
..++.+. .+.|..|-..-
T Consensus 338 ~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 7766655 77898886543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.012 Score=50.41 Aligned_cols=87 Identities=11% Similarity=0.120 Sum_probs=60.8
Q ss_pred CChhHHHHHHHHHHh-----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------------CChhHHHH
Q 007871 270 RNVFSWSIMIDGYAQ-----HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV----------------GALDLGKW 328 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~----------------~~~~~a~~ 328 (586)
.+-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.|+..+-+. .+.+-|..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 455555555555543 355666666777777777777777787777776543 23456788
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 007871 329 IHVFMKRSRITMDMIVQTALIDMYMKCG 356 (586)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (586)
+++.|...|+-||..++..+++.+++.+
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 8888888888888888888888876544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.44 Score=45.55 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhC-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCG-IEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLALW-GTLLLA 485 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~ 485 (586)
..|...+++..+..-.+.|..+|-++.+. + ..+++.++++++.-+ ..|+..-|..+|+-- ..-||...| ...+..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45677777777888899999999999985 5 677888898888866 578888999999854 334555554 455666
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADD--CGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
+...++-..|..+|++.++.-..+ ..+|..++.--..-|+...+..+=++|.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 788899999999999877754333 6688888888888888877776666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.069 Score=46.97 Aligned_cols=49 Identities=14% Similarity=0.072 Sum_probs=38.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCCchHHH
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCG---LYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~ 530 (586)
+...|.+.|.+..|..-++.+++.-|+.+. +...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 455588999999999999999999888764 4666788899999888544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.097 Score=51.99 Aligned_cols=22 Identities=14% Similarity=0.422 Sum_probs=14.6
Q ss_pred HHHHhCCCchHHHHHHHHHHHC
Q 007871 280 DGYAQHGNPKEALYLFREMLCQ 301 (586)
Q Consensus 280 ~~~~~~~~~~~A~~~~~~m~~~ 301 (586)
.+|.+.|+-.+|..+++++-..
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 3566677777777777776543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.097 Score=52.01 Aligned_cols=175 Identities=15% Similarity=0.106 Sum_probs=86.0
Q ss_pred HHHHHHHHHhCCC--chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007871 275 WSIMIDGYAQHGN--PKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352 (586)
Q Consensus 275 ~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (586)
++..-.+|.+..+ +-+.+.-+++|.+.|-.|+... +...|+-.|.+.+|..+|.+ .|.. +..+++|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmy 668 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMY 668 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHH
Confidence 3333445555444 3345555677788887787754 34456667777777777753 2221 2334444
Q ss_pred HhcCCHHHHHHHHhccCC--------------CCHhHHHHHHHHHHhcCChHHHHHHHH------HHHHCCCCC---CHH
Q 007871 353 MKCGSLDEARRIFYSMTK--------------KNVISYNVMIAGLGMNGFGEEALKCFA------QMETEGIPK---DDL 409 (586)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~------~m~~~g~~p---~~~ 409 (586)
.....++.|.+++..... .++.--.+....+...|+.++|..+.- -+.+-+.+. +..
T Consensus 669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere 748 (1081)
T KOG1538|consen 669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAERE 748 (1081)
T ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhh
Confidence 444455555555443321 011001122333445555555554321 111111111 223
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (586)
+...+...+.+...+..|-++|..+-. ...++......+++++|..+-++.+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCc
Confidence 444444444455555556666655533 2235555666667777766666653
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.029 Score=50.39 Aligned_cols=120 Identities=15% Similarity=0.103 Sum_probs=80.4
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCChH
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGT---LLLACRNHQNVT 493 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~ 493 (586)
.....|++.+|...|..... -.+-+...-..++.+|...|+.+.|..++..++..-...-+.. -+..+.+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34567888888888888777 3344556667788888888888888888888864433333333 223333333333
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 494 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...+ +.-...+|+|...-..++..|...|+.++|.+.+=.+.++
T Consensus 221 ~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33322 3334567888888888888899999999888877666554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.025 Score=48.51 Aligned_cols=96 Identities=16% Similarity=0.254 Sum_probs=70.7
Q ss_pred HHHhcc--CCCCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc--------------
Q 007871 363 RIFYSM--TKKNVISYNVMIAGLGM-----NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS-------------- 421 (586)
Q Consensus 363 ~~~~~~--~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-------------- 421 (586)
..|+.. ...+-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 34566677777777654 466677777888899999999999999999887542
Q ss_pred --CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC
Q 007871 422 --GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459 (586)
Q Consensus 422 --g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (586)
.+-+-|++++++|.. +|+-||.+++..+++++++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 134567888888888 5888888888888888876664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.047 Score=43.69 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=62.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcch---HHHHHHHHH
Q 007871 450 LVDLLSRAGELEQALNIVESMP----MKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL---YVLLSNIYA 521 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~ 521 (586)
-+....+.|++++|.+.|+.+. ..| ....-..++.++.+.+++++|...+++.++++|.++.+ +...+-++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3455567888888888888772 222 34555677888999999999999999999999887754 444454555
Q ss_pred hcCC---------------chHHHHHHHHHHh
Q 007871 522 DAGM---------------WEHALRIRKMMRK 538 (586)
Q Consensus 522 ~~g~---------------~~~A~~~~~~m~~ 538 (586)
++.. ..+|...|+++++
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 5544 5566666666655
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=1.1 Score=47.10 Aligned_cols=95 Identities=14% Similarity=0.034 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhCCC-C-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 007871 225 DISSARILFEHMPI-K-DLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302 (586)
Q Consensus 225 ~~~~a~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 302 (586)
..++...++++-.. | ....-...+..+.+.+++....+.+..- ..+...-.....+....|+.++|....+.+-..|
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 34444444444431 2 2223333444555666777666633222 2344444555666666777666666666665544
Q ss_pred CCCCHHHHHHHHHHHhccC
Q 007871 303 VRPDVISVMGAISACAQVG 321 (586)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~ 321 (586)
...+..+..++..+.+.|
T Consensus 160 -~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 160 -KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred -CCCChHHHHHHHHHHHcC
Confidence 223344555555554444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.57 Score=43.96 Aligned_cols=280 Identities=14% Similarity=0.086 Sum_probs=129.1
Q ss_pred HHHHHHHHhc--CCCchhHHHHHHHhHhCCCCCCcccHHHHHHH--HhccCCchHHHHHHHHHHHhCCCCchh--HHHHH
Q 007871 80 HNTMIRGYTQ--SSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA--CGVLMGLVEGTEIHGEVVKMGFLCDVF--VVNGL 153 (586)
Q Consensus 80 ~~~ll~~~~~--~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l 153 (586)
|.+|-.++.. .|+-..|.++-.+-... +.-|......|+.+ -...|+++.|.+-|+.|... |... -+..|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 4444444432 34555555544443221 22233333333332 22346666666666666541 2211 12233
Q ss_pred HHHHHhcCChhHHHHHhccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC-----CCChh--HHHHHHHHH--hh
Q 007871 154 IGMYSKCGHMGCARSVFEGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP-----QKDAI--SWSIMIDGY--RK 221 (586)
Q Consensus 154 i~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~ll~~~--~~ 221 (586)
.--.-+.|+.+.|..+-++.-. .-.+.+...+...+..|+++.|+++++.-+ .++.. .-..++.+- ..
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 3333455666666555544322 134556666666666666666666666544 22221 111122111 01
Q ss_pred ccCCHHHHHHHHHhCC--CCChhH-HHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCchHHHHHHH
Q 007871 222 KKGDISSARILFEHMP--IKDLIS-WNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFR 296 (586)
Q Consensus 222 ~~g~~~~a~~~~~~~~--~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~ 296 (586)
-..+...|...-.+.. .||... -..-..++++.|++.++-.+++.+-+ |.+..+. +..+.+.|+. ++.-++
T Consensus 241 ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gdt--a~dRlk 316 (531)
T COG3898 241 LDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGDT--ALDRLK 316 (531)
T ss_pred hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCCc--HHHHHH
Confidence 1122333333322222 233222 22234566777777777777777654 3333332 2333455543 222222
Q ss_pred HHHHC-CCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHH-hcCCHHHHHHHHhccC
Q 007871 297 EMLCQ-GVRP-DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYM-KCGSLDEARRIFYSMT 369 (586)
Q Consensus 297 ~m~~~-g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~ 369 (586)
...+. .++| +......+..+....|++..|..--+..... .|....|..|.+.-. ..|+-.++...+.+..
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 22210 1223 3445555666666677776666555444333 455556666655443 3477777777776554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0093 Score=49.38 Aligned_cols=68 Identities=22% Similarity=0.169 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH-----hCCCccCC
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR-----KRKIKKET 545 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~ 545 (586)
....++..+...|+++.|+..++++...+|-+...+..++.+|...|+..+|.+.|+++. +.|+.|++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 445566778899999999999999999999999999999999999999999999998874 45777654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0034 Score=45.29 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-------P-MKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
+++.++.+|...|++++|++.+++. + ..|+ ..++..+...+...|++++|+.+++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444555555555555555555443 1 1121 34455566666666666666666666654
|
... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.015 Score=48.59 Aligned_cols=88 Identities=17% Similarity=0.096 Sum_probs=67.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 452 DLLSRAGELEQALNIVESM-PMKP------NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~-~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
.-+...|++++|..-|..+ ..-| ....|..-..++.+.+.++.|+.-..++++++|....+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4455677777777766654 1111 23455555667888999999999999999999998888888899999999
Q ss_pred CchHHHHHHHHHHhC
Q 007871 525 MWEHALRIRKMMRKR 539 (586)
Q Consensus 525 ~~~~A~~~~~~m~~~ 539 (586)
++++|++-|+++.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999988764
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.012 Score=54.84 Aligned_cols=128 Identities=12% Similarity=-0.005 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHH----HcCC-CCch
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREML----CQGVR-PDVISVMGAISACAQVGALDLGKWIHVFMK----RSRI-TMDM 342 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~----~~g~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~ 342 (586)
..|..|...|.-.|+++.|+...+.-+ +-|-. .....+..+.+++.-.|+++.|.+.|+... +.|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 445556666666777777776554322 11211 122456667777777788888777766542 3331 2234
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC---------CCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 343 IVQTALIDMYMKCGSLDEARRIFYSMTK---------KNVISYNVMIAGLGMNGFGEEALKCFAQME 400 (586)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 400 (586)
....+|...|.-..++++|+..+.+-.. -...++-+|..+|...|..++|+.+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4556677777777778888777764431 234567777778888888888877666544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.44 E-value=1.1 Score=44.64 Aligned_cols=181 Identities=15% Similarity=0.075 Sum_probs=117.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMTKK---NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 418 (586)
..+|...+..-...|+.+.+.-+|+...-| -...|-..+.-....|+.+-|..++....+--++-.+.+-..-..-+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 446666777777788888888888877643 23445555555555588888888777666543333332222222234
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHH----HHHHHHHH-HHhc
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL---NIVESM-PMKPNLA----LWGTLLLA-CRNH 489 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~----~~~~l~~~-~~~~ 489 (586)
-..|+++.|..+++.+..+ .+--...-..-+....+.|+.+.+. +++... ..+-+.. .+...... +.-.
T Consensus 377 e~~~n~~~A~~~lq~i~~e--~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESE--YPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HhhccHHHHHHHHHHHHhh--CCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 4578999999999999884 4223333334455667888888887 444443 1122222 22222222 4557
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
++.+.|..++.++.+..|++...|..++.....++
T Consensus 455 ~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999988877665
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.046 Score=48.72 Aligned_cols=93 Identities=18% Similarity=0.144 Sum_probs=56.7
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcC
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPK---LEHYSCLVDLLSRAGELEQALNIVESM----PMKP-NLALWGTLLLACRNHQ 490 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~ 490 (586)
.+.|++..|...|...++ +++-+ ...+-.|+.++...|++++|..+|..+ +..| -+..+.-+..+..+.|
T Consensus 152 ~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~ 229 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLG 229 (262)
T ss_pred HHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhc
Confidence 345566777777666666 33332 334555666777777777776666554 2223 3455556666666777
Q ss_pred ChHHHHHHHHHHHhcCCCCcchH
Q 007871 491 NVTLAEVVVEGLVELKADDCGLY 513 (586)
Q Consensus 491 ~~~~a~~~~~~~~~~~p~~~~~~ 513 (586)
+.++|...|+++.+..|..+.+-
T Consensus 230 ~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 230 NTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred CHHHHHHHHHHHHHHCCCCHHHH
Confidence 77777777777777777665443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.63 Score=40.91 Aligned_cols=177 Identities=13% Similarity=0.020 Sum_probs=78.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc
Q 007871 278 MIDGYAQHGNPKEALYLFREMLCQGV--RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC 355 (586)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 355 (586)
....+...|++.+|...|+++..... +-.......++.++.+.|+++.|...++..++.-......-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34455566777777777777665421 1112233445556666667777766666665553222211122122221111
Q ss_pred CCHHHHHHHHhccCCCC-------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007871 356 GSLDEARRIFYSMTKKN-------VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 356 g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 428 (586)
....... ....| ...+..++.-|=......+|...+..+... . ...-..+..-|.+.|.+..|.
T Consensus 91 ~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHH
T ss_pred HhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHH
Confidence 1111100 00111 112334444444444555555444443321 0 011122445567777777777
Q ss_pred HHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHH
Q 007871 429 RIFQSMKRHCGIEP-KLEHYSCLVDLLSRAGELEQA 463 (586)
Q Consensus 429 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 463 (586)
.-++.+.+++.-.+ .......++.+|.+.|..+.|
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 77777777421111 123445566777777776644
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.066 Score=49.31 Aligned_cols=162 Identities=15% Similarity=0.057 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCH---HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCC----CChHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMET-EGIPKDD---LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE----PKLEH 446 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 446 (586)
.|..+..++-+.-++.+++.+-+.-.. .|..|.. .....+..++...+.++++++.|+...+-..-. ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444555555555555565555443332 2233311 234445666677777888888888776521111 12456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhcC------CC
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-------PMKPNL-----ALWGTLLLACRNHQNVTLAEVVVEGLVELK------AD 508 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~ 508 (586)
+-.|...|.+..++++|..+..+. ..+.-. .....+.-++...|....|.+..+++.++. |.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777888888888888776665443 222212 222334456778888888888888877742 33
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 509 DCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 509 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
.......++++|...|+.+.|..-|+..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 4455667888888888888887777664
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.3 Score=49.16 Aligned_cols=117 Identities=13% Similarity=-0.003 Sum_probs=77.0
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCChHH
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM-K-----PNLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~~~~~~ 494 (586)
..+.+.|.+++..+.+ .+|.+....-.-++.+...|++++|++.|++... + ....++-.++..+.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4566778888888777 3333333333345667777888888888876521 1 133445566667777888888
Q ss_pred HHHHHHHHHhcCCCCcchHHH-HHHHHHhcCCc-------hHHHHHHHHHHhC
Q 007871 495 AEVVVEGLVELKADDCGLYVL-LSNIYADAGMW-------EHALRIRKMMRKR 539 (586)
Q Consensus 495 a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~-------~~A~~~~~~m~~~ 539 (586)
|...+.++.+.+.-+..+|.- .+-++...|+. ++|.+++.+....
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 888888888876555544444 45557777887 7788887776543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.5 Score=43.86 Aligned_cols=120 Identities=13% Similarity=-0.007 Sum_probs=66.0
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHH-
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP--MKPNLALWGTLLLA- 485 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~- 485 (586)
.+|...+.--...|+.+...-.|+++.- .+..-...|-..++-....|+.+-|..++.... ..|+......+-..
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4555555555666777777766666644 223334445555555555566666666655441 11222222222222
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 530 (586)
+...|+++.|..+++.+.+.-|.....-..-+....+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 344567777777777776655665555555555666666666666
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.7 Score=44.55 Aligned_cols=335 Identities=14% Similarity=0.106 Sum_probs=158.4
Q ss_pred HhCCCCCCcccHHH-----HHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---ChhHHHHHhccCCC
Q 007871 104 KRKGLLVDNYTYPF-----VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG---HMGCARSVFEGSEI 175 (586)
Q Consensus 104 ~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~ 175 (586)
..-|++.+..-|.. +|.-+...+.+..|.++-..+...-... ..+|.....-+.+.. +-+.+..+-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34567766666654 4555666778888888877765422222 566777776666653 23334444444444
Q ss_pred --CChhhHHHHHHHHHhCCChhHHHHHHhhCCCC--------ChhHHHHHHHHHhhccCCHHHHHHHHHhCCCC-ChhHH
Q 007871 176 --KDLVSWNLVLRGFVECGEMGKAREVFDEMPQK--------DAISWSIMIDGYRKKKGDISSARILFEHMPIK-DLISW 244 (586)
Q Consensus 176 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-~~~~~ 244 (586)
....+|..+.+.....|+++-|..+++.=... +...+...+.-+ ...|+.+....++-.+... +...+
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ka-ies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKA-IESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHH
Confidence 35567888888888888888888887653311 111112222222 3333333333332222110 00000
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhCCCchHHHHHHH--HHH----HCCCCCCHHHHHHHHHHH
Q 007871 245 NSMIDGYAKIGDLVAAQQLFNEMPE-RNVFSWSIMIDGYAQHGNPKEALYLFR--EML----CQGVRPDVISVMGAISAC 317 (586)
Q Consensus 245 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~--~m~----~~g~~~~~~~~~~l~~~~ 317 (586)
+.-..+...|..+|.+..+ .|..+ +-..|- .++-..++..|. ... ..|..|+ ......++
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~ 648 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRHQDRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAF 648 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHhhchhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHH
Confidence 0111122223333333222 11100 011111 122112221111 100 0122222 22233344
Q ss_pred hccCChhH---H-------HHHHHHHH-HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhc
Q 007871 318 AQVGALDL---G-------KWIHVFMK-RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN 386 (586)
Q Consensus 318 ~~~~~~~~---a-------~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 386 (586)
++.....- + ..+.+.+. +.|.....-+.+--+.-+...|+..+|.++-.+..-||-..|-.-+.+++..
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhh
Confidence 43332111 1 11111111 1122222223333344445567777777777777767777777777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 007871 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNI 466 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 466 (586)
+++++-+++-+.+. .+.-|.-+..+|.+.|+.++|.+++-++.. . . ..+.+|.+.|++.+|.+.
T Consensus 729 ~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---l---~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 729 KKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---L---Q----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---h---H----HHHHHHHHhccHHHHHHH
Confidence 77766655544322 134456667777777777777776655422 1 1 456667777777776665
Q ss_pred HHh
Q 007871 467 VES 469 (586)
Q Consensus 467 ~~~ 469 (586)
--+
T Consensus 793 A~~ 795 (829)
T KOG2280|consen 793 AAE 795 (829)
T ss_pred HHH
Confidence 433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.55 Score=42.56 Aligned_cols=172 Identities=12% Similarity=0.017 Sum_probs=112.5
Q ss_pred HHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhh
Q 007871 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC 438 (586)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 438 (586)
+...++++++..+....-..-.......|++.+|..+|+..... .+-+......+..+|...|+.+.|..++..+-.+
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~-~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~- 197 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQA-APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ- 197 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHh-CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-
Confidence 34555555555442222223334566788889999988888774 2333466777888889999999999998876542
Q ss_pred CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCcchHH
Q 007871 439 GIEPK-LEHYSCLVDLLSRAGELEQALNIVESMPMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELK--ADDCGLYV 514 (586)
Q Consensus 439 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~ 514 (586)
...+ ......-+..+.+.....+...+-.+....| |...-..+...+...|+.+.|.+.+-.+++.+ -.+.....
T Consensus 198 -~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk 276 (304)
T COG3118 198 -AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARK 276 (304)
T ss_pred -chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHH
Confidence 1111 1122233455555555555555555554455 66777777888889999999998888887764 66788888
Q ss_pred HHHHHHHhcCCchHHHHHH
Q 007871 515 LLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 515 ~l~~~~~~~g~~~~A~~~~ 533 (586)
.++.++.-.|.-+.+...+
T Consensus 277 ~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 277 TLLELFEAFGPADPLVLAY 295 (304)
T ss_pred HHHHHHHhcCCCCHHHHHH
Confidence 8888888888665544433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.13 Score=42.36 Aligned_cols=92 Identities=9% Similarity=-0.053 Sum_probs=54.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (586)
..-+...|++++|..+|+-+...+ .-+..-+..|..+|-..+++++|...|..... .. ..|+..+-..+.+|...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCC
Confidence 334456677777777777665532 22334455555566667777777777776655 12 3344445556677777777
Q ss_pred HHHHHHHHHhCCCCC
Q 007871 460 LEQALNIVESMPMKP 474 (586)
Q Consensus 460 ~~~A~~~~~~~~~~p 474 (586)
.+.|...|+....+|
T Consensus 121 ~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 121 AAKARQCFELVNERT 135 (165)
T ss_pred HHHHHHHHHHHHhCc
Confidence 777777776654333
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.2 Score=42.16 Aligned_cols=109 Identities=11% Similarity=0.111 Sum_probs=83.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 489 (586)
+.+.-+.-|...|+...|.++..+ +.+ |+...|...+++|+..|+|++-.++... +-.+.-|..++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 455556667778888877766544 344 7888899999999999999998877654 23457788899999999
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 007871 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 535 (586)
|+..+|..+..++ .+..-+..|.+.|+|.+|.+.--+
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999988872 125677889999999999776433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.15 E-value=2 Score=44.38 Aligned_cols=74 Identities=18% Similarity=0.267 Sum_probs=45.6
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQ 490 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 490 (586)
....+..|.+.|-+++-.-++.+|-. +..+|.-.--+.++.++|+++.++ ..|...|..|+..+...-
T Consensus 637 lekA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 637 LEKALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKP 704 (846)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCc
Confidence 34445556666666666666655522 233444444466677777777665 358889999998877766
Q ss_pred ChHHHH
Q 007871 491 NVTLAE 496 (586)
Q Consensus 491 ~~~~a~ 496 (586)
.+-.++
T Consensus 705 e~~~~l 710 (846)
T KOG2066|consen 705 EFIKAL 710 (846)
T ss_pred HHHHHH
Confidence 655554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.051 Score=48.47 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=74.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---cchHHHHH
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM----PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD---CGLYVLLS 517 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 517 (586)
.|+.-+. +.+.|++.+|...|... +.. -.+..+..|..++...|++++|...|..+.+..|.+ |..+..|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5665555 44778899999998776 211 133445558899999999999999999999977665 56788899
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007871 518 NIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.12 E-value=2.7 Score=45.66 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=28.5
Q ss_pred HHHHHHhCCChhHHHHHHhhCC-------CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC
Q 007871 184 VLRGFVECGEMGKAREVFDEMP-------QKDAISWSIMIDGYRKKKGDISSARILFEHMP 237 (586)
Q Consensus 184 l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~ 237 (586)
-++-++..+++.+|+.+.++-+ +-+...|..-+.++....++.+.-..++-.+.
T Consensus 683 ~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk 743 (1265)
T KOG1920|consen 683 KVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELK 743 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcc
Confidence 3455666667777776666554 22333333334444345555555555555554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.047 Score=52.63 Aligned_cols=63 Identities=17% Similarity=0.080 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNL----ALWGTLLLACRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 505 (586)
+...++.++.+|...|++++|+..|++. ...|+. ..|..+..+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445555555555555555555555553 334432 23555555555556666666666655554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.083 Score=43.66 Aligned_cols=72 Identities=25% Similarity=0.316 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH----hhCCCCChHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR----HCGIEPKLEHY 447 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~ 447 (586)
....++..+...|++++|..+++++... -+-+...+..++.+|...|+...|.++|+.+.+ +.|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3444556666777777777777777763 233456777777777777777777777776543 35777776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.13 Score=40.82 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 404 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..|+..+...++.+|+..|++..|.++++...+.++++.+...|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55666666777777766677777777777766666666666666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.2 Score=42.59 Aligned_cols=75 Identities=15% Similarity=0.040 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHh---CCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007871 243 SWNSMIDGYAKIGDLVAAQQLFNEMPER-------NVFSWSIMIDGYAQ---HGNPKEALYLFREMLCQGVRPDVISVMG 312 (586)
Q Consensus 243 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 312 (586)
+...++-.|-...+++...++++.+... ....-....-++-+ .|+.++|+.++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3334445566667777777777776652 11222223344445 6778888888877665555677777776
Q ss_pred HHHHH
Q 007871 313 AISAC 317 (586)
Q Consensus 313 l~~~~ 317 (586)
+...|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.36 Score=44.19 Aligned_cols=161 Identities=12% Similarity=0.002 Sum_probs=113.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHH----HHHHHHhhcCC
Q 007871 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS----CLVDLLSRAGE 459 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~ 459 (586)
--.|+..+|-..|+++.+. .+.|...+...=.+|...|+...-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 4467888888888888874 566767777777888889998888888888877 3455554443 34455668899
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCCchHHHHHH
Q 007871 460 LEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD----DCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 460 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
+++|++.-++. .+.| |.-.-.+....+.-.|+..++.++..+-...=.. -..-|-..+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999988887 3333 4555566666678888999998887765442111 1223555666788889999999999
Q ss_pred HHHHhCCCccCCCe
Q 007871 534 KMMRKRKIKKETGR 547 (586)
Q Consensus 534 ~~m~~~~~~~~~~~ 547 (586)
++=.-...+.+.+.
T Consensus 271 D~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 271 DREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHhhccchh
Confidence 88655555555553
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.23 Score=48.14 Aligned_cols=143 Identities=8% Similarity=0.067 Sum_probs=87.0
Q ss_pred ChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHhhc---------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh
Q 007871 388 FGEEALKCFAQMET-EGIPKDD-LIFLGVLIACSH---------SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456 (586)
Q Consensus 388 ~~~~A~~~~~~m~~-~g~~p~~-~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (586)
..+.|+.+|.+... ....|+. ..|..+..++.. ..+..+|.++-++..+ --+.|+.....++.++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 34667778888772 2256654 456555554422 1234455566555555 344566777777777777
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHH--HHHhcCCchHHHHH
Q 007871 457 AGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN--IYADAGMWEHALRI 532 (586)
Q Consensus 457 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~ 532 (586)
.|+++.|...|++. ...|| ...|......+.-.|+.++|.+.++++.+++|....+-..-.+ .|+.. ..++|+.+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 77788888888776 34454 4555555555667778888888888888887776544433333 34443 34556655
Q ss_pred H
Q 007871 533 R 533 (586)
Q Consensus 533 ~ 533 (586)
|
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 5
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.78 Score=37.47 Aligned_cols=126 Identities=9% Similarity=0.057 Sum_probs=72.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (586)
..++..+...+.+.....+++.+...| ..+....+.++..|++.+ .......+.. . .+.......++.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~-----~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--K-----SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--c-----cccCCHHHHHHHHHH
Confidence 345566666667777777777777665 355566777777776543 2333333331 1 122223346666777
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNH-QNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 457 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
.+.++++..++.+++. +...+..+... ++.+.|.+++.+ +.++..|..++..+..
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 7777777777777652 22233333333 677777777665 3356677776665543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.65 Score=45.17 Aligned_cols=140 Identities=12% Similarity=0.033 Sum_probs=86.2
Q ss_pred HHHHHHHHhccC---CCC---HhHHHHHHHHHHhc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 007871 358 LDEARRIFYSMT---KKN---VISYNVMIAGLGMN---------GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG 422 (586)
Q Consensus 358 ~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 422 (586)
.+.|..+|.+.. +-| ...|..+...+... ....+|.++-++..+.+ +-|+.....+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 567777887776 323 34555544443221 23345666777777743 446667777777777777
Q ss_pred CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh-CCCCCCHH---HHHHHHHHHHhcCChHHHHHH
Q 007871 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVES-MPMKPNLA---LWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 423 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~ 498 (586)
+++.|...|++... -.|....+|........-.|+.++|.+.+++ +...|... .....+..|+. ...+.|+++
T Consensus 353 ~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 353 QAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred chhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 88888888888866 2333456666666777778888888888887 45555432 22223334443 456666666
Q ss_pred HHH
Q 007871 499 VEG 501 (586)
Q Consensus 499 ~~~ 501 (586)
|-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.41 Score=38.44 Aligned_cols=117 Identities=20% Similarity=0.106 Sum_probs=60.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 007871 379 MIAGLGMNGFGEEALKCFAQMETEGIPK---DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455 (586)
Q Consensus 379 l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (586)
-.....+.|++++|.+.|+.+... .+- ....-..++.+|.+.|++++|...+++.++-+--.|+ .-|...+.++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~ 93 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLS 93 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHH
Confidence 344445666777777777666653 221 1234555666666667777777666666662112222 22333444433
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcch
Q 007871 456 RAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 512 (586)
.-...+..+.-+- ..+ ...+....|..-|+++++.-|++..+
T Consensus 94 ~~~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 94 YYEQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 3222221111111 111 11223557888888888888987754
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.9 Score=45.45 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=89.6
Q ss_pred CChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007871 192 GEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271 (586)
Q Consensus 192 g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 271 (586)
+++++|+..+..+. ...|.-.++.. .+.|-+..|..++..-.+.-...|.+..+.+.....+++|--.|+..-+-
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I-~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl- 968 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYI-KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL- 968 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHH-HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH-
Confidence 45555555555543 22223333333 55666666666665544444555666666666667777776666555431
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVIS--VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (586)
.-.+.+|...|+|++|+.+..++... -+... -..|..-+...++.-+|-++..+.... ....+
T Consensus 969 ----ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av 1033 (1265)
T KOG1920|consen 969 ----EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAV 1033 (1265)
T ss_pred ----HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHH
Confidence 12346677778888887777665421 12211 134556666777777777666655433 23345
Q ss_pred HHHHhcCCHHHHHHHHhccCC
Q 007871 350 DMYMKCGSLDEARRIFYSMTK 370 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~ 370 (586)
..|++...|++|..+-....+
T Consensus 1034 ~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1034 ALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHHhhHhHHHHHHHHHHhccc
Confidence 556666777777777655543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.7 Score=38.88 Aligned_cols=84 Identities=23% Similarity=0.228 Sum_probs=36.2
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 007871 454 LSRAGELEQALNIVESM-PMKP--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 530 (586)
+...++.+.+...+.+. ...+ ....+..+...+...++++.+...+.......|.....+..+...+...|.++++.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHH
Confidence 33444444444444433 1111 13333444444444444555555555555544443333444444444444444444
Q ss_pred HHHHHHH
Q 007871 531 RIRKMMR 537 (586)
Q Consensus 531 ~~~~~m~ 537 (586)
..+.+..
T Consensus 257 ~~~~~~~ 263 (291)
T COG0457 257 EALEKAL 263 (291)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.77 Score=45.55 Aligned_cols=152 Identities=13% Similarity=0.085 Sum_probs=75.1
Q ss_pred HHhcCChhHHHHHhc--cCCC-CChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHH
Q 007871 157 YSKCGHMGCARSVFE--GSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF 233 (586)
Q Consensus 157 ~~~~g~~~~a~~~~~--~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~ 233 (586)
..-.|+++.+.++.. ++.+ -...-.+.+++-+-+.|.++.|+.+... . ..-+... .+.|+++.|.++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLA-l~lg~L~~A~~~a 341 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELA-LQLGNLDIALEIA 341 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHH-HHCT-HHHHHHHC
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHH-HhcCCHHHHHHHH
Confidence 334566666433332 1111 0233466667777777777777776442 1 1122222 4566666666665
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007871 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313 (586)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 313 (586)
+... +...|..|.+...++|+++-|++.|.+..+ |..|+-.|...|+.+.-.++.+.....| -++..
T Consensus 342 ~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~a 408 (443)
T PF04053_consen 342 KELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIA 408 (443)
T ss_dssp CCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHH
T ss_pred HhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHH
Confidence 5543 455666677777777777777766666653 4444555556666665555555555444 13334
Q ss_pred HHHHhccCChhHHHHHH
Q 007871 314 ISACAQVGALDLGKWIH 330 (586)
Q Consensus 314 ~~~~~~~~~~~~a~~~~ 330 (586)
..++.-.|+.++...++
T Consensus 409 f~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 409 FQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHT-HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 44444445555444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.056 Score=31.18 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
.+..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 44555666666677777777777776666654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.1 Score=38.20 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=44.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGL---YVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+...|.+.|.+..|..-++.+++.-|+.... +..+..+|...|-.++|...-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 4455889999999999999999987766554 55567789999999999887765533
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=2.1 Score=38.20 Aligned_cols=198 Identities=16% Similarity=0.054 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHHc-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCH-hHHHHHHH-
Q 007871 307 VISVMGAISACAQVGALDLGKWIHVFMKRS-RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--KNV-ISYNVMIA- 381 (586)
Q Consensus 307 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~l~~- 381 (586)
...+......+...+....+...+...... ........+......+...+++..+.+.+..... ++. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 344455555555666666666555555432 2233344455555566666667777777766553 221 22222333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhh
Q 007871 382 GLGMNGFGEEALKCFAQMETEGIPK----DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP-KLEHYSCLVDLLSR 456 (586)
Q Consensus 382 ~~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 456 (586)
.+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... ..+. ....+..+...+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHH
Confidence 67888899999999988855 333 233444444456778899999999999887 3444 46778888889999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 457 AGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 457 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
.++++.|...+... ...|+ ...+......+...+.++.+...+.+.....|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999988877 33344 445555555555777899999999999998887
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.14 E-value=2.1 Score=40.00 Aligned_cols=53 Identities=19% Similarity=0.278 Sum_probs=25.2
Q ss_pred HhhccCCHHHHHHHHHHhHHh---hCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 007871 417 ACSHSGLATEGYRIFQSMKRH---CGIEP-KLEHYSCLVDLLSRAGELEQALNIVES 469 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 469 (586)
++...|....|.+.-++..+- .|..+ .......+.++|...|+.+.|+.-|++
T Consensus 215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 444455555555544444331 12222 223344455666666666665555543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.93 E-value=2.4 Score=37.28 Aligned_cols=25 Identities=4% Similarity=-0.061 Sum_probs=15.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHH
Q 007871 275 WSIMIDGYAQHGNPKEALYLFREML 299 (586)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~m~ 299 (586)
|..-..+|...+++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4444556666666777666666555
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.37 Score=37.51 Aligned_cols=90 Identities=17% Similarity=0.096 Sum_probs=45.5
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcC
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM----PMKPN--LALWGTLLLACRNHQ 490 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~l~~~~~~~~ 490 (586)
++...|+.+.|++.|.+... -.+.....||.-..++.-+|+.++|++-+++. +.+.. ...|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 44556666666666666555 33445555666666666666666665555544 11111 111222222245555
Q ss_pred ChHHHHHHHHHHHhcCCC
Q 007871 491 NVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 491 ~~~~a~~~~~~~~~~~p~ 508 (586)
+.+.|..-|+.+.+++..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 555665555555555533
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.059 Score=31.15 Aligned_cols=31 Identities=19% Similarity=0.009 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
.|..+...+...|++++|+..++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.3 Score=43.93 Aligned_cols=158 Identities=12% Similarity=0.107 Sum_probs=100.1
Q ss_pred HHHHHhCCChhHHHHHHh--hCC-CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH
Q 007871 185 LRGFVECGEMGKAREVFD--EMP-QKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQ 261 (586)
Q Consensus 185 ~~~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 261 (586)
.....-.|+++++..+.+ .+. .-.....+.++.-+ .+.|..+.|..+-.. + ..-.....+.|+++.|.
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL-~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFL-EKKGYPELALQFVTD-----P---DHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHH-HHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHH-HHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHH
Confidence 345566888888766665 222 11233355555555 888988888877543 2 23345567889999999
Q ss_pred HHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc
Q 007871 262 QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341 (586)
Q Consensus 262 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (586)
++.++.. +...|..|.....+.|+++-|...|.+.. -+..++-.|.-.|+.+...++.+.....|-
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--- 404 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD--- 404 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC---
Confidence 8877776 56689999999999999999999888743 245566667777888777777777766652
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSM 368 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 368 (586)
++....++.-.|+.++..+++.+.
T Consensus 405 ---~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ---INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 455555666678888777776544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.87 E-value=1 Score=45.31 Aligned_cols=116 Identities=16% Similarity=-0.024 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhhccCCHHHHHHHHHHhHHh-hCC-CCChHHHHHHHHHHhhcCCHHHH
Q 007871 387 GFGEEALKCFAQMETEGIPKDDLIFLGV-LIACSHSGLATEGYRIFQSMKRH-CGI-EPKLEHYSCLVDLLSRAGELEQA 463 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~~l~~~~~~~g~~~~A 463 (586)
.+.+.|.++++.+.. .-|+...|... .+.+...|+.++|.+.|+.+... ... +.....+-.++.++.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 345666666666666 34554433332 23345566677777776654320 011 11223344555666667777777
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHH-HHhcCCh-------HHHHHHHHHHHh
Q 007871 464 LNIVESMPM--KPNLALWGTLLLA-CRNHQNV-------TLAEVVVEGLVE 504 (586)
Q Consensus 464 ~~~~~~~~~--~p~~~~~~~l~~~-~~~~~~~-------~~a~~~~~~~~~ 504 (586)
.+.+..+.. +-+...|..+..+ +...|+. ++|.++++++..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777666621 1223333333333 3445555 666666665554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.83 E-value=3.9 Score=40.23 Aligned_cols=59 Identities=10% Similarity=0.156 Sum_probs=33.2
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
..+..++.+.|+.++|.+.++++.+......+..+...|+.++...+.+.++..++.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33444555666666666666666553221123345556666666666666666666655
|
The molecular function of this protein is uncertain. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.71 Score=42.40 Aligned_cols=156 Identities=9% Similarity=-0.033 Sum_probs=109.0
Q ss_pred hcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhhccCCHHH
Q 007871 354 KCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL----IFLGVLIACSHSGLATE 426 (586)
Q Consensus 354 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~g~~~~ 426 (586)
-.|+..+|-..++++.+ .|..++..--.+|...|+.+.-...+++.... ..|+.. .-..+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35677777777777764 46777887888899999999998888888764 344443 23334445678999999
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHH
Q 007871 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPN------LALWGTLLLACRNHQNVTLAEVVVE 500 (586)
Q Consensus 427 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~ 500 (586)
|++.-++..+ -.+.|.-...++...+.-.|++.++.++..+-...-+ ...|-...-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9998888766 2344666777788888899999999999887632211 1222233334567799999999998
Q ss_pred HHH--hcCCCCcch
Q 007871 501 GLV--ELKADDCGL 512 (586)
Q Consensus 501 ~~~--~~~p~~~~~ 512 (586)
+=+ +++.+|...
T Consensus 272 ~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 272 REIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHhhccchhh
Confidence 643 345666643
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.44 Score=37.82 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 007871 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLAC 486 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 486 (586)
|..++..++.++++.|+.+....+++.. .|+.++...- .+. +-..-+..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~---------~~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKK---------EGD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCccc---------cCc------cCCCCCCCCCHHHHHHHHHHH
Confidence 3456777777777777777777776544 2332221100 000 000112346666777777777
Q ss_pred HhcCChHHHHHHHHHHHhcC--CCCcchHHHHHH
Q 007871 487 RNHQNVTLAEVVVEGLVELK--ADDCGLYVLLSN 518 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~ 518 (586)
...|++..|.++++...+.. |.+..+|..|..
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77777777777777666654 333445555443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.4 Score=35.92 Aligned_cols=87 Identities=11% Similarity=0.141 Sum_probs=50.2
Q ss_pred CchhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcC
Q 007871 11 LKNPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQS 90 (586)
Q Consensus 11 ~~~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~ 90 (586)
....++..+...+.+......++.+++.+ ..++...+.++. .|++. +..+..+.+.. .++......+++.|.+.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~-ly~~~--~~~~ll~~l~~--~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIE-LYAKY--DPQKEIERLDN--KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHH-HHHHH--CHHHHHHHHHh--ccccCCHHHHHHHHHHc
Confidence 34455666666666777777777776665 356666667776 66655 44455555442 23334444556666666
Q ss_pred CCchhHHHHHHHh
Q 007871 91 SNPQKALSFYVNM 103 (586)
Q Consensus 91 ~~~~~A~~~~~~m 103 (586)
+-++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6566666555544
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.23 Score=38.63 Aligned_cols=89 Identities=17% Similarity=0.072 Sum_probs=60.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHHhhcC
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK--LEHYSCLVDLLSRAG 458 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 458 (586)
-+....|+.+.|++.|.+.+.. .+.+...|+.-..++.-+|+.++|+.=+++..+-.|-.-. ...|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3566778888888888887773 3445677888888888888888888888877763233211 123444455677778
Q ss_pred CHHHHHHHHHhC
Q 007871 459 ELEQALNIVESM 470 (586)
Q Consensus 459 ~~~~A~~~~~~~ 470 (586)
+.+.|..-|+..
T Consensus 130 ~dd~AR~DFe~A 141 (175)
T KOG4555|consen 130 NDDAARADFEAA 141 (175)
T ss_pred chHHHHHhHHHH
Confidence 888877777654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.49 E-value=7.4 Score=40.82 Aligned_cols=172 Identities=12% Similarity=0.006 Sum_probs=107.2
Q ss_pred hccCCCCChHHHHHHHhccCCCCcc---hHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchH
Q 007871 54 LTSPNTLNMDQAERLFNQIYQPNTY---MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVE 130 (586)
Q Consensus 54 ~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 130 (586)
++.+. .-++-|..+-+.-..+... ..-....-+.+.|++++|...|-+-... +.| ..++.-+.....+..
T Consensus 343 iL~kK-~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~Ikn 415 (933)
T KOG2114|consen 343 ILFKK-NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKN 415 (933)
T ss_pred HHHHh-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHH
Confidence 33344 4566666666544222111 2223345556889999999888766543 233 245666666667777
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhh--HHHHHHHHHhCCChhHHHHHHhhCCCCC
Q 007871 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVS--WNLVLRGFVECGEMGKAREVFDEMPQKD 208 (586)
Q Consensus 131 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 208 (586)
-..+++.+.+.|+.. ..--..|+.+|.+.++.+.-.+..+.... ..+. ....+..+.+.+-.++|..+-.+... .
T Consensus 416 Lt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-h 492 (933)
T KOG2114|consen 416 LTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATKFKK-H 492 (933)
T ss_pred HHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-C
Confidence 777888888888643 33445688999999999999888887762 2222 45566777777777777776665543 2
Q ss_pred hhHHHHHHHHHhhccCCHHHHHHHHHhCCCC
Q 007871 209 AISWSIMIDGYRKKKGDISSARILFEHMPIK 239 (586)
Q Consensus 209 ~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~ 239 (586)
......++ ...|++++|.+.++.+..+
T Consensus 493 e~vl~ill----e~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 493 EWVLDILL----EDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHHHH----HHhcCHHHHHHHHhcCCHH
Confidence 23333333 3447777777777776543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.9 Score=37.66 Aligned_cols=78 Identities=12% Similarity=0.083 Sum_probs=45.1
Q ss_pred HHHHHHhhc-CCHHHHHHHHHhCC-----CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 449 CLVDLLSRA-GELEQALNIVESMP-----MKPNL---ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 449 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
.+...|... .+++.|+..|+... ...+. .++.-+...-...+++.+|+.+|+++....-+|+..-..+-.-
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdy 197 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDY 197 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Confidence 344555444 56666666666551 11122 2222233334567889999999999888777776665555555
Q ss_pred HHhcCCc
Q 007871 520 YADAGMW 526 (586)
Q Consensus 520 ~~~~g~~ 526 (586)
+.+.|--
T Consensus 198 flkAgLC 204 (288)
T KOG1586|consen 198 FLKAGLC 204 (288)
T ss_pred HHHHHHH
Confidence 5555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.24 Score=45.02 Aligned_cols=57 Identities=23% Similarity=0.202 Sum_probs=32.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 481 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
.++..+...|+++.+...++++...+|-+...|..++.+|.+.|+...|+..|+.+.
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.11 Score=30.56 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 512 LYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
++..|+.+|.+.|+|++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788889999999999999998854
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.03 E-value=3.6 Score=35.53 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=83.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 007871 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451 (586)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 451 (586)
+..||-+.--+...|+++.|.+.|+...+ +.|.- .++..-.-++.-.|++.-|.+=+...-......|-...|.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 45677777677777888888888887776 34432 2332223344556777777766555544211112222222222
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcC
Q 007871 452 DLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD-------CGLYVLLSNIYADAG 524 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g 524 (586)
...-++.+|..-+.+--...|..-|...+-.+.- |.. ..+.+++++.+-..++ ..+|.-|+.-+...|
T Consensus 177 ---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKI-SEETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 2334566665544332223344445443333211 111 1123333333332332 235777888888888
Q ss_pred CchHHHHHHHHHHhCC
Q 007871 525 MWEHALRIRKMMRKRK 540 (586)
Q Consensus 525 ~~~~A~~~~~~m~~~~ 540 (586)
+.++|..+|+-....+
T Consensus 252 ~~~~A~~LfKLaiann 267 (297)
T COG4785 252 DLDEATALFKLAVANN 267 (297)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 8888888887765543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.00 E-value=2.6 Score=41.39 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=39.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 480 GTLLLACRNHQNVTLAEVVVEGLVELKAD--DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
..+..++.+.|+.++|++.++++.+..|. +..+...|+.+|...+++.++..++.+-.+...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 34555566667777777777777665544 345666677777777777777777766644333
|
The molecular function of this protein is uncertain. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.58 Score=41.86 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=61.3
Q ss_pred CChhHHHHHHHHHHh-----CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------------ChhHHHH
Q 007871 270 RNVFSWSIMIDGYAQ-----HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG----------------ALDLGKW 328 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~----------------~~~~a~~ 328 (586)
+|-.+|-..+..+.. .+..+-....++.|.+-|+.-|..+|..+++.+-+.. +-+-+..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 444555555554432 3455556666777777777778888887777665442 3456778
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 007871 329 IHVFMKRSRITMDMIVQTALIDMYMKCGS 357 (586)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 357 (586)
++++|...|+.||-.+-..|++++++.+-
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 88999999999999888888888877664
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.96 E-value=1.7 Score=36.34 Aligned_cols=115 Identities=6% Similarity=0.060 Sum_probs=66.0
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--ChhHHHHHhccCC
Q 007871 97 LSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCG--HMGCARSVFEGSE 174 (586)
Q Consensus 97 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~ 174 (586)
.++++.+.+.+++|+...|..+++.+.+.|.+... .+++..++-+|.......+-.+.... -..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45566666777888888888888888887765543 44455565555554443332222211 1233444444443
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHH
Q 007871 175 IKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGY 219 (586)
Q Consensus 175 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~ 219 (586)
..+..++..+...|++-+|+.+.+.....+......++.+.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA 130 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAA 130 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHH
Confidence 23556667777788888888877765433333344455544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.95 E-value=6.5 Score=38.10 Aligned_cols=150 Identities=9% Similarity=-0.065 Sum_probs=81.2
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC--hH
Q 007871 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK---DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK--LE 445 (586)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 445 (586)
....+|..++..+.+.|.++.|...+.++...+..+ .+.....-+..+...|+..+|...++..... ....+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 344567777778888888888888888777643211 2334444455566778888888887777661 11111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 446 HYSCLVDLLSRAGELEQALNI-VESMPMKPNLALWGTLLLACRNH------QNVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
....+...+.. ..+..... ........-...+..+...+... ++.+.+...|.++.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 00000000 00000000112233333333333 78899999999999999998888888887
Q ss_pred HHHhc
Q 007871 519 IYADA 523 (586)
Q Consensus 519 ~~~~~ 523 (586)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 76543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.83 E-value=4.4 Score=35.77 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=105.1
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--HhHHHHHHHHHHhc
Q 007871 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN--VISYNVMIAGLGMN 386 (586)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~ 386 (586)
.|.....+|....++++|..-+....+. .+.+...|. ..+.++.|.-+.+++.+-+ +..|+.-...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445555677777788777766555432 111211111 1122344444444444321 22344556667777
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhC----CCCChHHHHHHHHHHhhcCCHHH
Q 007871 387 GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG----IEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
|.++.|-..+++.-+ ....-++++|+++|++...-.. ...-...+....+.|.+..++++
T Consensus 105 GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 777776666655432 1122344455555554433100 01112345555667777777777
Q ss_pred HHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCcchHHHHHHHHHhcCCchHHH
Q 007871 463 ALNIVESMP-------MKPNL-ALWGTLLLACRNHQNVTLAEVVVEGLVEL----KADDCGLYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 463 A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~ 530 (586)
|-..+.+-. .-|+. ..+...+..+.-..|+..|+..++.-.+. .|.+......|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 766665431 11222 33455555566677888888888876653 356666777776554 556766665
Q ss_pred HH
Q 007871 531 RI 532 (586)
Q Consensus 531 ~~ 532 (586)
.+
T Consensus 248 kv 249 (308)
T KOG1585|consen 248 KV 249 (308)
T ss_pred HH
Confidence 44
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.8 Score=34.73 Aligned_cols=121 Identities=9% Similarity=0.006 Sum_probs=65.0
Q ss_pred HccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc--CCCCcchHHHH--H---HHHhcCCCc
Q 007871 21 ISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMHNTM--I---RGYTQSSNP 93 (586)
Q Consensus 21 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~l--l---~~~~~~~~~ 93 (586)
..+..++|..-|..+.+-|.-.-|.....-+..+.+.. |+...|...|+++ ..|-+....-+ + -.+..+|.+
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~k-gdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQK-GDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhc-ccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34667777777777777665555554433333245555 7777777777776 11211111111 1 123456666
Q ss_pred hhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 007871 94 QKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142 (586)
Q Consensus 94 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 142 (586)
++...-.+.+-..+.+.-...-..|--+-.+.|++..|.+.|.++....
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 6666666655444322222233444445556677777777777666543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.27 Score=45.08 Aligned_cols=96 Identities=13% Similarity=-0.037 Sum_probs=54.3
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCh
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP--MKPNLALWGTLLLACRNHQNV 492 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~ 492 (586)
.+-|.++|.+++|+.+|...+. -.+.++.++..-..+|.+..++..|+.-.+..- .+.-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 4456667777777777766655 233366666666666777666666655444331 111123344444444455666
Q ss_pred HHHHHHHHHHHhcCCCCcch
Q 007871 493 TLAEVVVEGLVELKADDCGL 512 (586)
Q Consensus 493 ~~a~~~~~~~~~~~p~~~~~ 512 (586)
.+|.+-++.++++.|.+...
T Consensus 182 ~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHhHHHHHhhCcccHHH
Confidence 66666666666677665433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.89 Score=40.73 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=72.2
Q ss_pred HHHHHhccC--CCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC-----------
Q 007871 361 ARRIFYSMT--KKNVISYNVMIAGLGMN-----GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG----------- 422 (586)
Q Consensus 361 a~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----------- 422 (586)
.+..|..+. +.|-.+|.+.+..+... +..+--...++.|.+-|+.-|..+|+.|++.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 46667777777766543 455556667788888888888889998888775432
Q ss_pred -----CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 007871 423 -----LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460 (586)
Q Consensus 423 -----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (586)
+-.-++.++++|.. +|+.||.++-..|+.++++.+-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 23457888999988 69999999999999999888753
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=7 Score=36.30 Aligned_cols=74 Identities=20% Similarity=0.160 Sum_probs=35.1
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 238 IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316 (586)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 316 (586)
.++..+....+.++.+.|+......+.+.+..+++ ....+.++...|+. +|+..+..+.+. .||...-...+.+
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 44555555555666666654333333333333332 23344555555553 455555555543 2344444444433
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.17 E-value=6.4 Score=38.13 Aligned_cols=69 Identities=16% Similarity=0.177 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELK----ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 474 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
....+|..+...+.+.|.++.|...+.++...+ +..+.+...-+..+...|+..+|...++........
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 356678888889999999999999999988865 225677888889999999999999999888774333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.22 Score=30.90 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMET 401 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~ 401 (586)
..+...|...|++++|.++|++.++
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.09 E-value=5.8 Score=41.55 Aligned_cols=176 Identities=9% Similarity=0.004 Sum_probs=90.8
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCCCch--hHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCC
Q 007871 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDM--IVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGF 388 (586)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 388 (586)
..-+..+.+..-++-|..+-+ ..+..++. .......+-+.+.|++++|...|-+...--.. ...+.-|....+
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHH
Confidence 334445555555555544432 22222221 12223333444667777777766554421111 113444555555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCC-CChHHHHHHHHHHhhcCCHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE-PKLEHYSCLVDLLSRAGELEQALNIV 467 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (586)
..+-..+++.+.+.|+... ..-..|+.+|.+.++.++-.++.+...+ |.. -| ....+..+.+.+-.++|.-+-
T Consensus 413 IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~~--g~~~fd---~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCDK--GEWFFD---VETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCCC--cceeee---HHHHHHHHHHhChHHHHHHHH
Confidence 5666667777777765433 3345567777777777776666655432 221 12 233455556666666666665
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007871 468 ESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGL 502 (586)
Q Consensus 468 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 502 (586)
.+... +...... .+...+++++|+++++.+
T Consensus 487 ~k~~~--he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK--HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc--CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 55532 2222222 245567788888777643
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=1.8 Score=41.97 Aligned_cols=129 Identities=10% Similarity=0.028 Sum_probs=77.1
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 007871 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP--MKPNLALWGTLLLACRNHQNVTLAEV 497 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~ 497 (586)
..|+.-.|-+-+....+ +.+-++.............|+++.+...+.... ......+...++......|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr--~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALR--NQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHH--hCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34555555444444433 233333333334445566677777777665552 22345566667777777777777777
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEE
Q 007871 498 VVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVI 550 (586)
Q Consensus 498 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 550 (586)
..+.++.....++.+....+-.--..|-++++.-.++++...+.+.+.|+...
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 77777776666666655555555566777777777777777666666665443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.23 Score=28.51 Aligned_cols=31 Identities=19% Similarity=0.058 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
+|..+...+...|++++|...|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3455555566666666666666666666653
|
... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.82 E-value=1.2 Score=36.56 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=48.8
Q ss_pred HHHHHHHHH---hhccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHHHHHHH
Q 007871 409 LIFLGVLIA---CSHSGLATEGYRIFQSMKRHCGIEPKL-EHYSCLVDLLSRAGELEQALNIVESMPMK-PNLALWGTLL 483 (586)
Q Consensus 409 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~ 483 (586)
.+++.|+.. -...++.+++..++..+.- +.|.. ..-..-+..+...|++.+|..+|+++... |....-..|+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALl 84 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALL 84 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHH
Confidence 344444443 3456777777777777755 33432 22222344556777777777777777433 3333334444
Q ss_pred HHHHhcCChHHHHHHHHHHHhcC
Q 007871 484 LACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 484 ~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
..|....+-..=..+.+++.+.+
T Consensus 85 A~CL~~~~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 85 ALCLYALGDPSWRRYADEVLESG 107 (160)
T ss_pred HHHHHHcCChHHHHHHHHHHhcC
Confidence 44444333333333334444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.78 E-value=8.3 Score=35.89 Aligned_cols=18 Identities=17% Similarity=-0.141 Sum_probs=13.5
Q ss_pred HHhcCChHHHHHHHHHHH
Q 007871 486 CRNHQNVTLAEVVVEGLV 503 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~ 503 (586)
+.+.++|+.|..+|+-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 557788888888887554
|
It is also involved in sporulation []. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.67 E-value=5.2 Score=33.27 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=79.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHH--HHHHhhcCC
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL--VDLLSRAGE 459 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~ 459 (586)
+.+.+..++|+.-|..+.+.|...=+. .-..........|+...|...|+++-++..+|.-..-...| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 356778889999999888877554332 22233345677889999999999887742222211122222 234567788
Q ss_pred HHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 460 LEQALNIVESMPMK--P-NLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 460 ~~~A~~~~~~~~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
+++...-++.+... | ....-..|..+-.+.|++.+|.++|..+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888888777322 2 233345666667788999999999988876
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.24 Score=29.07 Aligned_cols=27 Identities=15% Similarity=-0.017 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
++..|...|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356677777888888888888887554
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=1.3 Score=40.52 Aligned_cols=81 Identities=22% Similarity=0.112 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeE
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKE 558 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 558 (586)
.+.+-.+|.+.++++.|.++.+.+..+.|+++.-+..-+-+|.+.|.+..|..-++...+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~---------------- 247 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE---------------- 247 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----------------
Confidence 3455667899999999999999999999999999999999999999999999999998876543
Q ss_pred EecCCCCCCChhHHHHHHHHHHHH
Q 007871 559 FVSGEIFDVQSEELELVIQSFVKT 582 (586)
Q Consensus 559 ~~~~~~~~~~~~~~~~~l~~~~~~ 582 (586)
+|.+.-|..-|+.+..+
T Consensus 248 -------dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 248 -------DPISEMIRAQIHSIEQK 264 (269)
T ss_pred -------chhHHHHHHHHHHHhhc
Confidence 56666666666666543
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.38 E-value=4.5 Score=31.90 Aligned_cols=134 Identities=11% Similarity=0.098 Sum_probs=67.5
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhH---HHHHHHHHHhcCCH
Q 007871 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIV---QTALIDMYMKCGSL 358 (586)
Q Consensus 282 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~ 358 (586)
+.-.|..++..+++.+.... .+..-++.++.-....-+-+...+.++.+ |--.|... ...++.+|+..|..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcch
Confidence 34456777777777776653 23444555554443333333333333333 22222221 22344444444432
Q ss_pred HHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
. ......+..+...|+-|.-.+++..+.+. -.+++....-+..+|.+.|+..++.+++.++-+
T Consensus 86 s--------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 86 S--------------EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 2 22333456667777777777777777653 466777777777788888888887777777766
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.23 E-value=1.1 Score=36.83 Aligned_cols=83 Identities=14% Similarity=0.072 Sum_probs=60.6
Q ss_pred HHHHHHHHH---HhhcCCHHHHHHHHHhCC-CCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 445 EHYSCLVDL---LSRAGELEQALNIVESMP-MKPNLALWGTLL-LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 445 ~~~~~l~~~---~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
.+.+.|+.. -...++.+++..+++.+. .+|.......+- ..+...|+|.+|+.+++.+.+..|..+..--.++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 344455443 357789999999998883 456544443332 337889999999999999988888888888888888
Q ss_pred HHhcCCch
Q 007871 520 YADAGMWE 527 (586)
Q Consensus 520 ~~~~g~~~ 527 (586)
+...|+.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 88887754
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.12 E-value=2.3 Score=36.25 Aligned_cols=96 Identities=11% Similarity=0.004 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHH--H
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD--LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSC--L 450 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--l 450 (586)
.+..+...|.+.|+.++|.+.|.++.+....|.. ..+..++......|++..+...+.++..-.....|...-+. .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5666777888888888888888888775444444 35667777778888888888887777662111112222111 1
Q ss_pred --HHHHhhcCCHHHHHHHHHhC
Q 007871 451 --VDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 451 --~~~~~~~g~~~~A~~~~~~~ 470 (586)
+-.+...+++.+|.+.|-+.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 12234567888888777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.84 Score=36.79 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=53.3
Q ss_pred hhcCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 007871 455 SRAGELEQALNIVESMP-MKPN---LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~~-~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 527 (586)
...++++++..+++.+. .+|+ ..++... .+...|+|++|.++++.+.+..+..+..--.++.++...|+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 45788999999988882 3444 3444333 3778899999999999998888887877777888888888754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.27 Score=28.18 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 511 GLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.++..++.++...|++++|++.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=10 Score=35.18 Aligned_cols=60 Identities=13% Similarity=0.088 Sum_probs=24.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCc----hHHHHHHHHH
Q 007871 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNP----KEALYLFREM 298 (586)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~m 298 (586)
+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 34444444444444444332222222222334444444444444444442 2344444444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.89 E-value=19 Score=38.01 Aligned_cols=179 Identities=13% Similarity=0.108 Sum_probs=93.7
Q ss_pred chHHHHHHHHHHH-cCCCCChhh--HhHHHHHhccCCCCChHHHHHHHhcc----CCCCcc-----hHHHHHHHHhcCCC
Q 007871 25 TTHILQILAQLTT-NDLITEPFT--LSQLLMSLTSPNTLNMDQAERLFNQI----YQPNTY-----MHNTMIRGYTQSSN 92 (586)
Q Consensus 25 ~~~a~~~~~~~~~-~~~~~~~~~--~~~ll~~~~~~~~~~~~~A~~~~~~~----~~~~~~-----~~~~ll~~~~~~~~ 92 (586)
+..+.+.++.+.+ ..++|.... .-.+.. ++...+.+++.|+..+++. .+++.. +...+++.+.+.+.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~-iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLAS-ILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH
Confidence 3445677777774 333333322 233344 5553337899999988876 233322 23345566655554
Q ss_pred chhHHHHHHHhHhCCCC----CCcccHHHH-HHHHhccCCchHHHHHHHHHHHhC---CCCchhHHHHHHHHHH--hcCC
Q 007871 93 PQKALSFYVNMKRKGLL----VDNYTYPFV-LKACGVLMGLVEGTEIHGEVVKMG---FLCDVFVVNGLIGMYS--KCGH 162 (586)
Q Consensus 93 ~~~A~~~~~~m~~~~~~----~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~ 162 (586)
.. |...+++..+.--. +-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 44 88888876653211 112223333 222223378888888888776543 2334444444444433 4454
Q ss_pred hhHHHHHhccCC-------------CCChhhHHHHHHH--HHhCCChhHHHHHHhhCC
Q 007871 163 MGCARSVFEGSE-------------IKDLVSWNLVLRG--FVECGEMGKAREVFDEMP 205 (586)
Q Consensus 163 ~~~a~~~~~~~~-------------~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~ 205 (586)
.+.+.+.++++. .+...+|..++.. +...|+++.+...++.+.
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555554331 1123455555544 356677667666666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.87 E-value=8.4 Score=33.87 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHhHHhh-CCCCCh---HHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 422 GLATEGYRIFQSMKRHC-GIEPKL---EHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 422 g~~~~A~~~~~~~~~~~-~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
.+++.|+..|+..-.=+ |-..+. ..+......-...+++.+|+.+|++.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666654411 111122 22333334445678889999998887
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=91.42 E-value=2.3 Score=34.40 Aligned_cols=108 Identities=14% Similarity=0.157 Sum_probs=65.3
Q ss_pred HHHHHHHHHHh---hccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHH
Q 007871 408 DLIFLGVLIAC---SHSGLATEGYRIFQSMKRHCGIEPKL-EHYSCLVDLLSRAGELEQALNIVESMPMKP-NLALWGTL 482 (586)
Q Consensus 408 ~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l 482 (586)
....+.|+... ...++.+++..+++.+.- +.|+. ..-..-+..+...|++++|..+|++....+ ....-..|
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL 83 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKAL 83 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHH
Confidence 34555555543 458899999999999866 34432 232334556789999999999999996544 33333334
Q ss_pred HHHHHh-cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 483 LLACRN-HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 483 ~~~~~~-~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
+..|.. .||. .|...+......|.-.+++.+.+.+.
T Consensus 84 ~A~CL~al~Dp-------------------~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 84 LALCLNAKGDA-------------------EWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHhcCCh-------------------HHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 433433 2321 24444444445555566666666665
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.39 E-value=1.4 Score=37.57 Aligned_cols=92 Identities=14% Similarity=0.045 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCcchHHH--
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESMPMK---P--NLALWGTLLLACRNHQNVTLAEVVVEGLVELK--ADDCGLYVL-- 515 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~-- 515 (586)
..+..++.-|.+.|+.++|.+.+.++... + -...+..++......+++..+...+.++...- +.+....+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45556667777777777777777666321 1 23444556666666777777777777666542 222222211
Q ss_pred --HHHHHHhcCCchHHHHHHHHH
Q 007871 516 --LSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 516 --l~~~~~~~g~~~~A~~~~~~m 536 (586)
-+-.+...|+|.+|.+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 122355667787777766443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.36 Score=27.73 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 511 GLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+|..++.+|...|++++|+..+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 47889999999999999999999998764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.36 E-value=22 Score=37.62 Aligned_cols=462 Identities=9% Similarity=-0.100 Sum_probs=225.7
Q ss_pred hhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhc--CCCchhHHHHHHHhHhCCCCCCc-ccHHHHHH
Q 007871 44 PFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQ--SSNPQKALSFYVNMKRKGLLVDN-YTYPFVLK 120 (586)
Q Consensus 44 ~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~ 120 (586)
-..|..... ..+. |++..+.++...+..+....|-.-...... ...+++...++++-. --|-. ..-...+.
T Consensus 34 r~~f~~A~~--a~~~-g~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~---~~P~~~~Lr~~~l~ 107 (644)
T PRK11619 34 RQRYQQIKQ--AWDN-RQMDVVEQLMPTLKDYPLYPYLEYRQLTQDLMNQPAVQVTNFIRANP---TLPPARSLQSRFVN 107 (644)
T ss_pred HHHHHHHHH--HHHC-CCHHHHHHHHHhccCCCcHhHHHHHHHHhccccCCHHHHHHHHHHCC---CCchHHHHHHHHHH
Confidence 445555555 3344 678888777777743333333222222112 223343333333221 11222 22223344
Q ss_pred HHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhhHHHHHHHHHhCCChhHH
Q 007871 121 ACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE---IKDLVSWNLVLRGFVECGEMGKA 197 (586)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A 197 (586)
.+.+.+++......+. ..+.+.........+....|+.++|......+- ...+...+.++..+.+.|.....
T Consensus 108 ~La~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 108 ELARREDWRGLLAFSP-----EKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred HHHHccCHHHHHHhcC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHH
Confidence 4555555554444211 123344444556666677777665544444331 11345566666666666554433
Q ss_pred HHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHH-
Q 007871 198 REVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWS- 276 (586)
Q Consensus 198 ~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 276 (586)
.. +.- +... ...|+...|..+...+.+........++..+.. ...+...+.... ++...-.
T Consensus 183 d~------------w~R-~~~a-l~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~ 244 (644)
T PRK11619 183 AY------------LER-IRLA-MKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQM 244 (644)
T ss_pred HH------------HHH-HHHH-HHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHH
Confidence 21 111 1222 456777777777776633223333344444333 333333333321 2211111
Q ss_pred -HHHHHHHhCCCchHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007871 277 -IMIDGYAQHGNPKEALYLFREMLCQG-VRPDVI--SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352 (586)
Q Consensus 277 -~l~~~~~~~~~~~~A~~~~~~m~~~g-~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (586)
.+.-.-....+.+.|...+....... ..+... ....+.......+..+.+...+....... .+......-+...
T Consensus 245 ~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~A 322 (644)
T PRK11619 245 AAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMA 322 (644)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHH
Confidence 11111223456688888888775443 222222 22233322333322455555555433222 2444445555566
Q ss_pred HhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH-H
Q 007871 353 MKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEG-Y 428 (586)
Q Consensus 353 ~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A-~ 428 (586)
.+.++++.+...+..|.. ....-..=+..++...|+.++|...|+++.. .. +|..++.+ .+.|..-.- .
T Consensus 323 l~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~Lg~~~~~~~ 395 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QRLGEEYPLKI 395 (644)
T ss_pred HHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HHcCCCCCCCC
Confidence 688888888888888763 1222223355666668899999888888743 12 23333322 111211000 0
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--
Q 007871 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK-- 506 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 506 (586)
.....-.. .+..+ . -..-+..+...|+...|...+..+....+......+.....+.|.++.++.........+
T Consensus 396 ~~~~~~~~--~~~~~-~-~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~ 471 (644)
T PRK11619 396 DKAPKPDS--ALTQG-P-EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHL 471 (644)
T ss_pred CCCCchhh--hhccC-h-HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHH
Confidence 00000000 00000 1 112345566789999998888776434555666666666778888888887776544321
Q ss_pred -CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCe
Q 007871 507 -ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547 (586)
Q Consensus 507 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 547 (586)
-.-|..|...+..+.+.-..+.+.-+--.-.+.+..|...+
T Consensus 472 ~~rfp~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~S 513 (644)
T PRK11619 472 EERFPLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKARS 513 (644)
T ss_pred HHhCCcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcc
Confidence 12233466666666666667776654444457777776544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.85 E-value=13 Score=34.74 Aligned_cols=137 Identities=18% Similarity=0.270 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChhHHHHHHHHHHHcCCC---CchhHHHHHHHHHHhcCCH
Q 007871 288 PKEALYLFREMLCQGVRPDVISVMGAISACAQ--VG----ALDLGKWIHVFMKRSRIT---MDMIVQTALIDMYMKCGSL 358 (586)
Q Consensus 288 ~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 358 (586)
+++.+.+++.|.+.|+.-+..+|.+....... .. ...++..+|+.|++...- ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34666788888888888887776654443333 11 234566677777665321 112222222211 11111
Q ss_pred HHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCC--HHHHHHHHHHh
Q 007871 359 DEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL--IFLGVLIACSHSGL--ATEGYRIFQSM 434 (586)
Q Consensus 359 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~ 434 (586)
+. -.+.+..+|+.+...|+..+.. ....++..+..... ..++.++++.+
T Consensus 156 e~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EE---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HH---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 11 1245566777777766665442 23333332222222 34667777777
Q ss_pred HHhhCCCCChHHHHHHHHHH
Q 007871 435 KRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~ 454 (586)
.+. ++++....|..++-..
T Consensus 209 ~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 209 KKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHc-CCccccccccHHHHHH
Confidence 774 7777766666555433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=90.76 E-value=6 Score=36.98 Aligned_cols=142 Identities=15% Similarity=0.182 Sum_probs=87.0
Q ss_pred hhHHHHHHHccC-c----hHHHHHHHHHHHcCCCCChhhHhHHHHHhccC--CC---CChHHHHHHHhccC-------CC
Q 007871 13 NPLVSLLQISKT-T----THILQILAQLTTNDLITEPFTLSQLLMSLTSP--NT---LNMDQAERLFNQIY-------QP 75 (586)
Q Consensus 13 ~~l~~~l~~~~~-~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~---~~~~~A~~~~~~~~-------~~ 75 (586)
..++.++...+. + ++...+++.|.+.|...+.+++-+... +... .. ....+|..+|+.|. .+
T Consensus 61 ~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~-i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~ 139 (297)
T PF13170_consen 61 FILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALI-ILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSP 139 (297)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHH-HHHhcccccHHHHHHHHHHHHHHHHHhCccccCc
Confidence 345556666655 4 445888999999998888777765333 2322 10 13567888888882 24
Q ss_pred CcchHHHHHHHHhcCCCc----hhHHHHHHHhHhCCCCCCccc--HHHHHHHHhccCC--chHHHHHHHHHHHhCCCCch
Q 007871 76 NTYMHNTMIRGYTQSSNP----QKALSFYVNMKRKGLLVDNYT--YPFVLKACGVLMG--LVEGTEIHGEVVKMGFLCDV 147 (586)
Q Consensus 76 ~~~~~~~ll~~~~~~~~~----~~A~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~ 147 (586)
+-.++.+|+.. ..+++ +.+..+|+.+.+.|....... ...++..+..... ...+..+++.+.+.|+++..
T Consensus 140 ~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 140 EDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred cchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 44566666554 33333 456778888888787655542 2333333222222 34677888899999988877
Q ss_pred hHHHHHHHHH
Q 007871 148 FVVNGLIGMY 157 (586)
Q Consensus 148 ~~~~~li~~~ 157 (586)
..|..+.-..
T Consensus 218 ~~yp~lGlLa 227 (297)
T PF13170_consen 218 MHYPTLGLLA 227 (297)
T ss_pred ccccHHHHHH
Confidence 7776554433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=90.63 E-value=0.89 Score=41.86 Aligned_cols=92 Identities=13% Similarity=0.095 Sum_probs=61.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG 458 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 458 (586)
..-|.++|.+++|+.+|.+-.. +.| |+.++..-..+|.+...+..|..=...... -...-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia--Ld~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA--LDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH--hhHHHHHHHHHHHHHHHHHh
Confidence 5679999999999999998877 567 889999999999999988887766665554 11112233333333444445
Q ss_pred CHHHHHHHHHhC-CCCCC
Q 007871 459 ELEQALNIVESM-PMKPN 475 (586)
Q Consensus 459 ~~~~A~~~~~~~-~~~p~ 475 (586)
+..+|.+-++.. ...|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 555555555443 34555
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.38 Score=25.73 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=18.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 007871 511 GLYVLLSNIYADAGMWEHALRIRK 534 (586)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~ 534 (586)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678888888888888888775
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.33 E-value=48 Score=39.82 Aligned_cols=63 Identities=13% Similarity=-0.025 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
..+|...++....+|+++.|...+-......-+..+...+......|+...|+.++++.++.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 467778888888889999888876655433344555556666788899999999998888754
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.23 E-value=3.6 Score=37.67 Aligned_cols=78 Identities=17% Similarity=0.298 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH----hhCCCCChHHHHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR----HCGIEPKLEHYSCL 450 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~l 450 (586)
++..++..+...|+++.+...++++... -+-+...|..++.+|...|+...|+..|+.+.+ ..|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4445555555666666666666666553 122445566666666666666666666655544 24556665555444
Q ss_pred HHH
Q 007871 451 VDL 453 (586)
Q Consensus 451 ~~~ 453 (586)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.64 Score=26.28 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHH
Q 007871 514 VLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 514 ~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
..++.++.+.|++++|.+.++++.
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 334444444444444444444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.93 E-value=2.4 Score=31.56 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 391 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
+..+-++.+....+.|++......+.+|.+.+++..|.++++.++.+++... ..|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~--~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKK--EIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-T--THHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChH--HHHHHHHH
Confidence 4556666677777899999999999999999999999999999988655443 36766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.81 E-value=22 Score=35.24 Aligned_cols=170 Identities=10% Similarity=0.078 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTK--KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS 421 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 421 (586)
..-+++..+...-++.-+..+..+|.. .+-..|..+++.|... ..+.-..+|+++.+ ..-+......-+..+...
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~yEk 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHHHHH
Confidence 334444444444444444444444432 2333444455555544 33444455555544 222333333333333333
Q ss_pred CCHHHHHHHHHHhHHhhCCCCC------hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 007871 422 GLATEGYRIFQSMKRHCGIEPK------LEHYSCLVDLLSRAGELEQALNIVESM----PMKPNLALWGTLLLACRNHQN 491 (586)
Q Consensus 422 g~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~~~ 491 (586)
++-..+..+|.++..+ +-|. ...|..+.... ..+.+....+..++ +...-...+..+-.-|....+
T Consensus 145 ik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 145 IKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred hchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 4555555555554442 1111 11222222211 12333333333332 112223334444444555666
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+++|++++..+++.+..|..+...++.-+
T Consensus 221 ~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 221 WTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 66666666666665555555554444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=89.76 E-value=17 Score=33.82 Aligned_cols=61 Identities=21% Similarity=0.074 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 375 SYNVMIAGLGMNGFGE---EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
+...++.+|...+..+ +|..+++.+... ..-.+..+..-+..+.+.++.+.+.+.+.+|..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 3444555555555443 344444444332 111233444555555556667777777777766
|
It is also involved in sporulation []. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.76 E-value=12 Score=32.00 Aligned_cols=89 Identities=8% Similarity=-0.069 Sum_probs=57.9
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMPMKP-NLALWGTLLLACRNH 489 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~ 489 (586)
...+...|++++|..-++..... +.| ..+-..|.+.....|.+|+|+..++....+. .......-...+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHc
Confidence 34567778888888877776542 112 1222345667778888888888888764221 233334445557888
Q ss_pred CChHHHHHHHHHHHhcC
Q 007871 490 QNVTLAEVVVEGLVELK 506 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~~ 506 (586)
|+-++|...|+++.+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888888876
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.69 E-value=15 Score=33.03 Aligned_cols=252 Identities=17% Similarity=0.180 Sum_probs=137.0
Q ss_pred CCHHHHHHHHhhCCC--C-----ChhHHHHHHHHHHhCCCchHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHhccCC
Q 007871 255 GDLVAAQQLFNEMPE--R-----NVFSWSIMIDGYAQHGNPKEALYLFREMLC---QGV--RPDVISVMGAISACAQVGA 322 (586)
Q Consensus 255 g~~~~A~~~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~g~--~~~~~~~~~l~~~~~~~~~ 322 (586)
...++|+.-|.++.+ + .-.+.-.++....+.|++++....+.+|.. ..+ .-+....+.++.-.+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 456666666666543 1 223445567777777888777777777652 111 1234456677776666666
Q ss_pred hhHHHHHHHHHHHc-----CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--------C-------CHhHHHHHHHH
Q 007871 323 LDLGKWIHVFMKRS-----RITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--------K-------NVISYNVMIAG 382 (586)
Q Consensus 323 ~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~-------~~~~~~~l~~~ 382 (586)
.+....+|+.-.+. +-+.--.+-..|...|...|.+.+..++++++.. . -...|..-|+.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66666555443221 1111122334567777777788777777776641 1 12456667788
Q ss_pred HHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHh-----hccCCHHHHHHHHHHhHHhh---CCCCChH--HHHHHH
Q 007871 383 LGMNGFGEEALKCFAQMETE-GIPKDDLIFLGVLIAC-----SHSGLATEGYRIFQSMKRHC---GIEPKLE--HYSCLV 451 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~---~~~~~~~--~~~~l~ 451 (586)
|..+.+-.+-..+|++.... ..-|.+... .+++-| .+.|.+++|..-|=++-+.+ |.+.... -|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 88888888888888876652 234554443 344444 45678887765444443312 2222222 244455
Q ss_pred HHHhhcCCHHHHHHHHHh--C-C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchH
Q 007871 452 DLLSRAGELEQALNIVES--M-P--MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~--~-~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 513 (586)
..+.+.|- .-|+. + + ..|.......++.+|. .++..+-++++..-...--.+|.+.
T Consensus 280 NMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~~IM~DpFIR 340 (440)
T KOG1464|consen 280 NMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRSNIMDDPFIR 340 (440)
T ss_pred HHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhccccccHHHH
Confidence 55555541 11111 1 2 2344555667777774 4566665555554433333444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.64 E-value=0.41 Score=27.63 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=15.8
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHH
Q 007871 441 EPKLEHYSCLVDLLSRAGELEQAL 464 (586)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~A~ 464 (586)
|.+...|..++..|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445666667777777777766664
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.48 E-value=1.2 Score=36.48 Aligned_cols=129 Identities=16% Similarity=0.068 Sum_probs=73.8
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhH
Q 007871 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGK 196 (586)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 196 (586)
.++..+...+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34566666677777777777777666556677778888888888777777777774332 223445566666666666
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 007871 197 AREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGD 256 (586)
Q Consensus 197 A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 256 (586)
|..++.++...+.. +..+ ...++++.|.+..... +++..|..++..+...+.
T Consensus 89 a~~Ly~~~~~~~~a-----l~i~-~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDEA-----LEIL-HKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTTC-----SSTS-SSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHHH-----HHHH-HHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCc
Confidence 66666555411110 0001 2334444444333333 356677777776665543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.39 E-value=0.9 Score=27.43 Aligned_cols=26 Identities=23% Similarity=0.144 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
++.+...|...|++++|+.+++++.+
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 34444444444444444444444443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.33 E-value=34 Score=36.62 Aligned_cols=157 Identities=16% Similarity=0.115 Sum_probs=71.4
Q ss_pred HhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHH---HH--HHHH
Q 007871 384 GMNGFGEEALKCFAQMETE----GIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS---CL--VDLL 454 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~l--~~~~ 454 (586)
...|++++|+++.+..... -..+....+..+..+..-.|++++|..+.+...+. .-..+...+. .+ ...+
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il 547 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEIL 547 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHH
Confidence 3456677777766665542 11122233444455555567777777666655541 1122222222 11 2334
Q ss_pred hhcCCHH--HHHHHHHhC-----CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCCc---chHHHH
Q 007871 455 SRAGELE--QALNIVESM-----PMKP----NLALWGTLLLACRNHQNVTLAEVVVEGLVEL----KADDC---GLYVLL 516 (586)
Q Consensus 455 ~~~g~~~--~A~~~~~~~-----~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~---~~~~~l 516 (586)
..+|... +....+... +.+| -......++.++.+ ++.+..-.....+. .|... ..+..|
T Consensus 548 ~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~L 624 (894)
T COG2909 548 EAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSML 624 (894)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHH
Confidence 4555222 222222222 1112 12223333333322 33333333333332 12211 112356
Q ss_pred HHHHHhcCCchHHHHHHHHHHhCCCccC
Q 007871 517 SNIYADAGMWEHALRIRKMMRKRKIKKE 544 (586)
Q Consensus 517 ~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 544 (586)
+.++...|+.++|...++++......+.
T Consensus 625 A~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 625 AELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 7777777777777777777766555443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.06 E-value=2.7 Score=30.94 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
.=++.+-++.+....+.|++......+.+|.+.+++..|.++++.++.+++. +...|..++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3355666667777778999999999999999999999999999988864443 4446665554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.7 Score=28.15 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
...+..++.+.|++++|.+..+.+++.+|+|..+...
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3456667889999999999999999999999866544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.96 E-value=27 Score=36.32 Aligned_cols=153 Identities=13% Similarity=0.104 Sum_probs=72.9
Q ss_pred cCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHhhccC-----CHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 386 NGFGEEALKCFAQMET-------EGIPKDDLIFLGVLIACSHSG-----LATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+.+.|+.+|+.+.. .|.+ .....+..+|.+.. +.+.|..++..... .| .|+.... ++.+
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~---~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~--lg~~ 334 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLP---PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYL--LGVL 334 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCC---ccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHH--HHHH
Confidence 3455555555555444 3322 23344444444422 45566666666655 22 2333222 2222
Q ss_pred Hhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 007871 454 LSRA---GELEQALNIVESMPMKPNLALWGTLLLACR----NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMW 526 (586)
Q Consensus 454 ~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 526 (586)
|... .+...|.++|......-....+..+...|. -..+...|..++.++.+.++............+.. +++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccc
Confidence 2221 345667777766633333333333332221 23366777777777777663322222222222333 666
Q ss_pred hHHHHHHHHHHhCCCccCCC
Q 007871 527 EHALRIRKMMRKRKIKKETG 546 (586)
Q Consensus 527 ~~A~~~~~~m~~~~~~~~~~ 546 (586)
+.+.-.+..+...|......
T Consensus 414 ~~~~~~~~~~a~~g~~~~q~ 433 (552)
T KOG1550|consen 414 DTALALYLYLAELGYEVAQS 433 (552)
T ss_pred cHHHHHHHHHHHhhhhHHhh
Confidence 66666666666665544333
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.88 E-value=10 Score=38.30 Aligned_cols=149 Identities=18% Similarity=0.106 Sum_probs=89.0
Q ss_pred hcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007871 354 KCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433 (586)
Q Consensus 354 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (586)
-.|+++.|..++..+.+ ...+.++..+.++|-.++|+++ .+|+.-- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 45667777766655553 2334445555666666666543 3333211 1123456778877776554
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchH
Q 007871 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513 (586)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 513 (586)
. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+-+....+-....+.+..|...
T Consensus 663 ~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF- 728 (794)
T KOG0276|consen 663 A-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAF- 728 (794)
T ss_pred h-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchHH-
Confidence 4 234567788888888888888888887764 24555666666677665555555555555444322
Q ss_pred HHHHHHHHhcCCchHHHHHHHH
Q 007871 514 VLLSNIYADAGMWEHALRIRKM 535 (586)
Q Consensus 514 ~~l~~~~~~~g~~~~A~~~~~~ 535 (586)
.+|...|+++++.+++..
T Consensus 729 ----~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 729 ----LAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----HHHHHcCCHHHHHHHHHh
Confidence 346667777777776643
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.80 E-value=0.59 Score=26.44 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
+..+..++.+.|++++|...|+++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44566778889999999999998763
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.33 E-value=14 Score=30.97 Aligned_cols=136 Identities=10% Similarity=0.088 Sum_probs=74.8
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhH
Q 007871 132 TEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAIS 211 (586)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 211 (586)
.+..+.+.+.+++|+...+..++..+.+.|++.....+++--.-+|.......+-.+. +....+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~------------- 78 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAY------------- 78 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhH--ccChHHH-------------
Confidence 3455666677889999999999999999999888888776544443332222221111 1111111
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHH
Q 007871 212 WSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEA 291 (586)
Q Consensus 212 ~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 291 (586)
+-|..++.++. ..+..++..+...|++-+|.+.......-+......++.+-.+.+|...-
T Consensus 79 ---------------Ql~lDMLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf 139 (167)
T PF07035_consen 79 ---------------QLGLDMLKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLF 139 (167)
T ss_pred ---------------HHHHHHHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHH
Confidence 11112222211 12334455566667777777777665443333344556666666666655
Q ss_pred HHHHHHHHHC
Q 007871 292 LYLFREMLCQ 301 (586)
Q Consensus 292 ~~~~~~m~~~ 301 (586)
..+++-....
T Consensus 140 ~~V~~ff~~~ 149 (167)
T PF07035_consen 140 YAVFRFFEER 149 (167)
T ss_pred HHHHHHHHHh
Confidence 5555555443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.23 E-value=0.96 Score=27.29 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 511 GLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+++.++.+|...|++++|..++++....
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46889999999999999999999998653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.08 E-value=38 Score=35.63 Aligned_cols=122 Identities=13% Similarity=0.174 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC-CCChhHHHHHHHHHhhccCCHH
Q 007871 149 VVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDGYRKKKGDIS 227 (586)
Q Consensus 149 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~~g~~~ 227 (586)
+....|..+...|++++|-...-.|...+..-|...+..+...++......++=.-. .-+...|..++..+ .. .+..
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~-L~-~~~~ 471 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEF-LA-SDVK 471 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHH-HH-HHHH
Confidence 555666666777777777766666666666666666666666665554433322211 12334455554444 22 2222
Q ss_pred HHHHHHHhCC--------------C------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 007871 228 SARILFEHMP--------------I------KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNV 272 (586)
Q Consensus 228 ~a~~~~~~~~--------------~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 272 (586)
.-.++..... + .+......|+..|...++++.|..++-...++++
T Consensus 472 ~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 472 GFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 2222211111 0 1223344588888999999999998888877554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.2 Score=25.41 Aligned_cols=29 Identities=28% Similarity=0.333 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 511 GLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 511 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+|..++.+|...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46888999999999999999999998763
|
... |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=87.66 E-value=52 Score=36.74 Aligned_cols=94 Identities=11% Similarity=-0.056 Sum_probs=46.2
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHH-HHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 238 IKDLISWNSMIDGYAKIGDLVAAQ-QLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316 (586)
Q Consensus 238 ~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 316 (586)
.+|..+..+.+.++...|..+.+. .+...+.+++...-...+.++...+. +++...+..+.+ .|+...-...+.+
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~a 861 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLA 861 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHH
Confidence 455666666666666666544332 23333334554444445555555544 334444444443 3455555555555
Q ss_pred HhccCChhHHHHHHHHHHH
Q 007871 317 CAQVGALDLGKWIHVFMKR 335 (586)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~ 335 (586)
+.+......+...+..+.+
T Consensus 862 L~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 862 LTRWPGDPAARDALTTALT 880 (897)
T ss_pred HhccCCCHHHHHHHHHHHh
Confidence 5554323344444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.48 E-value=12 Score=32.09 Aligned_cols=99 Identities=12% Similarity=0.033 Sum_probs=52.6
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPK-----LEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQN 491 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~ 491 (586)
...|++++|..-|..... .+++. ...|..-.-++.+.+.++.|++-..+. ...|. ......-..+|.+...
T Consensus 106 F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 445555555555555555 22221 123333444555666666666655443 22231 1222222344666677
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
++.|+.-|+++.+.+|....+....+++
T Consensus 184 ~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 7777777777777777766555555444
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=87.06 E-value=6.5 Score=31.18 Aligned_cols=72 Identities=15% Similarity=0.139 Sum_probs=43.9
Q ss_pred CCChHHHHHHHHHHhhcCCHH---HHHHHHHhC-C-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcch
Q 007871 441 EPKLEHYSCLVDLLSRAGELE---QALNIVESM-P-MKP--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512 (586)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~-~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 512 (586)
.++..+--.+..++.+..+.+ +.+.++++. + ..| .......|.-++.+.++|+++.++.+.+++.+|+|..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 455555556666776665443 445556555 2 223 23444555566777778888888887777777776643
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.85 E-value=6.9 Score=35.96 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=71.9
Q ss_pred cCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-CCH-----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 007871 336 SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK-KNV-----ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL 409 (586)
Q Consensus 336 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 409 (586)
.|.+.+..+...++.......+++.+...+-++.. |+. .+-.+.++.+. .-++++++.++..=+.-|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 34455555666666666667788888888777663 211 11112223222 346779999998888899999999
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRH 437 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 437 (586)
+++.+++.+.+.+++.+|.++.-.|..+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999888887763
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.69 E-value=6 Score=36.33 Aligned_cols=102 Identities=23% Similarity=0.323 Sum_probs=66.2
Q ss_pred cCCCCChhhHhHHHHHhccCCCCChHHHHHHHhcc-CCCCcc-----hHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCC
Q 007871 38 NDLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI-YQPNTY-----MHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVD 111 (586)
Q Consensus 38 ~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~-~~~~~~-----~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~ 111 (586)
.|.+-+..+...++. ..... .+++++...+=.+ ..|+.. +-...++.+.+ -++++++.++..=+..|+-||
T Consensus 58 ~g~~~s~~~Vd~~V~-v~~~~-~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVD-VISSR-EEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred cCCCcceeehhhhhh-ccccc-cchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccc
Confidence 344555556666665 44444 6788887776665 222211 12233343333 356778888777778888888
Q ss_pred cccHHHHHHHHhccCCchHHHHHHHHHHHhC
Q 007871 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMG 142 (586)
Q Consensus 112 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 142 (586)
..+++.+|..+.+.+++.+|.++..+|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 8888888888888888888888877776643
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.63 E-value=29 Score=36.57 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=28.9
Q ss_pred HHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhcc
Q 007871 82 TMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVL 125 (586)
Q Consensus 82 ~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 125 (586)
.+|-.|.|.|++++|.++....... .......+...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 5666778888888888888655543 445556677777777664
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=86.46 E-value=1.1 Score=36.76 Aligned_cols=53 Identities=8% Similarity=0.082 Sum_probs=24.9
Q ss_pred HHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHH
Q 007871 84 IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG 136 (586)
Q Consensus 84 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 136 (586)
+..+.+.+.+.....+++.+...+...+....+.++..|++.+..+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444445555555555555544433344445555555555544444444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=86.05 E-value=2.7 Score=31.07 Aligned_cols=44 Identities=23% Similarity=0.267 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 497 VVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
..+++.++.+|+|......++..+...|++++|.+.+-.+.+..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 44555566677777777777777777777777777666665543
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=86.01 E-value=1.6 Score=26.95 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 514 VLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 514 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
..|+.+|...|+.+.|++++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468889999999999999999988644
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.94 E-value=16 Score=31.48 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=53.2
Q ss_pred hcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CCCcchHHHHHHHHHhcCCchHH
Q 007871 456 RAGELEQALNIVESMPMKP--NLALWGTLLLACRNHQNVTLAEVVVEGLVELK----ADDCGLYVLLSNIYADAGMWEHA 529 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A 529 (586)
+.|+ ++|.+.|-.+...| +.......+..|....|.++++.++-+++++. ..|+.++..|+.+|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3344 56777776664333 33333444445555779999999999999975 33789999999999999999988
Q ss_pred H
Q 007871 530 L 530 (586)
Q Consensus 530 ~ 530 (586)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 5
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.78 E-value=48 Score=34.50 Aligned_cols=246 Identities=11% Similarity=0.027 Sum_probs=110.5
Q ss_pred hCCCchHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC-----ChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007871 284 QHGNPKEALYLFREMLC-------QGVRPDVISVMGAISACAQVG-----ALDLGKWIHVFMKRSRITMDMIVQTALIDM 351 (586)
Q Consensus 284 ~~~~~~~A~~~~~~m~~-------~g~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (586)
...|++.|+.+|+.+.+ .|.++ ....+..+|.+.. +...|..++....+.|.+ +....-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 34455666666665554 33221 2333444444322 344566666666665522 22222111111
Q ss_pred HHh-cCCHHHHHHHHhccCCC-CHhHHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHH
Q 007871 352 YMK-CGSLDEARRIFYSMTKK-NVISYNVMIAGLG----MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425 (586)
Q Consensus 352 ~~~-~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 425 (586)
... ..+...|.++|....+. .+.++-.+...|. ...+...|..++++..+.| .|...--...+..+.. +.++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 111 13455666666655432 2222222222221 2235666777777776665 3322222222222333 5555
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHH---hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHH
Q 007871 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLL---SR----AGELEQALNIVESMPMKPNLALWGTLLLACRN----HQNVTL 494 (586)
Q Consensus 426 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~ 494 (586)
.+.-.+..+.. .+.......-..+.... .. ..+.+.+...+.+...+-+......+...|.. ..++..
T Consensus 415 ~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~ 493 (552)
T KOG1550|consen 415 TALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEK 493 (552)
T ss_pred HHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHH
Confidence 55555554444 23322111111111111 11 12344555555555433344444444444322 235777
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcC---CchHHHHHHHHHHhC
Q 007871 495 AEVVVEGLVELKADDCGLYVLLSNIYADAG---MWEHALRIRKMMRKR 539 (586)
Q Consensus 495 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~ 539 (586)
|...+..+.... +.....++..+...- ++..|.+++++....
T Consensus 494 a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 494 AAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 777777776665 556666666654331 156677777666543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.71 E-value=23 Score=30.84 Aligned_cols=63 Identities=8% Similarity=-0.191 Sum_probs=37.5
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHH
Q 007871 77 TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVK 140 (586)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 140 (586)
+..||-|.--+...|+++.|.+.|+...+.+..-+-...|.-|. +.-.|++..|.+-+...-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHh
Confidence 44677777777778888888888887777643322222222222 2245677777666555554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.41 E-value=6 Score=29.23 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=35.9
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
.+..-|++....+.+.+|.+.+|+..|.++++.+...-.++...|..+.
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3356688888888888999999999999998877755444444555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=85.25 E-value=41 Score=33.25 Aligned_cols=163 Identities=8% Similarity=-0.046 Sum_probs=71.1
Q ss_pred HHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 007871 84 IRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM 163 (586)
Q Consensus 84 l~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 163 (586)
|+++...| ..+++.+....... ++...+.....++....+......+.+.+. .++..+....++++...++.
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCch
Confidence 55666666 45666555555332 223333333333332222222333333332 24555666667777666666
Q ss_pred hHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhH
Q 007871 164 GCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243 (586)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~ 243 (586)
.....+..-+...++......+.++...+. +-...+...+..+|...-...+.++ ...+..+..-.+..-....|..+
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raL-G~l~~~~a~~~L~~al~d~~~~V 194 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRAL-GELPRRLSESTLRLYLRDSDPEV 194 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHH-HhhccccchHHHHHHHcCCCHHH
Confidence 655555555555555554444555444331 1111222222244444434444444 33333322222222223344444
Q ss_pred HHHHHHHHHhcCC
Q 007871 244 WNSMIDGYAKIGD 256 (586)
Q Consensus 244 ~~~l~~~~~~~g~ 256 (586)
-..-+.+....|.
T Consensus 195 R~aA~~al~~lG~ 207 (410)
T TIGR02270 195 RFAALEAGLLAGS 207 (410)
T ss_pred HHHHHHHHHHcCC
Confidence 4444444444444
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=85.10 E-value=39 Score=32.82 Aligned_cols=64 Identities=14% Similarity=0.080 Sum_probs=50.2
Q ss_pred CHHHHHHH---HHHHHhcCChHHHHHHHHHHHhcCCC-CcchHHHHHHHH-HhcCCchHHHHHHHHHHh
Q 007871 475 NLALWGTL---LLACRNHQNVTLAEVVVEGLVELKAD-DCGLYVLLSNIY-ADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 475 ~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~ 538 (586)
|...|.++ +..+.+.|-+..|.++.+-+..++|. ||..-...++.| .++++++--+++++....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44555544 44578899999999999999999998 888777777776 577888888888877655
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.01 E-value=21 Score=36.12 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=62.6
Q ss_pred HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 007871 252 AKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHV 331 (586)
Q Consensus 252 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 331 (586)
.+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|..... |..|+-.+...|+-+....+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 4456666666554433 3455677777777777777777777766543 3455556666666665555555
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 007871 332 FMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369 (586)
Q Consensus 332 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (586)
...+.|. . |....+|...|+++++.+++..-.
T Consensus 717 ~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 717 LAKKQGK-N-----NLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhcC
Confidence 5555552 1 233445666788888888876554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.89 E-value=4.3 Score=36.83 Aligned_cols=59 Identities=14% Similarity=-0.078 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
+......|...|.+.+|.++.+++...+|-+...+..++..|...|+--.|..-|+++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 44455668899999999999999999999999999999999999999888888888874
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.35 E-value=7.7 Score=29.01 Aligned_cols=49 Identities=20% Similarity=0.368 Sum_probs=34.9
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
.+..-|++......+.+|.+.+|+..|.++++.+...-.+....|..++
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 3356689999999999999999999999999988876655554666555
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.64 E-value=2.1 Score=23.35 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHH
Q 007871 513 YVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 513 ~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
+..++.++...|++++|...++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444444444444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.57 E-value=1.1e+02 Score=36.98 Aligned_cols=304 Identities=10% Similarity=0.017 Sum_probs=163.0
Q ss_pred hccCCHHHHHHHHHhCC----CC--ChhHHHHHHHHHHhcCCHHHHHHHHh-hCCCCChhHHHHHHHHHHhCCCchHHHH
Q 007871 221 KKKGDISSARILFEHMP----IK--DLISWNSMIDGYAKIGDLVAAQQLFN-EMPERNVFSWSIMIDGYAQHGNPKEALY 293 (586)
Q Consensus 221 ~~~g~~~~a~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 293 (586)
.+.+.+..|...++.-. +. ....+..+...|...++++...-+.. +..+|+.. .-+......|+++.|..
T Consensus 1394 frc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~---~qil~~e~~g~~~da~~ 1470 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLY---QQILEHEASGNWADAAA 1470 (2382)
T ss_pred HhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHH---HHHHHHHhhccHHHHHH
Confidence 56777778888777732 11 22345555557888888777776666 33344322 23344567889999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCH
Q 007871 294 LFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNV 373 (586)
Q Consensus 294 ~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 373 (586)
.|+.+.+.+ ++...+++.++......+.++...-..+......-+-....++.-+.+--+.++++...+.+. ..+.
T Consensus 1471 Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~ 1546 (2382)
T KOG0890|consen 1471 CYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNI 1546 (2382)
T ss_pred HHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccc
Confidence 999998764 444667777777777777777666554444333211111222223334456677777666655 3344
Q ss_pred hHHHHH--HHHHHhcCChH--HHHHHHHHHHHCCCCC--------C-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCC
Q 007871 374 ISYNVM--IAGLGMNGFGE--EALKCFAQMETEGIPK--------D-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440 (586)
Q Consensus 374 ~~~~~l--~~~~~~~~~~~--~A~~~~~~m~~~g~~p--------~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 440 (586)
..|... +....+..+-| .-...++.+.+.-+.| + ...|..++....-. ++-.......+.
T Consensus 1547 e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-------el~~~~~~l~~~ 1619 (2382)
T KOG0890|consen 1547 EYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-------ELENSIEELKKV 1619 (2382)
T ss_pred cchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-------HHHHHHHHhhcc
Confidence 444443 22222222111 1112233222211111 0 01222222221110 000000000122
Q ss_pred CCChH------HHHHHHHHHhhcCCHHHHHHHH---Hh----CCCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 007871 441 EPKLE------HYSCLVDLLSRAGELEQALNIV---ES----MPMK-----PNLALWGTLLLACRNHQNVTLAEVVVEGL 502 (586)
Q Consensus 441 ~~~~~------~~~~l~~~~~~~g~~~~A~~~~---~~----~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 502 (586)
.++.. -|..-+. +.+....+.+-. .+ ...+ --..+|..........|.++.|...+-.+
T Consensus 1620 s~~~~s~~~sd~W~~Rl~---~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1620 SYDEDSANNSDNWKNRLE---RTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred CccccccccchhHHHHHH---HhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 22221 1211111 222222222211 11 1122 23578888888899999999999998888
Q ss_pred HhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 503 VELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 503 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
.+.. -+.++...+..+...|+...|..+++.........
T Consensus 1697 ~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1697 KESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred hhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 8776 45678889999999999999999999988765543
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.55 E-value=11 Score=33.29 Aligned_cols=58 Identities=5% Similarity=-0.138 Sum_probs=48.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.-.++...|++-++++....++...|.|..+|+.-+.+....=+.++|.+-+....+.
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3344567889999999999999999999999999998888888888888888877663
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=83.42 E-value=6.1 Score=33.25 Aligned_cols=46 Identities=11% Similarity=0.047 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccC
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKE 544 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 544 (586)
+++|...|+++.+.+|.|......|-.+ ++|-++..++.+.+....
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~~~q 141 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGLGQQ 141 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS---
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHhhhh
Confidence 6778888888888999988666655422 357788888877765433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=83.21 E-value=9.8 Score=37.16 Aligned_cols=88 Identities=15% Similarity=0.114 Sum_probs=43.2
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhcCChHHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-MK-PNLALWGTLLLACRNHQNVTLA 495 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~~~~~~~~a 495 (586)
....|+++.+.+.+....+ -+.....+...+++...+.|++++|...-..|- .. .++........+....|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 3455666666555555544 233344455555555556666666665555441 11 1222222222223344555566
Q ss_pred HHHHHHHHhcCC
Q 007871 496 EVVVEGLVELKA 507 (586)
Q Consensus 496 ~~~~~~~~~~~p 507 (586)
...++++..++|
T Consensus 411 ~~~wk~~~~~~~ 422 (831)
T PRK15180 411 YHYWKRVLLLNP 422 (831)
T ss_pred HHHHHHHhccCC
Confidence 666666655553
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.19 E-value=6.4 Score=34.15 Aligned_cols=63 Identities=14% Similarity=0.080 Sum_probs=41.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 448 SCLVDLLSRAGELEQALNIVES-MPMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 448 ~~l~~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
+..+..+.+.+.+++|+..... .+.+| +..+-..++..++-.|+|++|..-++-+-++.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3445566677777777776643 35555 445555666667777888888777777777776643
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=81.88 E-value=9.8 Score=33.61 Aligned_cols=64 Identities=19% Similarity=0.090 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhcCChHH-------HHHHHHHHHhcC--CC----CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 478 LWGTLLLACRNHQNVTL-------AEVVVEGLVELK--AD----DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
.+..+.+.|...|+.+. |...|+++.+.. |. ...+...++.+..+.|++++|.+.+.++...+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 34445555666666443 444444444432 22 245677788888888999999988888876543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.80 E-value=9.8 Score=24.68 Aligned_cols=28 Identities=18% Similarity=0.052 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 512 LYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
....++-++.+.|+|++|.++.+.+.+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4566788899999999999999999873
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=81.74 E-value=54 Score=31.96 Aligned_cols=150 Identities=19% Similarity=0.191 Sum_probs=97.5
Q ss_pred cCCHHHHHHHHhccCC----CCHhHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCCHH
Q 007871 355 CGSLDEARRIFYSMTK----KNVISYNVMIAG-LGMNGFGEEALKCFAQMETEGIPKDD----LIFLGVLIACSHSGLAT 425 (586)
Q Consensus 355 ~g~~~~a~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~ 425 (586)
.|+-+++.+.+..+.. +....|-.|+.+ .....++.+|+.+|+...- .-|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5788888888887763 345566666665 4456688888888887765 34443 23444455567788888
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHH-HHHHHhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007871 426 EGYRIFQSMKRHCGIEPKLEHYSC-LVDLLSRA---GELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEG 501 (586)
Q Consensus 426 ~A~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 501 (586)
++..+-.....++...|-..-|.. +...+.+. -..+.-..++..|.-.-....|..+...-.-.|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 888777777765555554433332 33333333 23455555666664333456777777778888898888888888
Q ss_pred HHhcC
Q 007871 502 LVELK 506 (586)
Q Consensus 502 ~~~~~ 506 (586)
+..+.
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 88875
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.48 E-value=16 Score=31.59 Aligned_cols=73 Identities=15% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhh--CCCCChHHHHHHHHHHhhcCCHHHH
Q 007871 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC--GIEPKLEHYSCLVDLLSRAGELEQA 463 (586)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A 463 (586)
+.|.+.|-++...+.--++.....|...|. ..+.+++.+++.+..+-. +-.+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444555555544444434333333333333 344555555555444311 1133455555555555555555544
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.00 E-value=4.7 Score=35.50 Aligned_cols=84 Identities=13% Similarity=0.038 Sum_probs=35.7
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCChHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKL-EHYSCLVDLLSRAGELEQALNIVESM-PMKPNLALWGT-LLLACRNHQNVTL 494 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~~~~~~ 494 (586)
|.....++.|...+.+.+. +.|+. .-|..=+.++.+..+++.+..--.+. ...|+..--.. +..+......++.
T Consensus 20 ~f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 3334445555555544444 23333 33333444444555554444332222 23343332222 2222444455555
Q ss_pred HHHHHHHHHh
Q 007871 495 AEVVVEGLVE 504 (586)
Q Consensus 495 a~~~~~~~~~ 504 (586)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.40 E-value=51 Score=30.84 Aligned_cols=117 Identities=10% Similarity=-0.087 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 007871 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG-------ELEQALNIVESMPMKPNLALWGTLLLACRN----HQN 491 (586)
Q Consensus 423 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~ 491 (586)
+..+|..++++.... |..+.......+...|..-. +...|...+.++...-++.....+...|.. ..+
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 556666666666552 44332222333333333321 223566666665333344444444444322 347
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---------------CchHHHHHHHHHHhCCCcc
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAG---------------MWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~~~~ 543 (586)
..+|..+|+++.+.+. ......+. .+...| +...|...+......+...
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 7888888888888776 55555555 555554 6667777777776666543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=80.36 E-value=1e+02 Score=34.41 Aligned_cols=254 Identities=9% Similarity=-0.015 Sum_probs=145.8
Q ss_pred HHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCC-HHHHHHHHHhCCCCChhHHH
Q 007871 167 RSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD-ISSARILFEHMPIKDLISWN 245 (586)
Q Consensus 167 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~ 245 (586)
..+.+.+.++|+......+..+.+.+..+....+...+..+|...-...+.++ ...+. ......+...+..+|..+..
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL-~~l~~~~~~~~~L~~~L~~~d~~VR~ 702 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL-RELVEVLPPAPALRDHLGSPDPVVRA 702 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHH-HHHHhccCchHHHHHHhcCCCHHHHH
Confidence 34555556777777777777777777655434444444456555444554444 33321 11122233333456777766
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 007871 246 SMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325 (586)
Q Consensus 246 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 325 (586)
..+..+...+.- ....+...+..+|...-...+.++.+.+..+. +..+.. .++...-.....++...+..+.
T Consensus 703 ~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~~ 774 (897)
T PRK13800 703 AALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGGA 774 (897)
T ss_pred HHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhccccc
Confidence 777766654321 12344555666777666666777776655432 222222 4566666666667766665432
Q ss_pred -HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 007871 326 -GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEAR-RIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG 403 (586)
Q Consensus 326 -a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 403 (586)
+...+..+.+ .++..+-...+.++...|..+.+. .+...+..++...-...+.++...+. +++...+..+..
T Consensus 775 ~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-- 848 (897)
T PRK13800 775 PAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-- 848 (897)
T ss_pred hhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc--
Confidence 2333444333 346777778888888888765543 34444556676666667777777765 455666666654
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 404 IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 404 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
.|+...-...+.++.+.+....+...+..+.+
T Consensus 849 -D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 -DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred -CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 56666666666677665434456666666665
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=80.29 E-value=3.6 Score=21.86 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=10.1
Q ss_pred HHHHHHhhcCCHHHHHHHHH
Q 007871 449 CLVDLLSRAGELEQALNIVE 468 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~ 468 (586)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.14 E-value=5.5 Score=39.88 Aligned_cols=100 Identities=16% Similarity=0.019 Sum_probs=74.6
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHH
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEP--KLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~ 494 (586)
...|+...|...+..... ..| .......|...+.+.|...+|..++.+. . ....+.++..+..++....+++.
T Consensus 618 r~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 446888888888887754 333 2233456777777888888888887654 2 23355677778888888899999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 495 AEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 495 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
|++.|+.+.++.|+++.+-+.|..+-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999999999998888776554
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.05 E-value=4.2 Score=37.09 Aligned_cols=85 Identities=11% Similarity=0.032 Sum_probs=61.3
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIF 565 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (586)
..+.|+.++|..+|+.+..+.|.++.++..++......++.-+|.++|-+.. ..+|+.+- +.+..++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL----tisP~nse--------ALvnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL----TISPGNSE--------ALVNRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee----eeCCCchH--------HHhhhhcc
Confidence 4577899999999999999999999999999888887788888888875543 33444433 33445667
Q ss_pred CCChhHHHHHHHHHHHH
Q 007871 566 DVQSEELELVIQSFVKT 582 (586)
Q Consensus 566 ~~~~~~~~~~l~~~~~~ 582 (586)
-|-+.+|.+..=+....
T Consensus 194 ~plV~~iD~r~l~svds 210 (472)
T KOG3824|consen 194 TPLVSAIDRRMLRSVDS 210 (472)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 77777777654444433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.1 bits (155), Expect = 8e-11
Identities = 69/493 (13%), Positives = 140/493 (28%), Gaps = 146/493 (29%)
Query: 27 HILQILAQLTTN----DLITEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNT 82
+ + + + +I +S L + + + ++ ++ + N +
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 83 MIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYP--FV--------LKACGVLMGL--VE 130
I+ T+ P Y+ +R L DN + V L+ L+ L +
Sbjct: 97 PIK--TEQRQPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQA--LLELRPAK 151
Query: 131 GTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDL---------VSW 181
I G + G ++ + W
Sbjct: 152 NVLIDG----VL---------------------GSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 182 NLVLRGFVECGEMGKAREVFDEMPQK-----DAISWSIMIDGYRKKKGDISSA----RIL 232
+ V EM QK D +W+ D K I S R L
Sbjct: 187 -------LNLKNCNSPETVL-EMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 233 FEHMPIKD--LI---SWNSMI----DGYAKIGDLV--AAQQLFNEMPERNVFSWSI--MI 279
+ P ++ L+ N+ + KI L+ +Q+ + + S+
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKI--LLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 280 DGYAQHGNPKEALYLF------------REMLCQGVRPDVISVMGAISACAQVGALDLGK 327
P E L RE+ P +S+ I+ + G
Sbjct: 296 MTL----TPDEVKSLLLKYLDCRPQDLPREV-LTT-NPRRLSI---IAESIRDGLATWDN 346
Query: 328 WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT--KKNV-ISYNVMIAGLG 384
W HV + T +I+ + E R++F ++ + I ++ +
Sbjct: 347 WKHVNCDK---------LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL-IW 396
Query: 385 MNGFGEEALKCFAQMETEGI----PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440
+ + + ++ + PK+ I + S I+ +K
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-------PS--------IYLELKVKLEN 441
Query: 441 EPKL-----EHYS 448
E L +HY+
Sbjct: 442 EYALHRSIVDHYN 454
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 3e-06
Identities = 65/455 (14%), Positives = 127/455 (27%), Gaps = 161/455 (35%)
Query: 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFR 296
KD++S D + D ++ + +++ S ID +
Sbjct: 19 KDILSVF--EDAFVDNFD-------CKDVQDMPKSILS-KEEIDHIIMSKDAVSGTLRLF 68
Query: 297 EMLCQ------------GVRPDVISVMGAISACAQVGALDLGKWI----------HVFMK 334
L +R + +M I + ++ +I VF K
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 335 R--SRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392
SR+ + ++ AL+ L A KNV+ G+ G G+
Sbjct: 129 YNVSRLQPYLKLRQALL-------ELRPA---------KNVLID-------GVLGSGKTW 165
Query: 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE-GYRIF-QSMKRHCGIEPKLEH---- 446
+ L C + + ++IF ++K E LE
Sbjct: 166 V--------------------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205
Query: 447 -------YSCLVDLLS----RAGELEQALNIVESMPMKPN--LAL--------WGTLLLA 485
++ D S R ++ L + N L L W L+
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 486 CR------------------------NHQNVTLAEVVVEGL----VELKADD-----CGL 512
C+ +H ++TL V+ L ++ + D
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 513 YVLLSNIYA-----DAGMWEHALRIRKMMRKRKIKK--------ETGR-----SVIEIDG 554
+I A W++ + I+ E + SV
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 555 NIKEFVSGEIF--DVQSEELELVIQSFVKTT-IER 586
+I + + DV ++ +V+ K + +E+
Sbjct: 386 HIPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEK 419
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.2 bits (144), Expect = 1e-09
Identities = 17/134 (12%), Positives = 42/134 (31%), Gaps = 8/134 (5%)
Query: 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPER-------NVFSWSIMIDGYAQHGNPKEAL 292
+ L A L + + ++ ++ G+A+ G KE +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW-IHVFMKRSRITMDMIVQTALIDM 351
Y+ + G+ PD++S A+ + M + + + + L+
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245
Query: 352 YMKCGSLDEARRIF 365
+ L ++
Sbjct: 246 EDRATVLKAVHKVK 259
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.3 bits (139), Expect = 5e-09
Identities = 24/197 (12%), Positives = 57/197 (28%), Gaps = 7/197 (3%)
Query: 287 NPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQT 346
+ + A L P + + +LD+ + +++++
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131
Query: 347 ALIDMYMKCGSLDEARRIFYSMTKK-------NVISYNVMIAGLGMNGFGEEALKCFAQM 399
A + L A + + + YN ++ G G +E + +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 400 ETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459
+ G+ D L + L G++ + + L+ RA
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 460 LEQALNIVESMPMKPNL 476
L+ + + + P L
Sbjct: 252 LKAVHKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.0 bits (102), Expect = 1e-04
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 61 NMDQAERLFNQIYQ-------PNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNY 113
+ A L + M+N ++ G+ + ++ + +K GL D
Sbjct: 142 QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201
Query: 114 TYPFVLKACG 123
+Y L+ G
Sbjct: 202 SYAAALQCMG 211
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 586 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.95 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.85 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.6 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.55 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.46 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.46 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.43 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.42 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.42 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.41 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.35 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.22 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.17 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.17 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.16 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.15 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.14 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.13 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.13 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.13 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.12 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.07 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.05 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.01 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.0 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.98 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.97 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.97 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.96 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.94 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.94 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.92 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.88 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.87 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.87 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.86 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.85 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.84 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.84 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.84 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.83 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.81 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.8 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.8 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.8 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.78 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.78 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.78 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.78 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.72 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.72 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.68 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.67 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.67 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.66 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.65 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.61 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.61 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.61 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.61 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.61 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.61 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.6 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.59 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.58 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.58 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.58 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.57 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.57 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.56 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.52 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.52 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.51 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.5 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.48 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.48 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.43 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.42 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.42 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.4 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.4 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.37 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.36 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.34 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.34 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.31 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.3 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.3 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.3 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.29 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.29 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.28 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.26 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.25 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.25 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.24 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.19 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.19 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.19 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.18 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.18 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.12 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.12 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.12 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.1 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.09 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.07 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.03 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.96 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.94 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.91 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.85 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.8 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.79 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.78 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.78 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.76 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.7 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.69 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.69 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.68 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.5 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.44 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.28 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.18 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.11 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.09 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.08 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.02 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.87 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.85 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.79 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.79 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.78 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.77 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.72 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.7 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.56 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.39 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.14 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.75 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.52 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 95.0 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.98 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.96 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.92 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 94.83 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.73 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.2 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.1 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.84 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.32 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 93.25 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.13 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.06 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.94 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 92.92 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.17 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.77 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 91.67 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.21 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.83 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.56 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.97 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.57 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.71 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.4 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.24 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.37 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.2 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 87.11 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.83 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.26 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.32 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 84.56 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.11 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.56 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 83.15 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 80.04 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=356.48 Aligned_cols=472 Identities=10% Similarity=-0.015 Sum_probs=395.2
Q ss_pred ccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHH
Q 007871 55 TSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEI 134 (586)
Q Consensus 55 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 134 (586)
+... |.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.. ..|+..++..++.+|...|++++|..+
T Consensus 63 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 63 TSTD-GSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccc-CccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 4456 7788888888888888999999999999999999999999999985 467888999999999999999999999
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC-------------------ChhhHHHHHHHHHhCCChh
Q 007871 135 HGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK-------------------DLVSWNLVLRGFVECGEMG 195 (586)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~ 195 (586)
++.+.. .+++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 998865 3688999999999999999999999999965444 3789999999999999999
Q ss_pred HHHHHHhhCC--CCChh-HHHHHHHHHhhccCCHHHHHHHHH-----hCCCC----ChhHHHHHHHHHHhcCCHHHHHHH
Q 007871 196 KAREVFDEMP--QKDAI-SWSIMIDGYRKKKGDISSARILFE-----HMPIK----DLISWNSMIDGYAKIGDLVAAQQL 263 (586)
Q Consensus 196 ~A~~~~~~~~--~~~~~-~~~~ll~~~~~~~g~~~~a~~~~~-----~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~ 263 (586)
+|+.+|+++. .|+.. .+..+...+ ...+.. ...... .+... ...+|+.++..|.+.|++++|.++
T Consensus 218 ~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 218 RAKECYKEALMVDAKCYEAFDQLVSNH-LLTADE--EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHTT-CSCHHH--HHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhhHHHHHHHHhh-cccchh--HHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 9999999998 55543 333333333 222222 222222 22222 334566678889999999999999
Q ss_pred HhhCCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc
Q 007871 264 FNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD 341 (586)
Q Consensus 264 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (586)
|+++.+ ++..+|+.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 999988 889999999999999999999999999999875 4577889999999999999999999999998764 557
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 418 (586)
..++..++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8899999999999999999999999875 3568899999999999999999999999999853 44778999999999
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhc
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-------PMKPN--LALWGTLLLACRNH 489 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~ 489 (586)
.+.|++++|.++|+++.+ ..+.+..+|..++.+|.+.|++++|.++|+++ +..|+ ..+|..++.+|...
T Consensus 452 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 999999999999999998 34568899999999999999999999999987 34676 78999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
|++++|+..++++.+.+|+++.+|..++.+|.+.|++++|.++++++.+.
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-39 Score=334.64 Aligned_cols=473 Identities=8% Similarity=0.005 Sum_probs=402.0
Q ss_pred CCChhhHhHHHHHhccCCCCChHHHHHHHhcc--CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHH
Q 007871 41 ITEPFTLSQLLMSLTSPNTLNMDQAERLFNQI--YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFV 118 (586)
Q Consensus 41 ~~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 118 (586)
.+++..++.++. .+.+. |++++|..+|+++ ..|+..++..++.+|.+.|++++|..+|+.+... .++..+++.+
T Consensus 81 ~~~~~~~~~~~~-~~~~~-g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRH-DALMQ-QQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHH-HHHHT-TCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHc-cCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 367888999999 89999 9999999999998 4578889999999999999999999999998653 6788899999
Q ss_pred HHHHhccCCchHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC---Chhh
Q 007871 119 LKACGVLMGLVEGTEIHGEVVKM---------------GFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK---DLVS 180 (586)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~ 180 (586)
+.++.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|.+.|+++... +..+
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 236 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA 236 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence 99999999999999999853211 22446889999999999999999999999988642 4555
Q ss_pred HHHHHHHHHhCCChhHHHHH---HhhCCC----CChhHHHHHHHHHhhccCCHHHHHHHHHhCCC--CChhHHHHHHHHH
Q 007871 181 WNLVLRGFVECGEMGKAREV---FDEMPQ----KDAISWSIMIDGYRKKKGDISSARILFEHMPI--KDLISWNSMIDGY 251 (586)
Q Consensus 181 ~~~l~~~~~~~g~~~~A~~~---~~~~~~----~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~ 251 (586)
+..+...+...+..+.+... +..+.. .....|+.++..+ .+.|++++|.++|+.+.. ++..+++.++..|
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT-SHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT-TTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH-cCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 66665555444332222211 222221 1223445556667 889999999999999986 7999999999999
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 007871 252 AKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKW 328 (586)
Q Consensus 252 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~ 328 (586)
.+.|++++|.++|+++.+ .+..+|+.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999863 467889999999999999999999999999763 6678899999999999999999999
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 007871 329 IHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP 405 (586)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 405 (586)
+|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.++|+++.+. .+
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 472 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-FQ 472 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CC
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Confidence 999998864 4467899999999999999999999999875 357889999999999999999999999999985 34
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhh---CCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHH
Q 007871 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHC---GIEPK--LEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLAL 478 (586)
Q Consensus 406 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~ 478 (586)
.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ .. +.+..+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 552 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Confidence 578899999999999999999999999998732 55676 789999999999999999999999987 22 347899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
|..+..+|...|++++|...++++.+.+|+++..+..++.+|.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-27 Score=230.58 Aligned_cols=346 Identities=11% Similarity=0.037 Sum_probs=198.2
Q ss_pred HHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHH
Q 007871 187 GFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQ 261 (586)
Q Consensus 187 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 261 (586)
.+.+.|++++|+..++.+. .|+......++..++...|++++|...++... +.+..+|..+...+.+.|++++|.
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 3444455555555554443 33333333333322245555555555544333 334555666666666666666666
Q ss_pred HHHhhCCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCC
Q 007871 262 QLFNEMPE--R-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRI 338 (586)
Q Consensus 262 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 338 (586)
..|+++.+ | +..+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...|+.+.+..
T Consensus 88 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 66665542 2 33456666666666666666666666666542 2233344455555566666666666666665553
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 007871 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGV 414 (586)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l 414 (586)
+.+..++..+..++...|++++|...|+++. ..+...|..+...+...|++++|+..+++.... .| +..++..+
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 243 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNL 243 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHH
Confidence 2334556666666666666666666666554 223455666666666666666666666666552 33 34556666
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCh
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNV 492 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~ 492 (586)
..++...|++++|...++++.+ ..+.+..++..++.++.+.|++++|.+.++++ ..+++..++..+...+...|++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCH
Confidence 6666666666666666666665 23334556666666666666666666666655 1233556666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 493 TLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 493 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
++|+..++++.+..|+++.++..++.+|.+.|++++|...++++.+
T Consensus 322 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 322 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666654
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-27 Score=230.79 Aligned_cols=372 Identities=10% Similarity=0.021 Sum_probs=283.5
Q ss_pred HHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhhHHHHHHHHHhCCChh
Q 007871 119 LKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE---IKDLVSWNLVLRGFVECGEMG 195 (586)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 195 (586)
...+...|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++... +.+..+|..+...+.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 344556777777777777776643 2234455566666667777777766665432 234556666666666666666
Q ss_pred HHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch
Q 007871 196 KAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--R-NV 272 (586)
Q Consensus 196 ~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~ 272 (586)
+|+..|+++.. ..+.+..+|..+..++.+.|++++|.+.|+++.+ | +.
T Consensus 85 ~A~~~~~~al~-----------------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 135 (388)
T 1w3b_A 85 EAIEHYRHALR-----------------------------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135 (388)
T ss_dssp HHHHHHHHHHH-----------------------------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHH-----------------------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 66666655430 0122444566666667777777777777766653 3 34
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMY 352 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 352 (586)
..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+.+.+.+ +.+...+..+..++
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 213 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVL 213 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHH
Confidence 556677777788888888888888887753 4456777788888888888888888888887765 34566778888888
Q ss_pred HhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 007871 353 MKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYR 429 (586)
Q Consensus 353 ~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 429 (586)
...|++++|...+++.. ..+..++..+...|...|++++|+..|+++.+.+ +.+..++..+..++...|++++|..
T Consensus 214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 292 (388)
T 1w3b_A 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAED 292 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888665 3457788899999999999999999999999842 3356789999999999999999999
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
.++++.+ ..+.+..++..++.++...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|
T Consensus 293 ~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 293 CYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999998 35678899999999999999999999999987 3344 678899999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhcCC
Q 007871 508 DDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 508 ~~~~~~~~l~~~~~~~g~ 525 (586)
.++.++..++.++...|+
T Consensus 371 ~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 371 TFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHhHHHHHHHccC
Confidence 999999999999888764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=236.07 Aligned_cols=184 Identities=16% Similarity=0.148 Sum_probs=169.2
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hhHHHHHHHHHHHcCCCCchh
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA---------LDLGKWIHVFMKRSRITMDMI 343 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 343 (586)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|..+|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 578999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMT----KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 419 (586)
+|++++.+|++.|++++|.++|++|. .||..+|+++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999886 48999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc
Q 007871 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 457 (586)
+.|++++|.+++++|.+ .+..|+..||+.++..+...
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999998 59999999999999888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=223.22 Aligned_cols=200 Identities=12% Similarity=0.110 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC---------H
Q 007871 289 KEALYLFREMLCQGVRPDV-ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS---------L 358 (586)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 358 (586)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|..+|++|.+.|++||..+|++|+.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766554 45888999999999999999999999999999999999999999987664 7
Q ss_pred HHHHHHHhccC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 007871 359 DEARRIFYSMT----KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSM 434 (586)
Q Consensus 359 ~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 434 (586)
+.|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999987 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 007871 435 KRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM---PMKPNLALWGTLLLACRNH 489 (586)
Q Consensus 435 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 489 (586)
.+ .|+.||..+|+.|+.+|++.|+.++|.+++++| +..|+..||+.++..|...
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99 599999999999999999999999999999999 5789999999999988753
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-23 Score=211.44 Aligned_cols=388 Identities=10% Similarity=-0.037 Sum_probs=311.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCC--CCChhhHHHHHHHHHhCCChhHHHHHHhhCC--CC-ChhHHHHHHHHHhh
Q 007871 147 VFVVNGLIGMYSKCGHMGCARSVFEGSE--IKDLVSWNLVLRGFVECGEMGKAREVFDEMP--QK-DAISWSIMIDGYRK 221 (586)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~ 221 (586)
...+..+...+.+.|++++|...|+++. .|+..+|..+..++.+.|++++|+..++++. .| +...+..+...+ .
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN-E 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH-H
Confidence 4567778889999999999999998775 3688899999999999999999999999987 44 456777777777 8
Q ss_pred ccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHH----------------------------------
Q 007871 222 KKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLF---------------------------------- 264 (586)
Q Consensus 222 ~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~---------------------------------- 264 (586)
..|++++|...|+.+. +++......++..+........+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999998775 223333444444333322222222211
Q ss_pred ----hhCCC---------C-ChhHHHHHHHHHHh---CCCchHHHHHHHHHHH-----CCC--------CCCHHHHHHHH
Q 007871 265 ----NEMPE---------R-NVFSWSIMIDGYAQ---HGNPKEALYLFREMLC-----QGV--------RPDVISVMGAI 314 (586)
Q Consensus 265 ----~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~l~ 314 (586)
..... | +...+......+.. .|++++|...|+++.+ ... +.+...+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 11110 1 13444444554554 8999999999999988 311 22345677888
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHH
Q 007871 315 SACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 391 (586)
..+...|++++|...++.+.+.... ...+..+..+|...|++++|...++.+.+ .+...+..+...+...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8899999999999999999888644 88888999999999999999999998763 467789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM- 470 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 470 (586)
|...++++.... +.+...+..+...+...|++++|...++.+.+. .+.+...+..++.+|...|++++|...++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999852 335678889999999999999999999999883 4557788999999999999999999999887
Q ss_pred ---CCCCC----HHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 471 ---PMKPN----LALWGTLLLACRN---HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 471 ---~~~p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
+..++ ...+..+...+.. .|++++|...++++.+..|.++.++..++.+|.+.|++++|...++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 22222 4488888999999 9999999999999999999999999999999999999999999999998753
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-23 Score=210.60 Aligned_cols=428 Identities=11% Similarity=-0.036 Sum_probs=229.8
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007871 77 TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156 (586)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (586)
...|..+...+.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|.+.++++.+.. +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567788888999999999999999998864 3366788888888999999999999999988865 3456788888888
Q ss_pred HHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCC--C----ChhHHHHHHHHHhhccCCHHHHH
Q 007871 157 YSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQ--K----DAISWSIMIDGYRKKKGDISSAR 230 (586)
Q Consensus 157 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~ll~~~~~~~g~~~~a~ 230 (586)
+...|++++|...|+.+ ..++......+..+...+....|...++.+.. | ........+..+ ....+.+.+.
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 180 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF-FGIFDSHLEV 180 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHH-HHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHH-HHhcChHHHH
Confidence 99999999998888633 22222233334455556666777777777751 1 111112222223 3344455555
Q ss_pred HHHHhCCCCChh---HHHHHHHHHHhc--------CCHHHHHHHHhhCCC--CC--------hhHHHHHHHHHHhCCCch
Q 007871 231 ILFEHMPIKDLI---SWNSMIDGYAKI--------GDLVAAQQLFNEMPE--RN--------VFSWSIMIDGYAQHGNPK 289 (586)
Q Consensus 231 ~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~ 289 (586)
..+......+.. ....+...+... |++++|..+|+++.+ |+ ..++..+...+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 555444433222 233333222221 355666666665543 22 123444455555666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 007871 290 EALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT 369 (586)
Q Consensus 290 ~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 369 (586)
+|...++++.+. .|+...+..+...+...|+++.|...++.+.+.. +.+..++..+..+|...|++++|...++++.
T Consensus 261 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 666666666654 3345555555566666666666666666655543 2234455555555555555555555555443
Q ss_pred ---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC----
Q 007871 370 ---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP---- 442 (586)
Q Consensus 370 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---- 442 (586)
..+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++.+.+.....+
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 123344555555555555555555555555542 122234445555555555555555555555444110000
Q ss_pred ChHHHHHHHHHHhhc----------CCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 443 KLEHYSCLVDLLSRA----------GELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
....+..+..++... |++++|...++++ . .+.+...+..+...+...|++++|...++++.+..|.++
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 111122333444444 5555555555444 1 112344444444445555555555555555555554444
Q ss_pred ch
Q 007871 511 GL 512 (586)
Q Consensus 511 ~~ 512 (586)
..
T Consensus 497 ~~ 498 (537)
T 3fp2_A 497 EK 498 (537)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-23 Score=210.77 Aligned_cols=433 Identities=11% Similarity=-0.032 Sum_probs=324.9
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 007871 77 TYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGM 156 (586)
Q Consensus 77 ~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (586)
...|..+...+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|...++.+.+.. +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3467778888999999999999999998864 688899999999999999999999999999865 3456788899999
Q ss_pred HHhcCChhHHHHHhccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC----CCChhHHHHH---HHHHhhccCCH
Q 007871 157 YSKCGHMGCARSVFEGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP----QKDAISWSIM---IDGYRKKKGDI 226 (586)
Q Consensus 157 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l---l~~~~~~~g~~ 226 (586)
|...|++++|...|+++.. .+......++..+........+...+..+. .|+...+..- .... ......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ-ENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc-cCCchh
Confidence 9999999999999876542 234444445544444433333333332211 0111000000 0000 111111
Q ss_pred HHHHHHHHhCC----------CCChhHHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C-ChhHHH
Q 007871 227 SSARILFEHMP----------IKDLISWNSMIDGYAK---IGDLVAAQQLFNEMPE----------------R-NVFSWS 276 (586)
Q Consensus 227 ~~a~~~~~~~~----------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~ 276 (586)
..+...+.... +.+...+......+.. .|++++|...|+++.+ | +..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 11111222111 1234555555555554 8999999999887654 1 346788
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 007871 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356 (586)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (586)
.+...+...|++++|...++++.+.. |+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88899999999999999999999875 337788889999999999999999999998875 446678889999999999
Q ss_pred CHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007871 357 SLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433 (586)
Q Consensus 357 ~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (586)
++++|...++.+. ..+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++.
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999875 346778899999999999999999999999884 233567888999999999999999999999
Q ss_pred hHHhhCCCCC----hHHHHHHHHHHhh---cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 434 MKRHCGIEPK----LEHYSCLVDLLSR---AGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 434 ~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
+.......++ ...+..++.++.. .|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8873222222 3489999999999 99999999999987 2 234678888999999999999999999999999
Q ss_pred cCCCCcchHHHHH
Q 007871 505 LKADDCGLYVLLS 517 (586)
Q Consensus 505 ~~p~~~~~~~~l~ 517 (586)
..|.++..+..+.
T Consensus 478 ~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 478 LARTMEEKLQAIT 490 (514)
T ss_dssp HCSSHHHHHHHHH
T ss_pred hccccHHHHHHHH
Confidence 9999988877663
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-21 Score=196.95 Aligned_cols=303 Identities=13% Similarity=0.039 Sum_probs=162.8
Q ss_pred hHHHHHHHHHhhccCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 007871 210 ISWSIMIDGYRKKKGDISSARILFEHMP---IKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYA 283 (586)
Q Consensus 210 ~~~~~ll~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 283 (586)
..+..+...+ .+.|++++|...|+.+. +.+..++..+..++...|++++|...|+++.+ .+..++..+..++.
T Consensus 27 ~~~~~~~~~~-~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 27 EKHLELGKKL-LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3444455555 56666666666666543 23555666666666666666666666666543 23455666666666
Q ss_pred hCCCchHHHHHHHHHHHCCCCCCH---HHHHHHHHH------------HhccCChhHHHHHHHHHHHcCCCCchhHHHHH
Q 007871 284 QHGNPKEALYLFREMLCQGVRPDV---ISVMGAISA------------CAQVGALDLGKWIHVFMKRSRITMDMIVQTAL 348 (586)
Q Consensus 284 ~~~~~~~A~~~~~~m~~~g~~~~~---~~~~~l~~~------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 348 (586)
..|++++|...|+++.+.. +.+. ..+..+... +...|++++|...++.+.+.. +.+..++..+
T Consensus 106 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 183 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELR 183 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 6666666666666666542 2222 334433222 455556666666665555543 2344455555
Q ss_pred HHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH----------
Q 007871 349 IDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGV---------- 414 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l---------- 414 (586)
+.+|...|++++|.+.|+.+. ..+..+|..++..|...|++++|+..|+++.. ..|+. ..+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~ 261 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLI 261 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHH
Confidence 555556666666655555544 23455555555555566666666666655554 22322 222222
Q ss_pred --HHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007871 415 --LIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLAC 486 (586)
Q Consensus 415 --~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 486 (586)
...|...|++++|..+++.+.+. .+.+ ...+..++.++.+.|++++|...++++ ...| +...|..+..+|
T Consensus 262 ~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 262 ESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44555555555555555555552 1111 234555555555555555555555554 2222 455555555555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
...|++++|...++++++..|.++.++..++.+
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 555555555555555555555555555555443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-21 Score=195.46 Aligned_cols=358 Identities=10% Similarity=-0.027 Sum_probs=227.5
Q ss_pred CchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhhHHHHHHHHHhCCChhHHHHHHhhCC--CC-ChhHHHHHHHH
Q 007871 145 CDVFVVNGLIGMYSKCGHMGCARSVFEGSE---IKDLVSWNLVLRGFVECGEMGKAREVFDEMP--QK-DAISWSIMIDG 218 (586)
Q Consensus 145 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~ 218 (586)
.+...+..+...+.+.|++++|..+|+++. +.+..+|..+..++...|++++|+..|+++. .| +...+..+...
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 345566777777777777777777776543 2356667777777777777777777776665 22 23334444444
Q ss_pred HhhccCCHHHHHHHHHhCCCC---Ch---hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHH
Q 007871 219 YRKKKGDISSARILFEHMPIK---DL---ISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEAL 292 (586)
Q Consensus 219 ~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 292 (586)
+ ...|++++|...|+.+... +. ..+..++..+... .+..+...+...|++++|+
T Consensus 104 ~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A~ 163 (450)
T 2y4t_A 104 L-LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAAI 163 (450)
T ss_dssp H-HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHHH
T ss_pred H-HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHHH
Confidence 4 5555555555555544321 22 3333332221100 1112233466677777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--
Q 007871 293 YLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK-- 370 (586)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 370 (586)
..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+.+..
T Consensus 164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777776653 4456666667777777777777777777766553 34556667777777777777777777776642
Q ss_pred C-CHhHHHHH------------HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHhhccCCHHHHHHHHH
Q 007871 371 K-NVISYNVM------------IAGLGMNGFGEEALKCFAQMETEGIPKD-----DLIFLGVLIACSHSGLATEGYRIFQ 432 (586)
Q Consensus 371 ~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (586)
| +...+..+ ...+...|++++|...|+++.. ..|+ ...+..+..++.+.|++++|...++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2 33333333 7778888999999999998887 3454 3467778888888999999999999
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------HHhcC-----ChH
Q 007871 433 SMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLA------------CRNHQ-----NVT 493 (586)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~~~~~-----~~~ 493 (586)
.+.+ ..+.+...+..++.+|...|++++|...++++ ...| +...+..+..+ |...| +.+
T Consensus 320 ~a~~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~ 397 (450)
T 2y4t_A 320 EVLQ--MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397 (450)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTT
T ss_pred HHHH--hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHH
Confidence 8877 24557788888999999999999999998877 4455 45555555522 33333 667
Q ss_pred HHHHHHHH-HHhcCCCCcc----------hHHHHHHHHHhcCCchH
Q 007871 494 LAEVVVEG-LVELKADDCG----------LYVLLSNIYADAGMWEH 528 (586)
Q Consensus 494 ~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~ 528 (586)
++.+.+++ +.+..|++.. .+..+..+|...|+.+.
T Consensus 398 ~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 398 EIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 78888886 6666676432 44555666666665544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.2e-21 Score=195.99 Aligned_cols=411 Identities=11% Similarity=-0.003 Sum_probs=295.9
Q ss_pred HhHHHHHhccCCCCChHHHHHHHhcc---CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHh
Q 007871 47 LSQLLMSLTSPNTLNMDQAERLFNQI---YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACG 123 (586)
Q Consensus 47 ~~~ll~~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 123 (586)
+..+-. .+.+. |++++|.+.|+++ .+.+..+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+..++.
T Consensus 28 ~~~~g~-~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 28 LKNRGN-HFFTA-KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHH-HHHHT-TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHh-ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 344444 56666 8888888888776 44566777788888888888888888888877753 224566777777778
Q ss_pred ccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCC------ChhhHHHHHHHHHhCCChhHH
Q 007871 124 VLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIK------DLVSWNLVLRGFVECGEMGKA 197 (586)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A 197 (586)
..|++++|...++.+ . ..|+.. ...+..+...+....|...++++... ........+..+....+.+.+
T Consensus 105 ~~g~~~~A~~~~~~~-~--~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVL-S--LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HcCCHHHHHHHHHHH-h--cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 888888888877522 2 122211 22233444455556677666655431 111223445556666677777
Q ss_pred HHHHhhCCCCChh---HHHHHHHHHhhc--------cCCHHHHHHHHHhCCCC---C-------hhHHHHHHHHHHhcCC
Q 007871 198 REVFDEMPQKDAI---SWSIMIDGYRKK--------KGDISSARILFEHMPIK---D-------LISWNSMIDGYAKIGD 256 (586)
Q Consensus 198 ~~~~~~~~~~~~~---~~~~ll~~~~~~--------~g~~~~a~~~~~~~~~~---~-------~~~~~~l~~~~~~~g~ 256 (586)
...+......+.. ....+...+ .. .|++++|..+++.+... + ..++..+...+...|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLY-SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHH-TCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhccccccHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 7666666533222 222222222 22 24778888888777632 2 2346777788899999
Q ss_pred HHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 007871 257 LVAAQQLFNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMK 334 (586)
Q Consensus 257 ~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 334 (586)
+++|...|++..+ |+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 259 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999874 667888899999999999999999999999864 5567889999999999999999999999998
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCC
Q 007871 335 RSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEG-----IPK 406 (586)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-----~~p 406 (586)
+.. +.+...+..+..+|...|++++|...++.+. ..+...+..+...+...|++++|...|+++.+.. ...
T Consensus 338 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 416 (537)
T 3fp2_A 338 SLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHV 416 (537)
T ss_dssp HHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHH
Confidence 875 3456788889999999999999999999876 3466789999999999999999999999987632 111
Q ss_pred CHHHHHHHHHHhhcc----------CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 407 DDLIFLGVLIACSHS----------GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
....+.....++... |++++|...++++.+ ..+.+...+..++.+|...|++++|.+.|++.
T Consensus 417 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 417 GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE--LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 122344555667777 999999999999988 34567889999999999999999999999987
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-20 Score=177.60 Aligned_cols=295 Identities=11% Similarity=0.042 Sum_probs=217.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 007871 241 LISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISAC 317 (586)
Q Consensus 241 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~ 317 (586)
+..+..+...+...|++++|...|+++.+ .+..++..+..++...|++++|...++++.+.. +.+...+..+..++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 34555566666666666666666666543 345566666666667777777777777666552 33455666666666
Q ss_pred hccCChhHHHHHHHHHHHcCCC--CchhHHHHH------------HHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHH
Q 007871 318 AQVGALDLGKWIHVFMKRSRIT--MDMIVQTAL------------IDMYMKCGSLDEARRIFYSMT---KKNVISYNVMI 380 (586)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~ 380 (586)
...|++++|...++.+.+.... .+...+..+ ...+...|++++|.+.++.+. ..+...+..+.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 6777777777777666655320 123333333 577888899999999988775 34677888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHH------------
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS------------ 448 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~------------ 448 (586)
..+...|++++|...++++... .+.+..++..+...+...|++++|...++.+.+. .+.+...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~ 238 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLI 238 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHH
Confidence 8999999999999999998875 3446678888888999999999999999998873 333444333
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 449 CLVDLLSRAGELEQALNIVESM-PMKPN-L----ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
.++..+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|+..++++.+.+|.++.++..++.+|..
T Consensus 239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 3ieg_A 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3367788999999999999887 22333 3 2344567778999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhC
Q 007871 523 AGMWEHALRIRKMMRKR 539 (586)
Q Consensus 523 ~g~~~~A~~~~~~m~~~ 539 (586)
.|++++|.+.++++.+.
T Consensus 319 ~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 99999999999999763
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-19 Score=170.31 Aligned_cols=310 Identities=12% Similarity=0.017 Sum_probs=220.3
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 007871 179 VSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLV 258 (586)
Q Consensus 179 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 258 (586)
..+..+...+...|++++|+..|+++.. ..+.+..++..+...+...|+++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~-----------------------------~~p~~~~~~~~~a~~~~~~~~~~ 54 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVD-----------------------------GDPDNYIAYYRRATVFLAMGKSK 54 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------------------hCcccHHHHHHHHHHHHHccCHH
Confidence 4455555666666666666666655440 01223445555555566666666
Q ss_pred HHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCC---CCHHHHHHH------------HHHHhcc
Q 007871 259 AAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVR---PDVISVMGA------------ISACAQV 320 (586)
Q Consensus 259 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~---~~~~~~~~l------------~~~~~~~ 320 (586)
+|...|+++.+ .+...|..+...+...|++++|...++++.+.. + .+...+..+ ...+...
T Consensus 55 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 55 AALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 66666665542 244566666666666677777777776666542 1 122233222 4667778
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHH
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFA 397 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~ 397 (586)
|++++|...++.+.+.. +.+...+..+..++...|++++|...++.+.+ .+...+..+...+...|++++|...++
T Consensus 134 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888888888887765 34567777888888888888888888887653 466788888888889999999999998
Q ss_pred HHHHCCCCCC-HHHHH------------HHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh----HHHHHHHHHHhhcCCH
Q 007871 398 QMETEGIPKD-DLIFL------------GVLIACSHSGLATEGYRIFQSMKRHCGIEPKL----EHYSCLVDLLSRAGEL 460 (586)
Q Consensus 398 ~m~~~g~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 460 (586)
+..+. .|+ ...+. .+...+...|++++|...++.+.+. .+.+. ..+..++.++...|++
T Consensus 213 ~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 213 ECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCH
Confidence 88873 343 33332 2356688899999999999999883 23333 3355688999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 007871 461 EQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523 (586)
Q Consensus 461 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 523 (586)
++|.+.+++. ...| +...+..+...+...|++++|...++++.+.+|.++.++..+..++...
T Consensus 289 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 289 VEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999987 2234 7888999999999999999999999999999999999999888776543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-16 Score=168.52 Aligned_cols=479 Identities=13% Similarity=0.085 Sum_probs=338.8
Q ss_pred hhHHHHHHHccCchHHHHHHHHHHHcCCCCChhhHhHHHHHhccCCCCChHHHHH------------HHhccCCCCc---
Q 007871 13 NPLVSLLQISKTTTHILQILAQLTTNDLITEPFTLSQLLMSLTSPNTLNMDQAER------------LFNQIYQPNT--- 77 (586)
Q Consensus 13 ~~l~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~A~~------------~~~~~~~~~~--- 77 (586)
..|+.......++.-..-.++..+..| ..++.++|++.. .|....++++.-+. .-++- .|..
T Consensus 843 ~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalak-iyid~n~npe~fL~~n~~yd~~~vgkyce~r-Dp~la~i 919 (1630)
T 1xi4_A 843 DELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAK-IYIDSNNNPERFLRENPYYDSRVVGKYCEKR-DPHLACV 919 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHH-HHhccCCCHHHHhhccCcccHHHHHHHHHhc-CcchHHH
Confidence 344444444445555555577777777 688999999999 89876345555322 22211 1111
Q ss_pred -----chHHHHHHHHhcCCCchh-HHHHHH-----------------------HhHhCC--CCCCcccHHHHHHHHhccC
Q 007871 78 -----YMHNTMIRGYTQSSNPQK-ALSFYV-----------------------NMKRKG--LLVDNYTYPFVLKACGVLM 126 (586)
Q Consensus 78 -----~~~~~ll~~~~~~~~~~~-A~~~~~-----------------------~m~~~~--~~~~~~~~~~ll~~~~~~~ 126 (586)
..-.-|++.+.+++-++. |.-+++ ...... -..++.--....+++...|
T Consensus 920 ay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~ag 999 (1630)
T 1xi4_A 920 AYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTAD 999 (1630)
T ss_pred HhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCC
Confidence 112234444433333321 111111 111100 1223333455667777888
Q ss_pred CchHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhC
Q 007871 127 GLVEGTEIHGEVVKMG--FLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEM 204 (586)
Q Consensus 127 ~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 204 (586)
.+.++.+++++..-.+ +..+....+.|+.+..+. +..+..++.++...-+ ...+...+...|.+++|..+|++.
T Consensus 1000 lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 1000 LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 8888888888887432 112345566677777666 5677777776665333 455788889999999999999997
Q ss_pred CCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHh
Q 007871 205 PQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQ 284 (586)
Q Consensus 205 ~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 284 (586)
..+ ....+.++ ...+++++|.++.++. .++.+|..+..++...|++++|.+.|.+. .|...|..++.++.+
T Consensus 1076 ~~~-~~A~~VLi----e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~ 1146 (1630)
T 1xi4_A 1076 DVN-TSAVQVLI----EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANT 1146 (1630)
T ss_pred CCH-HHHHHHHH----HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHH
Confidence 522 22223333 3568999999999977 45788999999999999999999999775 677788889999999
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007871 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364 (586)
Q Consensus 285 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 364 (586)
.|++++|.+.|...++.. +++...+.++.+|++.++++....+. + .++...+..+...|...|++++|..+
T Consensus 1147 lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~ 1217 (1630)
T 1xi4_A 1147 SGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLL 1217 (1630)
T ss_pred cCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999999999999888764 33333445888999999888644443 1 34556677899999999999999999
Q ss_pred HhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh
Q 007871 365 FYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL 444 (586)
Q Consensus 365 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 444 (586)
|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++..|...... +..++
T Consensus 1218 Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~ 1280 (1630)
T 1xi4_A 1218 YNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHA 1280 (1630)
T ss_pred HHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCH
Confidence 9985 58999999999999999999999876 3568899999999999999999886553 33456
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCC-----CCcchHHH
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRN--HQNVTLAEVVVEGLVELKA-----DDCGLYVL 515 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~p-----~~~~~~~~ 515 (586)
..+..++..|.+.|.+++|+.+++.. +..| +...|..+...+.+ -++..++.++|..-....| .++..|..
T Consensus 1281 deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A 1281 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH
Confidence 67789999999999999999999876 3333 45566556655554 4566777777776666555 67888999
Q ss_pred HHHHHHhcCCchHHHHHH
Q 007871 516 LSNIYADAGMWEHALRIR 533 (586)
Q Consensus 516 l~~~~~~~g~~~~A~~~~ 533 (586)
+...|.+.|+|+.|...+
T Consensus 1361 lv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1361 LVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHhcccHHHHHHHH
Confidence 999999999999998543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-18 Score=166.72 Aligned_cols=285 Identities=12% Similarity=0.052 Sum_probs=215.2
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007871 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAIS 315 (586)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~ 315 (586)
.+...+..++..+...|++++|.++|+++.+ .+...+..++.++...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3556667777777777888888888877753 344556667777788888888888888887753 445667777777
Q ss_pred HHhccC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHH
Q 007871 316 ACAQVG-ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 316 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 391 (586)
.+...| ++++|...++.+.+.. +.+...+..+..++...|++++|...++.+.+ .+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 788888 7888888888887765 33556777888888888888888888887652 345667778888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhC-------CCCChHHHHHHHHHHhhcCCHHHHH
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG-------IEPKLEHYSCLVDLLSRAGELEQAL 464 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~ 464 (586)
|...+++..+. .+.+...+..+...+...|++++|...++++.+... .+.+..++..++.+|...|++++|.
T Consensus 178 A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHh-CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 88888888774 244567788888888888888888888888876311 1344678888888888888988888
Q ss_pred HHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH-HhcCCc
Q 007871 465 NIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY-ADAGMW 526 (586)
Q Consensus 465 ~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 526 (586)
..+++. . .+.+...+..+...+...|++++|...++++.+..|+++..+..++.++ ...|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888876 2 2235677888888888888999999999988888888888888888887 455543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-17 Score=169.17 Aligned_cols=287 Identities=13% Similarity=0.030 Sum_probs=220.5
Q ss_pred cCCHHHHHHHHHhCCC-CChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----CCCchHHH
Q 007871 223 KGDISSARILFEHMPI-KDLISWNSMIDGYAK----IGDLVAAQQLFNEMPE-RNVFSWSIMIDGYAQ----HGNPKEAL 292 (586)
Q Consensus 223 ~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~ 292 (586)
.+++++|...|+.... .++..+..+...|.. .+++++|.+.|++..+ .+...+..+...|.. .+++++|.
T Consensus 128 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 4455555555554432 255566666666666 6778888888877654 567777788888877 78899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHH
Q 007871 293 YLFREMLCQGVRPDVISVMGAISACAQ----VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK----CGSLDEARRI 364 (586)
Q Consensus 293 ~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 364 (586)
..|++..+.| +...+..+...+.. .++.++|...++...+.+ +...+..+..+|.. .++.++|.+.
T Consensus 208 ~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~ 281 (490)
T 2xm6_A 208 QWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEW 281 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence 9999888765 45566666666664 778889999998887765 45566677777777 7899999999
Q ss_pred HhccCC-CCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC---CHHHHHHHHHHhH
Q 007871 365 FYSMTK-KNVISYNVMIAGLGMN-----GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG---LATEGYRIFQSMK 435 (586)
Q Consensus 365 ~~~~~~-~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~ 435 (586)
|+...+ .+...+..+...|... +++++|+.+|++..+.| +...+..+...|...| ++++|.++|++..
T Consensus 282 ~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 282 YRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 988764 4667778888888877 89999999999998865 4566777777776656 8899999999998
Q ss_pred HhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC
Q 007871 436 RHCGIEPKLEHYSCLVDLLSR----AGELEQALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 436 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 507 (586)
+. .++..+..+...|.. .+++++|.+.|++.....++..+..+...|.. .+++++|..+|+++.+.+|
T Consensus 359 ~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 359 AK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 82 467788889999988 89999999999987444577888888888887 8999999999999999984
Q ss_pred C---CcchHHHHHHHHHh
Q 007871 508 D---DCGLYVLLSNIYAD 522 (586)
Q Consensus 508 ~---~~~~~~~l~~~~~~ 522 (586)
+ ++.....++.++..
T Consensus 435 ~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 435 NLFGTENRNITEKKLTAK 452 (490)
T ss_dssp CHHHHHHHHHHHTTSCHH
T ss_pred CCcCCHHHHHHHHhcCHh
Confidence 4 77777777766554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.9e-19 Score=172.16 Aligned_cols=277 Identities=11% Similarity=-0.027 Sum_probs=205.8
Q ss_pred hcCCHHHHHH-HHhhCCC--C-----ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChh
Q 007871 253 KIGDLVAAQQ-LFNEMPE--R-----NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALD 324 (586)
Q Consensus 253 ~~g~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~ 324 (586)
-.|++++|.. .|++... | +...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 6665442 1 23456666777777777777777777777653 445666667777777777777
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHhHHHH---------------HHHHHHhc
Q 007871 325 LGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K-NVISYNV---------------MIAGLGMN 386 (586)
Q Consensus 325 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~---------------l~~~~~~~ 386 (586)
+|...++.+.+.. +.+..++..+..+|...|++++|.+.++.+.. | +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 7777777776664 33556677777777777777777777776542 1 1111110 23333488
Q ss_pred CChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHH
Q 007871 387 GFGEEALKCFAQMETEGIPK---DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQA 463 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 463 (586)
|++++|...++++... .| +..++..+...+...|++++|...++++.. ..+.+..++..++.+|...|++++|
T Consensus 195 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999884 44 478899999999999999999999999988 3455788999999999999999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCCchHHH
Q 007871 464 LNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD-----------CGLYVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 464 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~ 530 (586)
...++++ ... .+...+..+...+...|++++|...++++.+..|.+ +.+|..++.+|...|++++|.
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999987 233 467889999999999999999999999999998887 789999999999999999999
Q ss_pred HHHHH
Q 007871 531 RIRKM 535 (586)
Q Consensus 531 ~~~~~ 535 (586)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 88764
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-18 Score=163.64 Aligned_cols=264 Identities=11% Similarity=0.005 Sum_probs=230.3
Q ss_pred CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 007871 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (586)
.+...+..+...+...|++++|..+|+++.+.. +.+...+..++.++...|++++|...++.+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 456677788889999999999999999999874 4455666778888899999999999999998875 44677888899
Q ss_pred HHHHhcC-CHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHH
Q 007871 350 DMYMKCG-SLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT 425 (586)
Q Consensus 350 ~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 425 (586)
..+...| ++++|...|+.+.+ .+...|..+...+...|++++|+..++++.... +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998763 456789999999999999999999999998852 334567777899999999999
Q ss_pred HHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-----------CCCCHHHHHHHHHHHHhcCChHH
Q 007871 426 EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-----------MKPNLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 426 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~~l~~~~~~~~~~~~ 494 (586)
+|...++++.+ ..+.+...+..++..|...|++++|...++++- .+.....+..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999988 456678899999999999999999999998761 03346788899999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 495 AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 495 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
|+..++++.+..|.++.++..++.+|.+.|++++|.+.++++.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999988765
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-15 Score=161.27 Aligned_cols=407 Identities=11% Similarity=0.098 Sum_probs=275.3
Q ss_pred CcchHHHHHHHHhcCCCchhHHHHHHHhHhCCC--CCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHH
Q 007871 76 NTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGL--LVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGL 153 (586)
Q Consensus 76 ~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 153 (586)
++.--....++|...|.+.+|+++|++..-.+. .-+....+.++.+..+. +.....+....... .....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHH
Confidence 334446677888888999999999988874321 12334555566655555 55555555554432 113346
Q ss_pred HHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHH
Q 007871 154 IGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILF 233 (586)
Q Consensus 154 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~ 233 (586)
...+...|.+++|..+|++.... ..+.+.++. ..|++++|.+++++.. +..+|..+..++ ...|++++|+..|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~~-~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAq-l~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDVN-TSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQ-LQKGMVKEAIDSY 1128 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHH-HhCCCHHHHHHHH
Confidence 77778888888888888886522 222222322 6778888888888763 356677777787 8888888888888
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 007871 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE--RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVM 311 (586)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~ 311 (586)
.+. .|...|..++.++.+.|++++|.+.+....+ ++....+.++.+|++.+++++...+ ++ .++...+.
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN---GPNNAHIQ 1199 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHH
Confidence 664 6777788888888888888888888876553 3333344578888888887753333 22 34556677
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHH
Q 007871 312 GAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 391 (586)
.+...|...|++++|..+|..+ ..|..++.+|.+.|++++|.+.+++. .+..+|.....+|...|++..
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHH
Confidence 7888888888888888888874 36788888888888888888888876 456778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc--CCHHHHHHHHHh
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA--GELEQALNIVES 469 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 469 (586)
|...... +..++..+..++..|...|.+++|+.+++.... --+.....|..+..+|.+- ++..++.+.|..
T Consensus 1269 A~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1269 AQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7776553 334556667788888888888888888877655 1233455666666666543 455566665543
Q ss_pred -CCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh------------cCCCCcchHHHHHHHHHhcC
Q 007871 470 -MPMKP------NLALWGTLLLACRNHQNVTLAEVVVEGLVE------------LKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 470 -~~~~p------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~~p~~~~~~~~l~~~~~~~g 524 (586)
+.++| +...|..+...|.+.|+++.|....-+-.. ..+.|+..|+..+..|...+
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 33322 456677777788888888888733322211 14667777777777777666
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-18 Score=162.72 Aligned_cols=285 Identities=13% Similarity=0.095 Sum_probs=126.9
Q ss_pred CCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHH
Q 007871 57 PNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHG 136 (586)
Q Consensus 57 ~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 136 (586)
+. |++++|.+++++++.|+ +|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++
T Consensus 15 ~~-~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HI-GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hc-cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 55 88999999999996664 8999999999999999999999652 577799999999999999999999888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHH
Q 007871 137 EVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMI 216 (586)
Q Consensus 137 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll 216 (586)
..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|..+.
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 77773 45678899999999999999999988864 66679999999999999999999999987 4778888
Q ss_pred HHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHH
Q 007871 217 DGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFR 296 (586)
Q Consensus 217 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 296 (586)
..+ .+.|+++.|.+.++++ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|.+++|..+++
T Consensus 156 ~~L-~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 156 STL-VHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHH-HTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH-HHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 888 8999999999999888 488899999999999999999988777655 344445568888999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcc--CChhHHHHHHHHHHHcCCCC------chhHHHHHHHHHHhcCCHHHHHHHHhc
Q 007871 297 EMLCQGVRPDVISVMGAISACAQV--GALDLGKWIHVFMKRSRITM------DMIVQTALIDMYMKCGSLDEARRIFYS 367 (586)
Q Consensus 297 ~m~~~g~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 367 (586)
...... +.....|+-+..++++- +++.+..+.|. .+.+++| +...|..++..|...++++.|....-.
T Consensus 232 ~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 232 AALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence 887654 45566666666555543 33333333332 1112222 345666777777777777777665443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-16 Score=159.37 Aligned_cols=353 Identities=14% Similarity=0.013 Sum_probs=274.3
Q ss_pred chhHHHHHHHHHHh----cCChhHHHHHhccCCC-CChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHh
Q 007871 146 DVFVVNGLIGMYSK----CGHMGCARSVFEGSEI-KDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYR 220 (586)
Q Consensus 146 ~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 220 (586)
+...+..|...|.. .+++++|...|++..+ .++.++..+...|... .
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g---------------------------~- 89 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNG---------------------------E- 89 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------------------------S-
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC---------------------------C-
Confidence 45555555555655 5666666666654332 2444455555555440 0
Q ss_pred hccCCHHHHHHHHHhCCC-CChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----CCCchH
Q 007871 221 KKKGDISSARILFEHMPI-KDLISWNSMIDGYAK----IGDLVAAQQLFNEMPE-RNVFSWSIMIDGYAQ----HGNPKE 290 (586)
Q Consensus 221 ~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 290 (586)
...++.++|...|++... .++..+..|...|.. .+++++|...|++..+ .+...+..+...|.. .+++++
T Consensus 90 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 90 GVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 004445555555444432 356667777778887 7899999999998765 467788888888887 789999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHH
Q 007871 291 ALYLFREMLCQGVRPDVISVMGAISACAQ----VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK----CGSLDEAR 362 (586)
Q Consensus 291 A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 362 (586)
|+..|++..+.| +...+..+...+.. .++.++|...|+...+.+ +...+..+...|.. .+++++|.
T Consensus 170 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~ 243 (490)
T 2xm6_A 170 AREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSR 243 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999875 56777778888876 899999999999998876 55677778888886 78999999
Q ss_pred HHHhccCC-CCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc-----CCHHHHHHHHH
Q 007871 363 RIFYSMTK-KNVISYNVMIAGLGM----NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS-----GLATEGYRIFQ 432 (586)
Q Consensus 363 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~ 432 (586)
..|+...+ .+...+..+...|.. .+++++|+.+|++..+.| +...+..+...|... +++++|..+++
T Consensus 244 ~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~ 320 (490)
T 2xm6_A 244 VLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT 320 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence 99998764 566778888888887 899999999999998764 456777777777776 89999999999
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 007871 433 SMKRHCGIEPKLEHYSCLVDLLSRAG---ELEQALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 505 (586)
+..+. .+...+..+...|...| ++++|++.|++.....++..+..+...|.. .+++++|..+|+++.+.
T Consensus 321 ~a~~~----~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 321 KSAEQ----GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp HHHHT----TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHhc----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 99883 35567888888888766 889999999988544678888999999888 89999999999999886
Q ss_pred CCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 007871 506 KADDCGLYVLLSNIYAD----AGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 506 ~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 541 (586)
+ ++.++..++.+|.. .+++++|...|++..+.+.
T Consensus 397 ~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 397 G--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp T--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred C--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 4 68899999999998 8999999999999988774
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-18 Score=164.87 Aligned_cols=286 Identities=12% Similarity=0.057 Sum_probs=100.3
Q ss_pred hcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCC
Q 007871 159 KCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPI 238 (586)
Q Consensus 159 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~ 238 (586)
+.|++++|.+.++++..+ .+|..++.++.+.|++++|++.|.+. +|..+|..++..+ ...|++++|+..++...+
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~a-e~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAA-NTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHH
Confidence 445555566666555333 25556666666666666666665442 3444555555555 556666666665544432
Q ss_pred --CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 239 --KDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISA 316 (586)
Q Consensus 239 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~ 316 (586)
+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ ..|..++.+
T Consensus 90 ~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~ 157 (449)
T 1b89_A 90 KARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAST 157 (449)
T ss_dssp -------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHHHHHHH
T ss_pred hCccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHH
Confidence 234556666666666666666665554 255556666666666666666666666654 246666666
Q ss_pred HhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 007871 317 CAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCF 396 (586)
Q Consensus 317 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 396 (586)
+.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++|+.++
T Consensus 158 L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lL 230 (449)
T 1b89_A 158 LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITML 230 (449)
T ss_dssp HHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence 66666666666666655 255666666666666666666655555443 33333445666667777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC------ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP------KLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 397 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
+...... +-....|+.+...|++- ++++..+.++.-.++.+++| +...|..++-.|...++++.|....-+-
T Consensus 231 e~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 231 EAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 6665432 22334555555555443 22222222222222233443 3456666777777777777666655443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-16 Score=160.96 Aligned_cols=404 Identities=12% Similarity=0.054 Sum_probs=253.6
Q ss_pred CcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhhHHHHHHHH
Q 007871 111 DNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGF 188 (586)
Q Consensus 111 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~ 188 (586)
+...|..++.. ...|+++.|..+++.+.+. .+.+...|..++..+.+.|++++|..+|++... |+...|...+...
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~ 89 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV 89 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 45566666663 5567777777777777663 234555677777777777777777777766543 3455555555322
Q ss_pred -HhCCChhHHHH----HHhhCC-----C-CChhHHHHHHHHHhhc---------cCCHHHHHHHHHhCCC-CCh---hHH
Q 007871 189 -VECGEMGKARE----VFDEMP-----Q-KDAISWSIMIDGYRKK---------KGDISSARILFEHMPI-KDL---ISW 244 (586)
Q Consensus 189 -~~~g~~~~A~~----~~~~~~-----~-~~~~~~~~ll~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~ 244 (586)
...|+.+.|.+ +|+... . ++...|...+... .. .|+++.|..+|++... |.. ..|
T Consensus 90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFL-KGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH-HHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH-hcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 23455555443 343322 1 1223333333322 11 3444444444444332 110 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHH------HCC---CCCCH--------
Q 007871 245 NSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML------CQG---VRPDV-------- 307 (586)
Q Consensus 245 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~------~~g---~~~~~-------- 307 (586)
..........|. ..+.. ++. ...+++..|..++.+.. +.. ++|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~---------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ 230 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKK---------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV 230 (530)
T ss_dssp HHHHHHHHHHCH-HHHHH---------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred HHHHHHHHhhch-hHHHH---------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence 111110000000 00000 000 12345666666665532 111 24431
Q ss_pred HHHHHHHHHHhc----cCCh----hHHHHHHHHHHHcCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHH
Q 007871 308 ISVMGAISACAQ----VGAL----DLGKWIHVFMKRSRITMDMIVQTALIDMYMK-------CGSLD-------EARRIF 365 (586)
Q Consensus 308 ~~~~~l~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~ 365 (586)
..|...+..... .++. ..+...|+.+.... +.+...|..++..+.+ .|+++ +|..+|
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~ 309 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 309 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence 334433332221 1232 36777888887763 4567778888887775 68876 899999
Q ss_pred hccCC---C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhC
Q 007871 366 YSMTK---K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD-D-LIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439 (586)
Q Consensus 366 ~~~~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 439 (586)
++..+ | +...|..++..+.+.|++++|..+|+++.+ ..|+ . ..|..++..+.+.|++++|..+|++..+.
T Consensus 310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~-- 385 (530)
T 2ooe_A 310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-- 385 (530)
T ss_dssp HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence 98763 3 577899999999999999999999999998 4564 3 47888888888899999999999999872
Q ss_pred CCCChHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc----h
Q 007871 440 IEPKLEHYSCLVDL-LSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG----L 512 (586)
Q Consensus 440 ~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~ 512 (586)
.+.+...+...+.. +...|+.++|..+|++. ...| ++..|..++..+...|+.++|..+|++++...|.++. +
T Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l 465 (530)
T 2ooe_A 386 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 465 (530)
T ss_dssp TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence 33344444433332 34689999999999977 2334 6788999999999999999999999999998877665 7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 513 YVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 513 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
|...+......|+.+.+..+++++.+.-
T Consensus 466 w~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 466 WARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888889999999999999987643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-17 Score=150.46 Aligned_cols=270 Identities=11% Similarity=0.017 Sum_probs=204.3
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC----hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhH
Q 007871 250 GYAKIGDLVAAQQLFNEMPERN----VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDL 325 (586)
Q Consensus 250 ~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~ 325 (586)
-....|+++.|+..++.....+ ......+..+|...|+++.|+..++. .-+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3455677777777766655422 22344556777777777777766544 135566677777777777777888
Q ss_pred HHHHHHHHHHcCC-CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 007871 326 GKWIHVFMKRSRI-TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGI 404 (586)
Q Consensus 326 a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 404 (586)
|...++.+...+. +.+...+..+..++...|++++|.+.++. ..+...+..++..+.+.|++++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 8888887777654 33455667777889999999999999988 567888999999999999999999999999984
Q ss_pred CCCHHHH---HHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 007871 405 PKDDLIF---LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALW 479 (586)
Q Consensus 405 ~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 479 (586)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|.+.++++ ...| ++.++
T Consensus 160 ~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 4654311 12334445669999999999999993 6778899999999999999999999999987 3344 78889
Q ss_pred HHHHHHHHhcCChHH-HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 480 GTLLLACRNHQNVTL-AEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 480 ~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
..++..+...|+.++ +.++++++.+.+|+++.+.. ...+.+.++++..-|
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 999999999999876 67899999999999996654 456666666665544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-18 Score=165.49 Aligned_cols=261 Identities=11% Similarity=-0.047 Sum_probs=204.4
Q ss_pred ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007871 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALID 350 (586)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (586)
+...+..+...+.+.|++++|...|+++.+.. +.+...+..+..++...|++++|...|+.+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34457777778888888888888888887764 4566777788888888888888888888877764 345667778888
Q ss_pred HHHhcCCHHHHHHHHhccCC--CC-----------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 007871 351 MYMKCGSLDEARRIFYSMTK--KN-----------VISYNVMIAGLGMNGFGEEALKCFAQMETEGIP-KDDLIFLGVLI 416 (586)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~ 416 (586)
+|...|++++|...|+++.+ |+ ...+..+...+...|++++|...++++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 88888888888888877653 11 223345578889999999999999999885211 15788999999
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 494 (586)
.+...|++++|...++++.+ ..+.+..++..++.+|...|++++|.+.++++ ...| +...+..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988 35567889999999999999999999999987 3334 58889999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHH
Q 007871 495 AEVVVEGLVELKAD------------DCGLYVLLSNIYADAGMWEHALRIRKM 535 (586)
Q Consensus 495 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 535 (586)
|...++++.+..|. +..+|..++.++...|+.+.+....++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876 467899999999999999988877654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-17 Score=157.93 Aligned_cols=257 Identities=9% Similarity=-0.071 Sum_probs=177.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 007871 275 WSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354 (586)
Q Consensus 275 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 354 (586)
+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 3334444444555555555555544432 2233444444444455555555555555444442 2233444445555555
Q ss_pred cCCHHHHHHHHhccCC--C-CHhHHHH-------------H-HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 007871 355 CGSLDEARRIFYSMTK--K-NVISYNV-------------M-IA-GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLI 416 (586)
Q Consensus 355 ~g~~~~a~~~~~~~~~--~-~~~~~~~-------------l-~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 416 (586)
.|++++|.+.++.+.+ | +...+.. + .. .+...|++++|...++++.... +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5555555555544431 1 1111111 1 22 3677889999999999998852 446788899999
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHH
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~ 494 (586)
.+...|++++|...++++.+ ..+.+...+..++.+|...|++++|...++++ .. +.+...+..+...+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999988 34567888999999999999999999999887 22 3467888999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 495 AEVVVEGLVELKAD------------DCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 495 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
|...++++.+..|. ++..+..++.++.+.|++++|..++++.
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999998 7889999999999999999999988654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-15 Score=153.55 Aligned_cols=408 Identities=12% Similarity=0.081 Sum_probs=288.7
Q ss_pred CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHH
Q 007871 73 YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNG 152 (586)
Q Consensus 73 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 152 (586)
.+-+...|..++.. .+.|++++|..+|+++.+.. +-+...|...+..+.+.|+++.|..+|+..++.. |++..|..
T Consensus 9 ~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 9 NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 34577789999984 78899999999999999862 3356678899999999999999999999999854 67778877
Q ss_pred HHHHH-HhcCChhHHHH----HhccCC------CCChhhHHHHHHHHHh---------CCChhHHHHHHhhCC-CCCh--
Q 007871 153 LIGMY-SKCGHMGCARS----VFEGSE------IKDLVSWNLVLRGFVE---------CGEMGKAREVFDEMP-QKDA-- 209 (586)
Q Consensus 153 li~~~-~~~g~~~~a~~----~~~~~~------~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~-~~~~-- 209 (586)
++... ...|+.+.|.+ +|++.. ..+...|...+..... .|+++.|..+|++.. .|..
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 77533 45677777665 555431 2356778888776655 689999999999987 4432
Q ss_pred -hHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-------CC------CCC----
Q 007871 210 -ISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNE-------MP------ERN---- 271 (586)
Q Consensus 210 -~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~------~~~---- 271 (586)
..|....... ...|. ..+..++.. +.+++..|..++.. +. .|+
T Consensus 165 ~~~~~~~~~~e-~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 165 EQLWRDYNKYE-EGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHH-HHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHHH-Hhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 2222211111 11111 111111111 12334444433332 11 122
Q ss_pred ----hhHHHHHHHHHHhC----CCc----hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCChh-------H
Q 007871 272 ----VFSWSIMIDGYAQH----GNP----KEALYLFREMLCQGVRPDVISVMGAISACAQ-------VGALD-------L 325 (586)
Q Consensus 272 ----~~~~~~l~~~~~~~----~~~----~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~-------~~~~~-------~ 325 (586)
...|...+...... ++. +++..+|++++... +-+...|......+.. .|+++ +
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 24555555433322 233 37788899888762 4567777777777664 68887 8
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CH-hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007871 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K-NV-ISYNVMIAGLGMNGFGEEALKCFAQMET 401 (586)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 401 (586)
|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|..+|++..+
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 899999988633345678888999999999999999999998763 4 33 4788888888999999999999999987
Q ss_pred CCCCCC-HHHHHHHHHH-hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-
Q 007871 402 EGIPKD-DLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM----PMKP- 474 (586)
Q Consensus 402 ~g~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p- 474 (586)
. .|+ ...+...... +...|++++|..+|+...+. .+.+...|..++..+.+.|+.++|..+|++. +..|
T Consensus 385 ~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 385 D--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp C--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred c--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 4 333 3333332222 33589999999999999884 3557889999999999999999999999987 2233
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 475 -NLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 475 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
....|...+......|+.+.+..+++++.+..|.
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2458888888888999999999999999998874
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-17 Score=157.35 Aligned_cols=255 Identities=14% Similarity=0.074 Sum_probs=148.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007871 245 NSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321 (586)
Q Consensus 245 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 321 (586)
..+...+.+.|++++|...|+++.+ .+..+|..+..++...|++++|...|+++.+.. +.+..++..+..++...|
T Consensus 68 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 68 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 146 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 3333344444444444444443321 223344444444444444444444444444432 223344444444444444
Q ss_pred ChhHHHHHHHHHHHcCCCCchhH---------------HHHHHHHHHhcCCHHHHHHHHhccCC--C---CHhHHHHHHH
Q 007871 322 ALDLGKWIHVFMKRSRITMDMIV---------------QTALIDMYMKCGSLDEARRIFYSMTK--K---NVISYNVMIA 381 (586)
Q Consensus 322 ~~~~a~~~~~~~~~~~~~~~~~~---------------~~~l~~~~~~~g~~~~a~~~~~~~~~--~---~~~~~~~l~~ 381 (586)
++++|...++.+.+......... +..+...+ ..|++++|...|+.+.+ | +...+..+..
T Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~ 225 (368)
T 1fch_A 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV 225 (368)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHH
Confidence 44444444444444321111110 01122233 66777777777776652 2 4667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH
Q 007871 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461 (586)
Q Consensus 382 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 461 (586)
.|...|++++|+..++++... .+.+...+..+...+...|++++|...++++.+ ..+.+...+..++.+|.+.|+++
T Consensus 226 ~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~ 302 (368)
T 1fch_A 226 LFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALE--LQPGYIRSRYNLGISCINLGAHR 302 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHH
Confidence 788888888888888877764 233456777777788888888888888888777 23456677778888888888888
Q ss_pred HHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 462 QALNIVESM-PMKP------------NLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 462 ~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
+|...++++ ...| ....|..+..++...|++++|..++++.++
T Consensus 303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 888887766 1111 257778888888888888888887776554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-16 Score=148.23 Aligned_cols=246 Identities=10% Similarity=-0.011 Sum_probs=201.5
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 007871 279 IDGYAQHGNPKEALYLFREMLCQGVRPDV--ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356 (586)
Q Consensus 279 ~~~~~~~~~~~~A~~~~~~m~~~g~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (586)
+.-....|+++.|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+...+..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 34556789999999998876443 4443 3556678899999999999876644 23567778888999999999
Q ss_pred CHHHHHHHHhccC----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 007871 357 SLDEARRIFYSMT----KK-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431 (586)
Q Consensus 357 ~~~~a~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (586)
+.++|.+.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 24 566777888999999999999999987 467788999999999999999999999
Q ss_pred HHhHHhhCCCCChH-H--HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 432 QSMKRHCGIEPKLE-H--YSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 432 ~~~~~~~~~~~~~~-~--~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
+.+.+. .|+.. . ...++..+...|++++|..+|+++ ..++++..++.+..++...|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999883 24432 1 122334455669999999999988 234578899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchH-HHHHHHHHHhC
Q 007871 507 ADDCGLYVLLSNIYADAGMWEH-ALRIRKMMRKR 539 (586)
Q Consensus 507 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 539 (586)
|+++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987 57899988764
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-15 Score=154.36 Aligned_cols=357 Identities=10% Similarity=-0.067 Sum_probs=208.0
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHhhCC-----------CC-ChhHHHHHHHHHhhccCCHHHHHHHHHhCC-------
Q 007871 177 DLVSWNLVLRGFVECGEMGKAREVFDEMP-----------QK-DAISWSIMIDGYRKKKGDISSARILFEHMP------- 237 (586)
Q Consensus 177 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~------- 237 (586)
....||.+...+...|++++|++.|++.. .| ...+|..+...+ ...|++++|...+++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y-~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY-YHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhHhcc
Confidence 35678999999999999999999987754 12 234566666667 77888888877766543
Q ss_pred C----CChhHHHHHHHHHHhc--CCHHHHHHHHhhCCC--C-ChhHHHHHHHH---HHhCCCchHHHHHHHHHHHCCCCC
Q 007871 238 I----KDLISWNSMIDGYAKI--GDLVAAQQLFNEMPE--R-NVFSWSIMIDG---YAQHGNPKEALYLFREMLCQGVRP 305 (586)
Q Consensus 238 ~----~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~A~~~~~~m~~~g~~~ 305 (586)
. ....++..+..++... +++++|...|++..+ | ++..+..+..+ +...++.++|++.+++..+.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 1 1334555555555443 457788888877653 3 34444444433 344566777777777777653 33
Q ss_pred CHHHHHHHHHHHh----ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHH
Q 007871 306 DVISVMGAISACA----QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNV 378 (586)
Q Consensus 306 ~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ 378 (586)
+...+..+...+. ..++.++|...++...... +.+..++..+...|...|++++|...+++..+ .+..++..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 4445544444433 3356677777777776664 34556677777778888888888887776652 34556666
Q ss_pred HHHHHHhc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhC
Q 007871 379 MIAGLGMN-------------------GFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCG 439 (586)
Q Consensus 379 l~~~~~~~-------------------~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 439 (586)
+...|... +.++.|...+++..... +.+..++..+...+...|++++|...|++..+. .
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~ 364 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-E 364 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-C
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-C
Confidence 66665432 22455666666666531 222345666777777777777777777777662 2
Q ss_pred CCCCh--HHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 440 IEPKL--EHYSCLVDL-LSRAGELEQALNIVESM-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 440 ~~~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
..+.. ..+..+... +...|++++|++.+++. ...|+...... ....+..++++.++.+|.++.++..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~ 435 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALHV 435 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 22211 122233322 33567777777777665 34444322221 2234456667777788999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHhCCCccCCCe
Q 007871 516 LSNIYADAGMWEHALRIRKMMRKRKIKKETGR 547 (586)
Q Consensus 516 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 547 (586)
++.+|...|++++|++.|++..+.+.......
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~ 467 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSAS 467 (472)
T ss_dssp HHHHHHHHHHCC--------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHh
Confidence 99999999999999999999988765543333
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-16 Score=153.68 Aligned_cols=232 Identities=10% Similarity=-0.011 Sum_probs=195.2
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHH
Q 007871 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAG 382 (586)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~ 382 (586)
+...+..+...+.+.|++++|...|+.+.+.. +.+..++..+..+|...|++++|...|+++. ..+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999876 4567889999999999999999999999876 3467899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDD-----------LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLV 451 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 451 (586)
|...|++++|+..++++.+. .|+. ..+..+...+...|++++|..+++++.+.....++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999873 3432 2233457788999999999999999998422212688999999
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 007871 452 DLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 529 (586)
.+|...|++++|.+.++++ . .+.+...|..+..+|...|++++|+..++++++..|.++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 2 2346889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 007871 530 LRIRKMMRKRK 540 (586)
Q Consensus 530 ~~~~~~m~~~~ 540 (586)
...++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999997643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=151.16 Aligned_cols=261 Identities=10% Similarity=-0.006 Sum_probs=186.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 007871 242 ISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACA 318 (586)
Q Consensus 242 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~ 318 (586)
..+..+...+...|++++|...|+++.+ .+..++..+..++...|++++|...++++.+.. +.+..++..+...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 3455666667777777777777776643 345666677777777777777777777777653 445666777777777
Q ss_pred ccCChhHHHHHHHHHHHcCCCCchhHHHHH--------------HH-HHHhcCCHHHHHHHHhccC---CCCHhHHHHHH
Q 007871 319 QVGALDLGKWIHVFMKRSRITMDMIVQTAL--------------ID-MYMKCGSLDEARRIFYSMT---KKNVISYNVMI 380 (586)
Q Consensus 319 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~ 380 (586)
..|++++|...++.+.+.... +...+..+ .. .+...|++++|...++++. ..+...+..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 777777777777777665422 22222222 22 3667778888888887765 24667788888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (586)
..+...|++++|...++++... .+.+...+..+...+...|++++|...++++.+ ..+.+...+..++.+|...|++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccH
Confidence 8888888999999888888774 234567788888888888999999999988877 2455677888888889999999
Q ss_pred HHHHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 461 EQALNIVESM-PMKP-------------NLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 461 ~~A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
++|.+.++++ ...| +...+..+..++...|++++|..+++++++..|
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9998888776 1222 366778888888899999999888887666433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-15 Score=151.36 Aligned_cols=379 Identities=8% Similarity=-0.073 Sum_probs=202.2
Q ss_pred CCcccHHHHHHHHhccCCchHHHHHHHHHHHh-----C--CCC-chhHHHHHHHHHHhcCChhHHHHHhccCC-------
Q 007871 110 VDNYTYPFVLKACGVLMGLVEGTEIHGEVVKM-----G--FLC-DVFVVNGLIGMYSKCGHMGCARSVFEGSE------- 174 (586)
Q Consensus 110 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~------- 174 (586)
.....|+.+..++...|++++|.+.+++..+. + ..| ...+|+.+..+|...|++++|...+++..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34557888888888899999999988887653 1 122 34567788888888888888887775432
Q ss_pred C----CChhhHHHHHHHHHhC--CChhHHHHHHhhCC--CCChhH-HHHHHHHH--hhccCCHHHHHHHHHhCC---CCC
Q 007871 175 I----KDLVSWNLVLRGFVEC--GEMGKAREVFDEMP--QKDAIS-WSIMIDGY--RKKKGDISSARILFEHMP---IKD 240 (586)
Q Consensus 175 ~----~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~--~~~~~~-~~~ll~~~--~~~~g~~~~a~~~~~~~~---~~~ 240 (586)
. ....++.....++... +++++|+..|++.. .|+... +..+...+ ....++.++|++.+++.. +.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 1 1234555555555443 45777888877766 444332 22222221 134455566666655443 334
Q ss_pred hhHHHHHHHHHHh----cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007871 241 LISWNSMIDGYAK----IGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGA 313 (586)
Q Consensus 241 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 313 (586)
..++..+...+.. .|++++|.+.+++... .+..++..+...+...|++++|...+++..+.. +-+..++..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 4555544444433 3445566666655432 344556666666666666666666666666542 2233444444
Q ss_pred HHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChH
Q 007871 314 ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGE 390 (586)
Q Consensus 314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~ 390 (586)
..++...+... .... ...........+.++.|...++... ..+...+..+...|...|+++
T Consensus 288 g~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 33332111000 0000 0000000111223566777776654 345667888999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007871 391 EALKCFAQMETEGIPKDDL--IFLGVLI-ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467 (586)
Q Consensus 391 ~A~~~~~~m~~~g~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (586)
+|+..|++..+....|... .+..+.. .....|++++|+..|++..+ +.|+........ ..+..++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHH
Confidence 9999999998853332221 2233332 24578999999999999877 344433222222 2233333
Q ss_pred HhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 468 ESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 468 ~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
++. . .+.++.+|..+...+...|++++|++.|+++++.+|.+|.+...++
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 332 1 2346778999999999999999999999999999999887776554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-15 Score=137.30 Aligned_cols=216 Identities=9% Similarity=-0.041 Sum_probs=155.5
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C----C----HhHHHHHH
Q 007871 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K----N----VISYNVMI 380 (586)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~----~~~~~~l~ 380 (586)
..+...+...|++++|...++.+.+.. .+...+..+..+|...|++++|...++...+ | + ...+..+.
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 333344444444444444444444443 3344444455555555555555555544431 1 1 45677777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (586)
..+...|++++|...+++... ..|+.. .+...|++++|...++.+.. ..+.+...+..++..+...|++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 888888888888888888877 455533 35556788899999988877 3445677888889999999999
Q ss_pred HHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 461 EQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 461 ~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
++|...++++ . .+.+...+..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|...+++..+
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999877 2 2346788888888899999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 007871 539 R 539 (586)
Q Consensus 539 ~ 539 (586)
.
T Consensus 236 ~ 236 (258)
T 3uq3_A 236 K 236 (258)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=134.87 Aligned_cols=194 Identities=13% Similarity=-0.024 Sum_probs=156.0
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 007871 339 TMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGV 414 (586)
Q Consensus 339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l 414 (586)
+++...+..+...+...|++++|...|+...+ .+...+..+...+.+.|++++|+..+++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45666777888888899999999999987653 46678888899999999999999999999884 45 45788888
Q ss_pred HHHhhcc-----------CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 007871 415 LIACSHS-----------GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGT 481 (586)
Q Consensus 415 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 481 (586)
..++... |++++|...+++..+ ..|.+...+..++.+|...|++++|+..|++. .. .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence 8888888 999999999999988 34557888999999999999999999999887 23 78889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
+..++...|++++|+..++++++.+|+++.++..++.++...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988753
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-15 Score=137.93 Aligned_cols=234 Identities=10% Similarity=-0.051 Sum_probs=184.6
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCC--c----hhHHH
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITM--D----MIVQT 346 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~ 346 (586)
..|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...++.+.+..... + ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777778888888888888877765 666777777778888888888888887776653211 1 46777
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCC
Q 007871 347 ALIDMYMKCGSLDEARRIFYSMTK--KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD-DLIFLGVLIACSHSGL 423 (586)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 423 (586)
.+..+|...|++++|...|+++.+ |+. ..+...|++++|...++++... .|+ ...+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcC
Confidence 888888888888888888887763 342 3466678889999999998883 444 4678888888999999
Q ss_pred HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 007871 424 ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEG 501 (586)
Q Consensus 424 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 501 (586)
+++|...++++.+ ..+.+..++..++.+|...|++++|...++++ .. +.+...+..+...+...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999988 34567888999999999999999999999887 22 34678888899999999999999999999
Q ss_pred HHhcC------CCCcchHHHHHHH
Q 007871 502 LVELK------ADDCGLYVLLSNI 519 (586)
Q Consensus 502 ~~~~~------p~~~~~~~~l~~~ 519 (586)
+.+.. |.+..++..+..+
T Consensus 233 a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 233 ARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHhChhhcCCCchHHHHHHHHHh
Confidence 99988 8877777766543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-14 Score=133.60 Aligned_cols=244 Identities=10% Similarity=-0.055 Sum_probs=142.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHh
Q 007871 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD--MIVQTALIDMYMK 354 (586)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 354 (586)
.....+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.+..++ ...+..+..+|..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 34445555555566666655555542 22233445555555555666666665555555221111 1235556666666
Q ss_pred cCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 007871 355 CGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431 (586)
Q Consensus 355 ~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (586)
.|++++|.+.|+... ..+...+..+...|...|++++|+..+++..+. .+.+...+..+...+...+++++|...+
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666554 234456666666666666666666666666553 2223445555552333344777777777
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCChHHHHHH
Q 007871 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGE---LEQALNIVESM----PMKPN------LALWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~~~~~~a~~~ 498 (586)
+++.+ ..+.+...+..++.++...|+ +++|...++++ ...|+ ...+..+...|...|++++|...
T Consensus 166 ~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77766 233445666666777766666 55566665554 11132 24667778888899999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 499 VEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 499 ~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
++++.+.+|+++.++..+..+....+
T Consensus 244 ~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 244 WKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHhcCccHHHHHHHhhhhhcccc
Confidence 99999999999998888877665544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-14 Score=133.43 Aligned_cols=241 Identities=9% Similarity=-0.087 Sum_probs=185.9
Q ss_pred hCCCchHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH
Q 007871 284 QHGNPKEALYLFREMLCQGVR---PDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE 360 (586)
Q Consensus 284 ~~~~~~~A~~~~~~m~~~g~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 360 (586)
..|++++|+..++++.+.... .+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456788888888888875321 234567777778888888888888888887775 3466778888888889999999
Q ss_pred HHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHh
Q 007871 361 ARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRH 437 (586)
Q Consensus 361 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 437 (586)
|...|+++.+ .+...+..+...|...|++++|...++++.+ ..|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998887763 4677888999999999999999999999988 4555554455555567779999999999888873
Q ss_pred hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 438 CGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-MKPN-----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
.+++...+. ++..+...++.++|.+.+++.- ..|. ...+..+...+...|++++|...++++.+.+|.+..
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 445555444 7777888889999999998773 2232 577888888999999999999999999999988765
Q ss_pred hHHHHHHHHHhcCCchHHHHHH
Q 007871 512 LYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
.+ +.++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 44 66788889999988776
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-15 Score=146.75 Aligned_cols=374 Identities=8% Similarity=-0.078 Sum_probs=198.9
Q ss_pred HHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---hHHHHHhccCCCCChhhHHHHHHHHHhCC-
Q 007871 117 FVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHM---GCARSVFEGSEIKDLVSWNLVLRGFVECG- 192 (586)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~g- 192 (586)
.+...+.+.|++++|.++|++..+.| +...+..|...|...|+. ++|...|++..+.++.++..+...+...|
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35566678899999999999998876 344555566666777777 88888888877667777777777565555
Q ss_pred ----ChhHHHHHHhhCCCC-ChhHHHHHHHHHhhccCCHH---HHHHHHHhCC-CCChhHHHHHHHHHHhcCC----HHH
Q 007871 193 ----EMGKAREVFDEMPQK-DAISWSIMIDGYRKKKGDIS---SARILFEHMP-IKDLISWNSMIDGYAKIGD----LVA 259 (586)
Q Consensus 193 ----~~~~A~~~~~~~~~~-~~~~~~~ll~~~~~~~g~~~---~a~~~~~~~~-~~~~~~~~~l~~~~~~~g~----~~~ 259 (586)
++++|+..|++...+ +...+..+...+ ...+..+ .+.+.+.... ..++.....+...|...+. .+.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y-~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLY-LQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHH-HHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence 667777777766522 222333333333 2222211 1222222211 1133334444444444432 222
Q ss_pred HHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---ChhHHHHHHHHHHHc
Q 007871 260 AQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG---ALDLGKWIHVFMKRS 336 (586)
Q Consensus 260 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 336 (586)
+..++......++. .+..+...+...| +.++|...|+...+.
T Consensus 164 a~~~~~~a~~~~~~-----------------------------------a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~ 208 (452)
T 3e4b_A 164 VERICKAALNTTDI-----------------------------------CYVELATVYQKKQQPEQQAELLKQMEAGVSR 208 (452)
T ss_dssp HHHHHHHHTTTCTT-----------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHH-----------------------------------HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence 22233333333333 4444444444455 555555555555555
Q ss_pred CCCCchhHHHHHHHHHHhc----CCHHHHHHHHhccCCCCHhHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHH
Q 007871 337 RITMDMIVQTALIDMYMKC----GSLDEARRIFYSMTKKNVISYNVMIAG-L--GMNGFGEEALKCFAQMETEGIPKDDL 409 (586)
Q Consensus 337 ~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~ 409 (586)
| +++...+..+..+|... +++++|...|+.....++..+..+... + ...+++++|+.+|++..+.| +..
T Consensus 209 g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~ 284 (452)
T 3e4b_A 209 G-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPR 284 (452)
T ss_dssp T-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHH
T ss_pred C-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 4 22333333444444333 566667776666553345556666555 3 45778888888888887765 556
Q ss_pred HHHHHHHHhhccC-----CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHH
Q 007871 410 IFLGVLIACSHSG-----LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR----AGELEQALNIVESMPMKPNLALWG 480 (586)
Q Consensus 410 ~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~ 480 (586)
.+..+...|. .| ++++|..+|++.. +-+...+..|...|.. ..++++|...|++.....++....
T Consensus 285 A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~ 358 (452)
T 3e4b_A 285 AELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADF 358 (452)
T ss_dssp HHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHH
T ss_pred HHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHH
Confidence 6666666665 44 8888888888764 3466777777777765 348888888888774344455555
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 481 TLLLACRN----HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 481 ~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+...|.. ..|..+|..+|+++.+.++.........+......++..+|..+.++..+.
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 66666553 458889999999988877554433333332233445666777777776543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.6e-16 Score=158.97 Aligned_cols=125 Identities=14% Similarity=0.166 Sum_probs=111.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHH
Q 007871 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMP-------ERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMG 312 (586)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 312 (586)
-..+|+++|++|++.|++++|.++|++|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34689999999999999999999997753 48999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-hHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 007871 313 AISACAQVGAL-DLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRI 364 (586)
Q Consensus 313 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 364 (586)
+|.++++.|+. +.|..++++|.+.|+.||..+|++++....+.+-++.+.++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 99999999985 78999999999999999999999998877665444443333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-13 Score=123.57 Aligned_cols=225 Identities=9% Similarity=-0.121 Sum_probs=127.7
Q ss_pred ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHcCCCCchhHHH
Q 007871 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ----VGALDLGKWIHVFMKRSRITMDMIVQT 346 (586)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (586)
+..++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...|+...+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~--- 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN--- 75 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH---
Confidence 4455566666666666666666666666652 233444455555555 555555555555555443 333
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc--
Q 007871 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGM----NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH-- 420 (586)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-- 420 (586)
.+..+...|.. .+++++|+..|++..+.+ +...+..+...|..
T Consensus 76 ----------------------------a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 76 ----------------------------GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp ----------------------------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred ----------------------------HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 44444444444 555555555555555543 44455555555555
Q ss_pred --cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 007871 421 --SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR----AGELEQALNIVESMPMKPNLALWGTLLLACRN----HQ 490 (586)
Q Consensus 421 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 490 (586)
.+++++|...+++..+. + +...+..+...|.. .+++++|.+.+++.....+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 56666666666665551 2 34455555555555 56666666666554222344555555556666 66
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHhCCC
Q 007871 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYAD----AGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 491 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 541 (586)
++++|+.+++++.+.+| +..+..++.+|.. .|++++|...+++..+.|.
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 66666666666666544 5556666666666 6666666666666665543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-16 Score=159.78 Aligned_cols=130 Identities=12% Similarity=0.061 Sum_probs=117.2
Q ss_pred ChhhHhHHHHHhccCCCCChHHHHHHHhcc-------CCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccH
Q 007871 43 EPFTLSQLLMSLTSPNTLNMDQAERLFNQI-------YQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTY 115 (586)
Q Consensus 43 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 115 (586)
-..+|+.+|. .|++. |++++|.++|++| ..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 126 ~~~TynaLId-glcK~-G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 126 QQQRLLAFFK-CCLLT-DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHH-HHHHH-TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHH-HHHhC-CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3457999999 99999 9999999999775 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCc-hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC
Q 007871 116 PFVLKACGVLMGL-VEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE 174 (586)
Q Consensus 116 ~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 174 (586)
+++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++..+.+.+-++.+.++.....
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 9999999999985 7899999999999999999999999988888776666666654443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-13 Score=132.84 Aligned_cols=246 Identities=10% Similarity=0.006 Sum_probs=186.6
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hhHHHHHHHHHHHcCCCCchhHHHHHHH
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA-LDLGKWIHVFMKRSRITMDMIVQTALID 350 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 350 (586)
...|..+...+...|++++|+..++++++.. +-+...|..+..++...|+ +++|...++.+++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3556677777777888888888888877753 4456667777777777775 888888888777765 335667777777
Q ss_pred HHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc-cCCHH
Q 007871 351 MYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSH-SGLAT 425 (586)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~-~g~~~ 425 (586)
++...|++++|+..|+++. ..+...|..+..++...|++++|+..++++++. .| +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 8888888888888887766 346678888888888889999999999988884 44 55778888888877 56556
Q ss_pred HH-----HHHHHHhHHhhCCCCChHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 007871 426 EG-----YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG--ELEQALNIVESMPMKP-NLALWGTLLLACRNHQ------- 490 (586)
Q Consensus 426 ~A-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~------- 490 (586)
+| +..+++... -.+.+...|..+..++...| ++++|++.+.++...| +...+..++..|...|
T Consensus 253 eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 477888877 34456778888888888888 6888888888774444 5667777877777763
Q ss_pred -C-hHHHHHHHHHH-HhcCCCCcchHHHHHHHHHhc
Q 007871 491 -N-VTLAEVVVEGL-VELKADDCGLYVLLSNIYADA 523 (586)
Q Consensus 491 -~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 523 (586)
+ +++|+.+++++ .+.+|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58999999999 899999999999888776543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=9.7e-13 Score=122.06 Aligned_cols=232 Identities=10% Similarity=-0.119 Sum_probs=168.0
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 007871 239 KDLISWNSMIDGYAKIGDLVAAQQLFNEMPER-NVFSWSIMIDGYAQ----HGNPKEALYLFREMLCQGVRPDVISVMGA 313 (586)
Q Consensus 239 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 313 (586)
.++.++..+...+...|++++|...|++..++ +..++..+...+.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 46788899999999999999999999988764 56788889999999 999999999999999876 66777778
Q ss_pred HHHHhc----cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCCh
Q 007871 314 ISACAQ----VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFG 389 (586)
Q Consensus 314 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 389 (586)
...+.. .+++++|...++...+.+ +...+..+...|... ....+++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~---------------------------~~~~~~~ 130 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG---------------------------KVVTRDF 130 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC---------------------------SSSCCCH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC---------------------------CCcccCH
Confidence 888877 888888888888776654 334444444444430 0005566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh----cCCHH
Q 007871 390 EEALKCFAQMETEGIPKDDLIFLGVLIACSH----SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR----AGELE 461 (586)
Q Consensus 390 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 461 (586)
++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+. .+...+..+..+|.. .++++
T Consensus 131 ~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~ 203 (273)
T 1ouv_A 131 KKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFK 203 (273)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 66666666666543 44555556666655 67777777777777662 245666677777777 77888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCc
Q 007871 462 QALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 462 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
+|.+.+++.....+...+..+...+.. .+++++|..+++++.+.+|+++
T Consensus 204 ~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 204 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 888877766322336666777777777 8888888888888888877654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-13 Score=137.67 Aligned_cols=301 Identities=10% Similarity=-0.029 Sum_probs=203.3
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhhCCC-CChhHHHHHHHHHHhCCCch---HHHHHHHH
Q 007871 227 SSARILFEHMPIKDLISWNSMIDGYAKIG-----DLVAAQQLFNEMPE-RNVFSWSIMIDGYAQHGNPK---EALYLFRE 297 (586)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~---~A~~~~~~ 297 (586)
++|...|+.....++..+..+...+...+ +.++|...|++..+ .+...+..|...|...+... .+...+..
T Consensus 55 ~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~ 134 (452)
T 3e4b_A 55 KQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQ 134 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 55555555554444555555555444444 56677777766654 23446666777776655433 45555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhccCC---C
Q 007871 298 MLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG---SLDEARRIFYSMTK---K 371 (586)
Q Consensus 298 m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~---~ 371 (586)
....|. ......+...+...+.++.+......+.+.-...++..+..+..+|...| +.++|.+.|+...+ +
T Consensus 135 a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~ 211 (452)
T 3e4b_A 135 WQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV 211 (452)
T ss_dssp HHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH
Confidence 555553 33455566667777755555544333333322334447888999999999 89999999987763 3
Q ss_pred CHhHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-h--hccCCHHHHHHHHHHhHHhhCCCCCh
Q 007871 372 NVISYNVMIAGLGMN----GFGEEALKCFAQMETEGIPKDDLIFLGVLIA-C--SHSGLATEGYRIFQSMKRHCGIEPKL 444 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~ 444 (586)
+...+..+...|... +++++|+.+|++.. .| +...+..+... + ...+++++|..+|++..+. | +.
T Consensus 212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~ 283 (452)
T 3e4b_A 212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QP 283 (452)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CH
T ss_pred HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CH
Confidence 444446777777654 79999999999987 33 34555566655 3 5689999999999999873 4 67
Q ss_pred HHHHHHHHHHhhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 445 EHYSCLVDLLSRAG-----ELEQALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 445 ~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
..+..|..+|. .| ++++|.+.|++.. ..++.....+...|.. ..++++|..+|+++.+. .++.....
T Consensus 284 ~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~ 359 (452)
T 3e4b_A 284 RAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFA 359 (452)
T ss_dssp HHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHH
T ss_pred HHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHH
Confidence 78888888887 55 9999999999998 6688888888877766 44999999999998874 56778899
Q ss_pred HHHHHHh----cCCchHHHHHHHHHHhCCCc
Q 007871 516 LSNIYAD----AGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 516 l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 542 (586)
|+.+|.. ..+.++|..+|++..+.|..
T Consensus 360 Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 360 IAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 9998875 45899999999999888764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-13 Score=122.67 Aligned_cols=193 Identities=12% Similarity=-0.013 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (586)
...+..+...+.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...++...+.. +.+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3444455555555555555555555555442 3344445555555555555555555555555543 2234444455555
Q ss_pred HHhc-----------CCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 352 YMKC-----------GSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417 (586)
Q Consensus 352 ~~~~-----------g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 417 (586)
+... |++++|...|++..+ .+...+..+...+...|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 5554 566666666655441 244555566666666666666666666666644 555566666666
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
+...|++++|...++++.+ ..|.+...+..++.++...|++++|.+.+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666665 23445556666666666666666666666554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.5e-14 Score=127.43 Aligned_cols=141 Identities=12% Similarity=0.015 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+ ..+.+...+..++.+
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~ 168 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMC 168 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 334444444444445555555554444421 22334444444455555555555555555544 122334444455555
Q ss_pred HhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 454 LSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
+...|++++|...++++ . .+.+...+..+...+...|++++|...++++.+..|+++..+..++
T Consensus 169 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 169 LANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 55555555555555443 1 1123444445555555555555555555555555555555444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-14 Score=127.50 Aligned_cols=196 Identities=13% Similarity=0.056 Sum_probs=155.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417 (586)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 417 (586)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++... .+.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL-DSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCcchHHHHHHHHH
Confidence 445666777778888888888888887753 46678888899999999999999999999885 24466888899999
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLA 495 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a 495 (586)
+...|++++|...++++.+ ..+.+...+..++.++...|++++|...++++ . .+.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999988 34567888999999999999999999999987 2 234678888899999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 496 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+..++++.+..|.++.++..++.+|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999774
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8e-13 Score=120.96 Aligned_cols=167 Identities=13% Similarity=-0.007 Sum_probs=82.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhc
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD-DLIFLGVLIACSH 420 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~ 420 (586)
+..+..+|...|++++|.+.++++. ..+...+..+...|...|++++|..+++++...+..|+ ...+..+...+..
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 153 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH
Confidence 3333334444444444444443332 12334444445555555555555555555544222332 2345555555555
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHH
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~ 498 (586)
.|++++|...++++.+. .+.+...+..++.+|...|++++|...++++ ... .+...+..+...+...|++++|...
T Consensus 154 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 231 (252)
T 2ho1_A 154 MKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASY 231 (252)
T ss_dssp TTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHH
Confidence 56666666666555552 2334455555555555555555555555544 112 2344445555555555666666666
Q ss_pred HHHHHhcCCCCcchH
Q 007871 499 VEGLVELKADDCGLY 513 (586)
Q Consensus 499 ~~~~~~~~p~~~~~~ 513 (586)
++++.+..|.++...
T Consensus 232 ~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 232 GLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHCTTSHHHH
T ss_pred HHHHHHHCCCCHHHH
Confidence 666655555555433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-13 Score=124.08 Aligned_cols=197 Identities=8% Similarity=-0.050 Sum_probs=169.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 418 (586)
...+..+...+...|++++|...|+++. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3456667777888888888888887765 3467788999999999999999999999998852 34677889999999
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHH
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEP-KLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLA 495 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a 495 (586)
...|++++|..+++++.. .+..| +...+..++.+|...|++++|.+.++++ .. +.+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999877 23444 5678889999999999999999999887 22 33678888999999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 496 EVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 496 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
...++++.+..|.++..+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999997753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-13 Score=120.23 Aligned_cols=195 Identities=13% Similarity=-0.001 Sum_probs=130.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 418 (586)
...+..+...+...|++++|.+.++.+. ..+...+..+...+...|++++|...++++... .+.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-KPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCChHHHHHHHHHH
Confidence 3445555566666666666666665544 234556666666677777777777777776663 233456666677777
Q ss_pred hcc-CCHHHHHHHHHHhHHhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007871 419 SHS-GLATEGYRIFQSMKRHCGIEP-KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 419 ~~~-g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 494 (586)
... |++++|...++++.+ .+..| +...+..++.++...|++++|...++++ ...| +...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 777 777777777777766 22223 3566667777777777777777777665 2223 46667777777777777777
Q ss_pred HHHHHHHHHhcCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 495 AEVVVEGLVELKA-DDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 495 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
|...++++.+..| .++..+..++..+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777777777 7777777777777777777777777777654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-13 Score=124.94 Aligned_cols=227 Identities=10% Similarity=-0.053 Sum_probs=187.1
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----HhHHHHHHHH
Q 007871 309 SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--KN----VISYNVMIAG 382 (586)
Q Consensus 309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~ 382 (586)
.+......+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...++.+.+ ++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 44556778899999999999999998875 33555788889999999999999999987764 22 2358889999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|...+++..+ ..+.+...+..++..+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998842 33557899999999999999999999999988 345577888888834445569999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHhcCCchHH
Q 007871 463 ALNIVESM-PMKP-NLALWGTLLLACRNHQN---VTLAEVVVEGLVELK---ADD-----CGLYVLLSNIYADAGMWEHA 529 (586)
Q Consensus 463 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A 529 (586)
|.+.++++ ...| +...+..+...+...|+ +++|...++++.+.. |+. ..++..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999987 3334 57777888888888888 889999999999875 432 25788899999999999999
Q ss_pred HHHHHHHHhC
Q 007871 530 LRIRKMMRKR 539 (586)
Q Consensus 530 ~~~~~~m~~~ 539 (586)
.+.++++.+.
T Consensus 241 ~~~~~~al~~ 250 (272)
T 3u4t_A 241 DAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999999874
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.2e-13 Score=115.66 Aligned_cols=165 Identities=13% Similarity=0.083 Sum_probs=142.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 007871 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 450 (586)
+...|..+...|...|++++|+..|++..+. .| +...+..+..++...|++++|...+..... ..+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHH
Confidence 4567888888999999999999999998884 44 557888888899999999999999999888 345567788888
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 007871 451 VDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 528 (586)
+..+...++++.|.+.+.+. .. +.+...+..+...+...|++++|+..|+++++.+|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 89999999999999998876 22 34678888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC
Q 007871 529 ALRIRKMMRKRK 540 (586)
Q Consensus 529 A~~~~~~m~~~~ 540 (586)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999988753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-12 Score=117.20 Aligned_cols=204 Identities=11% Similarity=-0.087 Sum_probs=139.2
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhc
Q 007871 310 VMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMN 386 (586)
Q Consensus 310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 386 (586)
+..+...+...|++++|...++.+.+.. +.+...+..+..+|...|++++|.+.++.+. ..+...+..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 3333444444444444444444444332 2233444555555555555555555555443 23455667777777888
Q ss_pred -CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 007871 387 -GFGEEALKCFAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQAL 464 (586)
Q Consensus 387 -~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 464 (586)
|++++|...++++...+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..++.++...|++++|.
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 167 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDAD 167 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHH
Confidence 888888888888877433444 467777888888889999999999888872 3456778888889999999999999
Q ss_pred HHHHhC-C-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 007871 465 NIVESM-P-MK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516 (586)
Q Consensus 465 ~~~~~~-~-~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 516 (586)
.+++++ . .+ .+...+..+...+...|+.+.+..+++.+.+..|+++.....+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 168 YYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 988876 2 22 4566677777778889999999999999998999988766544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=7.4e-14 Score=138.15 Aligned_cols=263 Identities=12% Similarity=-0.044 Sum_probs=174.8
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChhHHHHHHHHHHHc----C-CCCchhHHH
Q 007871 276 SIMIDGYAQHGNPKEALYLFREMLCQGVRPDV----ISVMGAISACAQVGALDLGKWIHVFMKRS----R-ITMDMIVQT 346 (586)
Q Consensus 276 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~ 346 (586)
..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...++...+. + .+....++.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 344455566666666666666666542 1222 24555555666666666666666555433 1 112234556
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC---------CCHhHHHHHHHHHHhcCC-----------------hHHHHHHHHHHH
Q 007871 347 ALIDMYMKCGSLDEARRIFYSMTK---------KNVISYNVMIAGLGMNGF-----------------GEEALKCFAQME 400 (586)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~ 400 (586)
.+...|...|++++|...+++..+ .....+..+...|...|+ +++|+..+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 666677777777777776665542 123356667777777787 788877777654
Q ss_pred HC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007871 401 TE----GIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMP 471 (586)
Q Consensus 401 ~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (586)
.. +..+. ..++..+...+...|++++|...+++..+...-.++ ..++..++.+|...|++++|...+++.-
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 41 11121 246777788888899999999988887762111112 2377788889999999999999887661
Q ss_pred ----CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 472 ----MKP----NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD------CGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 472 ----~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
... ....+..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|..++++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111 24567778888999999999999999998864332 4478889999999999999999999886
Q ss_pred hC
Q 007871 538 KR 539 (586)
Q Consensus 538 ~~ 539 (586)
+.
T Consensus 371 ~~ 372 (411)
T 4a1s_A 371 QL 372 (411)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-13 Score=132.71 Aligned_cols=270 Identities=12% Similarity=-0.019 Sum_probs=131.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CH
Q 007871 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPE--R-N----VFSWSIMIDGYAQHGNPKEALYLFREMLCQ----GVRP-DV 307 (586)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~~-~~ 307 (586)
....+......+...|++++|...|++..+ | + ...+..+...+...|++++|...++++... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344455566666667777777776666543 2 2 234556666666667777777666665432 1111 12
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHcCCC-C----chhHHHHHHHHHHhcCC--------------------HHHHH
Q 007871 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRIT-M----DMIVQTALIDMYMKCGS--------------------LDEAR 362 (586)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~--------------------~~~a~ 362 (586)
.++..+...+...|++++|...++...+.... + ...++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 34455555566666666666666555433100 0 12244555555555555 55555
Q ss_pred HHHhccCC-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHhhccCCHHHHH
Q 007871 363 RIFYSMTK-----K----NVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKD----DLIFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 363 ~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~ 428 (586)
..+++..+ + ....+..+...|...|++++|...+++..... -.++ ..++..+...+...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 55544321 1 11234445555555555555555555544310 0111 124444455555555555555
Q ss_pred HHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHH
Q 007871 429 RIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMP----MKPN----LALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~ 496 (586)
..+++......-.++ ..++..++.+|...|++++|...+++.- ..++ ..++..+...+...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 555554431100011 2344455555555555555555554430 0111 233444444455555555555
Q ss_pred HHHHHHHhcCCCC
Q 007871 497 VVVEGLVELKADD 509 (586)
Q Consensus 497 ~~~~~~~~~~p~~ 509 (586)
..++++.+..+..
T Consensus 328 ~~~~~al~~~~~~ 340 (406)
T 3sf4_A 328 HFAEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 5555555544444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=5e-13 Score=129.00 Aligned_cols=225 Identities=11% Similarity=0.012 Sum_probs=193.4
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhccCC---CCHhHHHHHHHHH
Q 007871 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGS-LDEARRIFYSMTK---KNVISYNVMIAGL 383 (586)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~~~ 383 (586)
..|..+...+...|++++|...++.+++.. +.+...|..+..++...|+ +++|+..|+++.. .+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456777778889999999999999999886 4467788999999999997 9999999998873 4778999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh-cCCHH
Q 007871 384 GMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR-AGELE 461 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 461 (586)
...|++++|+..|++++.. .| +...|..+..++...|++++|+..++++++ -.+.+...|+.++.+|.. .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999984 44 567899999999999999999999999998 345678999999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC--------
Q 007871 462 QA-----LNIVESM-PMKP-NLALWGTLLLACRNHQ--NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG-------- 524 (586)
Q Consensus 462 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 524 (586)
+| ++.+++. ...| +...|..+...+...| ++++|+..++++ +.+|+++.++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4677665 3345 6788888888888888 699999999998 888999999999999999975
Q ss_pred -CchHHHHHHHHH-Hh
Q 007871 525 -MWEHALRIRKMM-RK 538 (586)
Q Consensus 525 -~~~~A~~~~~~m-~~ 538 (586)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 55
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-13 Score=127.75 Aligned_cols=263 Identities=12% Similarity=-0.034 Sum_probs=178.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChhHHHHHHHHHHHc----CCC-CchhHHHH
Q 007871 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPD----VISVMGAISACAQVGALDLGKWIHVFMKRS----RIT-MDMIVQTA 347 (586)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~ 347 (586)
.....+...|++++|...|+++.+.. +.+ ...+..+...+...|+++.|...++...+. +.. ....++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34455566666666666666666542 122 234555556666666666666666554332 111 12345666
Q ss_pred HHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHHHHHH
Q 007871 348 LIDMYMKCGSLDEARRIFYSMTK-----KN----VISYNVMIAGLGMNGF--------------------GEEALKCFAQ 398 (586)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~ 398 (586)
+...|...|++++|...+++..+ ++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 67777777777777777766542 12 2366677777777787 7888887776
Q ss_pred HHHC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 007871 399 METE----GIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP----KLEHYSCLVDLLSRAGELEQALNIVES 469 (586)
Q Consensus 399 m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 469 (586)
.... +..|. ...+..+...+...|++++|...+++..+.....+ ...++..++.+|...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5431 11121 24677778888899999999999988775211111 134778889999999999999999887
Q ss_pred CC----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHH
Q 007871 470 MP----MKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADD------CGLYVLLSNIYADAGMWEHALRIRKM 535 (586)
Q Consensus 470 ~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 535 (586)
.. ..++ ...+..+...+...|++++|...++++.+..+.. ..++..++.+|.+.|++++|..++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 61 1122 4566778888999999999999999998875432 44788899999999999999999999
Q ss_pred HHhCC
Q 007871 536 MRKRK 540 (586)
Q Consensus 536 m~~~~ 540 (586)
..+..
T Consensus 329 a~~~~ 333 (338)
T 3ro2_A 329 HLEIS 333 (338)
T ss_dssp HHHC-
T ss_pred HHHHH
Confidence 87653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=137.61 Aligned_cols=192 Identities=10% Similarity=-0.067 Sum_probs=160.6
Q ss_pred CchhHHHHHHHHHHhcCCH-HHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007871 340 MDMIVQTALIDMYMKCGSL-DEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVL 415 (586)
Q Consensus 340 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 415 (586)
.+...+..+..+|...|++ ++|.+.|++.. ..+...|..+...|...|++++|...|++..+ ..|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 3455566666666666776 77777666654 23567788888888889999999999999888 567778888888
Q ss_pred HHhhcc---------CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC---
Q 007871 416 IACSHS---------GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA--------GELEQALNIVESM-PMKP--- 474 (586)
Q Consensus 416 ~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p--- 474 (586)
.++... |++++|...++++.+ -.+.+...|..++.+|... |++++|++.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 999998 999999999999988 3456788899999999998 9999999999887 3344
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 007871 475 -NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKM 535 (586)
Q Consensus 475 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 535 (586)
+...|..+..++...|++++|+..|+++.+.+|+++.++..++.++...|++++|.+.+++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7888999999999999999999999999999999999999999999999999999976543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.9e-14 Score=137.22 Aligned_cols=263 Identities=12% Similarity=-0.018 Sum_probs=130.9
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChhHHHHHHHHHHHc----CCCC-chh
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPD----VISVMGAISACAQVGALDLGKWIHVFMKRS----RITM-DMI 343 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 343 (586)
..+......+...|++++|...|+++.+.+ +.+ ...+..+...+...|+++.|...++.+.+. +..| ...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444555556666666666666655542 112 134445555555666666666655554322 1111 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCC--------------------hHHHHH
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTK-----KN----VISYNVMIAGLGMNGF--------------------GEEALK 394 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~ 394 (586)
++..+...|...|++++|...+++..+ ++ ..++..+...|...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 455555556666666666655554432 11 2245555555555565 555555
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHH
Q 007871 395 CFAQMETE----GIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALN 465 (586)
Q Consensus 395 ~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 465 (586)
.+++.... +..|. ..++..+...+...|++++|...+++..+...-.++ ..++..++.+|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55544321 11111 124555555555666666666666555441111111 2245555566666666666666
Q ss_pred HHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHH
Q 007871 466 IVESMP----MKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADD------CGLYVLLSNIYADAGMWEHALR 531 (586)
Q Consensus 466 ~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 531 (586)
.+++.- ..++ ..++..+...+...|++++|...++++.+..+.. +.++..++.+|...|++++|..
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 555440 0111 3344455555556666666666666655543222 3355555666666666666665
Q ss_pred HHHHH
Q 007871 532 IRKMM 536 (586)
Q Consensus 532 ~~~~m 536 (586)
.+++.
T Consensus 329 ~~~~a 333 (406)
T 3sf4_A 329 FAEKH 333 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=9.8e-13 Score=122.07 Aligned_cols=218 Identities=13% Similarity=0.006 Sum_probs=177.4
Q ss_pred hccCChhHHHHHHHHHHHcCCC---CchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHH
Q 007871 318 AQVGALDLGKWIHVFMKRSRIT---MDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEE 391 (586)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 391 (586)
...|++++|...++.+.+.... .+..++..+..++...|++++|...|+++. ..+...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 4557899999999999887432 245678889999999999999999999876 3467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM- 470 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 470 (586)
|...++++.+.. +.+...+..+..++...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999842 335678999999999999999999999999883 344334444555667789999999999765
Q ss_pred C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 471 P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD----DCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 471 ~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
. .+++...+ .++..+...++.++|...++++.+..|. ++..+..++.+|.+.|++++|...++++.+..
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 2 22333333 4666678888999999999999887664 47889999999999999999999999998754
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=128.07 Aligned_cols=226 Identities=8% Similarity=-0.040 Sum_probs=151.7
Q ss_pred HHHHHhccCChhHHHHHHHHHHHc----CCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC-----HhHHH
Q 007871 313 AISACAQVGALDLGKWIHVFMKRS----RITM-DMIVQTALIDMYMKCGSLDEARRIFYSMTK-----KN-----VISYN 377 (586)
Q Consensus 313 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~ 377 (586)
....+...|++++|...++...+. +-++ ...++..+..+|...|++++|...+.+..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334455666777777766666543 1111 234566677777777777777776665541 11 24667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHhhccCCHHHHHHHHHHhHHh---hCC-CCChHHHH
Q 007871 378 VMIAGLGMNGFGEEALKCFAQMETEGI-PKDD----LIFLGVLIACSHSGLATEGYRIFQSMKRH---CGI-EPKLEHYS 448 (586)
Q Consensus 378 ~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~~~ 448 (586)
.+...|...|++++|+..+++...... .++. .++..+..+|...|++++|...+++..+- .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777788888888888888877664210 1111 36777888888888888888888887661 123 33456788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC----C--CC-CHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 449 CLVDLLSRAGELEQALNIVESMP----M--KP-NLALWGTLLLACRNHQN---VTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~----~--~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
.++.+|...|++++|.+.+++.- . .| ....+..+...+...|+ +++|+.++++. ...|....++..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 88888889999999888887761 1 12 12234556666778888 77777777766 233555667888999
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 007871 519 IYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+|...|++++|..++++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999988653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-10 Score=119.36 Aligned_cols=219 Identities=11% Similarity=0.006 Sum_probs=161.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHH-HHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 007871 289 KEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGK-WIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYS 367 (586)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 367 (586)
+.+..+|++++.. ++-....|...+.-+...|+.+.|. .+|+..... ++.+...+...+....+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455677777765 3446667777777777778888886 888888764 345566667777777888888888888877
Q ss_pred cCC-------------CC------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc-c
Q 007871 368 MTK-------------KN------------VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH-S 421 (586)
Q Consensus 368 ~~~-------------~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~ 421 (586)
+.. |+ ...|...+....+.|+.+.|..+|.+..+.-..+....|...+..-.+ .
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 653 21 236777788888889999999999999885111223344333322223 3
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCChHHHH
Q 007871 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-MKP----NLALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 422 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p----~~~~~~~l~~~~~~~~~~~~a~ 496 (586)
++++.|..+|+...+. .+.+...+...++.....|+.+.|..+|++.- ..| ....|...+..-...|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5699999999999994 55567778888888889999999999999873 223 3467888888888999999999
Q ss_pred HHHHHHHhcCCCCcc
Q 007871 497 VVVEGLVELKADDCG 511 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~ 511 (586)
.+.+++.+..|+++.
T Consensus 562 ~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 562 TLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHSTTCCH
T ss_pred HHHHHHHHhCCCCcH
Confidence 999999999998763
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-12 Score=109.53 Aligned_cols=167 Identities=14% Similarity=0.058 Sum_probs=140.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 007871 341 DMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA 417 (586)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 417 (586)
++.+|..+...|...|++++|.+.|++.. +.+..++..+...|...|++++|+..+.+.... .+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL-DTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CchhHHHHHHHHHH
Confidence 56678888888888888888888888776 346778888889999999999999999988874 23455677777888
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLA 495 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a 495 (586)
+...++++.|...+.+... ..+.+...+..++.+|...|++++|++.|++. ...| +...+..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999888 35567888999999999999999999999887 3334 678899999999999999999
Q ss_pred HHHHHHHHhcCCCCc
Q 007871 496 EVVVEGLVELKADDC 510 (586)
Q Consensus 496 ~~~~~~~~~~~p~~~ 510 (586)
+..|+++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=129.64 Aligned_cols=264 Identities=11% Similarity=-0.042 Sum_probs=172.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch----hHHHHHHHHHHhCCCchHHHHHHHHHHHC----CC-CCCHHHHH
Q 007871 244 WNSMIDGYAKIGDLVAAQQLFNEMPE--R-NV----FSWSIMIDGYAQHGNPKEALYLFREMLCQ----GV-RPDVISVM 311 (586)
Q Consensus 244 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~-~~~~~~~~ 311 (586)
+..+...+...|++++|...|++..+ | +. ..|..+...+...|++++|...+++..+. +. +.....+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444555566666666666655542 2 11 34555666666666666666666665532 11 11234455
Q ss_pred HHHHHHhccCChhHHHHHHHHHHHc----C-CCCchhHHHHHHHHHHhcCC-----------------HHHHHHHHhccC
Q 007871 312 GAISACAQVGALDLGKWIHVFMKRS----R-ITMDMIVQTALIDMYMKCGS-----------------LDEARRIFYSMT 369 (586)
Q Consensus 312 ~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~~ 369 (586)
.+...+...|++++|...++.+.+. + .+....++..+...|...|+ +++|.+.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 5666666667777776666655433 1 11123456666777777777 777777766543
Q ss_pred C-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007871 370 K-----K----NVISYNVMIAGLGMNGFGEEALKCFAQMETEGI-PKD----DLIFLGVLIACSHSGLATEGYRIFQSMK 435 (586)
Q Consensus 370 ~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 435 (586)
+ . ....+..+...|...|++++|+..+++...... .++ ..++..+...+...|++++|...+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 2 1 234677788888899999999998888765210 112 1367788888999999999999998877
Q ss_pred HhhCCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 436 RHCGIEP----KLEHYSCLVDLLSRAGELEQALNIVESMP----MKP----NLALWGTLLLACRNHQNVTLAEVVVEGLV 503 (586)
Q Consensus 436 ~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 503 (586)
....-.. ...++..++.+|...|++++|.+.+++.. ..+ ....+..+...+...|++++|...++++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6211111 24677888999999999999999998761 111 24467778888999999999999999998
Q ss_pred hcCC
Q 007871 504 ELKA 507 (586)
Q Consensus 504 ~~~p 507 (586)
++.+
T Consensus 371 ~~~~ 374 (411)
T 4a1s_A 371 QLAX 374 (411)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 8654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.8e-12 Score=133.76 Aligned_cols=163 Identities=15% Similarity=0.104 Sum_probs=142.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 007871 372 NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450 (586)
Q Consensus 372 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 450 (586)
+..+|+.+...|...|++++|++.|++.++ +.|+ ...+..+..+|.+.|++++|+..|++..+ -.+.+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 356788888899999999999999999888 4554 57888899999999999999999999888 234567889999
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 007871 451 VDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 528 (586)
+.+|...|++++|++.|++. ...| +...+..+..++...|++++|+..|+++++++|+++.++..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999887 3444 678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 007871 529 ALRIRKMMRK 538 (586)
Q Consensus 529 A~~~~~~m~~ 538 (586)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-12 Score=112.74 Aligned_cols=187 Identities=10% Similarity=-0.061 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMT---K-KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLI 416 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~ 416 (586)
+..+......+...|++++|...|+... . ++...+..+..++...|++++|+..+++... ..|+. ..+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 3444455555555555555555555443 1 3444444455555555555555555555554 23332 34555555
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKL-------EHYSCLVDLLSRAGELEQALNIVESM-PMKPN---LALWGTLLLA 485 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~ 485 (586)
++...|++++|...+++..+. .+.+. ..|..++..+...|++++|++.++++ ...|+ ...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 555555555555555555541 22223 33444455555555555555555444 22333 2333333333
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+.. .+...++++....+.++..+... .....|.+++|...+++..+.
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 322 22333444444444443333222 223334458999999988773
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=8e-13 Score=125.09 Aligned_cols=236 Identities=11% Similarity=0.002 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHc------CC
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQ-------GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS------RI 338 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 338 (586)
..++..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++.+.+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456677777788888888888888777752 12233445566666677777777777776665443 11
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 007871 339 -TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE------GIPKD-DLI 410 (586)
Q Consensus 339 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~ 410 (586)
+....++..+...|...|++++|...+ +++.+. +..|. ...
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------------------------~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLC-------------------------------KRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHH-------------------------------HHHHHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHH-------------------------------HHHHHHHHHhcCCCChHHHHH
Confidence 112234444555555555555555544 443331 11121 234
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhh-----C-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC----------CCC
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHC-----G-IEPKLEHYSCLVDLLSRAGELEQALNIVESMP----------MKP 474 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p 474 (586)
+..+...+...|++++|..+++++.... + .+....++..++.+|...|++++|.+.++++. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 5555556666666666666666655410 1 11123455566666666666666666665541 011
Q ss_pred -------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 475 -------NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 475 -------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
....+......+...+.+.++...++.+....|..+.++..++.+|.+.|++++|..++++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1112222333345566777778888888888888888999999999999999999999988765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.9e-12 Score=122.56 Aligned_cols=262 Identities=13% Similarity=-0.011 Sum_probs=164.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 007871 247 MIDGYAKIGDLVAAQQLFNEMPE--R-N----VFSWSIMIDGYAQHGNPKEALYLFREMLCQ----GVRP-DVISVMGAI 314 (586)
Q Consensus 247 l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~ 314 (586)
....+...|++++|...|++..+ | + ...+..+...+...|++++|...+++.... +..| ....+..+.
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34445555666666555555432 2 1 234555556666666666666666655432 1111 133455555
Q ss_pred HHHhccCChhHHHHHHHHHHHcCCC-Cc----hhHHHHHHHHHHhcCC--------------------HHHHHHHHhccC
Q 007871 315 SACAQVGALDLGKWIHVFMKRSRIT-MD----MIVQTALIDMYMKCGS--------------------LDEARRIFYSMT 369 (586)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~ 369 (586)
..+...|++++|...++...+.... ++ ..++..+...|...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 5666666666666666555433110 11 2355566666666777 777766665543
Q ss_pred C-----C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhH
Q 007871 370 K-----K----NVISYNVMIAGLGMNGFGEEALKCFAQMETEG-IPKD----DLIFLGVLIACSHSGLATEGYRIFQSMK 435 (586)
Q Consensus 370 ~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 435 (586)
+ + ....+..+...+...|++++|...+++..... -.++ ..++..+...+...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 1 13466777788888899999988888876421 0111 2367778888889999999999998876
Q ss_pred HhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 436 RHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMP----MKP----NLALWGTLLLACRNHQNVTLAEVVVEGLV 503 (586)
Q Consensus 436 ~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 503 (586)
....-..+ ..++..++.+|...|++++|...+++.- ..+ ...++..+...+...|++++|...++++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 52111111 5577788899999999999999988761 111 24466778888999999999999999999
Q ss_pred hcCCC
Q 007871 504 ELKAD 508 (586)
Q Consensus 504 ~~~p~ 508 (586)
+..+.
T Consensus 331 ~~~~~ 335 (338)
T 3ro2_A 331 EISRE 335 (338)
T ss_dssp HC---
T ss_pred HHHHh
Confidence 87653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=106.79 Aligned_cols=161 Identities=15% Similarity=0.056 Sum_probs=109.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 007871 376 YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455 (586)
Q Consensus 376 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (586)
+..+...+...|++++|...++++... .+.+...+..+...+...|++++|...++++.+. .+.+...+..++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 444455555556666666665555442 1234455566666666666666666666666652 3345566666677777
Q ss_pred hcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 456 RAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
..|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+..|.++.++..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777777777665 1 22356667777777888888888888888888888888888888888888888888888888
Q ss_pred HHHHhC
Q 007871 534 KMMRKR 539 (586)
Q Consensus 534 ~~m~~~ 539 (586)
+++.+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=9.5e-11 Score=110.59 Aligned_cols=219 Identities=12% Similarity=0.081 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------hHHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 007871 289 KEALYLFREMLCQGVRPDVISVMGAISACA-------QVGAL-------DLGKWIHVFMKRSRITMDMIVQTALIDMYMK 354 (586)
Q Consensus 289 ~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 354 (586)
++|...|++++... +.+...|..++..+. ..|+. ++|..+|+...+.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777776642 345555555555543 23554 6677777766663113344566666666777
Q ss_pred cCCHHHHHHHHhccCC--C-CHh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-hccCCHHHHHH
Q 007871 355 CGSLDEARRIFYSMTK--K-NVI-SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC-SHSGLATEGYR 429 (586)
Q Consensus 355 ~g~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~A~~ 429 (586)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+.+ +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777766553 2 233 66777777777777777777777776632 22333333332221 12577777777
Q ss_pred HHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 430 IFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP----MKP--NLALWGTLLLACRNHQNVTLAEVVVEGLV 503 (586)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 503 (586)
+|++..+. .+.+...|..++..+.+.|++++|..+|++.- ..| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777662 34456677777777777777777777777662 233 35566666666677777777777777777
Q ss_pred hcCCCCcc
Q 007871 504 ELKADDCG 511 (586)
Q Consensus 504 ~~~p~~~~ 511 (586)
+..|+++.
T Consensus 269 ~~~p~~~~ 276 (308)
T 2ond_A 269 TAFREEYE 276 (308)
T ss_dssp HHTTTTTS
T ss_pred HHcccccc
Confidence 77776543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-11 Score=116.38 Aligned_cols=229 Identities=8% Similarity=-0.039 Sum_probs=159.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCC------CchhHHH
Q 007871 278 MIDGYAQHGNPKEALYLFREMLCQ----GVRP-DVISVMGAISACAQVGALDLGKWIHVFMKRSRIT------MDMIVQT 346 (586)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~ 346 (586)
....+...|++++|...+++..+. +-.+ ...++..+...+...|+++.|...+....+.... ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455666666666666666542 1111 2234555666666666666666666655443111 1134566
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 007871 347 ALIDMYMKCGSLDEARRIFYSMTK-----KN----VISYNVMIAGLGMNGFGEEALKCFAQMETE----GIPK-DDLIFL 412 (586)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~ 412 (586)
.+..+|...|++++|...+++..+ ++ ..++..+...|...|++++|+..+++.... +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777788888888888887776652 11 236777888899999999999999887762 3323 346788
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhh---CCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 007871 413 GVLIACSHSGLATEGYRIFQSMKRHC---GIEPKLEHYSCLVDLLSRAGE---LEQALNIVESMPMKPN-LALWGTLLLA 485 (586)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 485 (586)
.+..++...|++++|...+++...-. +.+.....+..+...|...|+ +++|+.++++....|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999877621 222223446778889999999 8999999999865543 4466778888
Q ss_pred HHhcCChHHHHHHHHHHHhcC
Q 007871 486 CRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~ 506 (586)
|...|++++|...++++.+..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.6e-10 Score=108.55 Aligned_cols=262 Identities=14% Similarity=-0.022 Sum_probs=163.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChhHHHHHHHHHHHcCCC-Cc----hhHHHHH
Q 007871 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVI----SVMGAISACAQVGALDLGKWIHVFMKRSRIT-MD----MIVQTAL 348 (586)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 348 (586)
....+...|++++|...+++........+.. .+..+...+...|+++.|...++...+.... .+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344556677777777777766543212221 3344455566677777777776665443111 11 1234556
Q ss_pred HHHHHhcCCHHHHHHHHhccCC----------C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHHHHHH
Q 007871 349 IDMYMKCGSLDEARRIFYSMTK----------K-NVISYNVMIAGLGMNGFGEEALKCFAQMETEGIP--K--DDLIFLG 413 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~~~ 413 (586)
...+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 6677777888777777765541 1 1234556677778888888888888877653211 1 2345667
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHH
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYS-----CLVDLLSRAGELEQALNIVESMP-MKPN-----LALWGTL 482 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~l 482 (586)
+...+...|++++|...+++.............+. ..+..+...|++++|...+++.. ..|. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 77778888888888888888765211111111111 23344778888999888888773 1121 2345566
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC------CcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 483 LLACRNHQNVTLAEVVVEGLVELKAD------DCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 483 ~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
...+...|++++|...++++.+..+. ...++..++.++...|++++|...+++....
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 67788889999999888888775422 1236667788888899999998888887653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.7e-11 Score=112.10 Aligned_cols=214 Identities=10% Similarity=0.020 Sum_probs=173.0
Q ss_pred hHHHHHHHHHHHcCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhccCC---C-CHhHHHHHHHHHHh
Q 007871 324 DLGKWIHVFMKRSRITMDMIVQTALIDMYM-------KCGSL-------DEARRIFYSMTK---K-NVISYNVMIAGLGM 385 (586)
Q Consensus 324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 385 (586)
++|...|+.+.+.. +.++..|..++..+. ..|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888887764 456677777777765 35775 899999997654 3 55689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh-hcCCHHH
Q 007871 386 NGFGEEALKCFAQMETEGIPKD-DL-IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS-RAGELEQ 462 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 462 (586)
.|++++|..+|++..+ ..|+ .. .|..++..+.+.|++++|..+|++..+ ..+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 5564 33 788899999999999999999999988 33455666655444432 3799999
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 463 ALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL---KAD-DCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 463 A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
|..+|++. .. +.+...|..++..+...|++++|..+|+++++. .|. +..+|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 22 236788999999999999999999999999996 443 6678999999999999999999999999
Q ss_pred HhCCCc
Q 007871 537 RKRKIK 542 (586)
Q Consensus 537 ~~~~~~ 542 (586)
.+....
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 876543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-11 Score=121.03 Aligned_cols=177 Identities=9% Similarity=-0.067 Sum_probs=155.4
Q ss_pred HHHHHHHHhccC---CCCHhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHH
Q 007871 358 LDEARRIFYSMT---KKNVISYNVMIAGLGMNGFG-EEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQ 432 (586)
Q Consensus 358 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 432 (586)
++++...++... ..+...+..+...+...|++ ++|+..|++..+. .| +...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666665543 34678899999999999999 9999999999884 44 46899999999999999999999999
Q ss_pred HhHHhhCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CChH
Q 007871 433 SMKRHCGIEPKLEHYSCLVDLLSRA---------GELEQALNIVESM-PMKP-NLALWGTLLLACRNH--------QNVT 493 (586)
Q Consensus 433 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------~~~~ 493 (586)
++.+ ..|+...+..++.+|... |++++|++.+++. ...| +...|..+..+|... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9987 347788999999999999 9999999999987 3334 688899999999888 9999
Q ss_pred HHHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 494 LAEVVVEGLVELKA---DDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 494 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+|+..|+++++.+| .++.++..++.+|...|++++|.+.+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999999774
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-09 Score=109.59 Aligned_cols=428 Identities=9% Similarity=0.023 Sum_probs=268.0
Q ss_pred CchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hhHHHH
Q 007871 92 NPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH---MGCARS 168 (586)
Q Consensus 92 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~ 168 (586)
...+.+..|++.+..+ +-|..+|..++..+...+.++.+..+++.+... ++.....|...+..-.+.|+ ++.+.+
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455566666666554 347788889998888888899999999998875 45667788888888888888 888988
Q ss_pred HhccCCC-----CChhhHHHHHHHHHhCCCh--------hHHHHHHhhCC------CCC-hhHHHHHHHHHhh-------
Q 007871 169 VFEGSEI-----KDLVSWNLVLRGFVECGEM--------GKAREVFDEMP------QKD-AISWSIMIDGYRK------- 221 (586)
Q Consensus 169 ~~~~~~~-----~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~~-~~~~~~ll~~~~~------- 221 (586)
+|++... +++..|...+....+.++. +....+|+... .++ ...|...+... .
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~-~~~~~~~~ 203 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFL-EHWKPVNK 203 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHH-HTCCCCSH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHH-HhccccCc
Confidence 8886543 5677777777665554443 22335555432 122 23444444332 1
Q ss_pred --ccCCHHHHHHHHHhCCC-C--C-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHH
Q 007871 222 --KKGDISSARILFEHMPI-K--D-LISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLF 295 (586)
Q Consensus 222 --~~g~~~~a~~~~~~~~~-~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 295 (586)
..++++.+..+|++... | + ..+|......-...+. ..+.+++ .- ...+++.|...+
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~---------------~e--~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHI---------------GE--LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHH---------------HH--HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHH---------------HH--hhHHHHHHHHHH
Confidence 12234555555555542 1 0 1122211111000000 0011110 00 011233344444
Q ss_pred HHHHH--CCC----C-----------C-----CH---HHHHHHHHHHhccC-------ChhHHHHHHHHHHHcCCCCchh
Q 007871 296 REMLC--QGV----R-----------P-----DV---ISVMGAISACAQVG-------ALDLGKWIHVFMKRSRITMDMI 343 (586)
Q Consensus 296 ~~m~~--~g~----~-----------~-----~~---~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~ 343 (586)
.++.. .++ + | +. ..|...+.---..+ ..+.+..+|++++..- +....
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHH
Confidence 43321 111 0 1 11 22333332222211 1234566788877663 45677
Q ss_pred HHHHHHHHHHhcCCHHHHH-HHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---------CCCC---
Q 007871 344 VQTALIDMYMKCGSLDEAR-RIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEG---------IPKD--- 407 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---------~~p~--- 407 (586)
+|-..+..+...|+.++|. .+|+.... .+...|...+....+.|++++|..+|+++.... -.|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 8888888888889988896 99887763 456667788888899999999999999988631 0142
Q ss_pred ---------HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhC--CCCCC
Q 007871 408 ---------DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG-ELEQALNIVESM--PMKPN 475 (586)
Q Consensus 408 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~ 475 (586)
...|...+....+.|+.+.|..+|.++.+. ........|...+..-.+.| +.+.|.++|+.. ..+.+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 235777777777889999999999999883 12223445554444444544 589999999877 22335
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKAD---DCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
...|...+......|+.+.|..+|++++...|+ ...+|...+..-.+.|+.+.+..+.+++.+.-..
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 667778888888899999999999999998873 5577888888889999999999999999876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-11 Score=116.32 Aligned_cols=223 Identities=11% Similarity=-0.025 Sum_probs=149.7
Q ss_pred HHHhccCChhHHHHHHHHHHHcCC--C---CchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CC-----HhHHHHH
Q 007871 315 SACAQVGALDLGKWIHVFMKRSRI--T---MDMIVQTALIDMYMKCGSLDEARRIFYSMTK-----KN-----VISYNVM 379 (586)
Q Consensus 315 ~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~~l 379 (586)
..+...|++++|...++.+.+... . ....++..+..+|...|+++.|...+++..+ ++ ..+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344566777777777776654311 1 1234566677777777777777776665541 11 3456777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHh---hCCCCChHHHHHHH
Q 007871 380 IAGLGMNGFGEEALKCFAQMETE----GIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRH---CGIEPKLEHYSCLV 451 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~~l~ 451 (586)
...|...|++++|+..+++.... |..+ ...++..+..+|...|++++|...+++...- .+.+....++..++
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 78888888888888888776552 1111 1246777888888889999998888887661 12333467788888
Q ss_pred HHHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 452 DLLSRAGELEQALNIVESM----PM--KPN-LALWGTLLLACRNHQN---VTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
.+|.+.|++++|.+.+++. .. .|. ...+..+...+...++ +.+|+..+++. ...|.....+..++.+|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 8899999999998888765 11 222 3344555555677777 77777777762 222445567778999999
Q ss_pred hcCCchHHHHHHHHHHh
Q 007871 522 DAGMWEHALRIRKMMRK 538 (586)
Q Consensus 522 ~~g~~~~A~~~~~~m~~ 538 (586)
..|++++|..++++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999888754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-10 Score=104.94 Aligned_cols=206 Identities=9% Similarity=-0.024 Sum_probs=163.1
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHH
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMI 380 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~ 380 (586)
+.|+..+......+...|++++|...|+...+...+++...+..+..++...|++++|...+++..+ .+...|..+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 3466788888999999999999999999999987546777777799999999999999999998763 3567889999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC--ChHHHHHH
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKD-D-------LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP--KLEHYSCL 450 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l 450 (586)
..|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|...++++.+ ..+. +...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHH
Confidence 9999999999999999999884 443 4 4577788888999999999999999987 2333 46788888
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 451 VDLLSRAGELEQALNIVESMP--MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+.+|...|+. +++++. ...+...+.... ....+.+++|+..++++.+++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 8888776653 222221 122344444333 34456799999999999999999998888777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-10 Score=99.81 Aligned_cols=167 Identities=8% Similarity=-0.046 Sum_probs=144.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 007871 343 IVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419 (586)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 419 (586)
..+..+...+...|++++|...++.+.+ .+...+..+...+...|++++|...++++.+. .+.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHH
Confidence 4566778888899999999999998874 46778888999999999999999999999885 2446678888999999
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHH
Q 007871 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEV 497 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~ 497 (586)
..|++++|...++++.. ..+.+...+..++.++...|++++|.++++++ . .+.+...+..+...+...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988 35567888999999999999999999999887 2 23467888899999999999999999
Q ss_pred HHHHHHhcCCCCcch
Q 007871 498 VVEGLVELKADDCGL 512 (586)
Q Consensus 498 ~~~~~~~~~p~~~~~ 512 (586)
.++++.+..|.++..
T Consensus 166 ~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 166 HFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHCCCGG
T ss_pred HHHHHHHcCCCchhh
Confidence 999999998887654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-09 Score=105.30 Aligned_cols=225 Identities=11% Similarity=0.032 Sum_probs=142.6
Q ss_pred HHHhCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChhHHHHHHHHHHHcCC-----C-CchhHHHHHH
Q 007871 281 GYAQHGNPKEALYLFREMLCQGV-RPD----VISVMGAISACAQVGALDLGKWIHVFMKRSRI-----T-MDMIVQTALI 349 (586)
Q Consensus 281 ~~~~~~~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l~ 349 (586)
.+...|++++|+..|+++.+... .++ ..++..+...+...|+++.|...+....+... . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34445555555555555443210 011 22344444455555555555555544433210 0 0133455666
Q ss_pred HHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 007871 350 DMYMKCGSLDEARRIFYSMTK-----KN----VISYNVMIAGLGMNGFGEEALKCFAQMETE----GIPKDDLIFLGVLI 416 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~ 416 (586)
.+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++.... +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 666677777777666665442 11 235667777888888888888888877651 22233567888888
Q ss_pred HhhccCCHHHHHHHHHHhHHhhC---CCCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCG---IEPKLEHYSCLVDLLSRAGE---LEQALNIVESMPMKPN-LALWGTLLLACRNH 489 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~ 489 (586)
++...|++++|...+++..+... .+.....+..+...|...|+ +++|+.++++....|+ ...+..+...|...
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHC
Confidence 99999999999999998877322 22234456667777888888 8899999998754443 34556777789999
Q ss_pred CChHHHHHHHHHHHhc
Q 007871 490 QNVTLAEVVVEGLVEL 505 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~ 505 (586)
|++++|...++++.+.
T Consensus 350 g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 350 CHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-11 Score=112.96 Aligned_cols=238 Identities=11% Similarity=0.015 Sum_probs=143.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------C---ChhHHHHHHHHHHhCCCchHHHHHHHHHHHC------C
Q 007871 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPE--------R---NVFSWSIMIDGYAQHGNPKEALYLFREMLCQ------G 302 (586)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g 302 (586)
+..++..+...+...|++++|...|+++.+ . ...++..+...+...|++++|...++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 455677788888888888888888887754 1 2356778888999999999999999988764 2
Q ss_pred C-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcC------CCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHh
Q 007871 303 V-RPDVISVMGAISACAQVGALDLGKWIHVFMKRSR------ITM-DMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVI 374 (586)
Q Consensus 303 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 374 (586)
- +.....+..+...+...|++++|...++.+.+.. ..| ....+..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la------------------------- 160 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA------------------------- 160 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------------------------
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH-------------------------
Confidence 2 2245577888889999999999999998876541 111 122334444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhh------CCC
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETE------GIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHC------GIE 441 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~ 441 (586)
..+...|++++|+.+++++... +..|. ..++..+..++...|++++|...++++.+.. ...
T Consensus 161 ------~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 161 ------LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp ------HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ------HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4444455555555555544432 11222 2355566666666677777776666665410 011
Q ss_pred C-C------hHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 442 P-K------LEHYSCLVDLLSRAGELEQALNIVESMP-MKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 442 ~-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
+ . ...+..+...+...+.+.+|...+.... ..| ...++..+...|...|++++|..++++++++.|.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 1 1122222333344455555555565553 223 4567788888899999999999999999887664
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.2e-10 Score=108.11 Aligned_cols=224 Identities=10% Similarity=-0.006 Sum_probs=114.7
Q ss_pred hCCCchHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHc------CC-CCchhHHHHHH
Q 007871 284 QHGNPKEALYLFREMLCQ-------GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRS------RI-TMDMIVQTALI 349 (586)
Q Consensus 284 ~~~~~~~A~~~~~~m~~~-------g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 349 (586)
..|++++|+..+++..+. ..+....++..+...+...|++++|...++.+.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665541 11223445566666666777777777666665443 11 11223444455
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHhhccC
Q 007871 350 DMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE------GIPK-DDLIFLGVLIACSHSG 422 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~g 422 (586)
.+|...|++++|.+.+ ++.... ...| ...++..+...+...|
T Consensus 93 ~~~~~~g~~~~A~~~~-------------------------------~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 141 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLC-------------------------------KRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141 (283)
T ss_dssp HHHHTTTCHHHHHHHH-------------------------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHhccHHHHHHHH-------------------------------HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC
Confidence 5555555555555554 443321 0012 1235555566666666
Q ss_pred CHHHHHHHHHHhHHhh-----C-CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC----------CCC-CHHHHHHHHHH
Q 007871 423 LATEGYRIFQSMKRHC-----G-IEPKLEHYSCLVDLLSRAGELEQALNIVESMP----------MKP-NLALWGTLLLA 485 (586)
Q Consensus 423 ~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~p-~~~~~~~l~~~ 485 (586)
++++|..+++++.+.. . .+....++..++.+|...|++++|..+++++- ..+ ....+..+...
T Consensus 142 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (283)
T 3edt_B 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEER 221 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 6666666666655410 0 11234456666666666666666666665541 111 12222222222
Q ss_pred HHhc------CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 486 CRNH------QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 486 ~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.... ..+..+...++......|..+.++..++.+|...|++++|..++++..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 222 EESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222 2233344444443334455667788888889999999999998888765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-10 Score=107.01 Aligned_cols=186 Identities=9% Similarity=-0.013 Sum_probs=119.3
Q ss_pred HHHhcCCHHHHHHHHhccCC-------C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHH
Q 007871 351 MYMKCGSLDEARRIFYSMTK-------K--NVISYNVMIAGLGMNGFGEEALKCFAQMETE----GIPKD-DLIFLGVLI 416 (586)
Q Consensus 351 ~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~ 416 (586)
.|...|++++|.+.|.+... + ...+|+.+...|...|++++|+..+++.... |-.+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666554431 1 1346677777777777887777777776542 11111 246777888
Q ss_pred Hhhcc-CCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CH-----HHHHHH
Q 007871 417 ACSHS-GLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESM-PMKP---NL-----ALWGTL 482 (586)
Q Consensus 417 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~-----~~~~~l 482 (586)
+|... |++++|...|++..+-..-..+ ..++..++..|...|++++|+..+++. ...| .. ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999998888762110111 356788889999999999999998876 1222 21 256677
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCcch-----HHHHHHHHH--hcCCchHHHHHHHHH
Q 007871 483 LLACRNHQNVTLAEVVVEGLVELKADDCGL-----YVLLSNIYA--DAGMWEHALRIRKMM 536 (586)
Q Consensus 483 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m 536 (586)
..++...|++++|+..++++++++|..... +..++.++. ..+++++|+..|+++
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 777888999999999999999988876543 344555554 446677777777544
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-09 Score=99.36 Aligned_cols=181 Identities=9% Similarity=-0.067 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-C---HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMTK--K-N---VISYNVMIAGLGMNGFGEEALKCFAQMETEGI-PKD-DLIFLG 413 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~~ 413 (586)
...+..+...+.+.|++++|...|+.+.+ | + ...+..+..+|...|++++|+..|++...... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 33444455555555666666665555542 2 2 34455555555555566666655555555210 111 234444
Q ss_pred HHHHhhc--------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 007871 414 VLIACSH--------SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLA 485 (586)
Q Consensus 414 l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 485 (586)
+..++.. .|++++|...|+++.+. .+.+......+.......+.. ...+..+...
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 4455554 55555555555555552 222222222211111110000 0113556777
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhc----------CCchHHHHHHHHHHhC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDC---GLYVLLSNIYADA----------GMWEHALRIRKMMRKR 539 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~ 539 (586)
+...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...++++.+.
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 8999999999999999999998854 5788999999877 8999999999999774
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=7e-10 Score=103.61 Aligned_cols=174 Identities=10% Similarity=0.022 Sum_probs=112.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCC---C---
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTK-----KN----VISYNVMIAGLGMN-GFGEEALKCFAQMETEGIPK---D--- 407 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~g~~p---~--- 407 (586)
+++.+..+|...|++++|...+++..+ .+ ..+++.+...|... |++++|+..|++..+. .| +
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 344444444445555554444443331 11 23566777888885 8888888888887662 22 1
Q ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCC-CCh-----HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH--
Q 007871 408 -DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE-PKL-----EHYSCLVDLLSRAGELEQALNIVESM-PMKPNLA-- 477 (586)
Q Consensus 408 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-- 477 (586)
..++..+...+...|++++|...|++.... ... +.. ..+..++.++...|++++|...+++. ...|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 246788888899999999999999998873 221 121 25777888899999999999999887 3344321
Q ss_pred ----HHHHHHHHHH--hcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 478 ----LWGTLLLACR--NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 478 ----~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
.+..++.++. ..+++++|+..|+++..++|.....+..+-..+
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 2344555554 456788999999888888877655555544433
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.7e-10 Score=118.94 Aligned_cols=163 Identities=13% Similarity=0.094 Sum_probs=132.6
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 007871 341 DMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD-DLIFLGVLI 416 (586)
Q Consensus 341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~ 416 (586)
+...++.+..+|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..|++.++ +.|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 455777788888888888888888887652 4567888888888899999999999998888 4554 578888888
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 494 (586)
++...|++++|++.|++..+ -.+.+...+..++.+|...|++++|++.|++. ...| +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999998887 23456788889999999999999999999877 3445 57788888888999999999
Q ss_pred HHHHHHHHHhcCC
Q 007871 495 AEVVVEGLVELKA 507 (586)
Q Consensus 495 a~~~~~~~~~~~p 507 (586)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999998887543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-09 Score=103.45 Aligned_cols=258 Identities=12% Similarity=-0.002 Sum_probs=152.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCC----CCh----hHHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCCH----HHHHHHHH
Q 007871 249 DGYAKIGDLVAAQQLFNEMPE----RNV----FSWSIMIDGYAQHGNPKEALYLFREMLCQGV-RPDV----ISVMGAIS 315 (586)
Q Consensus 249 ~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~~~~----~~~~~l~~ 315 (586)
..+...|++++|...+++... .+. .+++.+...+...|++++|...+++...... .++. .++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344455666666655554321 111 1344555566666777777776666554210 0111 22344555
Q ss_pred HHhccCChhHHHHHHHHHHHc----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHhccCC--C------CHhHHHHHH
Q 007871 316 ACAQVGALDLGKWIHVFMKRS----RIT--M-DMIVQTALIDMYMKCGSLDEARRIFYSMTK--K------NVISYNVMI 380 (586)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------~~~~~~~l~ 380 (586)
.+...|++++|...++...+. +.. | ....+..+...+...|++++|...+++... + ....+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 666677777777776665433 211 2 223455566777777787777777765431 1 124566677
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHhhccCCHHHHHHHHHHhHHhhCCCC---ChHHHHHHH
Q 007871 381 AGLGMNGFGEEALKCFAQMETEGIPKD--DLIFL----GVLIACSHSGLATEGYRIFQSMKRHCGIEP---KLEHYSCLV 451 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~~l~ 451 (586)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...++..... ...+ ....+..+.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHH
Confidence 778888888888888887765311111 11111 2233466788888888888887652 2111 122456777
Q ss_pred HHHhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 452 DLLSRAGELEQALNIVESMP-------MKPNL-ALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
.++...|++++|...+++.. ..++. ..+..+..++...|+.++|...++++.+..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 88888899998888887651 11122 2455566668888999999999998887643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.15 E-value=8.5e-09 Score=94.25 Aligned_cols=245 Identities=11% Similarity=0.014 Sum_probs=153.7
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHH
Q 007871 248 IDGYAKIGDLVAAQQLFNEMPERN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLG 326 (586)
Q Consensus 248 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a 326 (586)
++-..-.|.+..++.-...+...+ ...-..+.+++...|++... ..-.|....+..+...+ ..+ +
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 344556788888887666654322 22333345777777777642 11234443444333333 222 5
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 007871 327 KWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK-----KNVISYNVMIAGLGMNGFGEEALKCFAQMET 401 (586)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 401 (586)
...++...+.+ .++...+..+..++...|++++|++++..... .+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666554 34445555777888888888888888887643 2455677778888888888888888888877
Q ss_pred CCCCC-----CHHHHHHHHHHh--hccC--CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 007871 402 EGIPK-----DDLIFLGVLIAC--SHSG--LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPM 472 (586)
Q Consensus 402 ~g~~p-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 472 (586)
..| +..+...++.++ ...| ++.+|..+|+++... .|+..+...+..++.+.|++++|.+.++.+..
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466 355666666552 2233 788888888887652 34422223334477888888888888875421
Q ss_pred -----------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHH
Q 007871 473 -----------KP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 473 -----------~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
.| ++.++..++......|+ +|.++++++.+..|++|.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 13 45555455555555565 778888888888888875543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.15 E-value=4.3e-09 Score=96.21 Aligned_cols=174 Identities=10% Similarity=0.024 Sum_probs=91.0
Q ss_pred HHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 361 ARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 361 a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
|...|++.. .++..++..+..++...|++++|++++.+.+..|-.+ +...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 445555443 2334444455556666666666666666654433212 234555556666666666666666666655
Q ss_pred hhCCCC-----ChHHHHHHHHH--HhhcC--CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-
Q 007871 437 HCGIEP-----KLEHYSCLVDL--LSRAG--ELEQALNIVESMPM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVEL- 505 (586)
Q Consensus 437 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 505 (586)
. .| +..+...|+.+ ....| ++.+|..+|+++.. .|+..+...++.++...|++++|+..++.+.+.
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 1 33 23333444433 22223 66666666666522 233223333333556666666666666655554
Q ss_pred ---------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 506 ---------KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 506 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+|+++.++..++.+....|+ +|.++++++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 35566666555555555555 556666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-09 Score=88.58 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=87.3
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRN 488 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 488 (586)
+..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|..+++++ . .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 444555555566666666666666552 2334555666666666666666666666655 1 22345666667777778
Q ss_pred cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 489 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.|++++|...++++.+..|.++..+..++.++...|++++|...++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 888888888888888888888888888888888888888888888887654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-10 Score=95.29 Aligned_cols=140 Identities=10% Similarity=-0.039 Sum_probs=76.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH
Q 007871 382 GLGMNGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL 460 (586)
Q Consensus 382 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 460 (586)
.+...|++++|+..+++... ..|+. ..+..+...|...|++++|.+.|++..+ -.+.+..+|..++.+|...|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 34445556666666655443 22322 2344555556666666666666666655 2333555666666666666666
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 007871 461 EQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEV-VVEGLVELKADDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 461 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 525 (586)
++|+..|++. ...| +...+..+...+...|++++|.. +++++++++|.++.+|...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 6666666554 2233 45555555555666666554433 3456666666666666666655555553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.3e-09 Score=95.81 Aligned_cols=181 Identities=12% Similarity=0.011 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHH
Q 007871 343 IVQTALIDMYMKCGSLDEARRIFYSMTK--KN----VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD----LIFL 412 (586)
Q Consensus 343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~ 412 (586)
..+..+...+...|++++|...|+.+.+ |+ ...+..+..+|.+.|++++|+..|+++.+. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556666777777777777776652 22 235666667777777777777777777663 2322 2344
Q ss_pred HHHHHhhc------------------cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 007871 413 GVLIACSH------------------SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP 474 (586)
Q Consensus 413 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 474 (586)
.+..++.. .|++++|...|+++.+ ..|.+...+........-.+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~~~------------- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDRLA------------- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHHH-------------
Confidence 44444432 3455666666666555 22223322222111100000000
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC---GLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
.....+...+...|++++|+..|+++++..|+++ .++..++.+|.+.|++++|.+.++++...+..
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0112455668899999999999999999999986 57899999999999999999999999876554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-09 Score=99.88 Aligned_cols=204 Identities=12% Similarity=-0.042 Sum_probs=145.3
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccCC--C----CHhH
Q 007871 304 RPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD--MIVQTALIDMYMKCGSLDEARRIFYSMTK--K----NVIS 375 (586)
Q Consensus 304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~~~~ 375 (586)
+.+...+......+...|++++|...|+.+.+...... ...+..+..+|...|++++|...|+.+.+ | ....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 44667777888889999999999999999988753221 56788899999999999999999998863 3 2346
Q ss_pred HHHHHHHHHh--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHH
Q 007871 376 YNVMIAGLGM--------NGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEH 446 (586)
Q Consensus 376 ~~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 446 (586)
+..+..++.. .|++++|+..|++.... .|+. .... +...+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~--------------a~~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDD--------------ATQKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHH--------------HHHHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHH--------------HHHHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999884 4443 2221 11111111110 1123
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhcCCCCcc
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-PMKP----NLALWGTLLLACRNH----------QNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
+..++.+|...|++++|+..|+++ ...| ....+..+..++... |++++|+..++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556778888888888888888776 2223 245666677777655 8999999999999999999874
Q ss_pred h---HHHHHHHHHhcCCchH
Q 007871 512 L---YVLLSNIYADAGMWEH 528 (586)
Q Consensus 512 ~---~~~l~~~~~~~g~~~~ 528 (586)
. ...+..++.+.|++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 4 4445555555555443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=96.95 Aligned_cols=124 Identities=12% Similarity=-0.003 Sum_probs=94.6
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQN 491 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~ 491 (586)
|...+...|++++|+..++.... ..+.+...+..++.+|...|++++|++.|++. ...| +...|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 44566777888888888887755 22234455667888888999999999988877 3344 67888888888888999
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH-HHHHHhC
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI-RKMMRKR 539 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 539 (586)
+++|+..|+++++++|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988776654 5776654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-08 Score=89.84 Aligned_cols=163 Identities=9% Similarity=-0.015 Sum_probs=130.6
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC----CHHHHHHHHHHhHHhhCCCCChHH
Q 007871 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG----LATEGYRIFQSMKRHCGIEPKLEH 446 (586)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~ 446 (586)
.++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|++..+. -+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence 466677777777778888888888888888765 56677777777777 6 899999999988762 35677
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCcchHH
Q 007871 447 YSCLVDLLSR----AGELEQALNIVESMPMKPN----LALWGTLLLACRN----HQNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 447 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
+..|...|.. .+++++|+++|++.....+ +..+..+...|.. .+++++|+.+|+++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 8888888877 8899999999988743333 7788888888887 78999999999999988 67778899
Q ss_pred HHHHHHHhc-C-----CchHHHHHHHHHHhCCCc
Q 007871 515 LLSNIYADA-G-----MWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 515 ~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~~ 542 (586)
.|+.+|... | ++++|..++++..+.|..
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999998765 3 899999999998887653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-09 Score=98.38 Aligned_cols=176 Identities=9% Similarity=-0.046 Sum_probs=141.0
Q ss_pred HHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 358 LDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 358 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
.+.....+......+...+..+...+...|++++|...|++.... .| +...+..+...+...|++++|...++++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344555555555556667778888899999999999999999884 44 557888899999999999999999999876
Q ss_pred hhCCCCChHH-HHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--cc
Q 007871 437 HCGIEPKLEH-YSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD--CG 511 (586)
Q Consensus 437 ~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~ 511 (586)
. .|+... .......+...++.++|...+++. ... .+...+..+...+...|++++|+..++++++.+|.+ ..
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 2 344433 333334467778888888888776 233 468888999999999999999999999999999998 88
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 512 LYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.+..++.+|...|+.++|...|++...
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 999999999999999999999887643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.05 E-value=7.1e-10 Score=116.35 Aligned_cols=145 Identities=9% Similarity=-0.065 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+..+...+...|++++|+..|++..+. -+.+...+..+..++...|++++|...|+++.+ -.+.+...+..++.+
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAER-VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAAT 510 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHH
Confidence 34444444444444444444444444442 111233444444444444444444444444444 122233444444444
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 454 LSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
|...|++++ ++.|+++ ...| +...+..+..++...|++++|+..|+++.+.+|.++.++..++.++..
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence 444444444 4444443 1122 334444444444444444444444444444444444444444444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=8.7e-09 Score=83.25 Aligned_cols=132 Identities=14% Similarity=0.111 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
.|..+...+...|++++|..+++++...+ +.+...+..+...+...|++++|..+++++... .+.+...+..++.++
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46667778888888888888888887742 345667778888888889999999999988872 345677788888899
Q ss_pred hhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 455 SRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
...|++++|.+.++++ . .+.+...+..+...+...|++++|...++++.+.+|.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999988876 2 23367778888888999999999999999998887753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2e-08 Score=92.97 Aligned_cols=203 Identities=9% Similarity=-0.031 Sum_probs=118.0
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcC-----C-
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQ------GV-RPDVISVMGAISACAQVGALDLGKWIHVFMKRSR-----I- 338 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~- 338 (586)
..++..+...+...|++++|+..++++.+. +- +....++..+...+...|++++|...+..+.+.. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 456777888888888888888888887754 22 2234567788888899999999998888765541 0
Q ss_pred -CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-HHH
Q 007871 339 -TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETE------GIPKD-DLI 410 (586)
Q Consensus 339 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~ 410 (586)
+....++..+..+|... |++++|...+++.... +..|+ ..+
T Consensus 123 ~~~~~~~~~~la~~~~~~-------------------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQ-------------------------------GKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp CHHHHHHHHHHHHHHHTT-------------------------------TCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHc-------------------------------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 11223344444444444 4445554444444332 11222 245
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhh------C-CCCChHHHHHHHHHHhhcC------CHHHHHHHHHhCCC-CC-C
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHC------G-IEPKLEHYSCLVDLLSRAG------ELEQALNIVESMPM-KP-N 475 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~-~p-~ 475 (586)
+..+..++...|++++|..+++++.+.. . .......+..+...+...+ .+..+...++.... .| .
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 6666677777777777777777766520 1 1122333444443333322 34444444554432 23 3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007871 476 LALWGTLLLACRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 505 (586)
...+..+...|...|++++|..+++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456777888899999999999999988764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.1e-09 Score=107.38 Aligned_cols=160 Identities=11% Similarity=0.004 Sum_probs=125.4
Q ss_pred cCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 007871 355 CGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431 (586)
Q Consensus 355 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (586)
.|++++|.+.+++..+ .+...+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL-HPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998774 35778999999999999999999999999884 2335678899999999999999999999
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcC
Q 007871 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNH---QNVTLAEVVVEGLVELK 506 (586)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 506 (586)
++..+ ..+.+...+..++.+|...|++++|.+.+++. ...| +...+..+...+... |++++|...++++++.+
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99988 34557889999999999999999999999887 3334 678888888899999 99999999999999999
Q ss_pred CCCcchHHHHH
Q 007871 507 ADDCGLYVLLS 517 (586)
Q Consensus 507 p~~~~~~~~l~ 517 (586)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99998888776
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-09 Score=86.46 Aligned_cols=98 Identities=9% Similarity=-0.038 Sum_probs=88.0
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+...+..++..+.+.|++++|+..|++. ...| ++..|..+..++...|++++|+..|+++++++|+++..+..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4567888889999999999999999887 3344 7888999999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhCC
Q 007871 521 ADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~~ 540 (586)
...|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.3e-09 Score=89.34 Aligned_cols=155 Identities=12% Similarity=0.055 Sum_probs=92.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH-HhhcC
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL-LSRAG 458 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g 458 (586)
...+...|++++|+..|++..+. -+.+...+..+..++...|++++|...++.+... .|+...+..+... +...+
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhhc
Confidence 33444455555555555544431 1112344455555555555555555555555441 1122222221111 11112
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCCchHHHHHHH
Q 007871 459 ELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD--CGLYVLLSNIYADAGMWEHALRIRK 534 (586)
Q Consensus 459 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 534 (586)
...+|...+++. ...| +...+..+...+...|++++|+..++++++.+|.. +..+..++.++...|+.++|...|+
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 222345555554 2334 57778888888889999999999999999998865 5588999999999999999999988
Q ss_pred HHHh
Q 007871 535 MMRK 538 (586)
Q Consensus 535 ~m~~ 538 (586)
+...
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-08 Score=81.73 Aligned_cols=93 Identities=12% Similarity=0.067 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 523 (586)
.+...+..|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444555555555555555555544 1222 4455555555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHHHh
Q 007871 524 GMWEHALRIRKMMRK 538 (586)
Q Consensus 524 g~~~~A~~~~~~m~~ 538 (586)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.8e-09 Score=87.91 Aligned_cols=97 Identities=11% Similarity=0.002 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+...+..++..+...|++++|+..|++. ... .+...|..+..++...|++++|+..|+++++++|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 5566777788888888888888888876 223 36777888888888889999999999999988899888888899999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007871 521 ADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~ 539 (586)
...|++++|...|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999888888664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.5e-09 Score=82.28 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=97.5
Q ss_pred CCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 007871 404 IPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWG 480 (586)
Q Consensus 404 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 480 (586)
+.|+. ..+......|.+.|++++|++.|++..+ -.+.+...|..++.+|.+.|++++|++.+++. ... .+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 4677788889999999999999999888 34567889999999999999999999999887 333 4688899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 481 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
.+..++...|++++|+..|+++++++|.++.++..+..++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999998887653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-08 Score=95.54 Aligned_cols=218 Identities=12% Similarity=-0.024 Sum_probs=146.1
Q ss_pred CCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007871 285 HGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ-VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363 (586)
Q Consensus 285 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 363 (586)
.|++++|.+++++..+.. +.. +.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 456677777777666531 110 111 45666666665543 345666777777777
Q ss_pred HHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhccCCHHHHHH
Q 007871 364 IFYSMTK-----KN----VISYNVMIAGLGMNGFGEEALKCFAQMETEG---IPKD--DLIFLGVLIACSHSGLATEGYR 429 (586)
Q Consensus 364 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~l~~~~~~~g~~~~A~~ 429 (586)
.|.+..+ .+ ...|+.+...|...|++++|+..|++....- -.+. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 7665542 11 3467778888889999999999998876521 1121 2467788888888 99999999
Q ss_pred HHHHhHHhh---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCChHHHHH
Q 007871 430 IFQSMKRHC---GIEP-KLEHYSCLVDLLSRAGELEQALNIVESMP----MKPN----LALWGTLLLACRNHQNVTLAEV 497 (586)
Q Consensus 430 ~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~~~a~~ 497 (586)
.+++...-. +..+ ...++..++.+|...|++++|++.+++.- ..++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999887621 1111 14678889999999999999999998761 1122 2355566667778899999999
Q ss_pred HHHHHHhcCCCCcch-----HHHHHHHHHhcCCchHHHH
Q 007871 498 VVEGLVELKADDCGL-----YVLLSNIYADAGMWEHALR 531 (586)
Q Consensus 498 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 531 (586)
.++++. ..|..... ...++.++ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999999 88875543 33445544 5677666555
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.7e-08 Score=88.74 Aligned_cols=128 Identities=8% Similarity=-0.029 Sum_probs=97.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (586)
..+...|...|++++|+..|++..+. .| +...+..+..++...|++++|...|+++.+ -.|.+...+..++.+|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 33788889999999999999998884 44 567888899999999999999999999988 34557888888988887
Q ss_pred hcCC--HHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 456 RAGE--LEQALNIVESMPMKPNLA--LWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 456 ~~g~--~~~A~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
..|+ .+.+...++... .|++. .+.....++...|++++|+..|++++++.|++
T Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 6654 445566666653 34433 34445556777899999999999999999874
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.2e-09 Score=110.48 Aligned_cols=153 Identities=10% Similarity=-0.017 Sum_probs=134.8
Q ss_pred HhcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHh
Q 007871 384 GMNGFGEEALKCFAQME--------TEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLS 455 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~--------~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 455 (586)
...|++++|++.+++.. +. .+.+...+..+..++...|++++|...++++.+ ..+.+...+..++.+|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHH
Confidence 77899999999999988 42 233457888899999999999999999999988 34557889999999999
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 456 RAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
..|++++|++.|++. ...| +...+..+..++...|++++ +..|+++++.+|.++.++..++.+|.+.|++++|.+.|
T Consensus 479 ~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999987 3344 67888899999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHhCC
Q 007871 534 KMMRKRK 540 (586)
Q Consensus 534 ~~m~~~~ 540 (586)
++..+..
T Consensus 558 ~~al~l~ 564 (681)
T 2pzi_A 558 DEVPPTS 564 (681)
T ss_dssp HTSCTTS
T ss_pred HhhcccC
Confidence 8876543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.2e-08 Score=91.14 Aligned_cols=135 Identities=13% Similarity=0.084 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHH
Q 007871 405 PKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-MKPNLALWGTLL 483 (586)
Q Consensus 405 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~ 483 (586)
+.+...+..+...+...|++++|...++++.+ ..+.+...+..++.+|...|++++|...++++. ..|+........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 33446777888889999999999999999988 355678899999999999999999999999983 456655444333
Q ss_pred HH-HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 484 LA-CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 484 ~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
.. +...++.+.|+..++++.+.+|+++..+..++.+|...|++++|...++++.+...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 33 77888899999999999999999999999999999999999999999999988543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.6e-07 Score=85.21 Aligned_cols=161 Identities=8% Similarity=-0.101 Sum_probs=121.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHH
Q 007871 378 VMIAGLGMNGFGEEALKCFAQMETEG-IPKDDL----IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYS 448 (586)
Q Consensus 378 ~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ 448 (586)
..+..+...|++++|..++++..... ..|+.. .+..+...+...|++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667888899999999999887732 122211 2334666777888999999999998872111222 23688
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCC-------CC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------cchH
Q 007871 449 CLVDLLSRAGELEQALNIVESMP-------MK-P-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD------CGLY 513 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 513 (586)
.++.+|...|++++|..+++++- .. + ...++..+...|...|++++|+..++++++..+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999988762 11 1 23467788888999999999999999999865332 5689
Q ss_pred HHHHHHHHhcCC-chHHHHHHHHHHh
Q 007871 514 VLLSNIYADAGM-WEHALRIRKMMRK 538 (586)
Q Consensus 514 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 538 (586)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.6e-08 Score=86.68 Aligned_cols=156 Identities=13% Similarity=0.037 Sum_probs=115.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH----------------HHHHhhccCCHHHHHHHHHHhHHhhCCC
Q 007871 379 MIAGLGMNGFGEEALKCFAQMETEGIPKDD-LIFLG----------------VLIACSHSGLATEGYRIFQSMKRHCGIE 441 (586)
Q Consensus 379 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 441 (586)
....+...|++++|+..|++... ..|+. ..+.. +..++...|++++|...+++..+ -.|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCC
Confidence 34455667777777777777666 34433 34555 88899999999999999999998 345
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 442 PKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQ--NVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
.+...+..++.+|...|++++|+..|++. ...| +...+..+...+...| +...+...++++....|. ...+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence 67899999999999999999999999987 3344 6788888888876554 345566666666543222 23566678
Q ss_pred HHHHhcCCchHHHHHHHHHHhC
Q 007871 518 NIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.++...|++++|...|++..+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8889999999999999999764
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-08 Score=101.51 Aligned_cols=147 Identities=13% Similarity=-0.014 Sum_probs=96.1
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 007871 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCF 396 (586)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 396 (586)
.|++++|...++...+.. +.+...+..+...|...|++++|.+.+++..+ .+...+..+...|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 467777888887776654 33566777788888888888888888877653 35667777888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc---CCHHHHHHHHHhC
Q 007871 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA---GELEQALNIVESM 470 (586)
Q Consensus 397 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 470 (586)
++..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..++.++... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8877742 334567777888888888888888888887772 344667777788888888 8888888887766
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.87 E-value=9e-08 Score=89.32 Aligned_cols=163 Identities=9% Similarity=-0.083 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCC--CCC--h
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDD------LIFLGVLIACSHSGLATEGYRIFQSMKRHCGI--EPK--L 444 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~ 444 (586)
.+...+..+...|++++|.+.+++..+.... .. ..+..+...+...|++++|...+++....... .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 4445667788889999999999887774222 22 12344556677888999999999988752111 111 4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------C
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESMP----MKPN-----LALWGTLLLACRNHQNVTLAEVVVEGLVELKAD------D 509 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~ 509 (586)
.+++.++..|...|++++|..+++++- ..|+ ..++..+...|...|++++|+..++++++..+. -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 578889999999999999999988761 1122 257888888999999999999999999886422 1
Q ss_pred cchHHHHHHHHHhcCCchHH-HHHHHHHHh
Q 007871 510 CGLYVLLSNIYADAGMWEHA-LRIRKMMRK 538 (586)
Q Consensus 510 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 538 (586)
..++..++.+|.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788999999999999999 777887654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.87 E-value=5.3e-08 Score=86.84 Aligned_cols=185 Identities=13% Similarity=-0.020 Sum_probs=131.4
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCH----hHHH
Q 007871 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMD--MIVQTALIDMYMKCGSLDEARRIFYSMTK--KNV----ISYN 377 (586)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~----~~~~ 377 (586)
+...+......+...|++++|...|+.+.+...... ...+..+..+|.+.|++++|...|+.+.+ |+. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566677788999999999999999988753222 35677889999999999999999998763 322 2455
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhHHhh
Q 007871 378 VMIAGLGM------------------NGFGEEALKCFAQMETEGIPKDDL-IFLGVLIACSHSGLATEGYRIFQSMKRHC 438 (586)
Q Consensus 378 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 438 (586)
.+..++.. .|++++|+..|+++++. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 57899999999999884 45432 2211110 001111111
Q ss_pred CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 439 GIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 439 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
.....++..|.+.|++++|+..|+++ ...|+ ...+..+..++.+.|++++|+..++.+....|.+..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235678899999999999999887 22343 256778888899999999999999999988887654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.5e-08 Score=84.99 Aligned_cols=131 Identities=11% Similarity=-0.034 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...+++.... .+.+...+..++.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34556677778888888888888766 3567788888888888888888888888888772 35567788888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 454 LSRAGELEQALNIVESM-PMKP-----------------NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
|...|++++|.+.+++. ...| ....+..+..++...|++++|...++++.+..|.+.
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 88888888888888776 1112 226677777778888888888888888888888763
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-08 Score=82.43 Aligned_cols=97 Identities=12% Similarity=-0.042 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+...+..++..+...|++++|...|++. ...| +...|..+..++...|++++|+..|+++++.+|.++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4456667778888888888888888876 2233 6777888888888899999999999999999999999999999999
Q ss_pred HhcCCchHHHHHHHHHHhC
Q 007871 521 ADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~ 539 (586)
...|++++|...+++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999888764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-08 Score=83.80 Aligned_cols=156 Identities=10% Similarity=-0.034 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhc
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIA-CSH 420 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~ 420 (586)
+..+...+...|++++|...|+...+ .+...+..+...+...|++++|+..+++.... .|++.....+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence 44566677788889999998888873 46677888888888899999999988887663 3444333222211 122
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChHHHH
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN---LALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a~ 496 (586)
.+....|...+++..+ ..+.+...+..++.++...|++++|...++++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2233346788888877 34456788888999999999999999998876 44443 557888888899999999999
Q ss_pred HHHHHHHh
Q 007871 497 VVVEGLVE 504 (586)
Q Consensus 497 ~~~~~~~~ 504 (586)
..|++++.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-08 Score=95.02 Aligned_cols=196 Identities=9% Similarity=-0.048 Sum_probs=148.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 007871 320 VGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQM 399 (586)
Q Consensus 320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 399 (586)
.|++++|..+++...+.... . .+...++++.|...|.. ....|...|++++|...|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 56778888888877654221 1 01115788888888765 356788899999999999987
Q ss_pred HHC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhh---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 400 ETE----GIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHC---GIEP-KLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 400 ~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
... |-.+. ..+|..+..+|...|++++|...+++...-. +.+. ...++..+..+|.. |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 652 21111 2478888899999999999999999877621 1111 24678889999988 9999999999876
Q ss_pred C----C--CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 471 P----M--KP--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC------GLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 471 ~----~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
- . .+ ...++..+...+...|++++|+..++++++..|.+. ..+..++.++...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 1 11 146778888899999999999999999999865543 36777888899999999999999998
Q ss_pred H
Q 007871 537 R 537 (586)
Q Consensus 537 ~ 537 (586)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.84 E-value=5.3e-08 Score=81.99 Aligned_cols=127 Identities=10% Similarity=-0.052 Sum_probs=101.4
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACR 487 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 487 (586)
.+..+...+...|++++|...++...+ ..+.+...+..++.++...|++++|.+.+++. .. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456666677778888888888888777 23456777888888888888888888888776 22 336778888888899
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCCchHHHHHHHHHHh
Q 007871 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNI--YADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 488 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 538 (586)
..|++++|...++++.+..|.++..+..+..+ +.+.|++++|...+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998888555444 8889999999999887643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.3e-08 Score=84.48 Aligned_cols=119 Identities=10% Similarity=0.139 Sum_probs=81.2
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCCh--H
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLA-CRNHQNV--T 493 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~-~~~~~~~--~ 493 (586)
...|++++|...++...+ ..+.+...+..++.+|...|++++|...+++. ... .+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 445666777777777666 23445667777777777777777777777665 122 255666666666 6677777 8
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 494 LAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 494 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+|+..++++++.+|.++..+..++.+|...|++++|...++++.+.
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8888888888888888888888888888888888888888877664
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.83 E-value=1e-06 Score=81.44 Aligned_cols=219 Identities=11% Similarity=0.005 Sum_probs=101.3
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--ChhHHHHHHHHHHHcCCCCchhHHHHHHHHH----HhcCCHH
Q 007871 286 GNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG--ALDLGKWIHVFMKRSRITMDMIVQTALIDMY----MKCGSLD 359 (586)
Q Consensus 286 ~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~ 359 (586)
...++|+.+++.++..+ +-+...++.--.++...+ +++++...++.+.....+ +..+++.-..++ ...+
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~--- 121 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN--- 121 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc---
Confidence 33457777777777653 333444555555555555 666666666666665422 222333222222 2220
Q ss_pred HHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHH--HHHHHHHHhHHh
Q 007871 360 EARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLAT--EGYRIFQSMKRH 437 (586)
Q Consensus 360 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~ 437 (586)
..+++++++.+++++.+. -+-+...|+.-.-++...|.++ ++++.++++.+
T Consensus 122 -------------------------~~~~~~~EL~~~~~~l~~-~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~- 174 (306)
T 3dra_A 122 -------------------------NDFDPYREFDILEAMLSS-DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID- 174 (306)
T ss_dssp -------------------------TCCCTHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-
T ss_pred -------------------------ccCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH-
Confidence 003444444444444442 1223334443333333444444 44444444444
Q ss_pred hCCCCChHHHHHHHHHHhhcCC------HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcC--
Q 007871 438 CGIEPKLEHYSCLVDLLSRAGE------LEQALNIVESM-PMK-PNLALWGTLLLACRNHQNV-TLAEVVVEGLVELK-- 506 (586)
Q Consensus 438 ~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~-- 506 (586)
..+-|...|+.-..++.+.|+ ++++++.++++ ... -|...|+.+...+...|+. +.+..+++++.+.+
T Consensus 175 -~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 253 (306)
T 3dra_A 175 -TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKD 253 (306)
T ss_dssp -HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGT
T ss_pred -hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCC
Confidence 123344444444444433333 44444444433 112 2444554444444444442 22334444444443
Q ss_pred -CCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 507 -ADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 507 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
|.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 254 ~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 254 QVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4455555555555555555555555555554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.2e-08 Score=77.79 Aligned_cols=119 Identities=9% Similarity=-0.002 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
...+..++..+.+.|++++|+..|++. ... .+...|..+..++...|++++|+..++++++.+|.++..+..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 445667777888888888888888776 223 367788888888889999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHH
Q 007871 522 DAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKT 582 (586)
Q Consensus 522 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 582 (586)
..|++++|...+++..+.... ....|...++...|.++..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~--------------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAE--------------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH--------------------HHTTTTHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcc--------------------cCCchhHHHHHHHHHHHHHh
Confidence 999999999999888764311 01237777777777776654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-06 Score=85.69 Aligned_cols=367 Identities=11% Similarity=0.004 Sum_probs=208.3
Q ss_pred cCC-CchhHHHHHHHhHhCCCCCCcccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-hhHH
Q 007871 89 QSS-NPQKALSFYVNMKRKGLLVDNYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGH-MGCA 166 (586)
Q Consensus 89 ~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a 166 (586)
+.| +...|..+|+.+... -|. ++++.+..+|+..+.. .|++..|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888877664 232 8899999999988873 4788888888888777664 2344
Q ss_pred HHHhccCC------CCChhhHHHHHHHHH----hCCChhHHHHHHhhCC-CCChhHHHHHHHHHh--hccCCHHHHHHHH
Q 007871 167 RSVFEGSE------IKDLVSWNLVLRGFV----ECGEMGKAREVFDEMP-QKDAISWSIMIDGYR--KKKGDISSARILF 233 (586)
Q Consensus 167 ~~~~~~~~------~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~--~~~g~~~~a~~~~ 233 (586)
..+|+... ..+...|...+..+. ..|+.+.+..+|++.. .|.. ....+...|. ....+...+..++
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHH
Confidence 44554322 235566777666543 2356777777877776 2211 1112211110 1111122222222
Q ss_pred HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhCC--C-----chHHHHHHHHHHHCC
Q 007871 234 EHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE----RNVFSWSIMIDGYAQHG--N-----PKEALYLFREMLCQG 302 (586)
Q Consensus 234 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~A~~~~~~m~~~g 302 (586)
.+.. +.+..|..+++.+.. .+...|...+.--...+ - .+.+..+|++++...
T Consensus 147 ~~~~-----------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~ 209 (493)
T 2uy1_A 147 GDTL-----------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF 209 (493)
T ss_dssp HHHH-----------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHh-----------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC
Confidence 2110 112222222222211 13345555444432221 1 245677888887753
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHH-HHHHHhccC------------
Q 007871 303 VRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDE-ARRIFYSMT------------ 369 (586)
Q Consensus 303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~------------ 369 (586)
+.+...|...+.-+...|+++.|..+++..... +.+...+.. |+...+.++ ...+.+...
T Consensus 210 -p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 210 -YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcc
Confidence 555667777777777888899999999888887 333333322 222111111 111221110
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh-ccCCHHHHHHHHHHhHHhhCCCCChHHHH
Q 007871 370 KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS-HSGLATEGYRIFQSMKRHCGIEPKLEHYS 448 (586)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 448 (586)
......|...+....+.++.+.|..+|++. .. ...+...|......-. ..++.+.|..+|+...+. .+.++..+.
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~~~~~~~ 358 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCCCHHHHH
Confidence 011245666666666778889999999888 32 1234444433222212 234688999999998884 333455666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 449 CLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 449 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
..++.....|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777788899999999999883 3567787777777788998888888888775
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.6e-08 Score=77.85 Aligned_cols=116 Identities=12% Similarity=0.002 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 007871 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLA 485 (586)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 485 (586)
...+..+...+...|++++|...+++..+ ..+.+...+..++.+|...|++++|.+.+++. . .+.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34566666667777777777777777666 23445666777777777777777777777665 2 22356777778888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 525 (586)
+...|++++|+..++++.+.+|.+...+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999999999888888888888887764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=7.3e-08 Score=77.23 Aligned_cols=117 Identities=10% Similarity=-0.061 Sum_probs=95.2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLAC 486 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~ 486 (586)
..+..+...+...|++++|...++++... .+.+...+..++.++...|++++|.+.+++. .. +.+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45666777777888888888888888772 3456777888888888888888888888776 22 23577888888889
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 007871 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 527 (586)
...|++++|...++++.+..|.++..+..++.++.+.|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888763
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.4e-07 Score=80.64 Aligned_cols=174 Identities=8% Similarity=-0.113 Sum_probs=116.7
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-CCHhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 007871 326 GKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK-KNVISYNVMIAGLGMNG----FGEEALKCFAQME 400 (586)
Q Consensus 326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~A~~~~~~m~ 400 (586)
|...|+...+.| ++..+..+...|...+++++|...|++..+ .++..+..+...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444455554443 445555566666666667777666666553 355566666666666 5 7888888888877
Q ss_pred HCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhHHhhCCC-CChHHHHHHHHHHhh----cCCHHHHHHHHHhCC
Q 007871 401 TEGIPKDDLIFLGVLIACSH----SGLATEGYRIFQSMKRHCGIE-PKLEHYSCLVDLLSR----AGELEQALNIVESMP 471 (586)
Q Consensus 401 ~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 471 (586)
+.| +...+..|...|.. .+++++|..+|++..+. +.. .++..+..|..+|.. .+++++|...|++..
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 654 55667777777766 77888888888887662 211 126777788888877 778888888888773
Q ss_pred -CCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhcCC
Q 007871 472 -MKPNLALWGTLLLACRNH-Q-----NVTLAEVVVEGLVELKA 507 (586)
Q Consensus 472 -~~p~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p 507 (586)
..++...+..+...|... | ++++|..+|+++.+.+.
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 224555666676666542 3 88999999998887753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.1e-07 Score=80.96 Aligned_cols=129 Identities=9% Similarity=-0.053 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL 423 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 423 (586)
.+..+...+...|++++|...|++...++...+..+...|...|++++|+..+++..... +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345566777788888888888888877777888888888888888888888888877742 3455677778888888888
Q ss_pred HHHHHHHHHHhHHhhCCCCCh----------------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 007871 424 ATEGYRIFQSMKRHCGIEPKL----------------EHYSCLVDLLSRAGELEQALNIVESM-PMKPN 475 (586)
Q Consensus 424 ~~~A~~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 475 (586)
+++|...++.+.+. .+.+. ..+..++.+|...|++++|.+.+++. ...|+
T Consensus 87 ~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 88888888888772 22222 67777888888888888888888776 44454
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.6e-06 Score=76.47 Aligned_cols=233 Identities=9% Similarity=-0.067 Sum_probs=160.5
Q ss_pred HHHhcCC-HHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCC--CchHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hc
Q 007871 250 GYAKIGD-LVAAQQLFNEMPE--R-NVFSWSIMIDGYAQHG--NPKEALYLFREMLCQGVRPDVISVMGAISAC----AQ 319 (586)
Q Consensus 250 ~~~~~g~-~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~----~~ 319 (586)
+..+.|. .++|++.++.+.. | +..+|+.-..++...| ++++++..++.+.... +-+...|+.--..+ ..
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHh
Confidence 3344454 4789999999875 3 4567888888888888 9999999999999864 33334444333333 23
Q ss_pred c---CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChH--HHHH
Q 007871 320 V---GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE--EALK 394 (586)
Q Consensus 320 ~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~ 394 (586)
. ++++++..+++.+.+.. ..+..+|+.-.-.+.+.|.++ ++++
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~--------------------------------pkny~aW~~R~~vl~~l~~~~~~~EL~ 167 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD--------------------------------PKNHHVWSYRKWLVDTFDLHNDAKELS 167 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHhC--------------------------------CCCHHHHHHHHHHHHHhcccChHHHHH
Confidence 3 45555555555555443 123344444444444555555 7777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCC------HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH-HHHHH
Q 007871 395 CFAQMETEGIPKDDLIFLGVLIACSHSGL------ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ-ALNIV 467 (586)
Q Consensus 395 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~ 467 (586)
.++++.+.. .-|...|+.-...+...|. ++++++.++.++. ..+-|...|+.+...+.+.|+..+ +.++.
T Consensus 168 ~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~ 244 (306)
T 3dra_A 168 FVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFS 244 (306)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHH
Confidence 888887742 3355666666666666665 8888999888888 456688888888888888887544 55566
Q ss_pred HhCC-C----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCCCCcchHHHHHH
Q 007871 468 ESMP-M----KPNLALWGTLLLACRNHQNVTLAEVVVEGLVE-LKADDCGLYVLLSN 518 (586)
Q Consensus 468 ~~~~-~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~~ 518 (586)
.+.- . ..++..+..+...+.+.|+.++|.++++.+.+ .+|.....|...+.
T Consensus 245 ~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 245 LQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 6652 1 34778888888889999999999999999997 78998888876654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-07 Score=75.00 Aligned_cols=115 Identities=16% Similarity=0.113 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 007871 408 DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLA 485 (586)
Q Consensus 408 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 485 (586)
...+..+...+...|++++|...++++.+. .+.+...+..++.++...|++++|..+++++ . .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666777777778888888888877762 3445677777888888888888888888766 1 23466777888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 486 CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 486 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 889999999999999999999999988888888876654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.72 E-value=3e-08 Score=91.80 Aligned_cols=189 Identities=10% Similarity=-0.109 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC 418 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 418 (586)
...+..+...+...|++++|...|+... ..+...|..+...|...|++++|+..+++..+. .+.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 3455566666777777777777777654 235667777777788888888888888877763 123456777777788
Q ss_pred hccCCHHHHHHHHHHhHHhhCC---CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 007871 419 SHSGLATEGYRIFQSMKRHCGI---EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLA 495 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 495 (586)
...|++++|...|++..+...- ......+..+ ...+...+.. .......++......+. .+ ..|++++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l~-~l-~~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYLT-RL-IAAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHHH-HH-HHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHHH-HH-HHHHHHHH
Confidence 8888888888888877652100 0011111111 1122212211 22222333444333332 22 26899999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHHhC
Q 007871 496 EVVVEGLVELKADDCGLYVLLSNIYADA-GMWEHALRIRKMMRKR 539 (586)
Q Consensus 496 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 539 (586)
++.++++.+.+|.+......+...+.+. +++++|.++|.++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999888888888777776 7789999999888653
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-07 Score=89.97 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=97.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC---------------hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK---------------LEHYSCLVDLLSRAGELEQALNIVESM-PMK 473 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 473 (586)
.+..+...+...|++++|...|++.... .+.+ ...|..++.+|.+.|++++|+..++++ ...
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4444455555555555555555555541 1111 467888999999999999999999877 233
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH-HHHHHHHH
Q 007871 474 -PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA-LRIRKMMR 537 (586)
Q Consensus 474 -p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 537 (586)
.+...+..+..++...|++++|+..|+++++++|.++.++..++.++.+.|++++| ...++.|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888889999999999999999999999999999999999999999999999998 45666664
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.7e-07 Score=78.74 Aligned_cols=109 Identities=14% Similarity=0.008 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007871 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLL 484 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 484 (586)
+...+..+...+...|++++|...|++..+ ..+.+...+..++.+|...|++++|+..+++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 345677788888888999999999988887 24457788888888888889999998888876 2334 5778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 485 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
++...|++++|+..|+++++++|.++..+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 888888999999999998888888888665544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.2e-06 Score=78.71 Aligned_cols=158 Identities=13% Similarity=-0.004 Sum_probs=119.8
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC---CH------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 007871 348 LIDMYMKCGSLDEARRIFYSMTKK---NV------ISYNVMIAGLGMNGFGEEALKCFAQMETEGIP-KD----DLIFLG 413 (586)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ 413 (586)
.+..+...|++++|...++...+. +. ..+..+...+...|++++|+..+++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 466778899999999999876531 11 12334666777888999999999999873222 22 236889
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhh----CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHC----GIEP-KLEHYSCLVDLLSRAGELEQALNIVESM-------PMKPN-LALWG 480 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 480 (586)
+..+|...|++++|...++++.+.. +..+ ...++..++.+|.+.|++++|.+++++. ...+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999988521 1122 2347888999999999999999998876 12222 67888
Q ss_pred HHHHHHHhcC-ChHHHHHHHHHHHhc
Q 007871 481 TLLLACRNHQ-NVTLAEVVVEGLVEL 505 (586)
Q Consensus 481 ~l~~~~~~~~-~~~~a~~~~~~~~~~ 505 (586)
.+..++...| ++++|...++++.+.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8888999999 469999999998874
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-07 Score=78.27 Aligned_cols=116 Identities=15% Similarity=0.020 Sum_probs=91.2
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 007871 396 FAQMETEGIPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK 473 (586)
Q Consensus 396 ~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 473 (586)
++++.. ..|+. ..+..+...+...|++++|...|+.+.. ..+.+...|..++.+|...|++++|+..|++. ...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 444443 34433 4667777788889999999999998887 34557888888999999999999999999877 233
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 474 P-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 474 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
| ++..+..+..++...|++++|+..|+++++..|.++.....
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 3 66778888888999999999999999999999988876443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.66 E-value=3.1e-07 Score=82.83 Aligned_cols=123 Identities=11% Similarity=-0.014 Sum_probs=72.4
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhc
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNL----ALWGTLLLACRNH 489 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~~ 489 (586)
+...+...|++++|.++|+.+.. + .|+......+...+.+.|++++|+..|+.....|+. ..+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~--~-~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPV--A-GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCC--T-TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh--c-CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 44455666677777766666654 1 232224445555666677777777777655333322 2455555666677
Q ss_pred CChHHHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 490 QNVTLAEVVVEGLVELK--AD-DCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
|++++|+..|+++.... |. .+......+.++.+.|+.++|...|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77777777777666432 32 3345666666677777777777777766654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=5e-07 Score=72.51 Aligned_cols=99 Identities=11% Similarity=0.024 Sum_probs=89.8
Q ss_pred CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 441 EPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
+.+...+..++..+...|++++|...+++. ...| +...+..+...+...|++++|+..++++.+..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 445678889999999999999999999987 3444 78888899999999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHhC
Q 007871 519 IYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~~ 539 (586)
++...|++++|...+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.9e-07 Score=72.34 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC--CcchHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD--DCGLYVLLSN 518 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 518 (586)
+...+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|+..++++.+..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4456667777888888888888888766 2 2335677788888888899999999999999999998 8899999999
Q ss_pred HHHhc-CCchHHHHHHHHHHhCCCc
Q 007871 519 IYADA-GMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 519 ~~~~~-g~~~~A~~~~~~m~~~~~~ 542 (586)
++... |++++|.+.+++..+....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999988776543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=6.6e-07 Score=69.96 Aligned_cols=92 Identities=17% Similarity=0.010 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 334444444444444444444443 1 11234444444444445555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHHHh
Q 007871 525 MWEHALRIRKMMRK 538 (586)
Q Consensus 525 ~~~~A~~~~~~m~~ 538 (586)
++++|...+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555554443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=5.7e-07 Score=73.88 Aligned_cols=105 Identities=11% Similarity=-0.011 Sum_probs=87.4
Q ss_pred CCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 007871 404 IPKDD-LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWG 480 (586)
Q Consensus 404 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 480 (586)
+.|+. ..+..+...+...|++++|...|+++.. -.|.+...|..++.+|...|++++|++.|++. ...| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34443 4677788888999999999999999988 34567888999999999999999999999887 3334 577888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 481 TLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 481 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
.+..++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 899999999999999999999999988765
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.61 E-value=4.4e-08 Score=79.59 Aligned_cols=63 Identities=13% Similarity=-0.015 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCcchH----HHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVEL-------KADDCGLY----VLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
..|..+..++.+.|++++|+..+++++++ +|+++..| +..+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 37888888888999999999999999998 99999999 99999999999999999999998763
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=6.3e-07 Score=70.07 Aligned_cols=110 Identities=13% Similarity=-0.021 Sum_probs=83.8
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLAC 486 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 486 (586)
..+..+...+...|++++|...++.... ..+.+...+..++.++...|++++|...+++. ...| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4556666677777888888888877776 23446677777888888888888888887766 2223 577778888888
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
...|++++|...++++.+.+|.++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 8999999999999999999999888887776654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.8e-07 Score=73.92 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADA 523 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 523 (586)
.+..++..+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3556778888999999999999887 3334 7888888888899999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHhCC
Q 007871 524 GMWEHALRIRKMMRKRK 540 (586)
Q Consensus 524 g~~~~A~~~~~~m~~~~ 540 (586)
|++++|...+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=3.2e-07 Score=79.85 Aligned_cols=96 Identities=9% Similarity=-0.070 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
..+..++.+|...|++++|+..+++. . .+.+...+..+..++...|++++|+..|+++++.+|.++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777888888889999998888876 2 234677888888899999999999999999999999999999999999999
Q ss_pred cCCchHHH-HHHHHHHhCC
Q 007871 523 AGMWEHAL-RIRKMMRKRK 540 (586)
Q Consensus 523 ~g~~~~A~-~~~~~m~~~~ 540 (586)
.|+..++. ..+..|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888777 5566554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.5e-07 Score=73.38 Aligned_cols=98 Identities=10% Similarity=0.002 Sum_probs=79.1
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 442 PKLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
.+...+..++..+...|++++|...|++. .. +.+...+..+..++...|++++|+..++++++.+|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45667777778888888888888887765 22 23567778888888888888899999999988888888889999999
Q ss_pred HHhcCCchHHHHHHHHHHhC
Q 007871 520 YADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 520 ~~~~g~~~~A~~~~~~m~~~ 539 (586)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999888888764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-07 Score=78.84 Aligned_cols=128 Identities=9% Similarity=0.046 Sum_probs=101.5
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH-HhhcCCH--
Q 007871 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL-LSRAGEL-- 460 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 460 (586)
...|++++|+..+++.... .+.+...+..+..+|...|++++|...++++.+. .+.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHH-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 4567888899999888774 2446678888899999999999999999998883 34567788888888 7789998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHH
Q 007871 461 EQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 461 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
++|...++++ ...| +...+..+...+...|++++|...++++.+..|.++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999877 2334 5778888888899999999999999999999999876543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.4e-07 Score=72.28 Aligned_cols=111 Identities=8% Similarity=-0.073 Sum_probs=85.7
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLAC 486 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 486 (586)
..+..+...+...|++++|...|++..+ -.+.+...+..++.+|...|++++|+..+++. ...| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 4566666777788888888888888777 24556778888888888888888888888776 2333 577788888888
Q ss_pred HhcCChHHHHHHHHHHHhcC------CCCcchHHHHHHHHH
Q 007871 487 RNHQNVTLAEVVVEGLVELK------ADDCGLYVLLSNIYA 521 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 521 (586)
...|++++|+..++++.+.+ |.++.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 89999999999999999988 888777777766543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-06 Score=71.69 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESM-PMKPN----LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
...+..++..+...|++++|.+.+++. ...|+ ...+..+...+...|++++|+..++++.+..|.++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 344444555555555555555555544 23343 3444445555555555555555555555555555555555555
Q ss_pred HHHhcCCchHHHHHHHHHHh
Q 007871 519 IYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 519 ~~~~~g~~~~A~~~~~~m~~ 538 (586)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555666666555555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-07 Score=73.71 Aligned_cols=94 Identities=11% Similarity=0.059 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc-------hHHH
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG-------LYVL 515 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~ 515 (586)
..+..++..+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++++|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566777777788888888777765 2333 5677777777788888888888888888887766543 5666
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 007871 516 LSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 516 l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
++.++...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77778888888888888887755
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.7e-07 Score=77.63 Aligned_cols=129 Identities=13% Similarity=0.002 Sum_probs=60.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhh---CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCC-C----H
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHC---GIEP-KLEHYSCLVDLLSRAGELEQALNIVESMP----MKP-N----L 476 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p-~----~ 476 (586)
.+..+...+...|++++|...+++..... +.++ ...++..++..|...|++++|.+.+++.- ..+ + .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 34444444444444444444444443310 1111 12344445555555555555555544330 011 1 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCc----chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELK--ADDC----GLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
..+..+...+...|++++|+..++++.+.. ..++ .++..++.++...|++++|.+.+++..+
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 234444555556666666666666655432 1111 2245566666666666666666665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.7e-06 Score=80.61 Aligned_cols=162 Identities=11% Similarity=-0.053 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC---CCH------hHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC--HH
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTK---KNV------ISYNVMIAGLGMNGFGEEALKCFAQMETEG---IPKD--DL 409 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~ 409 (586)
.+...+..+...|++++|.+.+....+ ... ..+..+...+...|++++|+..+++..... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566777888899998888875431 111 223445566778889999999999887532 1122 34
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhCC-------CCC-CH
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK-----LEHYSCLVDLLSRAGELEQALNIVESMP-------MKP-NL 476 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~p-~~ 476 (586)
+++.+...|...|++++|...++++.+.....|+ ..++..++.+|...|++++|.+++++.- ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999998731111122 2588889999999999999999988761 111 25
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHHhc
Q 007871 477 ALWGTLLLACRNHQNVTLA-EVVVEGLVEL 505 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 505 (586)
.++..+...+...|++++| ...++++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888889999999999 8888888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.8e-07 Score=80.22 Aligned_cols=136 Identities=12% Similarity=-0.025 Sum_probs=86.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC--hHHHHHHHHHH
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK--LEHYSCLVDLL 454 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~ 454 (586)
-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence 33455566666777777666665552 344334444445667777777777777655431 1 111 23566677778
Q ss_pred hhcCCHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 455 SRAGELEQALNIVESMPMK---P--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~~~~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
...|++++|+..|++.... | ..........++.+.|+.++|...|+++...+|. +.++..|.
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 8888888888888776211 3 2345566666778888888888888888888887 66555553
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.57 E-value=4.5e-07 Score=75.95 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|++++|...+++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 356666777777788888888888888888888888888888888888888888888877765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=68.96 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=87.1
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
...+..++..+...|++++|.+.++++ . .+.+...+..+...+...|++++|+.+++++.+..|.++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888999999999999999999887 2 23467888889999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhC
Q 007871 522 DAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 522 ~~g~~~~A~~~~~~m~~~ 539 (586)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.56 E-value=4.2e-07 Score=74.23 Aligned_cols=107 Identities=15% Similarity=-0.052 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLAC 486 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 486 (586)
..+..+...+...|++++|...|+.+.. ..+.+...|..++.+|...|++++|+..|++. ...| ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3555666677888888888888888877 34557778888888888888888888888876 2233 567777888889
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 487 RNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 487 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
...|++++|+..|+++++..|.++.......
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAA 127 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHH
Confidence 9999999999999999999998887665544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=9.5e-07 Score=70.52 Aligned_cols=98 Identities=11% Similarity=-0.011 Sum_probs=88.1
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 442 PKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
.+...+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|+..++++.+..|.++..+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567888899999999999999999987 2 234678888899999999999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHhC
Q 007871 520 YADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 520 ~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...|++++|...+++..+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999998774
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.7e-07 Score=74.71 Aligned_cols=94 Identities=12% Similarity=-0.077 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+..+...+...|++++|+..|++..... +.+...+..+..+|...|++++|...+++..+ -.+.+...|..++.+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 344445555555555555555555555421 22344555555555555555555555555555 123344555555555
Q ss_pred HhhcCCHHHHHHHHHhC
Q 007871 454 LSRAGELEQALNIVESM 470 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~ 470 (586)
|...|++++|...|++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 55555555555555544
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.1e-07 Score=77.85 Aligned_cols=152 Identities=12% Similarity=0.013 Sum_probs=95.4
Q ss_pred hcCCHHHHHH---HHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHhhccCCHH
Q 007871 354 KCGSLDEARR---IFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMET----EGIPK-DDLIFLGVLIACSHSGLAT 425 (586)
Q Consensus 354 ~~g~~~~a~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~l~~~~~~~g~~~ 425 (586)
..|++++|.+ .+..-.......+..+...+...|++++|...+++... .|..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44332223445666667777777777777777776654 12222 1245666777777888888
Q ss_pred HHHHHHHHhHHhhCCCC-----ChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCh
Q 007871 426 EGYRIFQSMKRHCGIEP-----KLEHYSCLVDLLSRAGELEQALNIVESMP----MKPN----LALWGTLLLACRNHQNV 492 (586)
Q Consensus 426 ~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~~~~l~~~~~~~~~~ 492 (586)
+|...+++......-.+ ....+..++.++...|++++|...+++.- ..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888877665211111 23456777788888888888888877651 1122 23346667778888888
Q ss_pred HHHHHHHHHHHhc
Q 007871 493 TLAEVVVEGLVEL 505 (586)
Q Consensus 493 ~~a~~~~~~~~~~ 505 (586)
++|...++++.+.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888764
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.1e-07 Score=81.10 Aligned_cols=118 Identities=8% Similarity=-0.048 Sum_probs=84.8
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHH
Q 007871 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-N----------------LALWGT 481 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~ 481 (586)
..|+++.+.+.|+.... ........+..++..+...|++++|+..|++. ...| + ...+..
T Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDE--EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ------CCCSGGGCCHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 34445555444443222 11123345666677777777777777777665 1111 1 267888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+..++...|++++|+..++++++.+|.++.++..++.+|...|++++|...+++..+.
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999999998763
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.51 E-value=9.1e-05 Score=74.01 Aligned_cols=313 Identities=11% Similarity=-0.065 Sum_probs=170.5
Q ss_pred hHHHHHHHHHhhccCCHHHHHHHHHhCCC--CChhHHHHHHHHHHhcCC-HHHHHHHHhhCC------CCChhHHHHHHH
Q 007871 210 ISWSIMIDGYRKKKGDISSARILFEHMPI--KDLISWNSMIDGYAKIGD-LVAAQQLFNEMP------ERNVFSWSIMID 280 (586)
Q Consensus 210 ~~~~~ll~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~------~~~~~~~~~l~~ 280 (586)
..|...+..+ - .|+++.+..+|++... |++..|...+....+.++ .+....+|+... ..+...|...+.
T Consensus 16 ~vyer~l~~~-P-~~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 16 AIMEHARRLY-M-SKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHH-H-TTCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHC-C-CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 3455556555 3 3889999999988874 688888888888777764 344455555533 135677777776
Q ss_pred HHHh----CCCchHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccC--------------ChhHHHHHHHHHHHcCCCC
Q 007871 281 GYAQ----HGNPKEALYLFREMLCQGVRPD-V-ISVMGAISACAQVG--------------ALDLGKWIHVFMKRSRITM 340 (586)
Q Consensus 281 ~~~~----~~~~~~A~~~~~~m~~~g~~~~-~-~~~~~l~~~~~~~~--------------~~~~a~~~~~~~~~~~~~~ 340 (586)
.+.. .++.+.+..+|+..+.. ++. . ..|..... +.... .+..|..+++.+...-...
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFEN-FELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHH-HHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 5542 35678899999999873 322 2 22222221 11111 1223344444333211011
Q ss_pred chhHHHHHHHHHHhc--CC-----HHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007871 341 DMIVQTALIDMYMKC--GS-----LDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410 (586)
Q Consensus 341 ~~~~~~~l~~~~~~~--g~-----~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 410 (586)
+...|...+..-... |- .+.+..+|+.+.. .....|...+..+.+.|+.++|..++++.... |....
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~ 247 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMF 247 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSH
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHH
Confidence 233454444432221 10 2345567766552 45677888888888899999999999999886 44322
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhh---C-----C---CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCHHH
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHC---G-----I---EPKLEHYSCLVDLLSRAGELEQALNIVESMPMK-PNLAL 478 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~ 478 (586)
+......+...++ +++.+.... . . .....+|...+..+.+.|..+.|..+|+++..+ .+...
T Consensus 248 l~~~y~~~~e~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v 321 (493)
T 2uy1_A 248 LSLYYGLVMDEEA------VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHV 321 (493)
T ss_dssp HHHHHHHHTTCTH------HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHhhcchhH------HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHH
Confidence 2111111111111 122222110 0 0 001234555566666667777777777776211 13333
Q ss_pred HHHHHHHH-HhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 479 WGTLLLAC-RNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 479 ~~~l~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
|......- ...++.+.|..+|+.+.+..|.++..+...++...+.|+.+.|+.+++++
T Consensus 322 ~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 322 FIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43222221 12335777777777777776776666666666666667777776666664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.50 E-value=2e-06 Score=72.04 Aligned_cols=128 Identities=12% Similarity=-0.048 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++..+ ..+.+...+..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 34566677777888888888888887774 233567777788888888888888888888877 245567778888888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCChHHHHHHHHHHHh
Q 007871 454 LSRAGELEQALNIVESM-PMKP-NLALWGTL--LLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
+...|++++|.+.++++ ...| +...+..+ ...+...|++++|...+++..+
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888776 2223 44444333 3336677888888888877655
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=70.92 Aligned_cols=113 Identities=9% Similarity=-0.143 Sum_probs=85.0
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 007871 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLL 483 (586)
Q Consensus 406 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 483 (586)
.+...+..+...+...|++++|...|+.... ..+.+...+..++.+|...|++++|...+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3556777777788888888888888888777 23456777888888888888888888888776 2233 577788888
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC-----CcchHHHHHHHH
Q 007871 484 LACRNHQNVTLAEVVVEGLVELKAD-----DCGLYVLLSNIY 520 (586)
Q Consensus 484 ~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 520 (586)
.++...|++++|+..++++.+..|. +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999888877 555555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.3e-06 Score=70.08 Aligned_cols=112 Identities=8% Similarity=-0.077 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 007871 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWG 480 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 480 (586)
+...+..+...+...|++++|...|++..+ ..|+ ...+..++.+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345566666666667777777777776655 2233 566667777777777777777777665 2223 567777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 481 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
.+..++...|++++|...++++.+.+|.++.++..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 78888888899999999999999999998888877766543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00019 Score=66.98 Aligned_cols=175 Identities=8% Similarity=-0.086 Sum_probs=109.0
Q ss_pred HHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhc-C-
Q 007871 280 DGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG-ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKC-G- 356 (586)
Q Consensus 280 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 356 (586)
....+.+..++|++++++++..+ +-+...++.--.++...+ .++++..+++.+..... -+..+++.-..++.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCC
Confidence 33444555667888888888763 334445555555555566 47778888877776653 3455555555555554 5
Q ss_pred CHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC--
Q 007871 357 SLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGE--------EALKCFAQMETEGIPKDDLIFLGVLIACSHSGL-- 423 (586)
Q Consensus 357 ~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-- 423 (586)
++++++++++.+.+ .+..+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+...+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence 67777777777764 34455555444444444444 7777888777742 3455667777666666665
Q ss_pred -----HHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC
Q 007871 424 -----ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE 459 (586)
Q Consensus 424 -----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 459 (586)
++++++.+++++. ..+-|...|+.+-..+.+.|+
T Consensus 219 ~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 5777777777776 345566777666666666554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.8e-06 Score=68.85 Aligned_cols=61 Identities=18% Similarity=0.032 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADD---CGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.+..+..++...|++++|+..++++.+..|++ +.++..++.+|...|++++|...++++.+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444555555555555555555555555 44455555555555555555555555544
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-06 Score=67.87 Aligned_cols=94 Identities=11% Similarity=0.104 Sum_probs=74.0
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------cchHHH
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD-------CGLYVL 515 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 515 (586)
..+..++..+...|++++|...+++. . .+.+...+..+...+...|++++|...++++.+..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45666777777777777777777765 1 23356777777778888888888888888888887766 778888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHh
Q 007871 516 LSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 516 l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
++.+|...|++++|...++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999988876
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=5e-05 Score=70.88 Aligned_cols=214 Identities=11% Similarity=0.007 Sum_probs=155.5
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccCC---CCHhHHHHHHHHHHhc-C-ChHHHHH
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG-SLDEARRIFYSMTK---KNVISYNVMIAGLGMN-G-FGEEALK 394 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~-~-~~~~A~~ 394 (586)
+..++|..++..++..+ +-+..+++.--.++...| .+++++.+++.+.. .+..+|+.-...+... + ++++++.
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44567888888888876 335556676666677778 59999999998873 4667787776666665 6 8899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhccCCHH--------HHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC-------
Q 007871 395 CFAQMETEGIPKDDLIFLGVLIACSHSGLAT--------EGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE------- 459 (586)
Q Consensus 395 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 459 (586)
+++++.+. -+-|...|+.-.-++...|.++ ++++.++++.+ ..+-|...|+....++.+.++
T Consensus 147 ~~~k~L~~-dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLP-DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSS-CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccchHH
Confidence 99999984 2445667766665555555555 89999999988 356688889988888888876
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHhcC------CCCcc
Q 007871 460 LEQALNIVESM-PMKP-NLALWGTLLLACRNHQNV--------------------TLAEVVVEGLVELK------ADDCG 511 (586)
Q Consensus 460 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~~ 511 (586)
++++++.++++ ...| |...|+.+-..+.+.|+. .........+.... +.++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 68888888776 3344 788888877777766653 33444444443332 56778
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 512 LYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
++..++++|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 889999999999999999999999864
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.8e-06 Score=85.84 Aligned_cols=96 Identities=16% Similarity=0.019 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYA 521 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 521 (586)
...|..+..+|.+.|++++|+..++++ .. +.+...+..+..+|...|++++|+..|+++++++|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888899999999999999999877 22 3468888899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHH-HHHHHHhC
Q 007871 522 DAGMWEHALR-IRKMMRKR 539 (586)
Q Consensus 522 ~~g~~~~A~~-~~~~m~~~ 539 (586)
+.|++++|.. .+++|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999998864 56666443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.40 E-value=8.6e-07 Score=88.53 Aligned_cols=119 Identities=9% Similarity=-0.058 Sum_probs=96.5
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCh
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNV 492 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~ 492 (586)
...+...|++++|.+.+++..+ ..+.+...+..++.+|.+.|++++|++.+++. ...| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3456678889999999988888 24456788888999999999999999998877 3344 678888888999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCCchHHHHHHHH
Q 007871 493 TLAEVVVEGLVELKADDCGLYVLLSNI--YADAGMWEHALRIRKM 535 (586)
Q Consensus 493 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 535 (586)
++|+..++++.+.+|.++..+..++.+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999888 8899999999999873
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4e-06 Score=66.81 Aligned_cols=110 Identities=4% Similarity=-0.094 Sum_probs=71.8
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCC----HHHHH
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-----MKPN----LALWG 480 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~----~~~~~ 480 (586)
.+..+...+...|++++|...++..... .+.+...+..++.+|...|++++|...+++.- ..++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 4555555666666666666666666652 34455666666666677777777776666551 1122 55667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 481 TLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 481 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
.+...+...|++++|...++++.+..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 777778888888888888888888877 56666666655443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.8e-06 Score=65.52 Aligned_cols=100 Identities=13% Similarity=0.014 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP---NLALWGTLLL 484 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~ 484 (586)
..+..+...+...|++++|...++++.+ ..+.+...+..++.++...|++++|.+.+++. ...| +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQ--LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455566667777777777777777766 23445667777777777778888887777765 2223 4677777777
Q ss_pred HHHhc-CChHHHHHHHHHHHhcCCCCc
Q 007871 485 ACRNH-QNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 485 ~~~~~-~~~~~a~~~~~~~~~~~p~~~ 510 (586)
.+... |++++|+..++++.+..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 78888 888888888888888877664
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.7e-06 Score=65.11 Aligned_cols=105 Identities=11% Similarity=0.038 Sum_probs=75.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh---HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C---HHHHHHHHH
Q 007871 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEPKL---EHYSCLVDLLSRAGELEQALNIVESM-PMKP-N---LALWGTLLL 484 (586)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~---~~~~~~l~~ 484 (586)
.+...+...|++++|...|+.+.+. .+.+. ..+..++.++...|++++|...+++. ...| + ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 4455666777888888888877763 23333 46777788888888888888888766 2223 2 566777788
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 485 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
++...|++++|...++++.+..|+++........+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 88899999999999999999988887666555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=6.6e-06 Score=65.41 Aligned_cols=95 Identities=6% Similarity=-0.039 Sum_probs=51.7
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C----CCCC----HHHHHH
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P----MKPN----LALWGT 481 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----~~p~----~~~~~~ 481 (586)
+..+...+.+.|++++|+..|++..+ -.|.+...|..++.+|...|++++|++.+++. . ..++ ..++..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34444555555555555555555554 12334455555555555555555555555443 0 0111 134555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
+..++...|++++|+..|+++++..|
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 66667777777777777777777655
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-06 Score=67.39 Aligned_cols=98 Identities=11% Similarity=0.060 Sum_probs=67.2
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRN 488 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 488 (586)
+..+...+...|++++|...++++.+ ..+.+...+..++.++...|++++|+..+++. ...| +...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34455566777778888888777777 34456777777778888888888888877766 2334 56677777777888
Q ss_pred cCChHHHHHHHHHHHhcCCCCc
Q 007871 489 HQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 489 ~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
.|++++|+..++++++.+|.++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8888888888888888877654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.31 E-value=5.1e-06 Score=78.90 Aligned_cols=128 Identities=9% Similarity=-0.067 Sum_probs=87.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKD----------------DLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
...+..+...|.+.|++++|+..|++.... .|+ ...+..+..+|.+.|++++|...++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666666777777777777776663 333 36677777777888888888888888777
Q ss_pred hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 007871 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLA-EVVVEGLVE 504 (586)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 504 (586)
-.+.+...+..++.+|...|++++|...|+++ ...| +...+..+..++...|++++| ...++++..
T Consensus 225 --~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 --LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456777778888888888888888888776 2333 566677777777777777777 345555543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.8e-06 Score=82.11 Aligned_cols=149 Identities=12% Similarity=-0.018 Sum_probs=79.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 373 VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 373 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
...+..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 34566667777778888888888888776 3454331 223344444332211 136788888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH-HHhcCCchHH
Q 007871 453 LLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI-YADAGMWEHA 529 (586)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A 529 (586)
+|.+.|++++|+..+++. ...| +...+..+..+|...|++++|+..|+++++++|.++.++..+..+ ....+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988876 2334 678888888889999999999999999999999999998888877 4455677788
Q ss_pred HHHHHHHHhCCC
Q 007871 530 LRIRKMMRKRKI 541 (586)
Q Consensus 530 ~~~~~~m~~~~~ 541 (586)
...|++|.....
T Consensus 319 ~~~~~~~l~~~p 330 (338)
T 2if4_A 319 KEMYKGIFKGKD 330 (338)
T ss_dssp ------------
T ss_pred HHHHHHhhCCCC
Confidence 888888865443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.7e-06 Score=68.76 Aligned_cols=128 Identities=13% Similarity=-0.041 Sum_probs=75.9
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC----HHH
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMP----MKPN----LAL 478 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~----~~~ 478 (586)
+..+...+...|++++|...+++......-.++ ..++..++..+...|++++|.+.+++.. ..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444455555555555444431100011 1345556666666666666666665540 0111 344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC------CCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKA------DDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+..+...+...|++++|...++++.+..+ .....+..++.++...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55666667788888888888888776531 1245677888899999999999999888765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-06 Score=71.65 Aligned_cols=79 Identities=11% Similarity=0.002 Sum_probs=65.2
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc-chHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC-GLYVLLSNI 519 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 519 (586)
+...|..++.+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++++++|.++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4567888999999999999999998877 3334 678888999999999999999999999999999998 556555544
Q ss_pred HH
Q 007871 520 YA 521 (586)
Q Consensus 520 ~~ 521 (586)
..
T Consensus 142 ~~ 143 (162)
T 3rkv_A 142 TE 143 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.7e-07 Score=70.10 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.+..+..++...|++++|+..++++++.+|+++.++..++.+|...|++++|...+++..+
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555555555555555555555555554433
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.29 E-value=4.9e-06 Score=76.77 Aligned_cols=171 Identities=8% Similarity=-0.107 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 007871 407 DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLL 484 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 484 (586)
+...+..+...+...|++++|...|+...+ ..+.+...+..++.+|.+.|++++|...+++. ...| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456788888899999999999999999988 34557888999999999999999999999886 4445 6778888888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEE-------ECCeEe
Q 007871 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIE-------IDGNIK 557 (586)
Q Consensus 485 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~-------~~~~~~ 557 (586)
++...|++++|+..++++.+.+|+++..+...++...+.++ +.. +........+.++.....+ ....+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~ 156 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK---KKR-WNSIEERRIHQESELHSYLTRLIAAERERELE 156 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH---HHH-HHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHH---HHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998876555544444433222 222 2223333333332211000 011222
Q ss_pred EEecCCCCCCChhHHHHHHHHHHHHH
Q 007871 558 EFVSGEIFDVQSEELELVIQSFVKTT 583 (586)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 583 (586)
.+-.....+|....+...+..++...
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~ 182 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKH 182 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHH
T ss_pred HHHhhhccccchhhhhhHHHHHHHHH
Confidence 23333356788888887777766554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00021 Score=66.40 Aligned_cols=191 Identities=8% Similarity=-0.058 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCC-hHHHHHHH
Q 007871 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG--SLDEARRIFYSMTK---KNVISYNVMIAGLGMNGF-GEEALKCF 396 (586)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~ 396 (586)
++++..+++.+.... +-+..+|+.-..++.+.| .+++++.+++.+.+ .|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555543 224444444444444444 35566666655542 344555555445555555 36666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcc--------------CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc-----
Q 007871 397 AQMETEGIPKDDLIFLGVLIACSHS--------------GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA----- 457 (586)
Q Consensus 397 ~~m~~~g~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 457 (586)
+++++.. +-|...|+.....+... +.++++++.+..... -.|-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence 6666532 22334444443333222 335566666666655 2344555554443333333
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHHHHHHHHHH-----HHhcCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 007871 458 ------GELEQALNIVESM-PMKPNLALWGTLLLA-----CRNHQNVTLAEVVVEGLVELKADDCGLYVLLSN 518 (586)
Q Consensus 458 ------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 518 (586)
+.++++++.++++ ...|+. .|..+..+ ....+..++...++.++.+++|....-|..+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 2344555555444 223332 22211111 112345555666666666666665555555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=1e-05 Score=80.07 Aligned_cols=162 Identities=6% Similarity=-0.102 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHhhccCCHHHHHHHHHHhHHh---hCCCC-ChHH
Q 007871 376 YNVMIAGLGMNGFGEEALKCFAQMETE-GIPKDD----LIFLGVLIACSHSGLATEGYRIFQSMKRH---CGIEP-KLEH 446 (586)
Q Consensus 376 ~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~-~~~~ 446 (586)
+..++..|...|++++|.+.+..+... +..++. .+.+.+...+...|+++.|..++...... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 445566666666666666666655431 011111 12233333445567777777777665431 11112 2456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCC----cc
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-------PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELK---ADD----CG 511 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~ 511 (586)
+..++..|...|++++|..++++. ..++ ....+..++..|...|++++|..+++++.... +.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 667777777777777777777654 1122 24456666777777788888888777776643 222 23
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 512 LYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
.+..++..+...|++++|...+.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45556666777778887777666653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00033 Score=65.09 Aligned_cols=178 Identities=10% Similarity=0.008 Sum_probs=133.2
Q ss_pred HHHHHHHHhccC---CCCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC-HHHHHHHH
Q 007871 358 LDEARRIFYSMT---KKNVISYNVMIAGLGMNG--FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGL-ATEGYRIF 431 (586)
Q Consensus 358 ~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~A~~~~ 431 (586)
+++++.+++.+. ..+..+|+.-...+...| .+++++.+++++.+.. +-|...|+.-.-++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777665 357778887777777777 4899999999999852 4466777777777777787 68999999
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 007871 432 QSMKRHCGIEPKLEHYSCLVDLLSRA--------------GELEQALNIVESM-PMKP-NLALWGTLLLACRNH------ 489 (586)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~------ 489 (586)
..++. ..+.|...|+.....+.+. +.++++++.+++. ...| |...|+.+-..+...
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 99998 3566788888877776655 4578888888876 2334 788887666665554
Q ss_pred -----CChHHHHHHHHHHHhcCCCCcchHHHHHHHH---HhcCCchHHHHHHHHHHh
Q 007871 490 -----QNVTLAEVVVEGLVELKADDCGLYVLLSNIY---ADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 490 -----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~m~~ 538 (586)
+.++++++.++++.+..|++..++..++... ...|..+++...+.++.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 4578999999999999999976655554332 246778889999998876
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.25 E-value=5.7e-06 Score=79.47 Aligned_cols=89 Identities=9% Similarity=0.015 Sum_probs=79.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+..+|..++.+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++.+++|.++.++..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4578888999999999999999999887 4445 6788889999999999999999999999999999999999999999
Q ss_pred HhcCCchHHHH
Q 007871 521 ADAGMWEHALR 531 (586)
Q Consensus 521 ~~~g~~~~A~~ 531 (586)
...++.+++..
T Consensus 352 ~~~~~~~~a~k 362 (370)
T 1ihg_A 352 QKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.6e-05 Score=79.32 Aligned_cols=116 Identities=12% Similarity=0.013 Sum_probs=63.0
Q ss_pred HHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHH
Q 007871 350 DMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATE 426 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 426 (586)
..+.+.|++++|.+.|++.. ..+...|..+..+|.+.|++++|+..+++..+. -+.+...+..+..+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 34455666666666666554 234556666666666666666666666666663 12234556666666666666666
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHH--HhhcCCHHHHHHHHH
Q 007871 427 GYRIFQSMKRHCGIEPKLEHYSCLVDL--LSRAGELEQALNIVE 468 (586)
Q Consensus 427 A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 468 (586)
|.+.++++.+. .+.+...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666552 22233344444444 555666666666665
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.19 E-value=9e-06 Score=78.11 Aligned_cols=112 Identities=10% Similarity=-0.049 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP-NLALWGTLLLACR 487 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 487 (586)
..+..+...+.+.|++++|...|+++.+.. +.. ......+++. ...| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 345666666667777777777777665510 000 0000111110 0122 4567888888999
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 488 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
..|++++|+..++++++.+|.++.++..++.+|...|++++|...+++..+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998763
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-06 Score=67.83 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=62.0
Q ss_pred cCCHHHHHHHHHHhHHhhC--CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 007871 421 SGLATEGYRIFQSMKRHCG--IEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAE 496 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~ 496 (586)
.|++++|+..|++..+. + .+.+...+..++.+|...|++++|+..+++. ...| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46666777777776651 2 2334566777777777777777777777766 2223 5667777777788888888888
Q ss_pred HHHHHHHhcCCCCcchHH
Q 007871 497 VVVEGLVELKADDCGLYV 514 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~~~~ 514 (586)
..++++++..|.++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 888888888888776543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.19 E-value=2e-05 Score=78.34 Aligned_cols=64 Identities=13% Similarity=-0.042 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
...|..+..++.+.|++++|+..++++++++|.++.++..++.+|...|++++|...|++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5678888999999999999999999999999999999999999999999999999999999874
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.18 E-value=5.2e-06 Score=82.29 Aligned_cols=129 Identities=11% Similarity=0.014 Sum_probs=94.4
Q ss_pred hhccCCHHHHHHHHHHhHHhh--CCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHC--GIEP----KLEHYSCLVDLLSRAGELEQALNIVESM---------PMKPN-LALWGT 481 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 481 (586)
+..+|++++|+.++++..+.. -+.+ ...+++.|+.+|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 456777888877777765521 1112 2467788888888888888888887765 23343 456788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh-----cCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCC
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVE-----LKADDCGL---YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETG 546 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 546 (586)
|...|...|++++|+.+++++++ .+|++|.+ ...+..++...|++++|...|.++++......+.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~ 471 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPM 471 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 88889999999999999999987 46777654 5567888999999999999999998765444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.18 E-value=5.9e-06 Score=78.48 Aligned_cols=151 Identities=10% Similarity=0.005 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 007871 342 MIVQTALIDMYMKCGSLDEARRIFYSMTK--KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACS 419 (586)
Q Consensus 342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 419 (586)
...+..+...+.+.|++++|...|++... |+... +...|+.+++...+. ...+..+..+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 34567788888999999999999988663 33221 223334444433221 136788888999
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCChHHHH
Q 007871 420 HSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLA-CRNHQNVTLAE 496 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~-~~~~~~~~~a~ 496 (586)
+.|++++|...+++..+ ..+.+...+..++.+|...|++++|...|++. ...|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 34567889999999999999999999999988 44553 4444444444 34556788889
Q ss_pred HHHHHHHhcCCCCcc
Q 007871 497 VVVEGLVELKADDCG 511 (586)
Q Consensus 497 ~~~~~~~~~~p~~~~ 511 (586)
..|.++....|.++.
T Consensus 320 ~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 320 EMYKGIFKGKDEGGA 334 (338)
T ss_dssp ---------------
T ss_pred HHHHHhhCCCCCCCC
Confidence 999999998887653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0001 Score=74.92 Aligned_cols=168 Identities=9% Similarity=-0.032 Sum_probs=131.2
Q ss_pred HHHHHHHHhccCC---CCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC--
Q 007871 358 LDEARRIFYSMTK---KNVISYNVMIAGLGMNGF----------GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSG-- 422 (586)
Q Consensus 358 ~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-- 422 (586)
.++|.+.++.+.. .+..+|+.-...+...|+ +++++..++++.+. -+-+..+|..-.-++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~-~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV-NPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccc
Confidence 4566676666652 344566665555555555 88999999999884 2345577887777788888
Q ss_pred CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----------
Q 007871 423 LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG-ELEQALNIVESM-PMKP-NLALWGTLLLACRNH---------- 489 (586)
Q Consensus 423 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 489 (586)
+++++++.++++.+ ..+-+...|+.-..++.+.| .++++++.++++ ...| +...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 77999999999998 35668888888888888888 899999999888 4444 788888777776552
Q ss_pred ----CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 007871 490 ----QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528 (586)
Q Consensus 490 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 528 (586)
+.++++++.+++++..+|.+..+|..+..++.+.|++++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999988665
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.5e-05 Score=66.11 Aligned_cols=132 Identities=11% Similarity=-0.047 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC----ChH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGI-PKDD----LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP----KLE 445 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~ 445 (586)
++..+...+...|++++|+..+++...... .++. .++..+...+...|++++|...+++......-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555566666666666655543100 0111 3555666666777777777777776654211111 134
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM-------PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELK 506 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 506 (586)
.+..++.++...|++++|.+.+++. ...+ ....+..+...+...|++++|...++++.+..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666777777778887777777655 1111 13455666777888888888888888887653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.12 E-value=7.3e-06 Score=66.55 Aligned_cols=107 Identities=14% Similarity=0.035 Sum_probs=73.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHhHHhhCCCC-----C-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-------CC
Q 007871 413 GVLIACSHSGLATEGYRIFQSMKRHCGIEP-----K-----LEHYSCLVDLLSRAGELEQALNIVESM-PM-------KP 474 (586)
Q Consensus 413 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p 474 (586)
.....+...|++++|...|++..+-....| + ...|..+..++.+.|++++|+..+++. .. .|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 334444555555555555555554110000 1 227777777778888887777777655 23 66
Q ss_pred C-HHHH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 007871 475 N-LALW----GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNI 519 (586)
Q Consensus 475 ~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 519 (586)
+ ...| .....++...|++++|+..|++++++.|.+..+...+..+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4 5677 8888999999999999999999999999998877666543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.10 E-value=5.5e-05 Score=74.73 Aligned_cols=159 Identities=9% Similarity=-0.025 Sum_probs=118.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC
Q 007871 380 IAGLGMNGFGEEALKCFAQMETEGIPKD----------------DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK 443 (586)
Q Consensus 380 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 443 (586)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+.+..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445677888888888888876422111 124778899999999999999999998773332222
Q ss_pred h----HHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----
Q 007871 444 L----EHYSCLVDLLSRAGELEQALNIVESM-------PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELK----- 506 (586)
Q Consensus 444 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 506 (586)
. .+.+.+...+...|++++|.++++.. ...+ -..++..+...+...|++++|..+++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23445556667789999999988765 2233 35677888888999999999999999988742
Q ss_pred -CCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 507 -ADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 507 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 23345788899999999999999999998764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.09 E-value=1.7e-05 Score=59.91 Aligned_cols=66 Identities=21% Similarity=0.169 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 474 PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 474 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.+...+..+...+...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367778888888999999999999999999999999999999999999999999999999988654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=8.6e-06 Score=62.75 Aligned_cols=93 Identities=12% Similarity=0.033 Sum_probs=74.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC------cchHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD------CGLYV 514 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 514 (586)
+...+..++..+...|++++|++.+++. ... .+...+..+..++...|++++|+..++++++.+|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888888888888888776 223 367788888888999999999999999999999998 77888
Q ss_pred HHHHHHHhcCCchHHHHHHHH
Q 007871 515 LLSNIYADAGMWEHALRIRKM 535 (586)
Q Consensus 515 ~l~~~~~~~g~~~~A~~~~~~ 535 (586)
.++.++...|++++|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777655543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.4e-05 Score=57.55 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+...+..++..+...|++++|...+++. .. +.+...+..+..++...|++++|+..++++.+.+|.++..+..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456667777788888888888887766 22 235677778888888889999999999999999999888888888887
Q ss_pred HhcC
Q 007871 521 ADAG 524 (586)
Q Consensus 521 ~~~g 524 (586)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.4e-05 Score=76.42 Aligned_cols=114 Identities=11% Similarity=-0.026 Sum_probs=89.3
Q ss_pred HHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCc---chH
Q 007871 452 DLLSRAGELEQALNIVESM---------PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVEL-----KADDC---GLY 513 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~~ 513 (586)
..+..+|++++|+.++++. +..|+ ..+++.+...|...|++++|+.+++++++. +|++| ..+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999988765 12333 467888999999999999999999999873 56665 458
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHHH
Q 007871 514 VLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTT 583 (586)
Q Consensus 514 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 583 (586)
+.|+.+|..+|++++|..++++..+-... ..| ..||.++++...|.+.+..+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~ 448 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLV-----------------THG-PSHPITKDLEAMRMQTEMEL 448 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------HhC-CCChHHHHHHHHHHHHHHHH
Confidence 88999999999999999999998653221 122 34999999999888887544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.94 E-value=5e-05 Score=58.93 Aligned_cols=64 Identities=14% Similarity=0.041 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+...+..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|...+++..+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666777777777777777777777777777777777777777777777777777777655
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00016 Score=58.16 Aligned_cols=90 Identities=9% Similarity=-0.099 Sum_probs=49.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh---
Q 007871 450 LVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD--- 522 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--- 522 (586)
|...|...+..++|.+.|++.....++.....+...|.. .+++++|..+|+++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444444455555444222344444455555544 55666666666666554 355566666666666
Q ss_pred -cCCchHHHHHHHHHHhCCC
Q 007871 523 -AGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 523 -~g~~~~A~~~~~~m~~~~~ 541 (586)
.+++++|..++++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6666666666666666554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00011 Score=54.01 Aligned_cols=70 Identities=7% Similarity=-0.014 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 473 KPNLALWGTLLLACRNHQN---VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 473 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
++++..+..+..++...++ .++|..+++++++.+|+++..+..++..+.+.|++++|+.+|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3577788888888654444 799999999999999999999999999999999999999999999886443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=8.2e-05 Score=57.07 Aligned_cols=66 Identities=8% Similarity=-0.058 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
+...+..+...+...|++++|+..++++++..|.++.++..++.+|...|++++|...+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456778888889999999999999999999999999999999999999999999999999998753
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=1.7e-05 Score=64.17 Aligned_cols=96 Identities=7% Similarity=-0.013 Sum_probs=66.1
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVE 500 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 500 (586)
.+.+++|.+.++...+ -.+.+...|..+..++...++++.+.+.++ .+++|+..|+
T Consensus 15 ~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~----------------------~~~eAi~~le 70 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQ----------------------MIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHH----------------------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHh----------------------HHHHHHHHHH
Confidence 3455566666666555 233455555555555555554443322221 3679999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcC-----------CchHHHHHHHHHHhCC
Q 007871 501 GLVELKADDCGLYVLLSNIYADAG-----------MWEHALRIRKMMRKRK 540 (586)
Q Consensus 501 ~~~~~~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~ 540 (586)
++++++|+++.+|+.++.+|...| ++++|.+.|++..+..
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 999999999999999999998875 8999999999988743
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.3e-05 Score=75.24 Aligned_cols=105 Identities=13% Similarity=0.028 Sum_probs=78.3
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCc---chHHHHH
Q 007871 456 RAGELEQALNIVESM---------PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVE-----LKADDC---GLYVLLS 517 (586)
Q Consensus 456 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~ 517 (586)
..|++++|+.++++. +..|+ ..+++.+..+|...|++++|+.+++++++ .+|++| ..++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356777777777654 12232 46678888889999999999999999887 356655 4588899
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHH
Q 007871 518 NIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQS 578 (586)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (586)
.+|..+|++++|..++++..+-... ..| ..||.+++++..|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV-----------------AHG-KDHPYISEIKQEIES 432 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTCHHHHHHHHHHHC
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH-----------------HcC-CCChHHHHHHHHHhc
Confidence 9999999999999999998663221 122 348999998888764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0002 Score=52.42 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|...+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35667778888999999999999999999999999999999999999999999999999998764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00042 Score=70.44 Aligned_cols=152 Identities=11% Similarity=0.058 Sum_probs=125.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCC----------HHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 386 NGFGEEALKCFAQMETEGIPKDD-LIFLGVLIACSHSGL----------ATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
....++|++.++++.. ..|+. ..|+.-..++...|+ ++++...++.+.+ ..+-+..+|..-..++
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3445788999999998 56654 566666666666666 8999999999998 4566888999888889
Q ss_pred hhcC--CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc------
Q 007871 455 SRAG--ELEQALNIVESM-P-MKPNLALWGTLLLACRNHQ-NVTLAEVVVEGLVELKADDCGLYVLLSNIYADA------ 523 (586)
Q Consensus 455 ~~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------ 523 (586)
.+.| +++++++.++++ . ...+...|+.-...+...| .++++++.++++++.+|.|..+|...+.++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9999 779999999988 2 3347889988888888888 899999999999999999999999999998874
Q ss_pred --------CCchHHHHHHHHHHhCCC
Q 007871 524 --------GMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 524 --------g~~~~A~~~~~~m~~~~~ 541 (586)
+++++|.+++++......
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCC
Confidence 567889888888876443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=8.3e-05 Score=72.55 Aligned_cols=116 Identities=15% Similarity=0.120 Sum_probs=87.2
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCc---ch
Q 007871 451 VDLLSRAGELEQALNIVESM---------PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVEL-----KADDC---GL 512 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~p~~~---~~ 512 (586)
+..+.+.|++++|+.++++. +..| ...+++.++.+|...|++++|+.+++++++. +|++| ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455778888888888755 1112 2456788888899999999999999998873 45555 45
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHHHh
Q 007871 513 YVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTI 584 (586)
Q Consensus 513 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 584 (586)
++.|+.+|..+|++++|..++++..+--.. ..| ..||.+++++..|.+..-.++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------THG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hcC-CCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999998663211 122 349999999999998876654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00018 Score=55.62 Aligned_cols=80 Identities=10% Similarity=-0.006 Sum_probs=50.2
Q ss_pred HHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 427 GYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMK-PNLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 427 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
|...+++..+ ..+.+...+..++.+|...|++++|+..+++. ... .+...|..+..++...|++++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555554 23445566666666677777777777766655 222 3456666677777777777777777777777
Q ss_pred cCCC
Q 007871 505 LKAD 508 (586)
Q Consensus 505 ~~p~ 508 (586)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00087 Score=53.79 Aligned_cols=113 Identities=9% Similarity=-0.072 Sum_probs=93.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh----cCCHH
Q 007871 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR----AGELE 461 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 461 (586)
.+++++|+.+|++..+.| .|... +...|...+.+++|.++|++..+. -+...+..|...|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346789999999999887 34433 777788888899999999999883 467788889999988 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC
Q 007871 462 QALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 462 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 507 (586)
+|.+.|++....-++..+..+...|.. .+++++|..+++++.+.+.
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988545678888888888888 8999999999999988753
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.68 E-value=4.2e-05 Score=61.92 Aligned_cols=126 Identities=15% Similarity=0.008 Sum_probs=88.8
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCH----------HHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLA----------TEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
.+.+.+++|.+.+++..+. -+.+...|..+..++...+++ ++|+..|++.++ -.+.+...|..++.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l-~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS-NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 4667889999999999984 234667888888888888765 588888888877 234466778888888
Q ss_pred HhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 007871 454 LSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIR 533 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 533 (586)
|...|.+ .|+.. ...|++++|+..|+++++++|++......+- ..++|.++.
T Consensus 90 y~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~-------~~~ka~el~ 141 (158)
T 1zu2_A 90 YTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLE-------MTAKAPQLH 141 (158)
T ss_dssp HHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH-------HHHTHHHHH
T ss_pred HHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHHHHH-------HHHhCHhcc
Confidence 8777654 34331 1237899999999999999999875544433 234555555
Q ss_pred HHHHhCC
Q 007871 534 KMMRKRK 540 (586)
Q Consensus 534 ~~m~~~~ 540 (586)
-.+...+
T Consensus 142 ~~~~~~~ 148 (158)
T 1zu2_A 142 AEAYKQG 148 (158)
T ss_dssp HHHHHSS
T ss_pred Ccccccc
Confidence 5555443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00053 Score=51.16 Aligned_cols=64 Identities=22% Similarity=0.233 Sum_probs=43.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchH
Q 007871 450 LVDLLSRAGELEQALNIVESM-PMKP-NLA-LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLY 513 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 513 (586)
.+..+...|++++|.+.+++. ...| +.. .+..+..++...|++++|+..|+++++.+|.++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455666777777777777765 2233 455 666666777777777777777777777777777665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.023 Score=43.48 Aligned_cols=141 Identities=9% Similarity=0.026 Sum_probs=103.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
+.-.|..++..++..+... ..+..-+++++--....-+=+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 4556788888888887766 334556666666555555555566666665442111 24566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 463 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
....+-.+. .+....+..+..+...|.-+.-.+++..+..-++.+|.+...++.+|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666653 355667778888999999999999999987778899999999999999999999999999999999985
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00075 Score=50.55 Aligned_cols=66 Identities=12% Similarity=0.020 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 442 PKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 442 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
.+...+..++.+|...|++++|+..|++. ...| +...|..+..+|...|++++|+..+++++++.|
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 34555666666666666666666666655 2222 445566666666677777777777776666543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0022 Score=47.64 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=31.2
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhhCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHCGIEPKLE-HYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
...+...|++++|...++++.+ ..+.+.. .+..++.+|...|++++|.+.|++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445556666666666666655 2233445 5566666666666666666666554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0017 Score=63.14 Aligned_cols=95 Identities=15% Similarity=0.066 Sum_probs=64.9
Q ss_pred ccCCHHHHHHHHHHhHHhh--CCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 007871 420 HSGLATEGYRIFQSMKRHC--GIEP----KLEHYSCLVDLLSRAGELEQALNIVESM---------PMKPN-LALWGTLL 483 (586)
Q Consensus 420 ~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 483 (586)
..|++++|..++++..+.. -+.| ...+++.|+.+|...|++++|+.++++. +..|+ ..+++.+.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3466777777777655421 1122 2356777888888888888888877765 23343 45677888
Q ss_pred HHHHhcCChHHHHHHHHHHHh-----cCCCCcchHH
Q 007871 484 LACRNHQNVTLAEVVVEGLVE-----LKADDCGLYV 514 (586)
Q Consensus 484 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 514 (586)
..|...|++++|+.+++++++ .+|++|.+-.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 889999999999999998887 3677775443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.004 Score=49.74 Aligned_cols=92 Identities=15% Similarity=0.041 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHH
Q 007871 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAG---ELEQALNIVESM-PMK-P--NLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 422 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~ 494 (586)
+....+.+-|.+... .-+++..+.-.+..++.+.+ +.++++.++++. ... | +...+..+..++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 345566667766655 23467778788888888877 566888888766 222 4 35666677777888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHH
Q 007871 495 AEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 495 a~~~~~~~~~~~p~~~~~~~~ 515 (586)
|.++++.+++.+|+|..+...
T Consensus 90 A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHH
Confidence 888888888888887765544
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.016 Score=54.07 Aligned_cols=138 Identities=5% Similarity=-0.115 Sum_probs=64.8
Q ss_pred CCHhHHHHHHHHH--HhcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc---cC-----CHHHHHHHHHHhHH
Q 007871 371 KNVISYNVMIAGL--GMNG---FGEEALKCFAQMETEGIPKDD-LIFLGVLIACSH---SG-----LATEGYRIFQSMKR 436 (586)
Q Consensus 371 ~~~~~~~~l~~~~--~~~~---~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~---~g-----~~~~A~~~~~~~~~ 436 (586)
.+...|...+.+. ...+ ...+|..+|++.++ ..|+. ..+..+..+|.. .+ ........+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 3555666655553 3333 34678888888887 56653 344444433320 00 00000011111100
Q ss_pred hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 437 HCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 437 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
....+.+..+|..+...+...|++++|...++++ ...|+...|..+...+.-.|++++|...++++..++|..+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 0012334455555555455555555555555554 2234444444444445555555555555555555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0033 Score=61.27 Aligned_cols=101 Identities=12% Similarity=-0.035 Sum_probs=71.7
Q ss_pred HHHhhccCCHHHHHHHHHHhHHhh--CCCC----ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 007871 415 LIACSHSGLATEGYRIFQSMKRHC--GIEP----KLEHYSCLVDLLSRAGELEQALNIVESM---------PMKPN-LAL 478 (586)
Q Consensus 415 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 478 (586)
+..+..+|++++|..++++..+.. -+.| ...+++.++.+|...|++++|+.++++. +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556778888888887776521 1222 2457778888888888888888887765 23343 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh-----cCCCCcchHHH
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVE-----LKADDCGLYVL 515 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~ 515 (586)
++.+...|...|++++|+.+++++++ .+|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 77888889999999999999999887 46887765443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.49 Score=48.08 Aligned_cols=114 Identities=9% Similarity=-0.057 Sum_probs=66.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 007871 387 GFGEEALKCFAQMETEGIPKDDL----IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 387 ~~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
.+.+.|...|......+ ..+.. ....+.......+...++...+..... ...+.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 36788888887776432 22322 222333334445534555556655433 22333344455555567788888
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 007871 463 ALNIVESMPMKP--NLALWGTLLLACRNHQNVTLAEVVVEGLVE 504 (586)
Q Consensus 463 A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 504 (586)
|...|+.++..+ ...-..-+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888885432 233334455566777888888888888764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0071 Score=56.42 Aligned_cols=136 Identities=10% Similarity=0.048 Sum_probs=94.7
Q ss_pred CCCCHHHHHHHHHHh--hcc---CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh---cC-C-------HHHHHHHH
Q 007871 404 IPKDDLIFLGVLIAC--SHS---GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR---AG-E-------LEQALNIV 467 (586)
Q Consensus 404 ~~p~~~~~~~l~~~~--~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~-------~~~A~~~~ 467 (586)
.+.+...|...+++. ... .+..+|..+|+++.+ ..|-....+..+..+|.- .+ . ...+....
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 455666777776654 333 345789999999988 234455666655555531 11 1 11222222
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 468 ESMP-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 468 ~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
..+. .+.++..+..+...+...|++++|...++++++++| +...|..++.++.-.|++++|.+.|++....+..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 2232 345778888887777778999999999999999996 5667788999999999999999999998876543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.79 E-value=2e-05 Score=74.65 Aligned_cols=259 Identities=10% Similarity=0.020 Sum_probs=143.7
Q ss_pred cccHHHHHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCCC--CChhhHHHHHHHHH
Q 007871 112 NYTYPFVLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSEI--KDLVSWNLVLRGFV 189 (586)
Q Consensus 112 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~ 189 (586)
+..|..|..+....+.+.+|.+-| ++ .-|+..|..+|....+.|.+++-...++-..+ +++..=+.|+-+|+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---Ik---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IK---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 127 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CC---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---Hh---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345666666666666555554322 11 23455566666666666666666666644332 24445556666666
Q ss_pred hCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 007871 190 ECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE 269 (586)
Q Consensus 190 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 269 (586)
+.++..+-.+++. .||......+.+.| ...|.++.|+-+|..+.. |..|...+.+.|+++.|.+.-.+ .
T Consensus 128 k~~rL~elEefl~---~~N~A~iq~VGDrc-f~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK--A 196 (624)
T 3lvg_A 128 KTNRLAELEEFIN---GPNNAHIQQVGDRC-YDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK--A 196 (624)
T ss_dssp TSCSSSTTTSTTS---CCSSSCTHHHHHHH-HHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT--C
T ss_pred hhCcHHHHHHHHc---CCCcccHHHHHHHH-HHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh--c
Confidence 6666554333322 45555555555555 556666666555554431 22222333344444444322111 1
Q ss_pred CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHH
Q 007871 270 RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI 349 (586)
Q Consensus 270 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 349 (586)
.++.+|-.+-.+|...+.+..|.-.--.++- .|| ....++..|...|-+++...+++.-... -+....+|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 4667888888888888887776554433331 121 1233555677778888777777765532 134566777777
Q ss_pred HHHHhcCCHHHHHHHHhccCC----C-------CHhHHHHHHHHHHhcCChHHHHH
Q 007871 350 DMYMKCGSLDEARRIFYSMTK----K-------NVISYNVMIAGLGMNGFGEEALK 394 (586)
Q Consensus 350 ~~~~~~g~~~~a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~~ 394 (586)
-.|++- +.++..+.++..-. | ....|.-++-.|.+..++|.|..
T Consensus 271 ILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 777765 34455544443221 2 34467778888888888887653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0054 Score=49.02 Aligned_cols=76 Identities=17% Similarity=0.103 Sum_probs=33.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccC---CHHHHHHHHHHhHHhhCCCC--ChHHHHHHHHHHhhcCCHHHHHHH
Q 007871 392 ALKCFAQMETEGIPKDDLIFLGVLIACSHSG---LATEGYRIFQSMKRHCGIEP--KLEHYSCLVDLLSRAGELEQALNI 466 (586)
Q Consensus 392 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 466 (586)
+.+-|.+....|. ++..+...+..++.+.+ +.+++..+++...+. . .| ....+-.+.-+|.+.|++++|.++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3333443333332 44444444444444444 334555555555442 1 12 233344444445555555555555
Q ss_pred HHhC
Q 007871 467 VESM 470 (586)
Q Consensus 467 ~~~~ 470 (586)
++.+
T Consensus 94 ~~~l 97 (152)
T 1pc2_A 94 VRGL 97 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.13 Score=54.95 Aligned_cols=150 Identities=15% Similarity=0.090 Sum_probs=78.7
Q ss_pred HhCCChhHHHH-HHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 007871 189 VECGEMGKARE-VFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEM 267 (586)
Q Consensus 189 ~~~g~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 267 (586)
...+++++|.+ ++..+. +......++..+ .+.|..+.|.++.+. .. .-.......|+++.|.++.+.+
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l-~~~~~~~~a~~~~~~-----~~---~~f~~~l~~~~~~~A~~~~~~~ 678 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFL-EGQEYYEEALNISPD-----QD---QKFELALKVGQLTLARDLLTDE 678 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHH-HHTTCHHHHHHHCCC-----HH---HHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHH-HhCCChHHheecCCC-----cc---hheehhhhcCCHHHHHHHHHhh
Confidence 34555665555 432221 011123333333 555666665554421 11 1123345667777777776665
Q ss_pred CCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHH
Q 007871 268 PERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347 (586)
Q Consensus 268 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 347 (586)
. +...|..+...+.+.++++.|...|..+.. |..+...+...++.+....+.+.....|- ++.
T Consensus 679 ~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~ 741 (814)
T 3mkq_A 679 S--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNL 741 (814)
T ss_dssp C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHH
T ss_pred C--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHH
Confidence 3 446777777777778888887777776542 23334444445555555544444444331 233
Q ss_pred HHHHHHhcCCHHHHHHHHh
Q 007871 348 LIDMYMKCGSLDEARRIFY 366 (586)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~ 366 (586)
...+|.+.|++++|.+++.
T Consensus 742 A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 742 AFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3344555666666665554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0096 Score=44.73 Aligned_cols=71 Identities=13% Similarity=0.047 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-----P----MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
.-.++..+...|+++.|...++.+ . ..+....+..+..++.+.|+++.|..+++++.+..|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 334555555555555555555443 0 1234677788888899999999999999999999999987766654
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0011 Score=63.25 Aligned_cols=233 Identities=13% Similarity=0.094 Sum_probs=128.4
Q ss_pred ChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHHH
Q 007871 43 EPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKAC 122 (586)
Q Consensus 43 ~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 122 (586)
.+.+|..+-. +..+. |...+|++-|= ...|+..|..++.+..+.|.+++-+.++...++..- ++..=+.|+-+|
T Consensus 53 ~p~VWs~Lgk-AqL~~-~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ay 126 (624)
T 3lvg_A 53 EPAVWSQLAK-AQLQK-GMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFAL 126 (624)
T ss_dssp CCCCSSSHHH-HTTTS-SSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHH
T ss_pred CccHHHHHHH-HHHcc-CchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHH
Confidence 3445555555 55555 66666655442 233445566777777777777777777765554422 333334667777
Q ss_pred hccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC------------------------CCCh
Q 007871 123 GVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE------------------------IKDL 178 (586)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~------------------------~~~~ 178 (586)
++.++..+.++.+. .|+..-.....+-|...|.++.|.-+|..+. ..++
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77766655443321 2455555555566666666666665554332 1255
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCC-CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhc
Q 007871 179 VSWNLVLRGFVECGEMGKAREVFDEMP-QKDAISWSIMIDGYRKKKGDISSARILFEHMPI---KDLISWNSMIDGYAKI 254 (586)
Q Consensus 179 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 254 (586)
.+|-.+-.+|+..+++.-|.-.--.+. .+|. ...++..| ...|.+++-+.+++.... .....|+-|.-.|++-
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~Y-E~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYY-QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSS-STTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHH-HhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 677777777877777665544322222 2211 01123334 566777777777766552 2455566666666654
Q ss_pred CCHHHHHHHHhhCCC----C-------ChhHHHHHHHHHHhCCCchHHH
Q 007871 255 GDLVAAQQLFNEMPE----R-------NVFSWSIMIDGYAQHGNPKEAL 292 (586)
Q Consensus 255 g~~~~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~ 292 (586)
+.++..+.++.... | ....|.-++-.|.+-.+++.|.
T Consensus 277 -~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 -KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp -CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 34444444443322 2 3345666666666666666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.086 Score=56.43 Aligned_cols=130 Identities=10% Similarity=0.050 Sum_probs=77.2
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChH
Q 007871 311 MGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGE 390 (586)
Q Consensus 311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 390 (586)
..++..+...|..+.|.++.+. . ..-+......|+++.|.++.+.+ .+...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHH
Confidence 4555555666666666655421 1 11133445678888888887665 35678888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 391 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
.|.+.|.++.. |..+...+...|+.+...++-+..... | -++....+|.+.|++++|++++.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88888887644 334444444466666555444444331 1 1233334455566666666665554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.008 Score=53.63 Aligned_cols=86 Identities=10% Similarity=0.013 Sum_probs=64.7
Q ss_pred HHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CCchHH
Q 007871 461 EQALNIVESM-PMKPN---LALWGTLLLACRN-----HQNVTLAEVVVEGLVELKADD-CGLYVLLSNIYADA-GMWEHA 529 (586)
Q Consensus 461 ~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A 529 (586)
..|...+++. ...|+ ...|..+...|.. -|+.++|+++|+++++++|+. +..+...++.++.. |++++|
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 4455555544 34454 4566666666766 489999999999999999975 99999999998884 899999
Q ss_pred HHHHHHHHhCCCccCCC
Q 007871 530 LRIRKMMRKRKIKKETG 546 (586)
Q Consensus 530 ~~~~~~m~~~~~~~~~~ 546 (586)
.+++++........+|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99999998877664343
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.015 Score=43.61 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELK-------ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+..-...+...+...|++..|..+++.+.+.. +..+.++..++.+|.+.|+++.|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44455677888999999999999999999853 345678999999999999999999999999763
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.028 Score=41.02 Aligned_cols=70 Identities=10% Similarity=-0.027 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 441 EPKLEHYSCLVDLLSRAGE---LEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
+.++..+..++.++...++ .++|..++++. ...| ++.....+...+...|++++|+..|+++.+.+|+++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 4566667777777654444 57777777766 3334 566666667777888888888888888888887743
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.42 Score=39.19 Aligned_cols=102 Identities=11% Similarity=0.079 Sum_probs=53.7
Q ss_pred HHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 007871 352 YMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431 (586)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (586)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+.-.++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666665554 3455666666666666666666666665433 233333344455555444433
Q ss_pred HHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007871 432 QSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471 (586)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (586)
+....+ | -++.-..++.-.|+++++.++|.+.+
T Consensus 84 ~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 333321 1 12333344555666666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.039 Score=42.31 Aligned_cols=92 Identities=16% Similarity=0.034 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCChHH
Q 007871 422 GLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ---ALNIVESM-PMK-P--NLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 422 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~ 494 (586)
.....+.+-|...... +. ++..+--.+..++.+..+..+ ++.+++.. ... | .......+..++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444555555555442 33 666666677777777776655 67777665 222 3 23445556666777888888
Q ss_pred HHHHHHHHHhcCCCCcchHHH
Q 007871 495 AEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 495 a~~~~~~~~~~~p~~~~~~~~ 515 (586)
|.++++.+++..|.|..+...
T Consensus 93 A~~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHH
Confidence 888888888888877655443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.13 Score=39.48 Aligned_cols=63 Identities=13% Similarity=0.058 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhhccCCHHH---HHHHHHHhHHhhCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 406 KDDLIFLGVLIACSHSGLATE---GYRIFQSMKRHCGIEP--KLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 406 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
|+..+-..+..++.+..+... ++.+++.+.+. ..| .....-.|.-++.+.|++++|.++++.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l 100 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL 100 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444444444444444333 44555544441 111 2233333444555555555555555544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.094 Score=54.26 Aligned_cols=55 Identities=22% Similarity=0.069 Sum_probs=51.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 482 LLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 482 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
-...|...|+++.|+.+.+++....|.+..+|..|+.+|...|+|+.|+-.++-+
T Consensus 343 Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 343 QTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445778999999999999999999999999999999999999999999999887
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.98 E-value=0.23 Score=39.12 Aligned_cols=35 Identities=9% Similarity=0.202 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHhhccCCH------HHHHHHHHHhHHhhCCCCC
Q 007871 407 DDLIFLGVLIACSHSGLA------TEGYRIFQSMKRHCGIEPK 443 (586)
Q Consensus 407 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~ 443 (586)
|..+|-..+....+.|++ ++..++|++... .++|+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~ 52 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPD 52 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGG
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCcc
Confidence 455666666666666666 666677776666 45554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.96 E-value=1.3 Score=36.38 Aligned_cols=129 Identities=17% Similarity=0.089 Sum_probs=83.8
Q ss_pred HHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 007871 316 ACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC 395 (586)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 395 (586)
.....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... +..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHH
Confidence 344567777777776654 3566788888888888888888888887764 34444556667777776666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007871 396 FAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471 (586)
Q Consensus 396 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (586)
-+.....| -++....++...|+++++.+++.+.-+ .|... -.....|..+.|.++.++++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS----LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC----hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 55555544 145555566778999999888866532 22211 11223566777777777763
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=2 Score=38.48 Aligned_cols=113 Identities=9% Similarity=-0.040 Sum_probs=60.2
Q ss_pred cCCHHHHHHHHhccCCCCHh--HHHHHHHH-HHhc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhc
Q 007871 355 CGSLDEARRIFYSMTKKNVI--SYNVMIAG-LGMN--GF------GEEALKCFAQMETEGIPKD---DLIFLGVLIACSH 420 (586)
Q Consensus 355 ~g~~~~a~~~~~~~~~~~~~--~~~~l~~~-~~~~--~~------~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~ 420 (586)
.++..+..+.+....+.++. .|..++.+ +... |+ ...|...+++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 34444555555555544433 34444432 2221 22 3455666666666 5565 3456666666655
Q ss_pred -----cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 007871 421 -----SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA-GELEQALNIVESM 470 (586)
Q Consensus 421 -----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 470 (586)
-|+.++|.+.|++..+- +-.-+..++..+.+.++.. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~L-nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRY-CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHH-CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 36777777777776661 2111355555566666653 6666666666654
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=94.83 E-value=1.7 Score=37.17 Aligned_cols=151 Identities=11% Similarity=0.126 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCH
Q 007871 147 VFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDI 226 (586)
Q Consensus 147 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~ 226 (586)
..+....+..+.+.|+.+..-.+.+.+..++...-...+.++...|..+....+.+.+..++...-...+.++ ...|+.
T Consensus 33 ~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL-~~~~~~ 111 (211)
T 3ltm_A 33 YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL-GQIGDE 111 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH-HHHCCG
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHH-HHhCcH
Confidence 3333333344444443333333333333344444444444444444433333333333344444333444444 344443
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHH
Q 007871 227 SSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREML 299 (586)
Q Consensus 227 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 299 (586)
+....+.+.+..++..+....+.++.+.|..+....+...+.+++...-...+.++...+. ..+...+..+.
T Consensus 112 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 112 RAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3333333333344544444455555555543333333333334444444444444444443 33333444443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.49 Score=36.92 Aligned_cols=74 Identities=11% Similarity=0.109 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHH
Q 007871 441 EPKLEHYSCLVDLLSRAGELE---QALNIVESM-PMKP--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYV 514 (586)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 514 (586)
.|+..+--.+..++.+..+.+ +++.+++.. ...| ...+...+..++.+.|++++|.++.+.+++.+|.|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 566666666777777766543 456666655 2223 3455555666677888888888888888888887765543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.47 Score=37.39 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=27.8
Q ss_pred CCCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCC
Q 007871 370 KKNVISYNVMIAGLGMNGFG------EEALKCFAQMETEGIPKD 407 (586)
Q Consensus 370 ~~~~~~~~~l~~~~~~~~~~------~~A~~~~~~m~~~g~~p~ 407 (586)
..|..+|-..+...-+.|++ ++..++|++.... ++|+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 45777888888877777888 7778888877774 6665
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.10 E-value=0.27 Score=37.86 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
.++..+..++.+.|++++|.++.+.+++..|.|..
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 33334444444555555555555555555555443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.84 E-value=8 Score=41.07 Aligned_cols=296 Identities=11% Similarity=0.089 Sum_probs=149.5
Q ss_pred HHHHHHHHhCCChhHH-HHHHh-hCC-CCChhHHHHHHH-HHhhccCCHHHHHHHHHhCCC----CChh--HHHHHHHHH
Q 007871 182 NLVLRGFVECGEMGKA-REVFD-EMP-QKDAISWSIMID-GYRKKKGDISSARILFEHMPI----KDLI--SWNSMIDGY 251 (586)
Q Consensus 182 ~~l~~~~~~~g~~~~A-~~~~~-~~~-~~~~~~~~~ll~-~~~~~~g~~~~a~~~~~~~~~----~~~~--~~~~l~~~~ 251 (586)
..+..+++..|--.+. +.... ++. ..+..-+.+... +. ...|+.+++..+++.... .+.. .-..+.-+.
T Consensus 343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGl-Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGl 421 (963)
T 4ady_A 343 VSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGV-IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGL 421 (963)
T ss_dssp HHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHH-HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhh-hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHH
Confidence 4556777777754433 21111 111 222222222222 22 467888888888887765 2222 233344445
Q ss_pred HhcCCHHHHHHHHhhCCC-CC----------hhHHHHHHHHHHhCCC-chHHHHHHHHHHHCCCCCCHHHHH--HHHHHH
Q 007871 252 AKIGDLVAAQQLFNEMPE-RN----------VFSWSIMIDGYAQHGN-PKEALYLFREMLCQGVRPDVISVM--GAISAC 317 (586)
Q Consensus 252 ~~~g~~~~A~~~~~~~~~-~~----------~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~g~~~~~~~~~--~l~~~~ 317 (586)
...|...++..++..... ++ +..-..+.-+++..|. -+++.+.+..+.... .+...... .+...+
T Consensus 422 i~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~ 500 (963)
T 4ady_A 422 IYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCM 500 (963)
T ss_dssp HTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhh
Confidence 566665566666555432 22 1112223333333332 246666666666532 11111122 222334
Q ss_pred hccCChhHHHHHHHHHHHcCCCCchhHHHHHHH--HHHhcCCHHHHHHHHhccCC-CCHh-HHH---HHHHHHHhcCChH
Q 007871 318 AQVGALDLGKWIHVFMKRSRITMDMIVQTALID--MYMKCGSLDEARRIFYSMTK-KNVI-SYN---VMIAGLGMNGFGE 390 (586)
Q Consensus 318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~ 390 (586)
...|+.+....++..+.+.. +..+...++. ++...|+.+.+..+++.+.. .+.. -|. ++.-+|+-.|+..
T Consensus 501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH
Confidence 56677777777777766542 2233333333 33356776666666665542 3332 222 3445677788877
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH-HHHHHHHHh
Q 007871 391 EALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL-EQALNIVES 469 (586)
Q Consensus 391 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 469 (586)
...++++.+... ...+......+.-++...|+.+.+.++++.+.. ...|....-..+.-+....|.. .+++..+..
T Consensus 578 aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 578 AVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 777788888763 122222222333344445666666777766655 2345444444444444444443 577778887
Q ss_pred CCCCCCHHHHHHHHHH
Q 007871 470 MPMKPNLALWGTLLLA 485 (586)
Q Consensus 470 ~~~~p~~~~~~~l~~~ 485 (586)
+...++..+-...+.+
T Consensus 655 L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 655 LTKDPVDFVRQAAMIA 670 (963)
T ss_dssp HHTCSSHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHH
Confidence 7555666555444444
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=0.19 Score=48.02 Aligned_cols=69 Identities=13% Similarity=-0.036 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh-----CCCccCCCe
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK-----RKIKKETGR 547 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 547 (586)
...++..+...|++.++...++.+...+|-+...+..++.+|.+.|+..+|.+.|+++.+ .|+.|.+.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344566677889999999999999999999999999999999999999999998888743 488777654
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=93.25 E-value=3.3 Score=34.86 Aligned_cols=140 Identities=12% Similarity=0.134 Sum_probs=58.6
Q ss_pred chhHHHHHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCC
Q 007871 146 DVFVVNGLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGD 225 (586)
Q Consensus 146 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~ 225 (586)
|..+....+..+.+.|+.+....+.+.+..++...-...+.++...|..+..-.+.+.+..++...-...+.++ ...++
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL-~~~~~ 105 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVAL-GQIGD 105 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH-HHHCC
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHH-HHhCc
Confidence 33333333444444444333333333333444444444445555555443333333333344444444444444 44444
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCC
Q 007871 226 ISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHG 286 (586)
Q Consensus 226 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 286 (586)
.+....+.+.+..++..+....+.++.+.++.+....+...+..++...-...+.++...|
T Consensus 106 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 106 ERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3333333344444454444444555554444333333333333344433333344444333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.13 E-value=2.3 Score=32.76 Aligned_cols=140 Identities=11% Similarity=-0.006 Sum_probs=76.3
Q ss_pred HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHH
Q 007871 282 YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEA 361 (586)
Q Consensus 282 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 361 (586)
+.-.|..++..++..+.... .+..-++.++.-....-+-+...+.++.+-+. .|.. .+|++...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHH
Confidence 34466777777777776653 24445555555444444444444444443221 1211 22333333
Q ss_pred HHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCC
Q 007871 362 RRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440 (586)
Q Consensus 362 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 440 (586)
...+-.+.. +.......+..+...|+-|.-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++-++ |+
T Consensus 81 i~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~ 156 (172)
T 1wy6_A 81 VECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GE 156 (172)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence 333332221 2233444556666777777777777775432 5667777777777777777777777777776663 54
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=8.5 Score=39.05 Aligned_cols=303 Identities=11% Similarity=-0.062 Sum_probs=155.3
Q ss_pred hccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHhCCCchHHHHHHHH
Q 007871 221 KKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVF---SWSIMIDGYAQHGNPKEALYLFRE 297 (586)
Q Consensus 221 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~A~~~~~~ 297 (586)
...|+...|..+...+..........++..+..-.. +........ ++.. .+...+.-+.+ .+++.|...+..
T Consensus 165 l~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~---~~~~~~~~~-~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~ 239 (618)
T 1qsa_A 165 MKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT---VLTFARTTG-ATDFTRQMAAVAFASVAR-QDAENARLMIPS 239 (618)
T ss_dssp HHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG---HHHHHHHSC-CCHHHHHHHHHHHHHHHH-HCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHh---HHHHHhccC-CChhhHHHHHHHHHHHHh-cCHHHHHHHHHh
Confidence 345666666666666532222233334433333222 233333222 2211 12222233333 478999999988
Q ss_pred HHHCCCCCCHHHHHHH----HHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-
Q 007871 298 MLCQGVRPDVISVMGA----ISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKN- 372 (586)
Q Consensus 298 m~~~g~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~- 372 (586)
..+.+ ..+......+ .......+...++...+....... .+.....-.+....+.|+++.|...|..+....
T Consensus 240 ~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~ 316 (618)
T 1qsa_A 240 LAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAK 316 (618)
T ss_dssp HHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG
T ss_pred hhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccccc
Confidence 87543 2233332222 223334443455566665544432 333334445555567899999999999998532
Q ss_pred --HhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCC-Ch-----
Q 007871 373 --VISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEP-KL----- 444 (586)
Q Consensus 373 --~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~----- 444 (586)
.....=+..++...|+.++|..+|+.+... . +|..++.+ .+.|..-. ... ....+ ..
T Consensus 317 ~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~-------~~~-~~~~~~~~~~~~~ 381 (618)
T 1qsa_A 317 EKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYE-------LKI-DKAPQNVDSALTQ 381 (618)
T ss_dssp GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCC-------CCC-CCCCSCCCCHHHH
T ss_pred ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCC-------CCC-CCCChhHHhhhcc
Confidence 222333556777889999999999998752 2 23333321 12221100 000 00001 00
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 007871 445 EHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKA---DDCGLYVLLSNIYA 521 (586)
Q Consensus 445 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~ 521 (586)
..-..-+..+...|....|...+.......+......+.......|.++.++....+....+. .-|..|...+.-+.
T Consensus 382 ~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a 461 (618)
T 1qsa_A 382 GPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYT 461 (618)
T ss_dssp SHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHH
T ss_pred ChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHH
Confidence 011123456778899999988777663334444444555556677888887766654333220 12334555665666
Q ss_pred hcCCchHHHHHHHHHHhCCCccCCC
Q 007871 522 DAGMWEHALRIRKMMRKRKIKKETG 546 (586)
Q Consensus 522 ~~g~~~~A~~~~~~m~~~~~~~~~~ 546 (586)
+.-.++.++-.--...+.+..|...
T Consensus 462 ~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 462 SGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp TTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred HHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 6656665554433445666665543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.94 E-value=0.5 Score=38.03 Aligned_cols=30 Identities=17% Similarity=0.281 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 007871 444 LEHYSCLVDLLSRAGELEQALNIVESMPMK 473 (586)
Q Consensus 444 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 473 (586)
.+.--.+..+|.+.|++++|+.+++.++.+
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 344445667777777777777777776543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=92.92 E-value=3.7 Score=34.54 Aligned_cols=82 Identities=13% Similarity=0.081 Sum_probs=36.5
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 007871 174 EIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAK 253 (586)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 253 (586)
..++...-...+.++.+.|..+....+...+..++...-...+.++ ...++.+....+.+.+..++..+....+.++.+
T Consensus 86 ~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL-~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 86 KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFAL-GEIGDERAVEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHH-HHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3344444444444444444443333333333344444434444444 444443333333344444555555555555555
Q ss_pred cCC
Q 007871 254 IGD 256 (586)
Q Consensus 254 ~g~ 256 (586)
.|.
T Consensus 165 ~~~ 167 (201)
T 3ltj_A 165 IGG 167 (201)
T ss_dssp HCS
T ss_pred hCc
Confidence 554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.17 E-value=0.79 Score=36.92 Aligned_cols=123 Identities=11% Similarity=0.022 Sum_probs=63.5
Q ss_pred CCCCCCHHH--HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 007871 402 EGIPKDDLI--FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKL-------EHYSCLVDLLSRAGELEQALNIVESM-- 470 (586)
Q Consensus 402 ~g~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-- 470 (586)
.|+.|.... +..-+..+...|.++.|+-+.+.+..-.+..|+. .++..+++++...|++..|...|++.
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 455565543 3334556677788888887777765532233331 34556677777778887777777664
Q ss_pred --CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 471 --PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 471 --~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
+.-+ +......+. . ...... -.. .+.+..+.+.++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~~~~~~-~---~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG-N---SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC-------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCcccccc-c---cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1001 000000000 0 000000 000 1234467788999999999999999998765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.77 E-value=2.5 Score=32.99 Aligned_cols=67 Identities=7% Similarity=-0.014 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 473 KPNLALWGTLLLACRNHQ---NVTLAEVVVEGLVELKAD-DCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 473 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
.|+..+--.+.+++.++. +..+++.+++.+...+|. .....+.|+-++.+.|+|++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 355555555555555544 334556666666665553 3445555666666666666666666666553
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=91.67 E-value=5.6 Score=33.74 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=89.1
Q ss_pred hHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhH
Q 007871 164 GCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLIS 243 (586)
Q Consensus 164 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~ 243 (586)
+....+.+.+..++...-...+..+.+.|..+..-.+.+.+..+|...-...+.++ ...++.+....+.+.+..++..+
T Consensus 19 ~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL-~~~~~~~~~~~L~~~l~~~~~~v 97 (211)
T 3ltm_A 19 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADAL-GQIGDERAVEPLIKALKDEDGWV 97 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHH-HHHCCGGGHHHHHHHTTCSSHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHH-HhhCCHHHHHHHHHHHcCCCHHH
Confidence 33344444455566666666677777777755555555555566665555556666 56666555555555566667777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 007871 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGA 322 (586)
Q Consensus 244 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~ 322 (586)
....+.++.+.|+.+....+...+..++...-...+.++...|+.+ +...+..+.+ .++...-...+.++.+.+.
T Consensus 98 r~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 98 RQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 7777777777776555555555555566655555566665555533 3444444432 3455555555555555554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.21 E-value=10 Score=35.87 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=10.9
Q ss_pred HHHHhhccCCHHHHHHHHHHhHH
Q 007871 414 VLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
++..|...|++.+|.+++..+.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444444555555444444444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.83 E-value=1.7 Score=33.50 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 494 LAEVVVEGLVELKAD-DCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 494 ~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
+++.+++.+.+.+|. ....+..|+-++.+.|+|++|+++.+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444432 233444444445555555555554444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.56 E-value=10 Score=34.75 Aligned_cols=166 Identities=16% Similarity=0.082 Sum_probs=101.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHhhc
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKC----FAQMETEGIPKDDLIFLGVLIACSH 420 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~l~~~~~~ 420 (586)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|.++ ++-..+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44555667888999999888643 23445666776555443 4556667888888888888777655
Q ss_pred cCC--HHHHHHHHHHhHH---hhCC--CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 007871 421 SGL--ATEGYRIFQSMKR---HCGI--EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493 (586)
Q Consensus 421 ~g~--~~~A~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 493 (586)
... ... ..+.+++++ +.|- .-++.....++..|.+.+++.+|...|= ....+.+..+..++.-+...+.
T Consensus 107 ~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 107 FQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp SCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred CCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 432 221 223333222 1232 2367888889999999999999998884 3334444566555544333332
Q ss_pred HHHHHHHHHHhcCCCCcchHHH-HHHHHHhcCCchHHHHHHHHHHh
Q 007871 494 LAEVVVEGLVELKADDCGLYVL-LSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 494 ~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
|.....|.. .+--|.-.|+...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222222222 23347788899999988877664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.97 E-value=1.8 Score=31.31 Aligned_cols=63 Identities=19% Similarity=0.191 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
+.=+..+-++.+....+.|++......+.+|.+.+++..|.++++.++.+++.. ..+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 344566677777777899999999999999999999999999999998865444 456766654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.57 E-value=12 Score=34.03 Aligned_cols=168 Identities=13% Similarity=0.029 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHH----HHHHHHCCCCCCHHHHHHHHHHHh
Q 007871 243 SWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL----FREMLCQGVRPDVISVMGAISACA 318 (586)
Q Consensus 243 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~g~~~~~~~~~~l~~~~~ 318 (586)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++ ++-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345567778888888888876433 23445666776655554 555566788899888888888776
Q ss_pred ccCChh-HHHHHHHHH----HHcCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhc---CC
Q 007871 319 QVGALD-LGKWIHVFM----KRSRI--TMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMN---GF 388 (586)
Q Consensus 319 ~~~~~~-~a~~~~~~~----~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~---~~ 388 (586)
.-...+ .-..+.+.+ .+.|- .-++.....+...|.+.|++.+|...|-.-...+...+..++.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 543222 123333333 33332 236678888899999999999988877522222344444444333332 33
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
..++--.+ ...+--|.-.|+...|..+++...+
T Consensus 184 ~~e~dlf~---------------~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFF---------------SRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHH---------------HHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHH---------------HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 22221111 1112234456788888888887655
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.71 E-value=14 Score=33.62 Aligned_cols=169 Identities=9% Similarity=-0.002 Sum_probs=100.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHhhc
Q 007871 345 QTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALK----CFAQMETEGIPKDDLIFLGVLIACSH 420 (586)
Q Consensus 345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~l~~~~~~ 420 (586)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|.. +++-..+.+.+++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44555667778888888888643 2344566777666554 45556667888888888888777654
Q ss_pred cCCHH-HHHHHHHHhHH---hhCC--CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 007871 421 SGLAT-EGYRIFQSMKR---HCGI--EPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH---QN 491 (586)
Q Consensus 421 ~g~~~-~A~~~~~~~~~---~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---~~ 491 (586)
-...+ .=.++++.+++ +.+- .-++.....++..|.+.|++.+|...|=-. ...+...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCCCC
Confidence 22111 11233333322 1222 236788889999999999999998877632 112344554444443333 33
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
..++--++- ..+--|.-.|+...|..+++...+.
T Consensus 184 ~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 184 DSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333222211 1222466788999999998877543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.40 E-value=3.7 Score=39.09 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH----hhCCCCChHHHHH
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR----HCGIEPKLEHYSC 449 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~ 449 (586)
..++..+...|++++++..+..+... .+-+...+..++.++...|+..+|.+.|+.+.+ +.|+.|+..+-..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34556667778888888777777663 244666788888888888888888887777544 3577777765433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.24 E-value=3.6 Score=42.70 Aligned_cols=52 Identities=19% Similarity=0.147 Sum_probs=38.1
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP 471 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 471 (586)
|...|+++.|+++-++... -.|.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4567778888887777766 344566778888888888888888887777764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.37 E-value=33 Score=36.51 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=54.4
Q ss_pred HHhcCCHHHHHHHHhccCC-CCHhH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HH---HHHHHHhhccCCH
Q 007871 352 YMKCGSLDEARRIFYSMTK-KNVIS--YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDL-IF---LGVLIACSHSGLA 424 (586)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~-~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~---~~l~~~~~~~g~~ 424 (586)
+.-.|+.+....++..+.+ .+... .-.+.-++...|+.+.+..+++.+... .++. -| ..+.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCH
Confidence 3344555555555544321 12122 222223344566666666666666552 2222 12 2334456667776
Q ss_pred HHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 007871 425 TEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 425 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 470 (586)
....+++..+.. ....+......+.-++...|+.+.+..+++.+
T Consensus 577 ~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 577 SAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp HHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 666667766665 22233333333333444455555555555443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.20 E-value=4.1 Score=29.46 Aligned_cols=49 Identities=16% Similarity=0.251 Sum_probs=40.0
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 469 SMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 469 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
.+..-|++......+.+|.+.+|+..|.++++-+...-.+...+|..++
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3456699999999999999999999999999988877655566677665
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=87.11 E-value=16 Score=32.55 Aligned_cols=19 Identities=5% Similarity=-0.188 Sum_probs=7.9
Q ss_pred CCChhhHHHHHHHHHhCCC
Q 007871 175 IKDLVSWNLVLRGFVECGE 193 (586)
Q Consensus 175 ~~~~~~~~~l~~~~~~~g~ 193 (586)
.++...-...+.++...|.
T Consensus 139 d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND 157 (280)
T ss_dssp CSCHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 3444444444444444444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.83 E-value=24 Score=34.22 Aligned_cols=244 Identities=11% Similarity=0.058 Sum_probs=141.4
Q ss_pred CCCchHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHH----HHHHhc
Q 007871 285 HGNPKEALYLFREMLCQ-----GVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALI----DMYMKC 355 (586)
Q Consensus 285 ~~~~~~A~~~~~~m~~~-----g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~ 355 (586)
.|+++.|++.+-.+.+. +..........++..|...++++.....+..+.+..-.... ....++ ......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~-ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL-SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH-HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhcC
Confidence 37889999888777642 34456677888999999999999888877666544322222 122233 222222
Q ss_pred CC--HHHHHHHHhccCC---C-------CHhHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCH---HHHHHHHHHh
Q 007871 356 GS--LDEARRIFYSMTK---K-------NVISYNVMIAGLGMNGFGEEALKCFAQMET--EGIPKDD---LIFLGVLIAC 418 (586)
Q Consensus 356 g~--~~~a~~~~~~~~~---~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~g~~p~~---~~~~~l~~~~ 418 (586)
.. .+.-..+.+.+.. . .......|...|...|++.+|..++..+.. .|..+.. ..+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 2233344443331 1 112345677888899999999999998764 2322221 3566667788
Q ss_pred hccCCHHHHHHHHHHhHHh-hCCCCC----hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 007871 419 SHSGLATEGYRIFQSMKRH-CGIEPK----LEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVT 493 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~-~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 493 (586)
...+++.+|..++.++... ....++ ...+...+..+...+++.+|...|.++ ...+...++..
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~------------~~~~~~~~d~~ 255 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI------------YQTDAIKSDEA 255 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH------------HHHHHHHSCHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------------HhcccccCCHH
Confidence 8899999999988887531 112222 245666777888888888887776554 33444555555
Q ss_pred HHHHHHHHHHh---cCCCCcchHHHHHHHHHhcC--CchHHHHHHHHHHhCCC
Q 007871 494 LAEVVVEGLVE---LKADDCGLYVLLSNIYADAG--MWEHALRIRKMMRKRKI 541 (586)
Q Consensus 494 ~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~ 541 (586)
.....+..++- +.|.++.--..+...+.... ....-..+.+......+
T Consensus 256 ~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L 308 (445)
T 4b4t_P 256 KWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNEL 308 (445)
T ss_dssp HHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchH
Confidence 44444444333 34555544444544444322 12222334444445444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.26 E-value=20 Score=32.85 Aligned_cols=167 Identities=13% Similarity=0.049 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHH----HHHHHHCCCCCCHHHHHHHHHHHhc
Q 007871 244 WNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYL----FREMLCQGVRPDVISVMGAISACAQ 319 (586)
Q Consensus 244 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~g~~~~~~~~~~l~~~~~~ 319 (586)
|.++..-|.+.+++++|.+++.. -...+.+.|+...+.++ ++-..+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44566778888888888876433 23445566766554444 3555667888888888888887766
Q ss_pred cCChh-HHHHHHHHH----HHcC--CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHH
Q 007871 320 VGALD-LGKWIHVFM----KRSR--ITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEA 392 (586)
Q Consensus 320 ~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 392 (586)
...-+ .-..+.+.+ .+.| ..-++.....+...|.+.+++.+|..-|-.-.++.+..+..++.-+...+...++
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccH
Confidence 55322 112233333 3333 2346677788889999999999998887432223335554444433333322211
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHH
Q 007871 393 LKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKR 436 (586)
Q Consensus 393 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 436 (586)
-- .. ...+--|.-.++...|..+++...+
T Consensus 187 dl--------------fi-aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 PL--------------YC-ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HH--------------HH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HH--------------HH-HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11 11 1222234556788888777666554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.32 E-value=13 Score=41.17 Aligned_cols=59 Identities=14% Similarity=-0.082 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCcc----hHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKA-DDCG----LYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
|..++..+.+.+.++.+.++.+.+++..+ ++.. .|..+...+...|+|++|...+-.+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 34444445555555555555555554332 2211 34445555555555555555554443
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.56 E-value=9.5 Score=31.84 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 492 VTLAEVVVEGLVELK--ADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
...+..+|..+...+ ...+..|...+..+...|++.+|.++|+.-++.+.+|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334444444444322 3334444444444455555555555554444444433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.11 E-value=2.5 Score=37.16 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=30.9
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 454 LSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
+.+.|++++|++.+..- +..| |...-..++..+|-.|++++|..-++.+.+++|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 44556666665554432 3333 44455555555666666666666666666666553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.56 E-value=6.9 Score=30.05 Aligned_cols=62 Identities=19% Similarity=0.219 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 389 GEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 389 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
.=+..+-++.+....+.|++......+.+|.+.+|+..|.++++-++.+++.. ..+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~--~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc--hhhHHHHHH
Confidence 34556666777777899999999999999999999999999999998865443 556776665
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.15 E-value=35 Score=33.02 Aligned_cols=195 Identities=11% Similarity=-0.000 Sum_probs=117.2
Q ss_pred cCCHHHHHHHHhhCCC---------CChhHHHHHHHHHHhCCCchHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----hc
Q 007871 254 IGDLVAAQQLFNEMPE---------RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQ-GVRPDVISVMGAISAC----AQ 319 (586)
Q Consensus 254 ~g~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~~~~~~~~~l~~~~----~~ 319 (586)
.|+++.|.+.+-.+.+ ........++..|...|+++...+.+.-+.+. |..+.. ...++..+ ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 3678888877755532 23456778889999999999988877766543 433322 23344333 23
Q ss_pred cCChhHHHHHHHHHHHc------C-CCC---chhHHHHHHHHHHhcCCHHHHHHHHhccCC----C-----CHhHHHHHH
Q 007871 320 VGALDLGKWIHVFMKRS------R-ITM---DMIVQTALIDMYMKCGSLDEARRIFYSMTK----K-----NVISYNVMI 380 (586)
Q Consensus 320 ~~~~~~a~~~~~~~~~~------~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-----~~~~~~~l~ 380 (586)
....+.... ....+. | +-. .......|...|...|++.+|..++..+.. . -+..+..-+
T Consensus 107 ~~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 333332111 111111 1 111 223456788999999999999999988751 1 134566678
Q ss_pred HHHHhcCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 381 AGLGMNGFGEEALKCFAQMET----EGIPKDD--LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~----~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
+.|...+++.+|..++++... ....|+. ..+...+..+...+++.+|.+. |..+...+
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~ 248 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTD 248 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhcc
Confidence 889999999999999988642 2222222 2344555556666777666443 44455666
Q ss_pred hhcCCHHHHHHHHH
Q 007871 455 SRAGELEQALNIVE 468 (586)
Q Consensus 455 ~~~g~~~~A~~~~~ 468 (586)
...++.......+.
T Consensus 249 ~~~~d~~~~~~~L~ 262 (445)
T 4b4t_P 249 AIKSDEAKWKPVLS 262 (445)
T ss_dssp HHHSCHHHHHHHHH
T ss_pred cccCCHHHHHHHHH
Confidence 66676655544443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.04 E-value=14 Score=26.53 Aligned_cols=79 Identities=13% Similarity=0.059 Sum_probs=55.4
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 400 (586)
...++|..|-+.+...+. ...+-..-+..+.+.|++++|..+.+...-||...|-+|... +.|-.+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 345666666666666553 222222334556788999999999998888999988777543 6788888888887777
Q ss_pred HCC
Q 007871 401 TEG 403 (586)
Q Consensus 401 ~~g 403 (586)
..|
T Consensus 96 ~sg 98 (115)
T 2uwj_G 96 GSS 98 (115)
T ss_dssp TCS
T ss_pred hCC
Confidence 765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 586 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.62 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.26 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.1 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.09 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.08 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.07 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.07 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.04 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.86 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.84 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.78 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.74 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.68 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.67 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.66 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.65 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.65 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.63 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.61 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.55 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.52 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.5 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.49 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.49 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.47 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.46 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.39 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.31 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.27 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.24 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.21 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.17 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.08 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.07 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.99 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.91 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.91 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.84 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.83 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.82 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.69 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.65 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.58 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.43 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.39 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.39 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.12 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.86 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.18 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.18 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.68 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.98 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.68 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.49 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.38 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.4 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.9e-21 Score=188.70 Aligned_cols=348 Identities=11% Similarity=0.037 Sum_probs=172.9
Q ss_pred HHHHHhcCChhHHHHHhccCCC---CChhhHHHHHHHHHhCCChhHHHHHHhhCC--CCChhHHHHHHHHHhhccCCHHH
Q 007871 154 IGMYSKCGHMGCARSVFEGSEI---KDLVSWNLVLRGFVECGEMGKAREVFDEMP--QKDAISWSIMIDGYRKKKGDISS 228 (586)
Q Consensus 154 i~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~g~~~~ 228 (586)
...+.+.|++++|.+.++++.+ .++.++..+...|.+.|++++|...|++.. .|
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------------------- 64 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--------------------- 64 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------
Confidence 3445556666666666655431 244555555555666666666666555544 22
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCC
Q 007871 229 ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPE---RNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRP 305 (586)
Q Consensus 229 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~ 305 (586)
.+..++..+...|.+.|++++|...+....+ .+...+..........+....+........... ..
T Consensus 65 ----------~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 133 (388)
T d1w3ba_ 65 ----------LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PD 133 (388)
T ss_dssp ----------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TT
T ss_pred ----------CCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 2334444455555555555555555544432 122222233333333334444443333333322 22
Q ss_pred CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHH
Q 007871 306 DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAG 382 (586)
Q Consensus 306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~ 382 (586)
...............+....+...+....... +.+...+..+...+...|++++|...++... +.+...|..+...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 212 (388)
T d1w3ba_ 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhh
Confidence 22222233333344444444444444443332 2233444445555555555555555555433 1234455555555
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
+...|++++|+..+++....+ +.+...+..+...+...|++++|...++++.+ ..+.+..++..++.++...|++++
T Consensus 213 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~ 289 (388)
T d1w3ba_ 213 LKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHH
T ss_pred hhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 555555666655555555431 23334455555555555566666665555555 233344555555555555666666
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 007871 463 ALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMR 537 (586)
Q Consensus 463 A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 537 (586)
|.+.++.. ..+.+...+..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|...|++..
T Consensus 290 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 65555544 1223445555555555555666666666666655556555555556666666666666666555554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.3e-21 Score=189.85 Aligned_cols=372 Identities=10% Similarity=0.017 Sum_probs=274.1
Q ss_pred HHHHHhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhhHHHHHHHHHhCCCh
Q 007871 118 VLKACGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE---IKDLVSWNLVLRGFVECGEM 194 (586)
Q Consensus 118 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 194 (586)
+...+.+.|++++|.+.++++.+.. +-+...+..+..+|.+.|++++|...|++.. +.+..+|..+...|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence 4556778899999999999998864 3457788999999999999999999998764 34678899999999999999
Q ss_pred hHHHHHHhhCC--CCChh-HHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 007871 195 GKAREVFDEMP--QKDAI-SWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERN 271 (586)
Q Consensus 195 ~~A~~~~~~~~--~~~~~-~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 271 (586)
++|+..+.... .|... ......... ...+....+....... .......
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------------------------~~~~~~~ 134 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAAL-VAAGDMEGAVQAYVSA----------------------------LQYNPDL 134 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHSCSSHHHHHHHHH----------------------------HHHCTTC
T ss_pred cccccccccccccccccccccccccccc-cccccccccccccccc----------------------------ccccccc
Confidence 99999998876 22222 222222222 2222222222111111 0011122
Q ss_pred hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007871 272 VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDM 351 (586)
Q Consensus 272 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (586)
..............+....+...+....... +.+...+..+...+...|+.+.|...++...+.. +.+...+..+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 212 (388)
T d1w3ba_ 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNV 212 (388)
T ss_dssp THHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhh
Confidence 2333334444555556666666666555442 3344555666666667777777777777666654 2345566677777
Q ss_pred HHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHH
Q 007871 352 YMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEG 427 (586)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A 427 (586)
+...|++++|...++... ..+...+..+...+...|++++|+..|++..+. .| +..++..+..++...|++++|
T Consensus 213 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A 290 (388)
T d1w3ba_ 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHH
T ss_pred hhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777776654 345667777888888999999999999998884 44 457888899999999999999
Q ss_pred HHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 007871 428 YRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVEL 505 (586)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 505 (586)
.+.++.... ..+.+...+..++.++...|++++|++.+++. ...| +...+..+..++...|++++|+..|++++++
T Consensus 291 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 291 EDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999888 46678888999999999999999999999986 4556 5778888999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCC
Q 007871 506 KADDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 506 ~p~~~~~~~~l~~~~~~~g~ 525 (586)
+|+++.++..++.+|.+.|+
T Consensus 369 ~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 369 SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999886
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.4e-14 Score=132.50 Aligned_cols=241 Identities=14% Similarity=-0.001 Sum_probs=170.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 007871 277 IMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG 356 (586)
Q Consensus 277 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 356 (586)
.....+.+.|++++|+..|+++++.. +-+...|..+..++...|+++.|...+....+.. +.+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45667788889999999998888763 4456677778888888888888888888877764 334566666777777777
Q ss_pred CHHHHHHHHhccCC--CCHhH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHH
Q 007871 357 SLDEARRIFYSMTK--KNVIS-YNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQS 433 (586)
Q Consensus 357 ~~~~a~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 433 (586)
++++|.+.++.... |+... +....... ...+.......+..+...+.+.+|...+..
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 77777777765542 11100 00000000 000000011111223344567778888887
Q ss_pred hHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc
Q 007871 434 MKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG 511 (586)
Q Consensus 434 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 511 (586)
..+......+..++..++..+...|++++|+..+++. ...| +...|..+...+...|++++|+..++++++.+|+++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 7763333456677888889999999999999999876 2334 5778888888899999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 512 LYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 512 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
++..++.+|.+.|++++|++.|++..+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998773
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=8.1e-14 Score=130.67 Aligned_cols=267 Identities=13% Similarity=0.012 Sum_probs=198.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 007871 244 WNSMIDGYAKIGDLVAAQQLFNEMPE--R-NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQV 320 (586)
Q Consensus 244 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~ 320 (586)
.-.....+.+.|++++|...|+++.+ | +..+|..+..++...|++++|...|.+..+.. +-+...+..+..++...
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 34567778999999999999999864 3 57789999999999999999999999999864 44677888888999999
Q ss_pred CChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 007871 321 GALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQME 400 (586)
Q Consensus 321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 400 (586)
|++++|...++.+....... ............ ..+.......+..+...+.+.+|...+.+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAY-AHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccch-HHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999988764221 111000000000 0011111112223344566778888888877
Q ss_pred HCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHH
Q 007871 401 TEG-IPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLA 477 (586)
Q Consensus 401 ~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 477 (586)
... -.++...+..+...+...|++++|...++.... ..+.+...|..++.+|...|++++|.+.+++. ...| +..
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhcccccccc--cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 632 234567788888899999999999999999988 34557888999999999999999999999887 3344 678
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcch-----------HHHHHHHHHhcCCchHHH
Q 007871 478 LWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL-----------YVLLSNIYADAGMWEHAL 530 (586)
Q Consensus 478 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~ 530 (586)
.+..++.+|...|++++|+..|++++++.|.+... |..+..++...|+.+.+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 89999999999999999999999999988877653 455677777777776554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1.6e-09 Score=102.07 Aligned_cols=261 Identities=15% Similarity=-0.004 Sum_probs=169.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChhHHHHHHHHHHHcCCC-----CchhHHHHH
Q 007871 278 MIDGYAQHGNPKEALYLFREMLCQGVRPD----VISVMGAISACAQVGALDLGKWIHVFMKRSRIT-----MDMIVQTAL 348 (586)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l 348 (586)
....+...|++++|+.++++..+.....+ ...+..+..++...|++++|...++...+.... .....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34456667777777777777665421111 124445556667777777777777666543111 112344556
Q ss_pred HHHHHhcCCHHHHHHHHhccCC-------C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHH
Q 007871 349 IDMYMKCGSLDEARRIFYSMTK-------K----NVISYNVMIAGLGMNGFGEEALKCFAQMETEG----IPKDDLIFLG 413 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g----~~p~~~~~~~ 413 (586)
...+...|++..+...+..... + ....+..+...+...|+++.+...+....... .......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 6667777777777776655431 1 11345556677888888888888888776532 1222345556
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCC-----ChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-----CHHHHHHH
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEP-----KLEHYSCLVDLLSRAGELEQALNIVESMP-MKP-----NLALWGTL 482 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l 482 (586)
....+...+++..+...+........... ....+..++..+...|++++|...+++.. ..| ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 66667778888888887776655222111 12345566777888899999999888762 111 23455667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 483 LLACRNHQNVTLAEVVVEGLVEL------KADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 483 ~~~~~~~~~~~~a~~~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
..++...|++++|...++++... .|....++..++.+|.+.|++++|.+.+++..+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77788899999999999888753 355567788889999999999999999888755
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.11 E-value=4.6e-10 Score=100.74 Aligned_cols=220 Identities=11% Similarity=-0.044 Sum_probs=109.3
Q ss_pred CchHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHH
Q 007871 287 NPKEALYLFREMLCQGVRP---DVISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARR 363 (586)
Q Consensus 287 ~~~~A~~~~~~m~~~g~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 363 (586)
+.+.++..+++........ ...++..+..++.+.|++++|...|+..++.. +.++.++..+..+|...|++++|.+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 3455666666665432111 11244555566667777777777777766654 3355566666666777777777777
Q ss_pred HHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCC
Q 007871 364 IFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGI 440 (586)
Q Consensus 364 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 440 (586)
.|+++.+ .+..++..+...|...|++++|...|++..+.. +.+......+..++...+..+.+..+...... .
T Consensus 93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 168 (259)
T d1xnfa_ 93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---S 168 (259)
T ss_dssp HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---S
T ss_pred hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---c
Confidence 6666552 234556666666666677777777666666531 22333333333334444444444444433333 1
Q ss_pred CCChHHHHHHHHHHhhcCCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcch
Q 007871 441 EPKLEHYSCLVDLLSRAGEL----EQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGL 512 (586)
Q Consensus 441 ~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 512 (586)
.+....+. ++..+...... +.+...+... ...| ...++..+...+...|++++|...|+++++.+|++...
T Consensus 169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 245 (259)
T d1xnfa_ 169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 245 (259)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence 11111111 12222111111 1111111110 0112 12344445555666666666666666666666665433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=2.8e-10 Score=106.51 Aligned_cols=260 Identities=8% Similarity=-0.104 Sum_probs=184.8
Q ss_pred CCHHHHHHHHhhCCC--CC-hhHHHHHHHH----------HHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 007871 255 GDLVAAQQLFNEMPE--RN-VFSWSIMIDG----------YAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG 321 (586)
Q Consensus 255 g~~~~A~~~~~~~~~--~~-~~~~~~l~~~----------~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~ 321 (586)
+..++|+++++++.+ |+ ...|+..-.. +...|++++|+..++...+.. +-+...+.....++...+
T Consensus 43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 334677777776653 43 2334332222 233445788999999988763 445666666666665555
Q ss_pred --ChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 007871 322 --ALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCF 396 (586)
Q Consensus 322 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 396 (586)
+.+++...+..+.+...+.....+......+...+.+++|...++.+.+ .+..+|+.+...+...|++++|...+
T Consensus 122 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4788999999988875433333344556777888999999999998884 46778898999999999998887665
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 007871 397 AQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP- 474 (586)
Q Consensus 397 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 474 (586)
++... ..|+. ..+...+...+..+++...+..... ..+++...+..++..+...|+.++|...+.+. ...|
T Consensus 202 ~~~~~--~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 202 RLPEN--VLLKE---LELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp SSCHH--HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhHH--hHHHH---HHHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 54443 12221 1223334455666777888887776 44556666777888888999999999998876 4445
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
+...+..+...+...|++++|...++++++++|.+...|..|...+.-
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 456777788889999999999999999999999999999988877764
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=8.8e-09 Score=94.72 Aligned_cols=188 Identities=9% Similarity=0.009 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHHHcCCCCchhHHHHHHHH
Q 007871 273 FSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVG-ALDLGKWIHVFMKRSRITMDMIVQTALIDM 351 (586)
Q Consensus 273 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 351 (586)
.+|+.+...+.+.+.+++|+.+++++++.. |-+...|.....++...| ++++|...++.+.+.. +-+..+|..+..+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 345566666777777777777777777753 334445555555555544 3666777766666654 3345556666666
Q ss_pred HHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccC-----
Q 007871 352 YMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSG----- 422 (586)
Q Consensus 352 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g----- 422 (586)
+.+.|++++|++.++.+.+ .+...|..+...+...|++++|+..++++++. .| +...|+.+...+...+
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence 6666666666666665552 34556666666666666666666666666663 33 3345554444433322
Q ss_pred -CHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 007871 423 -LATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIV 467 (586)
Q Consensus 423 -~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 467 (586)
.+++|...+..+.+ ..|.+...|..+...+...| .+++.+.+
T Consensus 200 ~~~~~ai~~~~~al~--~~P~~~~~~~~l~~ll~~~~-~~~~~~~~ 242 (315)
T d2h6fa1 200 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRG-LSKYPNLL 242 (315)
T ss_dssp HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTC-GGGCHHHH
T ss_pred hhhHHhHHHHHHHHH--hCCCchHHHHHHHHHHHhcC-hHHHHHHH
Confidence 24566666666555 23345555555555444333 33444433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1.4e-08 Score=95.39 Aligned_cols=282 Identities=11% Similarity=-0.023 Sum_probs=168.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCC--CC------hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 007871 249 DGYAKIGDLVAAQQLFNEMPE--RN------VFSWSIMIDGYAQHGNPKEALYLFREMLCQGV-RPD----VISVMGAIS 315 (586)
Q Consensus 249 ~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~~~----~~~~~~l~~ 315 (586)
..+...|++++|.+.+++..+ |+ ..++..+..++...|++++|+..|++..+... .++ ...+..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 344555666666665554421 11 13455555666666666666666666553210 011 123344445
Q ss_pred HHhccCChhHHHHHHHHHHHc----CCCCc---hhHHHHHHHHHHhcCCHHHHHHHHhccCC--------CCHhHHHHHH
Q 007871 316 ACAQVGALDLGKWIHVFMKRS----RITMD---MIVQTALIDMYMKCGSLDEARRIFYSMTK--------KNVISYNVMI 380 (586)
Q Consensus 316 ~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~ 380 (586)
.+...|++..+...+...... +.... ...+..+...+...|+++.+...+..... .....+....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 556666666666666554321 11111 12444556667777777777777665431 1233455556
Q ss_pred HHHHhcCChHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCC---CChHHHHHHH
Q 007871 381 AGLGMNGFGEEALKCFAQMETE--GIPKDD----LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIE---PKLEHYSCLV 451 (586)
Q Consensus 381 ~~~~~~~~~~~A~~~~~~m~~~--g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~ 451 (586)
..+...++...+...+.+.... ...... ..+..+...+...|+++.|...++..... ... .....+..++
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-ccccchHHHHHHHHHH
Confidence 6677778888887777665431 111111 23555566677888999999888877652 111 1234556678
Q ss_pred HHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---------CcchHH
Q 007871 452 DLLSRAGELEQALNIVESM-------PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD---------DCGLYV 514 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---------~~~~~~ 514 (586)
.++...|++++|...+++. +..| ....+..+...+...|++++|...+++++++.+. ....+.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~ 338 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA 338 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHH
Confidence 8889999999998888765 2233 2455667777889999999999999998886432 122344
Q ss_pred HHHHHHHhcCCchHHHH
Q 007871 515 LLSNIYADAGMWEHALR 531 (586)
Q Consensus 515 ~l~~~~~~~g~~~~A~~ 531 (586)
.+...+...|+.+++..
T Consensus 339 ~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 339 QQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhcCCChHHHH
Confidence 45566777788777754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=5.3e-09 Score=96.22 Aligned_cols=223 Identities=11% Similarity=0.023 Sum_probs=172.5
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccC---CCCHhHHHHHHHHH
Q 007871 308 ISVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCG-SLDEARRIFYSMT---KKNVISYNVMIAGL 383 (586)
Q Consensus 308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~---~~~~~~~~~l~~~~ 383 (586)
..++.+...+.+.+..++|...++.+++.. +-+...|+....++...| ++++|+..++.+. ..+..+|..+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 345566667788899999999999999986 446677888888888876 5999999999876 35778999999999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC----
Q 007871 384 GMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE---- 459 (586)
Q Consensus 384 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 459 (586)
...|++++|+..++++.+. -+.+...|..+...+...|++++|.+.++.+.+ -.+.+...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~-dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQ-DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhh-hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccchh
Confidence 9999999999999999984 234568999999999999999999999999998 345577888888887776665
Q ss_pred --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhc--CCchHHHH
Q 007871 460 --LEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADD--CGLYVLLSNIYADA--GMWEHALR 531 (586)
Q Consensus 460 --~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~~A~~ 531 (586)
+++|++.+.++ ...| +...|..+...+.. ...+++...++.+.++.|.. +..+..++.+|... +..+.+..
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 57888888765 3345 67777777666544 45688899999999888764 44556677776543 44444444
Q ss_pred HHHH
Q 007871 532 IRKM 535 (586)
Q Consensus 532 ~~~~ 535 (586)
.+++
T Consensus 279 ~~~k 282 (315)
T d2h6fa1 279 ILNK 282 (315)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.07 E-value=1.3e-08 Score=93.51 Aligned_cols=185 Identities=12% Similarity=0.098 Sum_probs=106.5
Q ss_pred hhHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-C-HhHHHHHHHHHHhcCChHHHHHHHHH
Q 007871 323 LDLGKWIHVFMKRSRITMDMIVQTALIDMYMKCGSLDEARRIFYSMTK--K-N-VISYNVMIAGLGMNGFGEEALKCFAQ 398 (586)
Q Consensus 323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~ 398 (586)
.+.+..+|+..++...+.+...+...+..+.+.|+++.|..+|+.+.+ | + ...|...+....+.|+.+.|..+|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 455666666666554444555566666666666777777776666542 2 2 23566666666666677777777766
Q ss_pred HHHCCCCCCHHHHHHHHHH-hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCC
Q 007871 399 METEGIPKDDLIFLGVLIA-CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM----PMK 473 (586)
Q Consensus 399 m~~~g~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~ 473 (586)
+.+.+ +.+...|...... +...|+.+.|..+|+.+... .+.+...|..+++.+.+.|+++.|..+|++. +..
T Consensus 160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 66542 2222333322221 23346666677777766662 3445566666666666666666666666654 122
Q ss_pred C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCc
Q 007871 474 P--NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDC 510 (586)
Q Consensus 474 p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 510 (586)
| ....|...+..-..+|+.+.+..+++++.+..|...
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 2 234556656555666666666666666666555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=1.7e-09 Score=96.85 Aligned_cols=213 Identities=12% Similarity=-0.019 Sum_probs=135.3
Q ss_pred hHHHHHHHHHHHcCCCC---chhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 007871 324 DLGKWIHVFMKRSRITM---DMIVQTALIDMYMKCGSLDEARRIFYSMT---KKNVISYNVMIAGLGMNGFGEEALKCFA 397 (586)
Q Consensus 324 ~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 397 (586)
+.+...++++....... ...++..+..+|.+.|++++|...|++.. +.++.+|+.+..+|...|++++|+..|+
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 95 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 95 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhh
Confidence 44444455554432111 22356667788888888888888888766 3467788888888888888888888888
Q ss_pred HHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC
Q 007871 398 QMETEGIPKD-DLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP-MKPN 475 (586)
Q Consensus 398 ~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~ 475 (586)
+..+. .|+ ..++..+..++...|++++|...++...+. .+.+......+..++.+.+..+.+..+..... ..+.
T Consensus 96 ~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (259)
T d1xnfa_ 96 SVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 171 (259)
T ss_dssp HHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh
Confidence 88873 443 467777888888888888888888888773 34455555555555566665555444433321 1111
Q ss_pred HHHHHHHHHHHH----hcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCC
Q 007871 476 LALWGTLLLACR----NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKI 541 (586)
Q Consensus 476 ~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 541 (586)
...+. ++..+. ..+..+.+...+.......|....++..++.+|...|++++|...|++......
T Consensus 172 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 172 QWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp STHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 11111 111111 122344444444444455566677788888888888888888888888876543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.04 E-value=2.1e-08 Score=92.05 Aligned_cols=182 Identities=12% Similarity=0.046 Sum_probs=145.8
Q ss_pred CCHHHHHHHHhccC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 007871 356 GSLDEARRIFYSMT----KKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIF 431 (586)
Q Consensus 356 g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 431 (586)
+..++|..+|+... ..+...|...+..+...|+.+.|..+|+++...........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888887654 34566788888899999999999999999988432233457888899999999999999999
Q ss_pred HHhHHhhCCCCChHHHHHHHHH-HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 007871 432 QSMKRHCGIEPKLEHYSCLVDL-LSRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD 508 (586)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 508 (586)
+++.+ ..+.+...|...+.. +...|+.+.|..+|+.+ ..+.+...|...+..+...|+++.|..+|+++++..|.
T Consensus 158 ~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99988 344555666555554 34468999999999987 23346788999999999999999999999999998776
Q ss_pred Ccc----hHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 509 DCG----LYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 509 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
++. +|...+..-...|+.+.+..+++++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 553 7888888888889999999999998664
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.86 E-value=3.9e-09 Score=98.45 Aligned_cols=252 Identities=8% Similarity=-0.125 Sum_probs=172.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHCCCCCCHH-HHHH---HHHHHh-------ccCChhHHHHHHHHHHHcCCCCchhHHH
Q 007871 278 MIDGYAQHGNPKEALYLFREMLCQGVRPDVI-SVMG---AISACA-------QVGALDLGKWIHVFMKRSRITMDMIVQT 346 (586)
Q Consensus 278 l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~---l~~~~~-------~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (586)
++......+..++|+.++++.++. .|+.. .|+. ++.... ..|+++++..+++.+.+.. +.+...+.
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~ 111 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWH 111 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 333333444458999999999876 45543 3322 222222 3345677888888887765 34555666
Q ss_pred HHHHHHHhcC--CHHHHHHHHhccC---CCCHhHHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 007871 347 ALIDMYMKCG--SLDEARRIFYSMT---KKNVISYN-VMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSH 420 (586)
Q Consensus 347 ~l~~~~~~~g--~~~~a~~~~~~~~---~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 420 (586)
.+..++...+ ++++|...+..+. .++...+. .....+...+.+++|+..++++.... +-+...|..+..++..
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~ 190 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 6666666554 4888888888775 23455554 34466777889999999998888742 3355778888888888
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007871 421 SGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 421 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 498 (586)
.|++++|...+...... .|+ ...+...+...+..+++...+... ..+++...+..+...+...+++.+|...
T Consensus 191 ~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 264 (334)
T d1dcea1 191 LHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKE 264 (334)
T ss_dssp HSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHH
Confidence 88888776665554441 111 112333445566666676666554 2223444455566677788999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 499 VEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 499 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
+.+..+.+|.++.++..++.+|...|++++|.+++++..+.
T Consensus 265 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 265 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999773
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.6e-08 Score=76.19 Aligned_cols=89 Identities=18% Similarity=0.021 Sum_probs=60.9
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 007871 450 LVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWE 527 (586)
Q Consensus 450 l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 527 (586)
-+..+...|++++|+.+|++. . .+.+...|..+..++...|++++|+..++++++.+|+++..|..++.++...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 455566667777777776665 2 22356666666777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHh
Q 007871 528 HALRIRKMMRK 538 (586)
Q Consensus 528 ~A~~~~~~m~~ 538 (586)
+|...+++..+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77777777655
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=5.2e-08 Score=74.47 Aligned_cols=105 Identities=11% Similarity=-0.053 Sum_probs=90.3
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCC
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQN 491 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~ 491 (586)
-...+...|++++|+..|+++++ -.|.+...|..++.+|...|++++|+..+++. . .+.++..|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 35567888999999999999988 35667888999999999999999999999877 2 33478889999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 492 VTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+++|+..++++++.+|.++.++..+..+-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 99999999999999999999888887654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.74 E-value=3.5e-08 Score=84.18 Aligned_cols=117 Identities=8% Similarity=-0.183 Sum_probs=78.7
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 007871 406 KDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLL 483 (586)
Q Consensus 406 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 483 (586)
|+...+......+...|++++|+..|+++.. -.|.+...|..++.+|.+.|++++|+..|++. ...| +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 5666666667777777777777777777766 23556677777777777777777777777766 3445 466677777
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 007871 484 LACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAG 524 (586)
Q Consensus 484 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 524 (586)
.+|...|++++|+..|++++++.|.+...+...+..+...+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~ 120 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA 120 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 77777777777777777777776665555444444444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=1.8e-07 Score=76.08 Aligned_cols=121 Identities=9% Similarity=-0.072 Sum_probs=89.3
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACR 487 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 487 (586)
.+......|.+.|++++|...|+++.+ -.+.+...|..++.+|...|++++|...|+++ ...| +...|..++.++.
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~ 89 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 89 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 345556677888888888888888887 24557778888888888888888888888876 3334 5677888888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH--HhcCCchHHHHH
Q 007871 488 NHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY--ADAGMWEHALRI 532 (586)
Q Consensus 488 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~ 532 (586)
..|++++|+..++++.+.+|.++.++..+..+. ...+.+++|...
T Consensus 90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888888888888888888888777766553 334445555443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.8e-07 Score=75.98 Aligned_cols=105 Identities=12% Similarity=0.007 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
.+......|.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|...|+.+.+ -.+.+...|..++.+|
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~--~~p~~~~a~~~~g~~~ 88 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASN 88 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHH--HcccchHHHHHHHHHH
Confidence 34455667888889999999998888842 33456788888888888999999999988887 3455678888888888
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 007871 455 SRAGELEQALNIVESM-PMKP-NLALWGTL 482 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 482 (586)
...|++++|...+++. ...| +...+..+
T Consensus 89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l 118 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKVKPHDKDAKMKY 118 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 8999999998888877 2334 34444333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=7.5e-07 Score=74.67 Aligned_cols=141 Identities=8% Similarity=-0.068 Sum_probs=91.6
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 007871 349 IDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGY 428 (586)
Q Consensus 349 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 428 (586)
...+...|+++.|++.|..+.+++...|..+...|...|++++|+..|++.++.. +.+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 3445667788888888887777777777777778888888888888888877732 234467777777777788888887
Q ss_pred HHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 007871 429 RIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
..|++... ..+.+... .|...|. ..++ ...++..+..++...|++++|.+.++++.+..|
T Consensus 91 ~~~~kAl~--~~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALI--QLRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHH--TTTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHH--hCccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 77777765 12222100 0000000 0011 124455666678888888888888888888777
Q ss_pred CC
Q 007871 508 DD 509 (586)
Q Consensus 508 ~~ 509 (586)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 64
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=5.3e-08 Score=83.00 Aligned_cols=97 Identities=8% Similarity=-0.024 Sum_probs=73.9
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHH
Q 007871 371 KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCL 450 (586)
Q Consensus 371 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 450 (586)
|+...+......|.+.|++++|+..|++.+.. -+.+...|..+..+|.+.|++++|+..|+.+.+ -.|-+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 45556666777888888888888888887774 234556788888888888888888888888866 234467778888
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 007871 451 VDLLSRAGELEQALNIVESM 470 (586)
Q Consensus 451 ~~~~~~~g~~~~A~~~~~~~ 470 (586)
+.+|...|++++|+..|+++
T Consensus 79 g~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 88888888888888888765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.65 E-value=6.2e-08 Score=73.30 Aligned_cols=90 Identities=16% Similarity=0.086 Sum_probs=81.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 007871 448 SCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGM 525 (586)
Q Consensus 448 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 525 (586)
-.++..+.+.|++++|+..+++. ...| ++..|..+..++...|++++|+..++++++.+|.++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 35677888999999999999987 3345 688899999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHH
Q 007871 526 WEHALRIRKMMR 537 (586)
Q Consensus 526 ~~~A~~~~~~m~ 537 (586)
+++|.+.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998863
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=3.8e-07 Score=76.51 Aligned_cols=122 Identities=8% Similarity=0.007 Sum_probs=86.3
Q ss_pred HhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHH
Q 007871 417 ACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTL 494 (586)
Q Consensus 417 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~ 494 (586)
.+...|+++.|++.|..+ .+|+..++..++.+|...|++++|++.|++. ...| +...|..+..++...|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 345667777777776543 2355666777777777777777777777766 2223 56677777777777777777
Q ss_pred HHHHHHHHHhcCCCCc----------------chHHHHHHHHHhcCCchHHHHHHHHHHhCCCcc
Q 007871 495 AEVVVEGLVELKADDC----------------GLYVLLSNIYADAGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 495 a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 543 (586)
|+..|+++++..|.+. .++..++.++.+.|++++|.+.+++..+....+
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 7777777776544332 456788999999999999999999988765544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=4e-07 Score=74.70 Aligned_cols=110 Identities=12% Similarity=0.005 Sum_probs=54.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 007871 410 IFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNH 489 (586)
Q Consensus 410 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 489 (586)
.+......+.+.|++++|...|.+.+......+.... .. ...... ....+|..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~--------------~~-~~~~~~----~~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN--------------EE-AQKAQA----LRLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS--------------HH-HHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch--------------HH-Hhhhch----hHHHHHHHHHHHHHhh
Confidence 4455566778888888888888887763221111000 00 000000 0012333344445555
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 490 QNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 490 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
|++++|+..++++++++|.++.++..++.+|...|++++|...|++..+
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=4.1e-07 Score=82.33 Aligned_cols=189 Identities=10% Similarity=-0.009 Sum_probs=123.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-----CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHH
Q 007871 347 ALIDMYMKCGSLDEARRIFYSMTK-----KN----VISYNVMIAGLGMNGFGEEALKCFAQMET----EGIPK-DDLIFL 412 (586)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~ 412 (586)
....+|...|++++|.+.|.+..+ .+ ..+|..+...|.+.|++++|+..+++... .|... ...++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345567777788887777776542 11 24677788888888999999888887654 22111 124566
Q ss_pred HHHHHhh-ccCCHHHHHHHHHHhHHh---hCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhCC-C---CC----CH-HH
Q 007871 413 GVLIACS-HSGLATEGYRIFQSMKRH---CGIEP-KLEHYSCLVDLLSRAGELEQALNIVESMP-M---KP----NL-AL 478 (586)
Q Consensus 413 ~l~~~~~-~~g~~~~A~~~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~p----~~-~~ 478 (586)
.+...|. ..|++++|.+.+++...- .+.++ ...++..++..|...|++++|.+.++++. . .+ .. ..
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 6666664 469999999999887652 12222 23567888999999999999999998761 1 11 11 23
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc-----hHHHHHHHHHh--cCCchHHHHHHHH
Q 007871 479 WGTLLLACRNHQNVTLAEVVVEGLVELKADDCG-----LYVLLSNIYAD--AGMWEHALRIRKM 535 (586)
Q Consensus 479 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~ 535 (586)
+...+..+...|+++.|...++++.+.+|..+. ....++.++.. .+++++|+..|+.
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344555677889999999999999998876443 34555555554 3457788887753
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.59 E-value=6.8e-07 Score=71.79 Aligned_cols=83 Identities=10% Similarity=-0.016 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeE
Q 007871 477 ALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNI 556 (586)
Q Consensus 477 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 556 (586)
.++..+..+|.+.|++++|+..++++++.+|.+..+|..++.+|...|++++|...|++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l----------------- 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL----------------- 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence 466778888999999999999999999999999999999999999999999999999998763
Q ss_pred eEEecCCCCCCChhHHHHHHHHHHHHHhh
Q 007871 557 KEFVSGEIFDVQSEELELVIQSFVKTTIE 585 (586)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 585 (586)
+|++.++...+..+.+++++
T Consensus 131 ---------~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 131 ---------NPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp ---------STTCHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHHHHHHHHHHHHHHH
Confidence 57778888778777777654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.55 E-value=1.1e-06 Score=79.51 Aligned_cols=164 Identities=10% Similarity=-0.007 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC-----C----CHhHHHHHHHHHHh-cCChHHHHHHHHHHHH----CCCCCC-H
Q 007871 344 VQTALIDMYMKCGSLDEARRIFYSMTK-----K----NVISYNVMIAGLGM-NGFGEEALKCFAQMET----EGIPKD-D 408 (586)
Q Consensus 344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~-~~~~~~A~~~~~~m~~----~g~~p~-~ 408 (586)
+|..+..+|.+.|++++|.+.++...+ . ....+..+...|.. .|++++|++.+++..+ .+..+. .
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 455555666666666666666554431 1 12344555556644 5888888888887653 222221 2
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCC-----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC------H
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPK-----LEHYSCLVDLLSRAGELEQALNIVESM-PMKPN------L 476 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~ 476 (586)
.++..+...+...|++++|...++++.......+. ...+...+.++...|+++.|...+++. ...|. .
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 45777888889999999999999988773111111 123445566777889999999999887 22232 2
Q ss_pred HHHHHHHHHHHh--cCChHHHHHHHHHHHhcCC
Q 007871 477 ALWGTLLLACRN--HQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 477 ~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~p 507 (586)
.....++.++.. .+.+++|+..|+++.+++|
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 334555555544 3457788887776665543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=2.7e-07 Score=70.50 Aligned_cols=107 Identities=16% Similarity=0.000 Sum_probs=84.8
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCCH---HHHHHHHH
Q 007871 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGE---LEQALNIVESM-PMKPNL---ALWGTLLL 484 (586)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~ 484 (586)
..+++.+...+++++|.+.|+.... .-+.++.++..++.++.+.++ +++|+.+++++ ...|++ .++..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 3466777788899999999999888 356678888889999887554 45689999886 333433 36778888
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 485 ACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 485 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
+|...|++++|+..|+++++.+|++..+......+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~ 116 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 899999999999999999999999998777665443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.50 E-value=3.6e-07 Score=69.77 Aligned_cols=112 Identities=11% Similarity=0.047 Sum_probs=89.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCC--cchHHHHHHHH
Q 007871 448 SCLVDLLSRAGELEQALNIVESM-PM-KPNLALWGTLLLACRNHQ---NVTLAEVVVEGLVELKADD--CGLYVLLSNIY 520 (586)
Q Consensus 448 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~ 520 (586)
..++..+...+++++|.+.|++. .. +.++.++..+..++.+.+ ++++|+.+++++++.+|.+ +.++..++.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46788889999999999999987 33 447888888998887654 5567999999999988655 45899999999
Q ss_pred HhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHHHhh
Q 007871 521 ADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIE 585 (586)
Q Consensus 521 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 585 (586)
.+.|++++|++.|+++.+. +|+..+-...+..+.+.+++
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--------------------------~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--------------------------EPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh--------------------------CcCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999873 46666666666666665554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.49 E-value=2.8e-05 Score=68.80 Aligned_cols=227 Identities=10% Similarity=-0.099 Sum_probs=132.1
Q ss_pred ChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHHcCCCCchhHHH
Q 007871 271 NVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQ----VGALDLGKWIHVFMKRSRITMDMIVQT 346 (586)
Q Consensus 271 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 346 (586)
|+..+..|...+...+++++|++.|++..+.| +...+..+...+.. ..+...+...+....+.+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 34556666666777777777777777777665 33333334444432 234444444444444333
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCCHhHHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh----
Q 007871 347 ALIDMYMKCGSLDEARRIFYSMTKKNVISYNVMIAGLG----MNGFGEEALKCFAQMETEGIPKDDLIFLGVLIAC---- 418 (586)
Q Consensus 347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~---- 418 (586)
+......+...+. ...+.+.|...++.....|..+. ...+...+
T Consensus 69 -------------------------~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~ 120 (265)
T d1ouva_ 69 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGK 120 (265)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCS
T ss_pred -------------------------ccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCC
Confidence 2222222222222 13455666666666666543221 11121111
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR----AGELEQALNIVESMPMKPNLALWGTLLLACRN----HQ 490 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~ 490 (586)
........+...+..... ..+...+..|...|.. ..+...+...++......+......+...+.. ..
T Consensus 121 ~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~ 196 (265)
T d1ouva_ 121 VVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 196 (265)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred cccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCccccc
Confidence 224455666666665544 2445556666666654 34566666666665434466666666655554 56
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHhCCCcc
Q 007871 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYAD----AGMWEHALRIRKMMRKRKIKK 543 (586)
Q Consensus 491 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~~ 543 (586)
++++|+.+|+++.+.+ ++..+..|+.+|.+ ..++++|.++|++..+.|-.+
T Consensus 197 d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 197 NFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred chhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 8999999999988875 56788888888876 347889999999988877543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=7.5e-07 Score=69.02 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=88.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcc-------hHHHHH
Q 007871 447 YSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCG-------LYVLLS 517 (586)
Q Consensus 447 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 517 (586)
+..++..+.+.|++++|+..|++. ...| +...+..+..+|...|++++|+..++++++++|.++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 456788888999999999998877 3334 6888888999999999999999999999999888765 455566
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECCeEeEEecCCCCCCChhHHHHHHHHHHHHHhhC
Q 007871 518 NIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDGNIKEFVSGEIFDVQSEELELVIQSFVKTTIER 586 (586)
Q Consensus 518 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 586 (586)
.++...+++++|++.+++.... +| ..++...|+++.+.++++
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~~--------------------------~~-~~~~~~~l~~~~k~lkeq 128 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLAE--------------------------HR-TPDVLKKCQQAEKILKEQ 128 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--------------------------CC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHHHHHhc--------------------------CC-CHHHHHHHHHHHHHHhCC
Confidence 7778888999999999887541 23 346677788877777653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.9e-06 Score=70.56 Aligned_cols=134 Identities=11% Similarity=-0.025 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+......+.+.|++++|+..|++.+.. -|.. .+..+.-......+. ..+|..++.+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~------------~~~~~~~~~~~~~~~--------~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYE------------SSFSNEEAQKAQALR--------LASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTC------------CCCCSHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhc------------cccchHHHhhhchhH--------HHHHHHHHHH
Confidence 34555677899999999999999998763 1110 000001111111111 2367778999
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 007871 454 LSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHA 529 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 529 (586)
|.+.|++++|+..+++. ...| ++..+..+..++...|++++|+..|+++++++|+++.+...+..+..+.+...+.
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877 3345 7889999999999999999999999999999999999999998887776665544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.46 E-value=8.1e-07 Score=72.87 Aligned_cols=84 Identities=7% Similarity=-0.048 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCccCCCeeEEEECC
Q 007871 475 NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIKKETGRSVIEIDG 554 (586)
Q Consensus 475 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~ 554 (586)
....+..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|++.|++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--------------- 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--------------- 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 34566777788888999999999999999999999999999999999999999999999988772
Q ss_pred eEeEEecCCCCCCChhHHHHHHHHHHHHHh
Q 007871 555 NIKEFVSGEIFDVQSEELELVIQSFVKTTI 584 (586)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 584 (586)
+|+..++...|..+..+++
T Consensus 141 -----------~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 141 -----------APEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp -----------CTTCHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHHH
Confidence 4566677777766665543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.39 E-value=5.5e-06 Score=67.56 Aligned_cols=111 Identities=13% Similarity=-0.016 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 007871 409 LIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRN 488 (586)
Q Consensus 409 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 488 (586)
..+......+.+.|++.+|...|.....-....+.... +.. ...+. -...++..+..+|..
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~--------------~~~-~~~~~----~~~~~~~Nla~~~~~ 76 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE--------------KES-KASES----FLLAAFLNLAMCYLK 76 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH--------------HHH-HHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch--------------hhh-hhcch----hHHHHHHhHHHHHHH
Confidence 34555666677777777777777766552221111000 000 00000 001233444555566
Q ss_pred cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 489 HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 489 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.|++++|+..++++++++|.++.++..++.+|...|++++|...|+++.+
T Consensus 77 l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 77 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.31 E-value=6.9e-06 Score=66.94 Aligned_cols=142 Identities=11% Similarity=-0.087 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHH
Q 007871 374 ISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDL 453 (586)
Q Consensus 374 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 453 (586)
..+.-....+.+.|++++|+..|++.+.. .|. ......+. ......+ ...+|..+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~-----------~~~~~~~~-~~~~~~~--------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEM-----------EYGLSEKE-SKASESF--------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT-----------CCSCCHHH-HHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH-----------hhccchhh-hhhcchh--------HHHHHHhHHHH
Confidence 45666778899999999999999887651 110 00001111 1111111 13367778899
Q ss_pred HhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH-HH
Q 007871 454 LSRAGELEQALNIVESM-P-MKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH-AL 530 (586)
Q Consensus 454 ~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~ 530 (586)
|.+.|++++|+..+++. . .+.+...|..+..++...|++++|+..|+++++++|+++.+...+..+....+...+ ..
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999887 3 344788999999999999999999999999999999999999999888777765553 44
Q ss_pred HHHHHHH
Q 007871 531 RIRKMMR 537 (586)
Q Consensus 531 ~~~~~m~ 537 (586)
..+..|-
T Consensus 154 k~~~~~f 160 (168)
T d1kt1a1 154 RTYANMF 160 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.27 E-value=0.00063 Score=59.65 Aligned_cols=227 Identities=10% Similarity=-0.085 Sum_probs=127.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----CCCchHHHHHHHHHHHCCCCCCHHHHHHHH
Q 007871 240 DLISWNSMIDGYAKIGDLVAAQQLFNEMPE-RNVFSWSIMIDGYAQ----HGNPKEALYLFREMLCQGVRPDVISVMGAI 314 (586)
Q Consensus 240 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~ 314 (586)
|+..+..|...+.+.+++++|++.|++..+ .+..++..|...|.. ..++..|...+......+. ......+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhccc
Confidence 567788888899999999999999999864 567777778877776 5688899999999888763 22233333
Q ss_pred HHHh----ccCChhHHHHHHHHHHHcCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccC-CCCHhHHHHHHHHHHh
Q 007871 315 SACA----QVGALDLGKWIHVFMKRSRITMDMIVQTALIDMYMK----CGSLDEARRIFYSMT-KKNVISYNVMIAGLGM 385 (586)
Q Consensus 315 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~ 385 (586)
..+. ...+.+.|...++...+.|.. .....+...+.. ......+...+.... ..+...+..+...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 3322 345667777777777766532 112222222221 222333333333222 1233333333333322
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh----cCCHH
Q 007871 386 NGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR----AGELE 461 (586)
Q Consensus 386 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 461 (586)
.. ....+...+..+++...+ ..+......+...|.. ..+++
T Consensus 155 ~~-------------------------------~~~~~~~~~~~~~~~a~~----~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 155 GR-------------------------------GTPKDLKKALASYDKACD----LKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp TS-------------------------------SSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred CC-------------------------------Ccccccccchhhhhcccc----ccccccccchhhhcccCcccccchh
Confidence 00 012344445555554444 1234444445444443 44666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC
Q 007871 462 QALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 462 ~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 507 (586)
+|+..|.+....-++..+..|...|.. ..+.++|..+|+++.+.+.
T Consensus 200 ~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 200 EALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 677776665333345555555555543 3367778888887776653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.24 E-value=4.3e-06 Score=68.34 Aligned_cols=86 Identities=9% Similarity=0.017 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIY 520 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 520 (586)
....+..++.+|.+.|++++|+..++++ ...| ++..|..+..++...|++++|+..|+++++++|+++.+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888899999999999999999887 4445 7889999999999999999999999999999999999999888777
Q ss_pred HhcCCchH
Q 007871 521 ADAGMWEH 528 (586)
Q Consensus 521 ~~~g~~~~ 528 (586)
.+.....+
T Consensus 156 ~~l~~~~~ 163 (169)
T d1ihga1 156 QKIKAQKD 163 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.21 E-value=1.4e-05 Score=63.86 Aligned_cols=127 Identities=7% Similarity=-0.097 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHH
Q 007871 375 SYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLL 454 (586)
Q Consensus 375 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 454 (586)
.+......+.+.|++.+|+..|.+.+.. .|.. ............. .....+|..++.+|
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~-----------~~~~~~~~~~~~~--------~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDF--FIHT-----------EEWDDQILLDKKK--------NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTC-----------TTCCCHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccch-----------hhhhhHHHHHhhh--------hHHHHHHhhHHHHH
Confidence 3445556677778888888877777652 1110 0000000000000 01234678899999
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 455 SRAGELEQALNIVESM-PMKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 455 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
.+.|++++|++.++++ ...| +...|..++.++...|++++|+..|+++++++|.|+.+...+..+..+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999887 3344 789999999999999999999999999999999999998887765543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=3.5e-07 Score=89.60 Aligned_cols=96 Identities=11% Similarity=-0.102 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 007871 443 KLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD 522 (586)
Q Consensus 443 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 522 (586)
+...+..++..+.+.|+.++|...+..........++..++..+...|++++|+..|+++.+++|+++..|+.|+.++..
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp ------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34445555555555566555555443321000123344455555566666666666666666666666666666666666
Q ss_pred cCCchHHHHHHHHHHh
Q 007871 523 AGMWEHALRIRKMMRK 538 (586)
Q Consensus 523 ~g~~~~A~~~~~~m~~ 538 (586)
.|++.+|...|.+...
T Consensus 199 ~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 199 KGDHLTTIFYYCRSIA 214 (497)
T ss_dssp TTCHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHh
Confidence 6666666666655544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=0.0018 Score=58.13 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=57.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh
Q 007871 377 NVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR 456 (586)
Q Consensus 377 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 456 (586)
.-++..|.+.|++++|..++-. ..++......++..+.+.++.+...++....... .| ...+.++.....
T Consensus 178 ~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~---~p--~~i~~lL~~v~~ 247 (336)
T d1b89a_ 178 AELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KP--LLLNDLLMVLSP 247 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH---CG--GGHHHHHHHHGG
T ss_pred HHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc---CH--HHHHHHHHHhcc
Confidence 3344555566666666554322 2222222333444455555655555555544441 12 233445555555
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 007871 457 AGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEH 528 (586)
Q Consensus 457 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 528 (586)
.-+..+.++.+++ .++......+++...+. ++..+...+..+|...++++.
T Consensus 248 ~~d~~r~V~~~~k-------------------~~~l~li~p~Le~v~~~--n~~~vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 248 RLDHTRAVNYFSK-------------------VKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQA 298 (336)
T ss_dssp GCCHHHHHHHHHH-------------------TTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHHh-------------------cCCcHHHHHHHHHHHHc--ChHHHHHHHHHHHhCcchhHH
Confidence 5555555554443 33333444444443332 233456666666666666543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.08 E-value=9.9e-06 Score=66.40 Aligned_cols=122 Identities=13% Similarity=-0.003 Sum_probs=84.5
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 007871 412 LGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGEL-EQALNIVESMPMKPNLALWGTLLLACRNHQ 490 (586)
Q Consensus 412 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~ 490 (586)
..........|++++|.+.|.....- . +.... ..+ ..+.+ .....-++. .....+..+...+...|
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l--~-rG~~l-----~~~-~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALRE--W-RGPVL-----DDL-RDFQFVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--C-CSSTT-----GGG-TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--C-ccccc-----ccC-cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 33445667788888888888888762 1 11100 000 00110 000011111 12346677888899999
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHh-----CCCccCCC
Q 007871 491 NVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRK-----RKIKKETG 546 (586)
Q Consensus 491 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 546 (586)
++++|+..++++++.+|.+...|..++.+|.+.|++++|++.|+++.+ .|+.|.+.
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 999999999999999999999999999999999999999999999843 57776543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.07 E-value=1.5e-05 Score=59.73 Aligned_cols=87 Identities=7% Similarity=-0.077 Sum_probs=51.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhc
Q 007871 379 MIAGLGMNGFGEEALKCFAQMETEGIPK-DDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRA 457 (586)
Q Consensus 379 l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 457 (586)
+...+.+.|++++|+..|++.+.. .| +...|..+..++.+.|++++|+..++++.+ -.|.+...+..++.+|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccc--cccccccchHHHHHHHHHC
Confidence 344455566666666666666552 33 345566666666666666666666666655 2344555666666666666
Q ss_pred CCHHHHHHHHHh
Q 007871 458 GELEQALNIVES 469 (586)
Q Consensus 458 g~~~~A~~~~~~ 469 (586)
|++++|.+.+++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666666554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.99 E-value=7.8e-06 Score=64.55 Aligned_cols=128 Identities=14% Similarity=0.014 Sum_probs=73.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc----------CCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHS----------GLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
|-+.+.+++|...|+...+. -+.+...+..+..+|... +.+++|+..|+++.+ --|.+..+|..++.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~-~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKS-NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhh-CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHHH
Confidence 34445566666666666663 122334555555555432 233455555555554 22334455555555
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 007871 453 LLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRI 532 (586)
Q Consensus 453 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 532 (586)
+|...|++. ++... ..+.+++|.+.|+++++++|++...+..|... ..|.++
T Consensus 84 ~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~ 135 (145)
T d1zu2a1 84 AYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQL 135 (145)
T ss_dssp HHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHH
T ss_pred HHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHH
Confidence 554443210 11111 11246889999999999999999888777755 466777
Q ss_pred HHHHHhCCC
Q 007871 533 RKMMRKRKI 541 (586)
Q Consensus 533 ~~~m~~~~~ 541 (586)
+.+..+.|+
T Consensus 136 ~~e~~k~~~ 144 (145)
T d1zu2a1 136 HAEAYKQGL 144 (145)
T ss_dssp HHHHHHSSS
T ss_pred HHHHHHHhc
Confidence 777777664
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=5.9e-05 Score=57.90 Aligned_cols=92 Identities=4% Similarity=-0.054 Sum_probs=48.1
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHH
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMP----MKPN-----LALWGTLLL 484 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l~~ 484 (586)
+...+...|++++|+..|.+.++ -.+.+...+..++.+|.+.|++++|++.++++- ..+. ..++..+..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554 123344555555555555555555555554430 0011 124445555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCC
Q 007871 485 ACRNHQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 485 ~~~~~~~~~~a~~~~~~~~~~~p 507 (586)
.+...+++++|+..|++.+...|
T Consensus 88 ~~~~~~~~~~A~~~~~kal~~~~ 110 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLAEHR 110 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCC
Confidence 56666777777777777666554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.91 E-value=0.004 Score=55.72 Aligned_cols=279 Identities=13% Similarity=0.068 Sum_probs=143.7
Q ss_pred CChhhHhHHHHHhccCCCCChHHHHHHHhccCCCCcchHHHHHHHHhcCCCchhHHHHHHHhHhCCCCCCcccHHHHHHH
Q 007871 42 TEPFTLSQLLMSLTSPNTLNMDQAERLFNQIYQPNTYMHNTMIRGYTQSSNPQKALSFYVNMKRKGLLVDNYTYPFVLKA 121 (586)
Q Consensus 42 ~~~~~~~~ll~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 121 (586)
|+..-...+.. .|.+. |.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+...
T Consensus 12 ~n~~d~~~i~~-~c~~~-~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~ 78 (336)
T d1b89a_ 12 PNNAHIQQVGD-RCYDE-KMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFA 78 (336)
T ss_dssp C------------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHH
T ss_pred CCcCCHHHHHH-HHHHC-CCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHH
Confidence 44444445555 66677 888888888875543 7778888888888888888776441 45577777777
Q ss_pred HhccCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChhHHHHHhccCC---CCChhhHHHHHHHHHhCCChhHHH
Q 007871 122 CGVLMGLVEGTEIHGEVVKMGFLCDVFVVNGLIGMYSKCGHMGCARSVFEGSE---IKDLVSWNLVLRGFVECGEMGKAR 198 (586)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 198 (586)
|........+ .+...+...++.....++..|...|.+++...+++... ..+...++.++..|++.+ .++..
T Consensus 79 l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~ 152 (336)
T d1b89a_ 79 CVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMR 152 (336)
T ss_dssp HHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHH
Confidence 7665544332 22233344455566778888888888888888887543 346667788888887764 34444
Q ss_pred HHHhhCCCCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHH
Q 007871 199 EVFDEMPQKDAISWSIMIDGYRKKKGDISSARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIM 278 (586)
Q Consensus 199 ~~~~~~~~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 278 (586)
+.+.... +......++..| .+.+-+ ..++..|.+.|+++.|..+.-.-.. +..-....
T Consensus 153 e~l~~~s--~~y~~~k~~~~c-~~~~l~------------------~elv~Ly~~~~~~~~A~~~~i~~~~-~~~~~~~f 210 (336)
T d1b89a_ 153 EHLELFW--SRVNIPKVLRAA-EQAHLW------------------AELVFLYDKYEEYDNAIITMMNHPT-DAWKEGQF 210 (336)
T ss_dssp HHHHHHS--TTSCHHHHHHHH-HTTTCH------------------HHHHHHHHHTTCHHHHHHHHHHSTT-TTCCHHHH
T ss_pred HHHHhcc--ccCCHHHHHHHH-HHcCCh------------------HHHHHHHHhcCCHHHHHHHHHHcch-hhhhHHHH
Confidence 4443321 122222333444 333333 3444555555666655544333211 11112223
Q ss_pred HHHHHhCCCchHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHhccCChhHHHHHHHHHHHcCCCCchhHHHH
Q 007871 279 IDGYAQHGNPKEALYLFREMLCQGVRPDVI-----------SVMGAISACAQVGALDLGKWIHVFMKRSRITMDMIVQTA 347 (586)
Q Consensus 279 ~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 347 (586)
+..+.+.++++...+++....+. .|+.. ....++..+.+.+++.....+++...+.+ +..+.++
T Consensus 211 ~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~a 285 (336)
T d1b89a_ 211 KDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNES 285 (336)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHH
T ss_pred HHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHH
Confidence 34444444444444444433332 12110 01223344445555555555565554443 3356666
Q ss_pred HHHHHHhcCCHHHHHHHHh
Q 007871 348 LIDMYMKCGSLDEARRIFY 366 (586)
Q Consensus 348 l~~~~~~~g~~~~a~~~~~ 366 (586)
+...|...++++.-.+..+
T Consensus 286 l~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 286 LNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhCcchhHHHHHHHH
Confidence 7777776666555444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.84 E-value=4.7e-05 Score=60.89 Aligned_cols=88 Identities=13% Similarity=-0.055 Sum_probs=61.4
Q ss_pred HHHhhcCCHHHHHHHHHhC----CCCC----------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---------
Q 007871 452 DLLSRAGELEQALNIVESM----PMKP----------NLALWGTLLLACRNHQNVTLAEVVVEGLVELKAD--------- 508 (586)
Q Consensus 452 ~~~~~~g~~~~A~~~~~~~----~~~p----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--------- 508 (586)
..+...|++++|++.|++. +..| ...+|+.+..+|...|++++|...+++++++.|.
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3444556666666655544 1111 1356777778888888888888888888775332
Q ss_pred --CcchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 509 --DCGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 509 --~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
...+++.++.+|...|++++|.+.|++..+.
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1235788999999999999999999998753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=6.5e-05 Score=53.97 Aligned_cols=64 Identities=14% Similarity=0.018 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCCchHHHHHHHHHHhC
Q 007871 476 LALWGTLLLACRNHQNVTLAEVVVEGLVELKADD-------CGLYVLLSNIYADAGMWEHALRIRKMMRKR 539 (586)
Q Consensus 476 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 539 (586)
...+..+...+.+.|+++.|+.+|++++++.|.+ +.++..++.+|.+.|++++|+..++++.+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 3344567778899999999999999999875543 457889999999999999999999999773
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=5e-05 Score=54.59 Aligned_cols=74 Identities=12% Similarity=0.036 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----C----CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHH
Q 007871 446 HYSCLVDLLSRAGELEQALNIVESM----P----MKP-NLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLL 516 (586)
Q Consensus 446 ~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 516 (586)
.+-.++..+.+.|++++|+..|++. + ..+ ...++..+..++.+.|++++|+..++++++++|+++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3445677777777777777777655 1 112 256788899999999999999999999999999999998887
Q ss_pred HHH
Q 007871 517 SNI 519 (586)
Q Consensus 517 ~~~ 519 (586)
...
T Consensus 87 ~~~ 89 (95)
T d1tjca_ 87 KYF 89 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=9.3e-06 Score=79.22 Aligned_cols=219 Identities=8% Similarity=-0.077 Sum_probs=98.1
Q ss_pred HHHHHHhhCCC--CC-hhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHH
Q 007871 259 AAQQLFNEMPE--RN-VFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKR 335 (586)
Q Consensus 259 ~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 335 (586)
+|.+.|++..+ |+ ..++..+..++...|++++| |++++.. .|+...-......+. ...+..+...++...+
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~k 77 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW-NHAFKNQITTLQGQAK 77 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH-HHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH-HHHHHHHHHHHHHhcc
Confidence 45555555542 32 34455555666666666655 5555543 222111000000000 1113344555555544
Q ss_pred cCCCCchhHHHHHH--HHHHhcCCHHHHHHHHhccCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 007871 336 SRITMDMIVQTALI--DMYMKCGSLDEARRIFYSMTK---KNVISYNVMIAGLGMNGFGEEALKCFAQMETEGIPKDDLI 410 (586)
Q Consensus 336 ~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 410 (586)
....++..-..... ..+...+.++.+...+..... ++...+..+...+.+.|+.++|...+++.... .| ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~ 154 (497)
T d1ya0a1 78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHC 154 (497)
T ss_dssp CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HHH
T ss_pred cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHH
Confidence 43333322221111 122234455666665554432 34445666666677777777777666655431 11 245
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 007871 411 FLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM--PMKPNLALWGTLLLACRN 488 (586)
Q Consensus 411 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 488 (586)
+..+...+...|++++|...|++..+ -.|.+...|+.|+..|...|+..+|...|.+. ...|-+..+..|...+.+
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 66666777777777777777777776 34445677777777777777777777777665 234566666666655543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.65 E-value=5.7e-05 Score=66.00 Aligned_cols=130 Identities=13% Similarity=-0.032 Sum_probs=85.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
..+.|++++|+..+++.++. -+-+...+..+...++..|++++|...++...+. .+.+...+..+...+...+..++
T Consensus 6 aL~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHH
Confidence 45678888888888888884 2345578888888888888888888888888772 33345556556666555555544
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 463 ALNIVESM--PMKPN-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 463 A~~~~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
+..-.... ...|+ ...+......+...|+.++|...++++.+..|..+..++.
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~ 138 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAND 138 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETT
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccccc
Confidence 43322221 11232 2233333445777888888888888888888887766543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.58 E-value=3.3e-05 Score=60.79 Aligned_cols=96 Identities=8% Similarity=0.010 Sum_probs=67.2
Q ss_pred hccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 007871 419 SHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVV 498 (586)
Q Consensus 419 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 498 (586)
.+.+.+++|...|+...+ ..|.+...+..++.+|...+++..+.+ ..+.+++|+..
T Consensus 8 ~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~~ 63 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAITK 63 (145)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHHH
Confidence 344556666666666666 234455666666666555444433322 23456789999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCC-----------chHHHHHHHHHHh
Q 007871 499 VEGLVELKADDCGLYVLLSNIYADAGM-----------WEHALRIRKMMRK 538 (586)
Q Consensus 499 ~~~~~~~~p~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~ 538 (586)
|+++++++|+++.+|..++.+|...|+ +++|.+.|++..+
T Consensus 64 ~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 64 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 999999999999999999999988764 5778888888766
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.43 E-value=0.00073 Score=53.60 Aligned_cols=92 Identities=13% Similarity=0.046 Sum_probs=56.7
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCC----------hHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC----
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPK----------LEHYSCLVDLLSRAGELEQALNIVESM--------PMKPN---- 475 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~---- 475 (586)
+...|++++|++.|++...-..-.|+ ...|+.++.+|...|++++|.+.+++. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 34445555555555555442111111 245666777777777777777666554 11222
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC
Q 007871 476 -LALWGTLLLACRNHQNVTLAEVVVEGLVELKADD 509 (586)
Q Consensus 476 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 509 (586)
...+..+..+|...|++++|+..|++++++.|..
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 2245667788999999999999999999875443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.39 E-value=7.9e-05 Score=65.06 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=87.3
Q ss_pred hhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChHHH
Q 007871 418 CSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVESM-PMKPN-LALWGTLLLACRNHQNVTLA 495 (586)
Q Consensus 418 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a 495 (586)
..+.|++++|+..+++..+ ..|.+...+..++..|+..|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4567999999999999999 56778999999999999999999999999987 34554 44454454444443333333
Q ss_pred HHHHHHHHhc-CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCC
Q 007871 496 EVVVEGLVEL-KADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRK 540 (586)
Q Consensus 496 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 540 (586)
.......... .|++...+...+..+...|++++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 2222221112 24444555666788999999999999999987754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=0.0011 Score=53.82 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=21.4
Q ss_pred HHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 007871 414 VLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQALNIVE 468 (586)
Q Consensus 414 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 468 (586)
+..++...|++++|...++.+.. -.+.+...|..++.+|.+.|+.++|++.|+
T Consensus 73 la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~ 125 (179)
T d2ff4a2 73 KAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYR 125 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 33333444444444444444433 122333444444444444444444444433
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.11 Score=48.66 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=29.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCC
Q 007871 247 MIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQG 302 (586)
Q Consensus 247 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 302 (586)
.+..+.+.++++.....+.... .+...-.....+....|+.+.|...+..+-..|
T Consensus 78 ~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 3445556666666555443221 233333445556666666666666666555443
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.86 E-value=0.042 Score=39.59 Aligned_cols=141 Identities=9% Similarity=0.032 Sum_probs=102.5
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHHH
Q 007871 383 LGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELEQ 462 (586)
Q Consensus 383 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 462 (586)
+...|..++..+++.+... ..+..-|++++--....-+-+-..++++.+-+-+.+. .++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred HHHhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence 4567888888888888776 3355567777766666666666667776665522222 3444444
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHhCCCc
Q 007871 463 ALNIVESMPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMMRKRKIK 542 (586)
Q Consensus 463 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 542 (586)
....+-.+. .+...++..+..+..+|.-+.-..+++.+.+.+..+|.+...++.+|.+.|...++-+++.+.-+.|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 444444442 345566777788889999999999999988888889999999999999999999999999999999875
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.015 Score=42.56 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHhcCCCCc-chHHHHHHHHHhcCCchHHHHHHHHHHh
Q 007871 492 VTLAEVVVEGLVELKADDC-GLYVLLSNIYADAGMWEHALRIRKMMRK 538 (586)
Q Consensus 492 ~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 538 (586)
.++++.+++.+.+.+|.+. ..++.|+-+|.+.|++++|..+++++.+
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3444555555544444332 3444445555555555555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.18 E-value=0.036 Score=41.83 Aligned_cols=82 Identities=9% Similarity=-0.088 Sum_probs=47.2
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHH
Q 007871 459 ELEQALNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVELKADDCGLYVLLSNIYAD----AGMWEHAL 530 (586)
Q Consensus 459 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 530 (586)
+.++|++.+++....-++.....+...|.. ..|.++|..+|+++.+.+ ++.....|+.+|.. ..+.++|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHH
Confidence 444455544444222233333333333332 346777777777776653 45566677777765 35677888
Q ss_pred HHHHHHHhCCCc
Q 007871 531 RIRKMMRKRKIK 542 (586)
Q Consensus 531 ~~~~~m~~~~~~ 542 (586)
.+|++..+.|..
T Consensus 116 ~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 116 KTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHTTCH
T ss_pred HHHHHHHHCCCH
Confidence 888887776653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.68 E-value=0.1 Score=39.14 Aligned_cols=111 Identities=10% Similarity=-0.075 Sum_probs=75.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhh----cCCHHHH
Q 007871 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSR----AGELEQA 463 (586)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 463 (586)
++++|+++|++..+.|... ....| +.....+.++|.+++++..+. | ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~~---a~~~l--~~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMF---GCLSL--VSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTT---HHHHH--HTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCChh---hhhhh--ccccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 6678888888887776322 22222 234456788888888888772 3 44555666666654 4578899
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCC
Q 007871 464 LNIVESMPMKPNLALWGTLLLACRN----HQNVTLAEVVVEGLVELKA 507 (586)
Q Consensus 464 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 507 (586)
.++|++....-++.....|...|.. ..|..+|..+|+++.+.+.
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999887444456666666666654 4688999999999888663
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.98 E-value=0.13 Score=37.50 Aligned_cols=74 Identities=12% Similarity=0.105 Sum_probs=54.1
Q ss_pred CChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHH
Q 007871 442 PKLEHYSCLVDLLSRAG---ELEQALNIVESM-PMKP-N-LALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVL 515 (586)
Q Consensus 442 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 515 (586)
++..+--.++.++.+.. +.++++.+++++ ...| + ...+..+..+|.+.|++++|..+++++++.+|.+..+...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 45556556666666554 456777777776 2233 3 3677778888999999999999999999999999876544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.68 E-value=0.59 Score=33.56 Aligned_cols=138 Identities=12% Similarity=0.014 Sum_probs=76.5
Q ss_pred HhCCChhHHHHHHhhCC-CCChhHHHHHHHHHhhccCCHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 007871 189 VECGEMGKAREVFDEMP-QKDAISWSIMIDGYRKKKGDISSARILFEHMPIK-DLISWNSMIDGYAKIGDLVAAQQLFNE 266 (586)
Q Consensus 189 ~~~g~~~~A~~~~~~~~-~~~~~~~~~ll~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 266 (586)
.-.|..++..+++.+.. ..+..-||.++--. ...-+-+...+.++.+-+- |. ..++++......+-.
T Consensus 13 ildG~ve~Gveii~k~~~ss~~~E~NW~ICNi-idt~dC~~v~~~Ld~IG~~FDl----------s~C~Nlk~vv~C~~~ 81 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNL-LESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECGVI 81 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHH-HHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHHHH
T ss_pred HHhhhHHhHHHHHHHHcccCCccccceeeeec-ccccchHHHHHHHHHHhhhcCc----------hhhhcHHHHHHHHHH
Confidence 44566666666665555 33444455544444 3333333333333322210 11 122333333333322
Q ss_pred CCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHHcCCC
Q 007871 267 MPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVISVMGAISACAQVGALDLGKWIHVFMKRSRIT 339 (586)
Q Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 339 (586)
+.. +....+..++...++|+-+.-.++++++.+.+ .|++.....+..+|-+.|+..++..++.++-+.|++
T Consensus 82 ~n~-~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 82 NNT-LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp TTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hcc-hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 222 22344556677778888888888888877654 677777778888888888888888888888777753
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.49 E-value=2.8 Score=38.54 Aligned_cols=349 Identities=12% Similarity=0.023 Sum_probs=180.9
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCChhhHHHHHHHHHhCCChhHHHHHHhhCC---CCChhHHHHHHHHHhhccCCHHH
Q 007871 152 GLIGMYSKCGHMGCARSVFEGSEIKDLVSWNLVLRGFVECGEMGKAREVFDEMP---QKDAISWSIMIDGYRKKKGDISS 228 (586)
Q Consensus 152 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~g~~~~ 228 (586)
..+..+.+.+++......+...+ .+...-.....+....|+.++|...+..+= ......+..++..+ ...|
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~-~~~~---- 150 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVW-RASG---- 150 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHH-HHTT----
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHH-HhcC----
Confidence 33455566667766665554322 244444455666667777777666554332 11222223333322 2211
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCchHHHHHHHHHHHCCCCCCHH
Q 007871 229 ARILFEHMPIKDLISWNSMIDGYAKIGDLVAAQQLFNEMPERNVFSWSIMIDGYAQHGNPKEALYLFREMLCQGVRPDVI 308 (586)
Q Consensus 229 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~~~~~ 308 (586)
..+...+-.-+......|+...|..+...+...........+..... +..+...... . .++..
T Consensus 151 ---------~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~---p~~~~~~~~~---~--~~~~~ 213 (450)
T d1qsaa1 151 ---------KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART---T--GATDF 213 (450)
T ss_dssp ---------CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH---S--CCCHH
T ss_pred ---------CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhC---hHhHHHHHhc---C--CCChh
Confidence 12333334445555666777777777776655444444444443322 2222222111 1 22333
Q ss_pred HHHHHHHHHhc--cCChhHHHHHHHHHHHcCCCCchhHH---HHHHHHHHhcCCHHHHHHHHhccC--CCCHhHHHHHHH
Q 007871 309 SVMGAISACAQ--VGALDLGKWIHVFMKRSRITMDMIVQ---TALIDMYMKCGSLDEARRIFYSMT--KKNVISYNVMIA 381 (586)
Q Consensus 309 ~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~ 381 (586)
....+..++.+ ..+.+.+...+............... ..+.......+..+.+...+.... ..+.....-.+.
T Consensus 214 ~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~ 293 (450)
T d1qsaa1 214 TRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR 293 (450)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH
Confidence 32233333322 23556666666665444322111111 111222223445555655554433 233333333444
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHHHHhhcCCHH
Q 007871 382 GLGMNGFGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVDLLSRAGELE 461 (586)
Q Consensus 382 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 461 (586)
.....+++..+...+..|... ......-...+..++...|+.+.|...|..+.. .++ -|..|... +.|..-
T Consensus 294 ~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~----~~~--fYG~LAa~--~Lg~~~ 364 (450)
T d1qsaa1 294 MALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ----QRG--FYPMVAAQ--RIGEEY 364 (450)
T ss_dssp HHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCS--HHHHHHHH--HTTCCC
T ss_pred HHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc----CCC--hHHHHHHH--HcCCCC
Confidence 556678888888888877532 223345567788888999999999999998755 233 44444322 222110
Q ss_pred HHHHHHHhCCCCCCHH-HH---HHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 007871 462 QALNIVESMPMKPNLA-LW---GTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLSNIYADAGMWEHALRIRKMM 536 (586)
Q Consensus 462 ~A~~~~~~~~~~p~~~-~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 536 (586)
.. . .......+... .- ..-+..+...|....|...+..+.+.. ++.-...++....+.|.++.|+....+.
T Consensus 365 ~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 365 EL-K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CC-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CC-C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 00 0 00011111111 11 122344778899999999998887543 5667778899999999999999877665
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.38 E-value=2.4 Score=28.73 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhHHhhCCCCChHHHHHHHH
Q 007871 388 FGEEALKCFAQMETEGIPKDDLIFLGVLIACSHSGLATEGYRIFQSMKRHCGIEPKLEHYSCLVD 452 (586)
Q Consensus 388 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 452 (586)
+.=+..+-++.+....+.|++......+.+|.+.+++..|.++++.++.+++. +...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~--~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 34456666777777789999999999999999999999999999999886543 3556666554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.40 E-value=2.8 Score=28.36 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 007871 470 MPMKPNLALWGTLLLACRNHQNVTLAEVVVEGLVELKADDCGLYVLLS 517 (586)
Q Consensus 470 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 517 (586)
+..-|++....+.+.+|.+.+|+..|.++++.+...-..+...|..+.
T Consensus 35 ~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 35 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 356699999999999999999999999999988876544566666654
|