Citrus Sinensis ID: 007912
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | 2.2.26 [Sep-21-2011] | |||||||
| Q570C0 | 594 | Protein TRANSPORT INHIBIT | yes | no | 0.998 | 0.983 | 0.806 | 0.0 | |
| Q9ZR12 | 585 | GRR1-like protein 1 OS=Ar | no | no | 0.972 | 0.972 | 0.670 | 0.0 | |
| Q9LPW7 | 577 | Protein AUXIN SIGNALING F | no | no | 0.965 | 0.979 | 0.591 | 0.0 | |
| Q0DKP3 | 587 | Transport inhibitor respo | yes | no | 0.964 | 0.960 | 0.630 | 0.0 | |
| Q7XVM8 | 575 | Transport inhibitor respo | yes | no | 0.967 | 0.984 | 0.598 | 0.0 | |
| Q9LW29 | 575 | Protein AUXIN SIGNALING F | no | no | 0.965 | 0.982 | 0.593 | 0.0 | |
| Q2R3K5 | 568 | Transport inhibitor respo | no | no | 0.952 | 0.980 | 0.527 | 1e-167 | |
| Q9LTX2 | 619 | Transport inhibitor respo | no | no | 0.953 | 0.901 | 0.513 | 1e-158 | |
| Q8RWQ8 | 623 | F-box protein FBX14 OS=Ar | no | no | 0.957 | 0.898 | 0.497 | 1e-154 | |
| O04197 | 592 | Coronatine-insensitive pr | no | no | 0.955 | 0.944 | 0.313 | 4e-81 |
| >sp|Q570C0|TIR1_ARATH Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2 | Back alignment and function desciption |
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Score = 964 bits (2493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/585 (80%), Positives = 530/585 (90%), Gaps = 1/585 (0%)
Query: 2 LKKMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIERWCRRRIFVGNCYAVSPRM 61
++K S PE+VLEHVFSF+Q DKDRN +SLVCKSWYEIERWCRR++F+GNCYAVSP
Sbjct: 1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT 60
Query: 62 AIRRFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDE 121
IRRFP+VRSVELKGKPHFADFNLVP+GWGGYVYPWI AM+ Y WLEE++LKRMVVTD+
Sbjct: 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD 120
Query: 122 SLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFP 181
LELIAKSFKNFKVLVLSSCEGFST GLAAIAA C+NLKELDL ESDV+D SG+WLS FP
Sbjct: 121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180
Query: 182 DTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVEL 241
DT TSLVSLNI+CL SEVSFSALERLV RCPNL++L+LNRAVPLEKLA LL++APQL EL
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240
Query: 242 GTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYAT 301
GTG Y+A++RPD++S L+ A SGCKEL+ LSGFWD VPAYLPAVYSVCS LTTLNLSYAT
Sbjct: 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300
Query: 302 IQSPDLIKLVSQCPKLQCLWVLDYIEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLT 361
+QS DL+KL+ QCPKLQ LWVLDYIED+GLE LA+TCKDLRELRVFPSEPF EPNV+LT
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360
Query: 362 EQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPL 421
EQGLV VS GCPKLESVLYFCR+M+N AL+TIA+NRP+M RFRLCII+P+ PDYLTLEPL
Sbjct: 361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420
Query: 422 DVGFGAIVQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGC 481
D+GFGAIV+HCKDLRRLSLSGLLTD+VFEYIGTYAKK+EMLSVAFAG+SDLG+HHVLSGC
Sbjct: 421 DIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480
Query: 482 DSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDE 541
DSLRKLEI DCPFGDKALLANA+KLETMRSLWMSSCSVSF ACKLLGQKMP+LNVEVIDE
Sbjct: 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540
Query: 542 SGPPDSRPE-LPVKKLYIYRTVTGRRIDMPGFVWNVGEDSALRLS 585
G PDSRPE PV++++IYRTV G R DMPGFVWN+ +DS +R S
Sbjct: 541 RGAPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQDSTMRFS 585
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Auxin receptor that mediates Aux/IAA proteins proteasomal degradation and auxin-regulated transcription. The SCF(TIR1) E3 ubiquitin ligase complex is involved in auxin-mediated signaling pathway that regulate root and hypocotyl growth, lateral root formation, cell elongation, and gravitropism. Appears to allow pericycle cells to overcome G2 arrest prior to lateral root development. Plays a role in ethylene signaling in roots. Confers sensitivity to the virulent bacterial pathogen P.syringae. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZR12|GRH1_ARATH GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9LPW7|AFB3_ARATH Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q0DKP3|TIR1A_ORYSJ Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica GN=Os05g0150500 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q7XVM8|TIR1B_ORYSJ Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica GN=Os04g0395600 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LW29|AFB2_ARATH Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q2R3K5|TIRC_ORYSJ Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LTX2|TIR1L_ARATH Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8RWQ8|FBX14_ARATH F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=2 SV=1 | Back alignment and function description |
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| >sp|O04197|COI1_ARATH Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | ||||||
| 261749068 | 586 | transport inhibitor response 1 [Dimocarp | 1.0 | 0.998 | 0.863 | 0.0 | |
| 255559322 | 585 | TRANSPORT INHIBITOR RESPONSE 1 protein, | 0.998 | 0.998 | 0.825 | 0.0 | |
| 109729860 | 586 | transport inhibitor response 1 [Gossypiu | 0.998 | 0.996 | 0.822 | 0.0 | |
| 406368276 | 579 | auxin receptor 1, partial [Fragaria x an | 0.984 | 0.994 | 0.821 | 0.0 | |
| 18412567 | 594 | protein TRANSPORT INHIBITOR RESPONSE 1 [ | 0.998 | 0.983 | 0.806 | 0.0 | |
| 297821212 | 635 | hypothetical protein ARALYDRAFT_907876 [ | 0.984 | 0.907 | 0.814 | 0.0 | |
| 356535497 | 585 | PREDICTED: protein TRANSPORT INHIBITOR R | 0.998 | 0.998 | 0.781 | 0.0 | |
| 319428659 | 591 | F-box/leucine rich repeat protein [Phase | 0.998 | 0.988 | 0.793 | 0.0 | |
| 356505506 | 591 | PREDICTED: LOW QUALITY PROTEIN: protein | 0.998 | 0.988 | 0.796 | 0.0 | |
| 356500258 | 585 | PREDICTED: protein TRANSPORT INHIBITOR R | 0.998 | 0.998 | 0.783 | 0.0 |
| >gi|261749068|gb|ACX31301.2| transport inhibitor response 1 [Dimocarpus longan] | Back alignment and taxonomy information |
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Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/586 (86%), Positives = 547/586 (93%), Gaps = 1/586 (0%)
Query: 1 MLKKMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIERWCRRRIFVGNCYAVSPR 60
MLK+MSYSS PEDVLEHVFSFVQSDKDRN ISLVCKSWYEIERWCRRRIFVGNCYAVSPR
Sbjct: 1 MLKRMSYSSFPEDVLEHVFSFVQSDKDRNAISLVCKSWYEIERWCRRRIFVGNCYAVSPR 60
Query: 61 MAIRRFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTD 120
M IRRFPEVRSVE+KGKPHFADFNLVP+GWGGYVYPWI A GYPWLEE++LKRMVVTD
Sbjct: 61 MVIRRFPEVRSVEMKGKPHFADFNLVPDGWGGYVYPWIAVTASGYPWLEEIRLKRMVVTD 120
Query: 121 ESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKF 180
E+LELIAKSFK+FKVLVLSSCEGFSTHGL AIA++C+NL+ELDL ES+V++ SGNWL+ F
Sbjct: 121 ETLELIAKSFKSFKVLVLSSCEGFSTHGLGAIASNCRNLRELDLRESEVDEVSGNWLNDF 180
Query: 181 PDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVE 240
PDTCTSLVSLNI+CL SEV+FSALERLV R PNLRTLRLNRAVPL+KLA+LL +APQLVE
Sbjct: 181 PDTCTSLVSLNISCLVSEVNFSALERLVGRSPNLRTLRLNRAVPLDKLANLLCRAPQLVE 240
Query: 241 LGTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYA 300
LGTG YSADLRP++FSNL GAFSGCK+LK LSGFWDV AYLPA+Y VCSGLT+LNLSYA
Sbjct: 241 LGTGAYSADLRPEVFSNLVGAFSGCKQLKGLSGFWDVASAYLPAIYPVCSGLTSLNLSYA 300
Query: 301 TIQSPDLIKLVSQCPKLQCLWVLDYIEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSL 360
++QSPDLIKLVSQCP LQ LWVLDYIEDSGLEALAA+CKDL+ELRVFPSEP+G EPNVSL
Sbjct: 301 SVQSPDLIKLVSQCPNLQRLWVLDYIEDSGLEALAASCKDLQELRVFPSEPYGVEPNVSL 360
Query: 361 TEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEP 420
TEQGLV VSEGCPKLESVLYFCRRMSNDAL+TIA+NRP+M RFRLCIIDPQTPDYLT +
Sbjct: 361 TEQGLVCVSEGCPKLESVLYFCRRMSNDALITIARNRPNMTRFRLCIIDPQTPDYLTRQA 420
Query: 421 LDVGFGAIVQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSG 480
LDVGFGAIV+HC+ LRRLSLSGLLTDRVFEYIGTYAKKLEMLS+AFAG+SDLGLHHVLSG
Sbjct: 421 LDVGFGAIVEHCRGLRRLSLSGLLTDRVFEYIGTYAKKLEMLSLAFAGDSDLGLHHVLSG 480
Query: 481 CDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVID 540
C+SLRKLEI DCPFGDKALLANAAKLETMRSLWMSSCSVSF ACKLLGQKMPRLNVEVID
Sbjct: 481 CESLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSFGACKLLGQKMPRLNVEVID 540
Query: 541 ESGPPDSRPE-LPVKKLYIYRTVTGRRIDMPGFVWNVGEDSALRLS 585
E GPPDSRPE PV+KLYIYRTV G R DMPGFVWN+ EDSALR S
Sbjct: 541 ERGPPDSRPESFPVEKLYIYRTVAGPRFDMPGFVWNMDEDSALRFS 586
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Source: Dimocarpus longan Species: Dimocarpus longan Genus: Dimocarpus Family: Sapindaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559322|ref|XP_002520681.1| TRANSPORT INHIBITOR RESPONSE 1 protein, putative [Ricinus communis] gi|223540066|gb|EEF41643.1| TRANSPORT INHIBITOR RESPONSE 1 protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|109729860|gb|ABG46343.1| transport inhibitor response 1 [Gossypium hirsutum] | Back alignment and taxonomy information |
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| >gi|406368276|gb|AFS44506.1| auxin receptor 1, partial [Fragaria x ananassa] | Back alignment and taxonomy information |
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| >gi|18412567|ref|NP_567135.1| protein TRANSPORT INHIBITOR RESPONSE 1 [Arabidopsis thaliana] gi|68053009|sp|Q570C0.2|TIR1_ARATH RecName: Full=Protein TRANSPORT INHIBITOR RESPONSE 1; AltName: Full=Weak ethylene-insensitive protein 1 gi|146387658|pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure gi|146387660|pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase gi|146387663|pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase gi|146387666|pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase gi|146387669|pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase gi|146387671|pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase gi|185177934|pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein- Substrate Interactions In Auxin Perception And Signaling gi|185177936|pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-Substrate Interactions In Auxin Perception And Signaling gi|185177938|pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein- Substrate Interactions In Auxin Perception And Signaling gi|2352492|gb|AAB69175.1| transport inhibitor response 1 [Arabidopsis thaliana] gi|2352494|gb|AAB69176.1| transport inhibitor response 1 [Arabidopsis thaliana] gi|7573427|emb|CAB87743.1| transport inhibitor response 1 (TIR1) [Arabidopsis thaliana] gi|25054937|gb|AAN71945.1| putative transport inhibitor response TIR1, AtFBL1 protein [Arabidopsis thaliana] gi|332646898|gb|AEE80419.1| protein TRANSPORT INHIBITOR RESPONSE 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297821212|ref|XP_002878489.1| hypothetical protein ARALYDRAFT_907876 [Arabidopsis lyrata subsp. lyrata] gi|297324327|gb|EFH54748.1| hypothetical protein ARALYDRAFT_907876 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356535497|ref|XP_003536281.1| PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|319428659|gb|ADV56682.1| F-box/leucine rich repeat protein [Phaseolus vulgaris] | Back alignment and taxonomy information |
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| >gi|356505506|ref|XP_003521531.1| PREDICTED: LOW QUALITY PROTEIN: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356500258|ref|XP_003518950.1| PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 585 | ||||||
| UNIPROTKB|B9S3W2 | 585 | RCOM_0556140 "TRANSPORT INHIBI | 0.998 | 0.998 | 0.825 | 2.3e-268 | |
| UNIPROTKB|A4KA30 | 586 | TIR1 "Transport inhibitor resp | 0.998 | 0.996 | 0.822 | 2.1e-265 | |
| TAIR|locus:2099237 | 594 | TIR1 "AT3G62980" [Arabidopsis | 0.998 | 0.983 | 0.807 | 2e-262 | |
| UNIPROTKB|B9I9W7 | 584 | FBL1 "F-box family protein" [P | 0.996 | 0.998 | 0.805 | 4.9e-259 | |
| UNIPROTKB|B9IBT6 | 584 | FBL2 "F-box family protein" [P | 0.984 | 0.986 | 0.798 | 2.6e-253 | |
| UNIPROTKB|A5ARV5 | 581 | VITISV_038840 "Putative unchar | 0.991 | 0.998 | 0.756 | 1.7e-240 | |
| UNIPROTKB|A5AML2 | 590 | VITISV_036655 "Putative unchar | 0.974 | 0.966 | 0.746 | 7.8e-229 | |
| TAIR|locus:2125527 | 585 | GRH1 "AT4G03190" [Arabidopsis | 0.965 | 0.965 | 0.675 | 3.6e-208 | |
| UNIPROTKB|B0LXW5 | 587 | TIR1 "Transport inhibitor resp | 0.964 | 0.960 | 0.630 | 3.5e-194 | |
| UNIPROTKB|Q0DKP3 | 587 | LOC_Os05g05800 "Transport inhi | 0.964 | 0.960 | 0.630 | 3.5e-194 |
| UNIPROTKB|B9S3W2 RCOM_0556140 "TRANSPORT INHIBITOR RESPONSE 1 protein, putative" [Ricinus communis (taxid:3988)] | Back alignment and assigned GO terms |
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Score = 2581 (913.6 bits), Expect = 2.3e-268, P = 2.3e-268
Identities = 484/586 (82%), Positives = 543/586 (92%)
Query: 1 MLKKMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIERWCRRRIFVGNCYAVSPR 60
ML+ M+ SS PE+VLEHV F+QSDKDRN +S+VCKSWYEIERWCRRRIFVGNCYAVSP
Sbjct: 1 MLRMMA-SSFPEEVLEHVLLFIQSDKDRNAVSMVCKSWYEIERWCRRRIFVGNCYAVSPT 59
Query: 61 MAIRRFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTD 120
M IRRFP+VRS+ELKGKPHFADFNLVPEGWGGYV+PWI AM+ YPWLEE++LKRMVV+D
Sbjct: 60 MVIRRFPDVRSIELKGKPHFADFNLVPEGWGGYVFPWIVAMSSAYPWLEEIRLKRMVVSD 119
Query: 121 ESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKF 180
E+LELI+KSFKNFKVLVLSSCEGFST GLAAIAA+C+NL+ELDL ES+V+DPSG+WLS F
Sbjct: 120 EALELISKSFKNFKVLVLSSCEGFSTGGLAAIAANCRNLRELDLRESEVDDPSGHWLSHF 179
Query: 181 PDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVE 240
PD+ TSLVSLNI+CLGSEVSFSAL+RLV RCPNLRTLRLNRAVPL++LA++LR+APQLVE
Sbjct: 180 PDSFTSLVSLNISCLGSEVSFSALKRLVGRCPNLRTLRLNRAVPLDRLANILRRAPQLVE 239
Query: 241 LGTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYA 300
LGTG YSA+LRPD+FS L+GAFSGCKELKSLSGFWDVVP YLPA+Y +CSGLT+LNLSYA
Sbjct: 240 LGTGAYSAELRPDVFSTLSGAFSGCKELKSLSGFWDVVPGYLPAIYPICSGLTSLNLSYA 299
Query: 301 TIQSPDLIKLVSQCPKLQCLWVLDYIEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSL 360
TIQSPDL+KLVSQC LQ LWVLDYIED GLEALA CKDLRELRVFPS+PFG EPNVSL
Sbjct: 300 TIQSPDLVKLVSQCQSLQRLWVLDYIEDVGLEALATFCKDLRELRVFPSDPFGPEPNVSL 359
Query: 361 TEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEP 420
TEQGLV+VSEGCPKL+SVLYFCR+M+NDAL+TIA+NRP+M RFRLCII+P+ PD +T +P
Sbjct: 360 TEQGLVVVSEGCPKLQSVLYFCRQMTNDALITIARNRPNMTRFRLCIIEPRMPDNVTHQP 419
Query: 421 LDVGFGAIVQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSG 480
LD GFGAIVQ+CKDLRRLSLSGLLTDRVFEYIGT+AKKLEMLSVAFAG+SDLGLHHVLSG
Sbjct: 420 LDDGFGAIVQYCKDLRRLSLSGLLTDRVFEYIGTHAKKLEMLSVAFAGDSDLGLHHVLSG 479
Query: 481 CDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVID 540
C++LRKLEI DCPFGDKALLANAAKLETMRSLWMSSCSVS+ ACKLLGQKMPRLNVEVID
Sbjct: 480 CENLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVID 539
Query: 541 ESGPPDSRPE-LPVKKLYIYRTVTGRRIDMPGFVWNVGEDSALRLS 585
E GPPD+RPE PV+KLYIYR+V G R DMPGFV+ + EDSALR S
Sbjct: 540 ERGPPDTRPESCPVEKLYIYRSVAGPRFDMPGFVYTMDEDSALRFS 585
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| UNIPROTKB|A4KA30 TIR1 "Transport inhibitor response 1" [Gossypium hirsutum (taxid:3635)] | Back alignment and assigned GO terms |
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| TAIR|locus:2099237 TIR1 "AT3G62980" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B9I9W7 FBL1 "F-box family protein" [Populus trichocarpa (taxid:3694)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B9IBT6 FBL2 "F-box family protein" [Populus trichocarpa (taxid:3694)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A5ARV5 VITISV_038840 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A5AML2 VITISV_036655 "Putative uncharacterized protein" [Vitis vinifera (taxid:29760)] | Back alignment and assigned GO terms |
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| TAIR|locus:2125527 GRH1 "AT4G03190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B0LXW5 TIR1 "Transport inhibitor response 1" [Oryza sativa Indica Group (taxid:39946)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q0DKP3 LOC_Os05g05800 "Transport inhibitor response 1-like protein Os05g0150500" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q570C0 | TIR1_ARATH | No assigned EC number | 0.8068 | 0.9982 | 0.9831 | yes | no |
| Q0DKP3 | TIR1A_ORYSJ | No assigned EC number | 0.6304 | 0.9641 | 0.9608 | yes | no |
| Q7XVM8 | TIR1B_ORYSJ | No assigned EC number | 0.5982 | 0.9675 | 0.9843 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase; Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor prote [...] (594 aa) | |||||||||
(Arabidopsis thaliana) | |||||||||||
 | AXR3 | • | • | 0.999 | |||||||
 | IAA7 | • | • | 0.999 | |||||||
 | SKP1 | • | • | 0.999 | |||||||
 | SHY2 | • | • | 0.999 | |||||||
 | ATCUL1 | • | • | 0.998 | |||||||
 | IAA9 | • | • | 0.997 | |||||||
 | ASK2 | • | 0.981 | ||||||||
 | RBX1 | • | • | • | 0.963 | ||||||
 | ATSK11 | • | 0.961 | ||||||||
 | ASK19 | • | 0.961 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 585 | |||
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 1e-06 | |
| smart00256 | 41 | smart00256, FBOX, A Receptor for Ubiquitination Ta | 3e-05 | |
| pfam00646 | 48 | pfam00646, F-box, F-box domain | 7e-05 | |
| pfam12937 | 47 | pfam12937, F-box-like, F-box-like | 2e-04 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 0.002 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 112 KLKRMV------VTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLW 165
KLK+++ + DE L +A+S N +VL L +CE + G+ A+A +C L+ ++L
Sbjct: 53 KLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTINLG 112
Query: 166 E----SDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRC-PNLRTLRLN 220
+ D S LS CT L ++ A G +V+ + L C +L L LN
Sbjct: 113 RHRNGHLITDVS---LSALGKNCTFLQTVGFA--GCDVTDKGVWELASGCSKSLERLSLN 167
Query: 221 RAVPL 225
L
Sbjct: 168 NCRNL 172
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
| >gnl|CDD|201368 pfam00646, F-box, F-box domain | Back alignment and domain information |
|---|
| >gnl|CDD|221867 pfam12937, F-box-like, F-box-like | Back alignment and domain information |
|---|
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 100.0 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.91 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.86 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 99.86 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.86 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.7 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.69 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.65 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.64 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.57 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.54 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.53 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.47 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 99.43 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.41 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.34 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.17 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.14 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.13 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.09 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.03 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.99 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 98.91 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.86 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 98.79 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 98.78 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.64 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.5 | |
| PF00646 | 48 | F-box: F-box domain; InterPro: IPR001810 The F-box | 98.46 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.41 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.39 | |
| smart00256 | 41 | FBOX A Receptor for Ubiquitination Targets. | 98.37 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.24 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.23 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.15 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 98.15 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 98.05 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 97.96 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 97.92 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.88 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 97.79 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.75 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 97.73 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 97.57 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 97.54 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 97.53 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.46 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 97.43 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 97.42 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 97.02 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.96 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 96.95 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 96.86 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 96.81 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 96.66 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.61 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.39 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 96.35 | |
| PLN03215 | 373 | ascorbic acid mannose pathway regulator 1; Provisi | 96.3 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 96.12 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.01 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 95.64 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 95.57 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.48 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 95.4 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.37 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 95.26 | |
| KOG2997 | 366 | consensus F-box protein FBX9 [General function pre | 95.14 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 95.12 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 95.05 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 94.46 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 94.12 | |
| PF13013 | 109 | F-box-like_2: F-box-like domain | 94.05 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 93.81 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 93.64 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 92.43 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 91.4 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 91.35 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 91.01 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 90.65 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 87.1 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 85.96 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 85.75 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 85.49 | |
| KOG3763 | 585 | consensus mRNA export factor TAP/MEX67 [RNA proces | 84.76 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 84.74 |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=254.98 Aligned_cols=371 Identities=24% Similarity=0.409 Sum_probs=258.9
Q ss_pred CCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhh----ccccceeEecCcccCChhHHHhhCCCceEEEecCCCCCCCCC
Q 007912 9 SLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIE----RWCRRRIFVGNCYAVSPRMAIRRFPEVRSVELKGKPHFADFN 84 (585)
Q Consensus 9 ~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~----~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~~~~ 84 (585)
.||+|++.+||++|+ .+.+.+++++|+-|+-.+ .|++..++..-.+..
T Consensus 74 ~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~--------------------------- 125 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD--------------------------- 125 (483)
T ss_pred cCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC---------------------------
Confidence 699999999999999 789999999999999987 344333322111110
Q ss_pred CCcCCCCCcchhHHHHHHccC-CCCcEEEeccc-ccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcEE
Q 007912 85 LVPEGWGGYVYPWIRAMAGGY-PWLEELKLKRM-VVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKEL 162 (585)
Q Consensus 85 ~~~~~~~~~~~~~l~~l~~~~-~~L~~L~l~~~-~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L 162 (585)
.+++..+..++ ..|+.|.+.++ .+.+..+..+...||++++|.+.+|..+++..+..+.+.|++|++|
T Consensus 126 ----------g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l 195 (483)
T KOG4341|consen 126 ----------GGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHL 195 (483)
T ss_pred ----------CcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhh
Confidence 11123333333 35677777775 3566677777778888888888888888888888888888888777
Q ss_pred EcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEEc
Q 007912 163 DLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVELG 242 (585)
Q Consensus 163 ~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 242 (585)
++..|. .+++..++.+...|++|++++++.|..+.
T Consensus 196 ~L~~c~-----------------------------~iT~~~Lk~la~gC~kL~~lNlSwc~qi~---------------- 230 (483)
T KOG4341|consen 196 NLHSCS-----------------------------SITDVSLKYLAEGCRKLKYLNLSWCPQIS---------------- 230 (483)
T ss_pred hhcccc-----------------------------hhHHHHHHHHHHhhhhHHHhhhccCchhh----------------
Confidence 776543 34455555566666666666665554111
Q ss_pred CccccCCCCchhhhhhhhhhhcccccccccCccccCcCchhhHhhcCCCCCEEEeeccc-CCchhHHHHHhcCCCCcEEe
Q 007912 243 TGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYAT-IQSPDLIKLVSQCPKLQCLW 321 (585)
Q Consensus 243 l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~~~L~~L~ 321 (585)
...+..+..++.+++.+.+.+|. ...+.+
T Consensus 231 ------------------------------------~~gv~~~~rG~~~l~~~~~kGC~e~~le~l-------------- 260 (483)
T KOG4341|consen 231 ------------------------------------GNGVQALQRGCKELEKLSLKGCLELELEAL-------------- 260 (483)
T ss_pred ------------------------------------cCcchHHhccchhhhhhhhcccccccHHHH--------------
Confidence 01122222233334444344443 333333
Q ss_pred cccccchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCcee-hhcccCCcHHHHHHHHhhCCCC
Q 007912 322 VLDYIEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESV-LYFCRRMSNDALVTIAKNRPSM 400 (585)
Q Consensus 322 l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L-~~~~~~~~~~~~~~l~~~~~~L 400 (585)
..+..+++.+.++++. .|..++|.++..+..+|..|+.| ..+|.++++..+.++.+++++|
T Consensus 261 ----------~~~~~~~~~i~~lnl~--------~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L 322 (483)
T KOG4341|consen 261 ----------LKAAAYCLEILKLNLQ--------HCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNL 322 (483)
T ss_pred ----------HHHhccChHhhccchh--------hhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCce
Confidence 3333455555566655 45677777777777777777777 4667777777777777777888
Q ss_pred ceeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCC--CCCHHHHHHHHhhccccceeeccccC-CCHHHHHHH
Q 007912 401 IRFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSG--LLTDRVFEYIGTYAKKLEMLSVAFAG-ESDLGLHHV 477 (585)
Q Consensus 401 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~~~~l 477 (585)
+.|.+.. |..++ +.++..+..+++.|+.+++.+ .++|..+..++..|+.|++|.++.|. +||.++..+
T Consensus 323 ~~l~l~~-----c~~fs----d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 323 QVLELSG-----CQQFS----DRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred EEEeccc-----cchhh----hhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 8777755 44566 777777777888888888866 56777788888889999999999997 799988877
Q ss_pred Hh---cCCCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeeccc-CCHHHHHHHHhhCCCcEEEEe
Q 007912 478 LS---GCDSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCS-VSFEACKLLGQKMPRLNVEVI 539 (585)
Q Consensus 478 ~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~l~~~~~~l~~~~~ 539 (585)
.. +...|+.+++++|+.+.+........|++|+.+++.+|+ ++.++++.++.++|+++++..
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 43 357799999999977666666788999999999999996 999999999999999887654
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
| >PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] | Back alignment and domain information |
|---|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
| >smart00256 FBOX A Receptor for Ubiquitination Targets | Back alignment and domain information |
|---|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03215 ascorbic acid mannose pathway regulator 1; Provisional | Back alignment and domain information |
|---|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
| >KOG2997 consensus F-box protein FBX9 [General function prediction only] | Back alignment and domain information |
|---|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
| >PF13013 F-box-like_2: F-box-like domain | Back alignment and domain information |
|---|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
| >KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 585 | ||||
| 2p1m_B | 594 | Tir1-ask1 Complex Structure Length = 594 | 0.0 | ||
| 3ogk_B | 592 | Structure Of Coi1-Ask1 In Complex With Coronatine A | 3e-82 | ||
| 1fqv_A | 336 | Insights Into Scf Ubiquitin Ligases From The Struct | 1e-05 | ||
| 1fs2_A | 272 | Insights Into Scf Ubiquitin Ligases From The Struct | 9e-05 |
| >pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594 | Back alignment and structure |
|
| >pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592 | Back alignment and structure |
| >pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336 | Back alignment and structure |
| >pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 599 bits (1545), Expect = 0.0
Identities = 472/585 (80%), Positives = 530/585 (90%), Gaps = 1/585 (0%)
Query: 2 LKKMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIERWCRRRIFVGNCYAVSPRM 61
++K S PE+VLEHVFSF+Q DKDRN +SLVCKSWYEIERWCRR++F+GNCYAVSP
Sbjct: 1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT 60
Query: 62 AIRRFPEVRSVELKGKPHFADFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDE 121
IRRFP+VRSVELKGKPHFADFNLVP+GWGGYVYPWI AM+ Y WLEE++LKRMVVTD+
Sbjct: 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD 120
Query: 122 SLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWESDVEDPSGNWLSKFP 181
LELIAKSFKNFKVLVLSSCEGFST GLAAIAA C+NLKELDL ESDV+D SG+WLS FP
Sbjct: 121 CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180
Query: 182 DTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVEL 241
DT TSLVSLNI+CL SEVSFSALERLV RCPNL++L+LNRAVPLEKLA LL++APQL EL
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240
Query: 242 GTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYAT 301
GTG Y+A++RPD++S L+ A SGCKEL+ LSGFWD VPAYLPAVYSVCS LTTLNLSYAT
Sbjct: 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300
Query: 302 IQSPDLIKLVSQCPKLQCLWVLDYIEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLT 361
+QS DL+KL+ QCPKLQ LWVLDYIED+GLE LA+TCKDLRELRVFPSEPF EPNV+LT
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360
Query: 362 EQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMIRFRLCIIDPQTPDYLTLEPL 421
EQGLV VS GCPKLESVLYFCR+M+N AL+TIA+NRP+M RFRLCII+P+ PDYLTLEPL
Sbjct: 361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420
Query: 422 DVGFGAIVQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGC 481
D+GFGAIV+HCKDLRRLSLSGLLTD+VFEYIGTYAKK+EMLSVAFAG+SDLG+HHVLSGC
Sbjct: 421 DIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480
Query: 482 DSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDE 541
DSLRKLEI DCPFGDKALLANA+KLETMRSLWMSSCSVSF ACKLLGQKMP+LNVEVIDE
Sbjct: 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540
Query: 542 SGPPDSRPEL-PVKKLYIYRTVTGRRIDMPGFVWNVGEDSALRLS 585
G PDSRPE PV++++IYRTV G R DMPGFVWN+ +DS +R S
Sbjct: 541 RGAPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQDSTMRFS 585
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 | Back alignment and structure |
|---|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 100.0 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 100.0 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.93 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.86 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.85 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 99.85 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 99.84 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.83 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.83 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.83 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.82 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.82 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 99.81 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.81 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 99.81 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.8 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.8 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.79 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.79 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.78 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.78 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.78 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.77 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.76 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.75 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.74 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 99.73 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.73 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.73 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.71 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 99.71 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.69 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.69 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.69 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.68 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.68 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.65 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.64 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.63 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.63 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.63 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.63 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.61 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.6 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.57 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.46 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.45 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.42 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.41 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.39 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.39 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.39 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.38 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.38 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.38 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.37 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.36 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.35 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.3 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.3 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.26 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.26 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.25 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.22 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.22 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.22 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.22 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.22 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.2 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.19 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.19 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.18 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.16 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.16 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.15 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.15 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.15 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.12 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.11 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.1 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.09 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.06 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.05 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 99.04 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.03 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.95 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.94 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 98.92 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 98.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.9 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.85 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 98.85 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 98.85 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.84 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 98.83 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.83 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 98.8 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 98.77 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.75 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.74 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 98.72 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.7 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 98.68 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 98.67 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 98.67 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 98.62 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 98.61 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.61 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.6 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.6 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 98.56 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.53 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 98.49 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.46 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 98.44 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.41 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.4 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.39 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.29 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 98.28 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.27 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 98.26 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.26 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 98.25 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 98.23 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.13 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 98.12 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 98.11 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 98.11 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 98.03 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 97.98 | |
| 2e31_A | 297 | FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui | 97.98 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.96 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 97.94 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 97.92 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.81 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 97.81 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.78 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 97.78 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.66 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.6 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 97.59 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 97.5 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 97.5 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 97.48 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 97.48 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.44 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.4 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 97.35 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.35 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 97.32 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.3 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.26 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 97.19 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 97.16 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 97.15 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 97.01 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 96.97 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.44 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 96.43 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 96.16 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 95.2 |
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-63 Score=525.80 Aligned_cols=583 Identities=80% Similarity=1.338 Sum_probs=510.5
Q ss_pred CcCCCCCCCCHHHHHHHHhccCChHHHHHHHHHhHHHHHhhccccceeEecCcccCChhHHHhhCCCceEEEecCCCCCC
Q 007912 2 LKKMSYSSLPEDVLEHVFSFVQSDKDRNVISLVCKSWYEIERWCRRRIFVGNCYAVSPRMAIRRFPEVRSVELKGKPHFA 81 (585)
Q Consensus 2 ~~~~~i~~LP~ell~~If~~L~~~~~~~~~~~Vcr~W~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~L~l~~~~~~~ 81 (585)
|+++.+++||+|+|.+||+||+..+|+.++++|||+|+++..+.+..+.+..++...+..+..+|+++++|++++++.+.
T Consensus 1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 80 (594)
T 2p1m_B 1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFA 80 (594)
T ss_dssp ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGG
T ss_pred CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchh
Confidence 56788999999999999999997789999999999999998888889999999888899999999999999999999888
Q ss_pred CCCCCcCCCCCcchhHHHHHHccCCCCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHHhcCCCCcE
Q 007912 82 DFNLVPEGWGGYVYPWIRAMAGGYPWLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKE 161 (585)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~ 161 (585)
++...+..|++...+++..+...+++|++|+++++.+++..+..+...+++|++|++.+|..++..++..+..+|++|++
T Consensus 81 ~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~ 160 (594)
T 2p1m_B 81 DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE 160 (594)
T ss_dssp GGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCE
T ss_pred hcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCE
Confidence 88889999999999999999999999999999999999999999987899999999999988888889999889999999
Q ss_pred EEcccCCCCCcccccccccCCCCCcccEEEeccccCcCCHHHHHHHHHhCCCCceEEeCCCCChHHHHHHHhhCCCceEE
Q 007912 162 LDLWESDVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEKLAHLLRQAPQLVEL 241 (585)
Q Consensus 162 L~l~~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 241 (585)
|++++|.+++....++..+...+++|++|+++++...++...+..+...+++|++|++++|....+++..+..+++|++|
T Consensus 161 L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L 240 (594)
T 2p1m_B 161 LDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL 240 (594)
T ss_dssp EECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEE
T ss_pred EeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEc
Confidence 99999998888888888888899999999999875458888899998899999999999998888899999999999999
Q ss_pred cCccccCCCCchhhhhhhhhhhcccccccccCccccCcCchhhHhhcCCCCCEEEeecccCCchhHHHHHhcCCCCcEEe
Q 007912 242 GTGTYSADLRPDIFSNLAGAFSGCKELKSLSGFWDVVPAYLPAVYSVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLW 321 (585)
Q Consensus 242 ~l~~~~~~~~~~~~~~l~~~~~~~~~L~~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~~~L~~L~ 321 (585)
.++.+.....+..+..+...+..|++|+.+++++......++.+...+++|++|++++|.+++..+..++..+++|+.|.
T Consensus 241 ~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~ 320 (594)
T 2p1m_B 241 GTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLW 320 (594)
T ss_dssp ECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred ccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEe
Confidence 99887765555667777778899999999977777777777777778999999999999988888888899999999999
Q ss_pred cccccchhHHHHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHHHHhCCCCCceehhcccCCcHHHHHHHHhhCCCCc
Q 007912 322 VLDYIEDSGLEALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVLVSEGCPKLESVLYFCRRMSNDALVTIAKNRPSMI 401 (585)
Q Consensus 322 l~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~~~~~L~ 401 (585)
+.+++++.++..+...+++|++|++.++.+....++..+++.++..+..++++|++|...|+.+++..+..+...+|+|+
T Consensus 321 l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~ 400 (594)
T 2p1m_B 321 VLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT 400 (594)
T ss_dssp EEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCC
T ss_pred CcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcc
Confidence 99998888899998889999999996543221125678999999999888999999998999999999999998899999
Q ss_pred eeeeeecCCCCCCCCCCCcchhhHHHHhhhCCCCcEEecCCCCCHHHHHHHHhhccccceeeccccCCCHHHHHHHHhcC
Q 007912 402 RFRLCIIDPQTPDYLTLEPLDVGFGAIVQHCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGESDLGLHHVLSGC 481 (585)
Q Consensus 402 ~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~~~~l~~~~ 481 (585)
.|++.+.+...|..++..+.+.++..++..+++|+.|++++.+++.++..+...+++|+.|++++|.+++.++..++.++
T Consensus 401 ~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 480 (594)
T 2p1m_B 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480 (594)
T ss_dssp EEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred eeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence 99999655445777886666788999999999999999999999999999998899999999999999999999988899
Q ss_pred CCCCeEEeeCCCCChHHHHHHHHhcccCCEEEeecccCCHHHHHHHHhhCCCcEEEEecCCCCCC-CCCCCCccEEEEEE
Q 007912 482 DSLRKLEIMDCPFGDKALLANAAKLETMRSLWMSSCSVSFEACKLLGQKMPRLNVEVIDESGPPD-SRPELPVKKLYIYR 560 (585)
Q Consensus 482 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (585)
++|++|++++|.+++.++..+...+++|+.|++++|+++.++++.++..+|++++.++...+..+ ..+.+.+++++.|+
T Consensus 481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (594)
T 2p1m_B 481 DSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPESCPVERVFIYR 560 (594)
T ss_dssp TTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCGGGSCTTSBCSEEEEEE
T ss_pred CCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCccccccccchhhhhhhhh
Confidence 99999999999999998887888899999999999999999999999999999999998764332 34667889999999
Q ss_pred eccCCCCCCCCceeecCCCCcCCC
Q 007912 561 TVTGRRIDMPGFVWNVGEDSALRL 584 (585)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~ 584 (585)
+++++|.|+|.+++++++.++.+.
T Consensus 561 ~~~~~~~~~p~~~~~l~~~~~~~~ 584 (594)
T 2p1m_B 561 TVAGPRFDMPGFVWNMDQDSTMRF 584 (594)
T ss_dssp CSSCSCSCCCTTEEEC--------
T ss_pred ccCCCCCCCCCceEeccCCCCCcc
Confidence 999999999999999999988765
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
| >2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A | Back alignment and structure |
|---|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 585 | ||||
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 | |
| d1fs1a1 | 41 | a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ | 6e-05 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 9e-05 | |
| d1nexb1 | 100 | a.158.1.1 (B:270-369) Cdc4 F-box and linker domain | 6e-04 | |
| d2ovrb1 | 102 | a.158.1.1 (B:2263-2364) F-box/WD repeat-containing | 6e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.001 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (127), Expect = 2e-08
Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 9/236 (3%)
Query: 108 LEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIAADCKNLKELDLWES 167
+ + R + E S + + LS+ L I + C L+ L L
Sbjct: 25 VIAFRCPRSFMDQPLAEHF--SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGL 81
Query: 168 DVEDPSGNWLSKFPDTCTSLVSLNIACLGSEVSFSALERLVVRCPNLRTLRLNRAVPLEK 227
+ DP N L+K ++LV LN++ S AL+ L+ C L L L+ +
Sbjct: 82 RLSDPIVNTLAK----NSNLVRLNLSGCSG-FSEFALQTLLSSCSRLDELNLSWCFDFTE 136
Query: 228 LAHLLRQAPQLVELGTGTYSADLRPDIFSNLAGAFSGCKEL-KSLSGFWDVVPAYLPAVY 286
+ A + S + S+L+ C L ++ +
Sbjct: 137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 196
Query: 287 SVCSGLTTLNLSYATIQSPDLIKLVSQCPKLQCLWVLDYIEDSGLEALAATCKDLR 342
+ L L+LS P+ + + + P L+ L V + D L+ L L+
Sbjct: 197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 | Back information, alignment and structure |
|---|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 | Back information, alignment and structure |
|---|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 585 | |||
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.9 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.86 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.85 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.84 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.68 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.61 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.47 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.26 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 99.15 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.9 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.8 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.72 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.68 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.66 | |
| d1nexb1 | 100 | Cdc4 F-box and linker domains {Baker's yeast (Sacc | 98.65 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 98.64 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.64 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.64 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 98.62 | |
| d2ovrb1 | 102 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.61 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.6 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 98.6 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.58 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.58 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.56 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.54 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.5 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 98.46 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 98.42 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 98.42 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.38 | |
| d1p22a1 | 118 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.37 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 98.35 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.33 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 98.31 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 98.31 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.18 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 97.97 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.93 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 97.65 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 97.54 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.45 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 97.44 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.4 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 96.83 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 95.91 |
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.4e-21 Score=194.99 Aligned_cols=407 Identities=18% Similarity=0.184 Sum_probs=242.5
Q ss_pred CCcEEEecccccChHHHHHHHHhCCCCcEEeecccCCCCHHHHHHHH---hcCCCCcEEEcccCCCCCccccccccc-CC
Q 007912 107 WLEELKLKRMVVTDESLELIAKSFKNFKVLVLSSCEGFSTHGLAAIA---ADCKNLKELDLWESDVEDPSGNWLSKF-PD 182 (585)
Q Consensus 107 ~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~---~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~ 182 (585)
+|+.|+++++.+++..+..+...++++++|+|.+| ++++.++..++ ..+++|++|++++|.+++.+...+... ..
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 46667777777777666666666677777777766 46665544433 456677777777666655544444322 22
Q ss_pred CCCcccEEEeccccCcCCHHHHHHH---HHhCCCCceEEeCCCCChH-HHHHHHhhC----CCceEEcCccccCCCCchh
Q 007912 183 TCTSLVSLNIACLGSEVSFSALERL---VVRCPNLRTLRLNRAVPLE-KLAHLLRQA----PQLVELGTGTYSADLRPDI 254 (585)
Q Consensus 183 ~~~~L~~L~l~~~~~~~~~~~l~~l---~~~~~~L~~L~l~~~~~~~-~~~~~~~~~----~~L~~L~l~~~~~~~~~~~ 254 (585)
..++|++|+++++ .+++.++..+ ...+++|++|+++++.-.. ++..+.... .............. ...
T Consensus 82 ~~~~L~~L~L~~n--~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~~ 157 (460)
T d1z7xw1 82 PSCKIQKLSLQNC--CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS--AAS 157 (460)
T ss_dssp TTCCCCEEECTTS--CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB--GGG
T ss_pred CCCCCCEEECCCC--Cccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccc--hhh
Confidence 2346777777766 4555443333 3345667777776654222 122111111 11112211111110 111
Q ss_pred hhhhhhhhhccccccccc-CccccCcCchhh----HhhcCCCCCEEEeecccCCchh---HHHHHhcCCCCcEEecccc-
Q 007912 255 FSNLAGAFSGCKELKSLS-GFWDVVPAYLPA----VYSVCSGLTTLNLSYATIQSPD---LIKLVSQCPKLQCLWVLDY- 325 (585)
Q Consensus 255 ~~~l~~~~~~~~~L~~L~-~~~~~~~~~l~~----~~~~~~~L~~L~L~~~~~~~~~---l~~l~~~~~~L~~L~l~~~- 325 (585)
...+.......+.++.+. ............ +.........+++..+...... ........+.++.+.+..+
T Consensus 158 ~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~ 237 (460)
T d1z7xw1 158 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 237 (460)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred hcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcc
Confidence 112222222233333322 111111111111 1223345667777777643333 3344556788888888875
Q ss_pred cchhHH----HHHHhcCCCCceEEeccCCCCCCCCCCCcchHHHHH---HHhCCCCCceehhcccCCcHHHHHHHHhh--
Q 007912 326 IEDSGL----EALAATCKDLRELRVFPSEPFGDEPNVSLTEQGLVL---VSEGCPKLESVLYFCRRMSNDALVTIAKN-- 396 (585)
Q Consensus 326 ~~~~~~----~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~l~~---l~~~~~~L~~L~~~~~~~~~~~~~~l~~~-- 396 (585)
..+.++ .........++.+++++ ..+....... .....+.++.+...++.+++.+...+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~l~~l~l~~---------n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~ 308 (460)
T d1z7xw1 238 LGDVGMAELCPGLLHPSSRLRTLWIWE---------CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 308 (460)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTT---------SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred ccccccchhhccccccccccccccccc---------ccccccccccccccccccccccccccccccccccccchhhcccc
Confidence 333322 23333567899999984 2444443322 22347888888777788888888777543
Q ss_pred --CCCCceeeeeecCCCCCCCCCCCcchhh---HHHHhhhCCCCcEEecCC-CCCHHHHHHHHhh----ccccceeeccc
Q 007912 397 --RPSMIRFRLCIIDPQTPDYLTLEPLDVG---FGAIVQHCKDLRRLSLSG-LLTDRVFEYIGTY----AKKLEMLSVAF 466 (585)
Q Consensus 397 --~~~L~~L~L~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~L~l~~-~~~~~~~~~l~~~----~~~L~~L~l~~ 466 (585)
.+.|+.+.+.++. ++ +.+ +......+++|++|+|++ .+++.++..+... .+.|++|+|++
T Consensus 309 ~~~~~L~~l~l~~~~------l~----~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~ 378 (460)
T d1z7xw1 309 EPGCQLESLWVKSCS------FT----AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 378 (460)
T ss_dssp STTCCCCEEECTTSC------CB----GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ccccccccccccccc------hh----hhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCC
Confidence 3578888887542 33 333 445567788999999988 7888888877643 45699999999
Q ss_pred cCCCHHHHHHHH---hcCCCCCeEEeeCCCCChHHHHHHHHhc----ccCCEEEeecccCCHHHHHHH---HhhCCCcEE
Q 007912 467 AGESDLGLHHVL---SGCDSLRKLEIMDCPFGDKALLANAAKL----ETMRSLWMSSCSVSFEACKLL---GQKMPRLNV 536 (585)
Q Consensus 467 ~~i~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~l~~~~i~~~~~~~l---~~~~~~l~~ 536 (585)
|.|++.++.+++ ..+++|++|++++|+++++++..+...+ ..|+.|++.++.+..+..+.+ .+..|++++
T Consensus 379 n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~ 458 (460)
T d1z7xw1 379 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRV 458 (460)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEE
T ss_pred CCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 999998887764 4579999999999999999988776554 379999999999877665544 667888776
Q ss_pred E
Q 007912 537 E 537 (585)
Q Consensus 537 ~ 537 (585)
.
T Consensus 459 ~ 459 (460)
T d1z7xw1 459 I 459 (460)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
| >d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|