Citrus Sinensis ID: 007956

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580---
MEVRRRSIAAAKPVHSKTIEEEETHAQLPLPLYIINALFFTLFFTVVYYLLSRWREKIRNSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQSILRPSADVWASEDLEEEDSHVIIKDDSRNLPCGQALDCSHVMTLPQPQPQPQPLPSLIIDHDPNTLTFTTEEDEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNRSSKDVTKASS
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccEEEEEcccEEEccEEEccEEEEEEccccccHHHHHHHHHHHHHHHccccEEEEEcccEEEccEEEEccHHHHHHHHHHcccccccccHHHHHccccccEEEEEEEEEEEccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccEEEEEccccEEEcEEEEcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHccccEEEEEEEEcccccEEEEEEcccEEEEEEccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccc
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHEcccccccccccccccccHHEEccccccccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHcccccccHHHHcccccccEEEEEEEEEEEEEEEEEccEEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEEEEEEEccEEEcccHHHHHHHHHHHccHHHHHHHHHHHHcccccEEEEEEEEEEEccEEEEEEEEEEccEccHHHHHHHHHHHHHHHHHHccccEEEEccccccccccccHHHHHHccEEEEEEEEEEcHHHHHHcccccHHHHHHHHHHHHcHHHHHcccccEEcccHHHHHHHHHHHccccHHHHHHHccEEEEEEEcccccEEEEEEEEEEEccccEcHHHHcHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccc
MEVRRrsiaaakpvhsktieeeethaqlplpLYIINALFFTLFFTVVYYLLSRWRekirnstplHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQSilrpsadvwasedleeedshviikddsrnlpcgqaldcshvmtlpqpqpqpqplpsliidhdpntltftteEDEEMIKSVvdgttpsyslesklgDCRRAAAIRREALQRstgkslhglplegfdygsilgqccempvgyvqipvgiagpllldgreysvpmattegclvasanrgckaihlsggatsvllkdgmtrapvvrfgSAKRAAELKLFlenpvnfdplsmvfnKSSRFARLQAIKCAIAGKNLYLRFTCstgdamgmnMVSKGVQNVLDFLQaefpdmdvigisgnfcsdkkpaavnwiegrgksVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIatgqdpaqnvessHCITMMEAindgkdlhvsvtmpsievgtvgggtqLASQSACLNLLgvkgankespganSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKynrsskdvtkass
mevrrrsiaaakpvhsktieeeethaqlpLPLYIINALFFTLFFTVVYYLLSRWREKIRNSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQSILRPSADVWASEDLEEEDSHVIIKDDSRNLPCGQALDCSHVMTLPQPQPQPQPLPSLIIDHDPNTLTFTTEEDEEMIKSvvdgttpsyslesklgDCRRAAAIRREALqrstgkslhglpLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEaiikgdvvrkVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKshmkynrsskdvtkass
MEVRRRSIAAAKPVHSKTIEEEETHAQLPLPLYIINALFFTLFFTVVYYLLSRWREKIRNSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQSILRPSADVWASEDLEEEDSHVIIKDDSRNLPCGQALDCSHVMTlpqpqpqpqplpSLIIDHDPNTLTFTTEEDEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNRSSKDVTKASS
**************************QLPLPLYIINALFFTLFFTVVYYLLSRWREKIRNSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQSILRPSADVWASE*******HVIIKD***NLPCGQALDCSHV*************************************************************************SLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKG*********SRLLATIVAGSVLAGELSLMSALAAGQLV******************
*******************************LYIINALFFTLFFTVVYYLLSRWREKIRNSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQSI************************************************************************EEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGA*K****ANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYN***********
***********************THAQLPLPLYIINALFFTLFFTVVYYLLSRWREKIRNSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQSILRPSADVWASEDLEEEDSHVIIKDDSRNLPCGQALDCSHVMTLPQPQPQPQPLPSLIIDHDPNTLTFTTEEDEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMK*************
*************************AQLPLPLYIINALFFTLFFTVVYYLLSRWREKIRNSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQSILRPS************DS***IK******P*********************PLPSLIIDHDPNTLTFTTEEDEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSH***************
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
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MEVRRRSIAAAKPVHSKTIEEEETHAQLPLPLYIINALFFTLFFTVVYYLLSRWREKIRNSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQSILRPSADVWASEDLEEEDSHVIIKDDSRNLPCGQALDCSHVMTLPQPQPQPQPLPSLIIDHDPNTLTFTTEEDEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNRSSKDVTKASS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query583 2.2.26 [Sep-21-2011]
O64967628 3-hydroxy-3-methylglutary N/A no 0.993 0.921 0.75 0.0
O64966585 3-hydroxy-3-methylglutary N/A no 0.974 0.970 0.805 0.0
Q01559604 3-hydroxy-3-methylglutary N/A no 0.994 0.960 0.744 0.0
P29057575 3-hydroxy-3-methylglutary N/A no 0.963 0.977 0.775 0.0
P48020596 3-hydroxy-3-methylglutary N/A no 0.989 0.968 0.736 0.0
Q9XEL8604 3-hydroxy-3-methylglutary N/A no 0.994 0.960 0.736 0.0
P48021593 3-hydroxy-3-methylglutary N/A no 0.979 0.962 0.747 0.0
P48022602 3-hydroxy-3-methylglutary N/A no 0.939 0.910 0.754 0.0
Q41438574 3-hydroxy-3-methylglutary N/A no 0.960 0.975 0.722 0.0
Q03163601 3-hydroxy-3-methylglutary N/A no 0.943 0.915 0.743 0.0
>sp|O64967|HMDH2_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Gossypium hirsutum GN=HMG2 PE=3 SV=1 Back     alignment and function desciption
 Score =  937 bits (2421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/632 (75%), Positives = 522/632 (82%), Gaps = 53/632 (8%)

Query: 1   MEVRRRSIAAAKPV-------HSKTIEEEETHAQ--LPLPLYIINALFFTLFFTVVYYLL 51
           ME  RRS  A KPV           +E+    A   LPLPLY+ NA+FFTLFFTVVY+LL
Sbjct: 1   MEASRRS--AVKPVIVLKPSKRFPLVEDTPGKASDALPLPLYLTNAVFFTLFFTVVYFLL 58

Query: 52  SRWREKIRNSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQS-ILRPSADVWASEDL 110
           SRWREKIR S PLH VT  E+VAI AFVAS IYLLGFFGIDFVQS I+RPS DVW+ ED 
Sbjct: 59  SRWREKIRASIPLHAVTFPEIVAIFAFVASLIYLLGFFGIDFVQSLIIRPSGDVWSGEDY 118

Query: 111 EEEDSHVIIKDDSRNLPCGQALDCSHVMTLPQPQ-------------------------- 144
           EEE+  ++ ++D+R +PCGQALDCS V +LP                             
Sbjct: 119 EEENEVLLHEEDARTVPCGQALDCS-VPSLPHMARNVTAQRLFDEKPVRVATEEDARKVS 177

Query: 145 -------------PQPQPLPSLIIDHDPNTLTFTTEEDEEMIKSVVDGTTPSYSLESKLG 191
                        P+P  + S  + H+  T+  TTEEDEE+IKSVV GT PSYSLESKLG
Sbjct: 178 CGQAVDCSLHSLPPRPPIVTSQKLFHE-KTVIVTTEEDEEIIKSVVAGTLPSYSLESKLG 236

Query: 192 DCRRAAAIRREALQRSTGKSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDG 251
           DC+RAAAIRREALQR TG+SL GLPL+GFDY SILGQCCEMPVGYVQIPVGIAGPLLL+G
Sbjct: 237 DCKRAAAIRREALQRLTGRSLSGLPLDGFDYESILGQCCEMPVGYVQIPVGIAGPLLLNG 296

Query: 252 REYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLF 311
           REYSVPMATTEGCLVAS NRGCKAIHLSGGATS+LLKDGMTRAPVVRF +AKRAAELK +
Sbjct: 297 REYSVPMATTEGCLVASTNRGCKAIHLSGGATSILLKDGMTRAPVVRFSTAKRAAELKFY 356

Query: 312 LENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVL 371
           LE+P NFD L++VFN+SSRF RLQ+IKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVL
Sbjct: 357 LEDPENFDTLAVVFNRSSRFGRLQSIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVL 416

Query: 372 DFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGDVVRKVLKTNVDAL 431
           DFLQ +FPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAII+GDVVRKVLKT+V++L
Sbjct: 417 DFLQTDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIEGDVVRKVLKTSVESL 476

Query: 432 VELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAINDGK 491
           VELNMLKNLTGSAMAGALGGFNAHASNIVTA+YIATGQDPAQNVESSHCITMMEA+NDGK
Sbjct: 477 VELNMLKNLTGSAMAGALGGFNAHASNIVTAIYIATGQDPAQNVESSHCITMMEAVNDGK 536

Query: 492 DLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAG 551
           DLH+SVTMPSIEVGTVGGGTQLASQSACLNLLGVKGA+K+  GANSR+LATIV G+VLAG
Sbjct: 537 DLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDVAGANSRMLATIVTGAVLAG 596

Query: 552 ELSLMSALAAGQLVKSHMKYNRSSKDVTKASS 583
           ELSLMSALAAGQLVKSHMKYNRSSKD++  SS
Sbjct: 597 ELSLMSALAAGQLVKSHMKYNRSSKDMSNLSS 628
Catalyzes the synthesis of mevalonate. The specific precursor of all isoprenoid compounds present in plants.
Gossypium hirsutum (taxid: 3635)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 4
>sp|O64966|HMDH1_GOSHI 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Gossypium hirsutum GN=HMG1 PE=3 SV=1 Back     alignment and function description
>sp|Q01559|HMDH_NICSY 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Nicotiana sylvestris GN=HMGR PE=2 SV=1 Back     alignment and function description
>sp|P29057|HMDH1_HEVBR 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Hevea brasiliensis GN=HMGR1 PE=2 SV=1 Back     alignment and function description
>sp|P48020|HMDH1_SOLTU 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 OS=Solanum tuberosum GN=HMG1 PE=2 SV=1 Back     alignment and function description
>sp|Q9XEL8|HMDH2_CAPAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Capsicum annuum GN=HMGR2 PE=2 SV=1 Back     alignment and function description
>sp|P48021|HMDH_CAMAC 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Camptotheca acuminata PE=3 SV=1 Back     alignment and function description
>sp|P48022|HMDH2_SOLLC 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 OS=Solanum lycopersicum GN=HMG2 PE=3 SV=1 Back     alignment and function description
>sp|Q41438|HMDH3_SOLTU 3-hydroxy-3-methylglutaryl-coenzyme A reductase 3 OS=Solanum tuberosum GN=HMG3 PE=2 SV=1 Back     alignment and function description
>sp|Q03163|HMDH_CATRO 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Catharanthus roseus GN=HMGR PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query583
357240557568 3-hydroxy-3-methylglutaryl coenzyme A re 0.970 0.996 0.805 0.0
357240553568 3-hydroxy-3-methylglutaryl coenzyme A re 0.970 0.996 0.808 0.0
449475682597 PREDICTED: 3-hydroxy-3-methylglutaryl-co 0.958 0.936 0.791 0.0
449444433597 PREDICTED: 3-hydroxy-3-methylglutaryl-co 0.958 0.936 0.789 0.0
449453650582 PREDICTED: 3-hydroxy-3-methylglutaryl-co 0.982 0.984 0.786 0.0
11132838628 RecName: Full=3-hydroxy-3-methylglutaryl 0.993 0.921 0.75 0.0
11132836585 RecName: Full=3-hydroxy-3-methylglutaryl 0.974 0.970 0.805 0.0
164604970606 hydroxymethylglutaryl-CoA reductase [Hev 0.996 0.958 0.776 0.0
67483357585 3-hydroxy-methylglutaryl coenzyme A redu 0.987 0.984 0.797 0.0
144952796567 3-hydroxy-3-methylglutaryl coenzyme A re 0.946 0.973 0.778 0.0
>gi|357240557|gb|AET72045.1| 3-hydroxy-3-methylglutaryl coenzyme A reductase 2 [Dimocarpus longan] Back     alignment and taxonomy information
 Score =  963 bits (2489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/585 (80%), Positives = 515/585 (88%), Gaps = 19/585 (3%)

Query: 1   MEVRRRSIAAAKPVHSKTIE-EEETHAQLPLPLYIINALFFTLFFTVVYYLLSRWREKIR 59
           ME RRRS +    + +K ++   +    LPLPLYI NA+F TLFFTVVYYLLSRWREK+R
Sbjct: 1   MEPRRRSASKQSHLDAKALDGTTKASDALPLPLYITNAVFLTLFFTVVYYLLSRWREKVR 60

Query: 60  NSTPLHVVTLSEMVAIVAFVASCIYLLGFFGIDFVQSIL-RPSADVWASEDLEEEDSHVI 118
            STPLHVVT+SEM AIVAFVASCIYLLGFFGIDFVQS+L RPS+++W      EE+  VI
Sbjct: 61  TSTPLHVVTMSEMGAIVAFVASCIYLLGFFGIDFVQSLLFRPSSEMWT-----EEEDEVI 115

Query: 119 IKDDSRNLPCGQALDCSHVMTLPQPQPQPQPLPSLIIDHDPNTLTFTTEEDEEMIKSVVD 178
           IK+DSR LPCGQALDCS V   P    +  P+            +FT+E+DEE++KSVV+
Sbjct: 116 IKEDSRQLPCGQALDCSLVTAKPVKVIETVPV------------SFTSEDDEEIVKSVVE 163

Query: 179 GTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLHGLPLEGFDYGSILGQCCEMPVGYVQ 238
           GTTPSYSLESKLGDCRRAA IRREALQR TGKSL GLPL+GFDY SILGQCCEMPVGYVQ
Sbjct: 164 GTTPSYSLESKLGDCRRAAGIRREALQRLTGKSLAGLPLDGFDYESILGQCCEMPVGYVQ 223

Query: 239 IPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVR 298
           IPVGIAGPLLLDG E+SVPMATTEGCLVAS NRGCKAIHLSGGA+SV+ +DGMTRAPVVR
Sbjct: 224 IPVGIAGPLLLDGTEFSVPMATTEGCLVASTNRGCKAIHLSGGASSVVFRDGMTRAPVVR 283

Query: 299 FGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAM 358
           FG+AKRAAELK FLENP NF+ LS++FNKSSRF RLQ IKCAIAGKNLY+RF CSTGDAM
Sbjct: 284 FGTAKRAAELKFFLENPANFETLSVIFNKSSRFGRLQNIKCAIAGKNLYIRFCCSTGDAM 343

Query: 359 GMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGD 418
           GMNMVSKGVQNV+D+LQ EFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGD
Sbjct: 344 GMNMVSKGVQNVMDYLQEEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGD 403

Query: 419 VVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESS 478
           VVRKVLKTNV+ LVELNMLKNLTGS MAGALGGFNAHASNIVTAVY+ATGQDPAQNVESS
Sbjct: 404 VVRKVLKTNVEVLVELNMLKNLTGSVMAGALGGFNAHASNIVTAVYLATGQDPAQNVESS 463

Query: 479 HCITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSR 538
           HCITMMEA+NDGKDLHVSVTMPSIEVGTVGGGTQL SQSACLNLLGVKGA++E PGANSR
Sbjct: 464 HCITMMEAVNDGKDLHVSVTMPSIEVGTVGGGTQLPSQSACLNLLGVKGASREVPGANSR 523

Query: 539 LLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNRSSKDVTKASS 583
           LLATIVAGSVLAGELSL+SALAAGQLV+SHMKYNRSSKD++K SS
Sbjct: 524 LLATIVAGSVLAGELSLLSALAAGQLVRSHMKYNRSSKDMSKVSS 568

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357240553|gb|AET72043.1| 3-hydroxy-3-methylglutaryl coenzyme A reductase 2 [Litchi chinensis] Back     alignment and taxonomy information
>gi|449475682|ref|XP_004154522.1| PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449444433|ref|XP_004139979.1| PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449453650|ref|XP_004144569.1| PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|11132838|sp|O64967.1|HMDH2_GOSHI RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 2; Short=HMG-CoA reductase 2 gi|2935300|gb|AAC05089.1| 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|11132836|sp|O64966.1|HMDH1_GOSHI RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 gi|2935298|gb|AAC05088.1| 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|164604970|dbj|BAF98281.1| hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|67483357|gb|AAY68034.1| 3-hydroxy-methylglutaryl coenzyme A reductase [Tilia miqueliana] Back     alignment and taxonomy information
>gi|144952796|gb|ABP04052.1| 3-hydroxy-3-methylglutaryl coenzyme A reductase [Corylus avellana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query583
TAIR|locus:2827622562 HMG2 "3-hydroxy-3-methylglutar 0.778 0.807 0.735 3.3e-206
DICTYBASE|DDB_G0276615526 hmgB "hydroxymethylglutaryl Co 0.627 0.695 0.672 2.8e-135
DICTYBASE|DDB_G0269142552 hmgA "hmg CoA reductase A" [Di 0.696 0.735 0.610 9.8e-135
SGD|S0000045401054 HMG1 "HMG-CoA reductase" [Sacc 0.710 0.392 0.581 1e-128
ZFIN|ZDB-GENE-040401-2884 hmgcra "3-hydroxy-3-methylglut 0.708 0.467 0.581 9.6e-128
UNIPROTKB|F1S2I4887 HMGCR "3-hydroxy-3-methylgluta 0.696 0.457 0.591 4.2e-127
UNIPROTKB|A7Z064888 HMGCR "3-hydroxy-3-methylgluta 0.696 0.457 0.586 6.8e-127
UNIPROTKB|E2R9Z3904 HMGCR "Uncharacterized protein 0.696 0.449 0.589 8.7e-127
MGI|MGI:96159887 Hmgcr "3-hydroxy-3-methylgluta 0.696 0.457 0.591 1.8e-126
UNIPROTKB|E1C420883 HMGCR "Uncharacterized protein 0.696 0.459 0.594 2.9e-126
TAIR|locus:2827622 HMG2 "3-hydroxy-3-methylglutaryl-CoA reductase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1739 (617.2 bits), Expect = 3.3e-206, Sum P(2) = 3.3e-206
 Identities = 345/469 (73%), Positives = 395/469 (84%)

Query:   114 DSHVIIKDDSRNLPCGQALDCSHVMTXXXXXXXXXXXXSLIIDHDPNTLTFTTEEDEEMI 173
             D  V + D    +PC Q+LDC  V+                +D  P      + EDEE++
Sbjct:   105 DDDVWVNDGM--IPCNQSLDCREVLPIKPNS----------VD-PPRESELDSVEDEEIV 151

Query:   174 KSVVDGTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLHGLPLEGFDYGSILGQCCEMP 233
             K V+DGT PSYSLE+KLGDC+RAAAIRREA+QR TGKSL GLPLEGFDY SILGQCCEMP
Sbjct:   152 KLVIDGTIPSYSLETKLGDCKRAAAIRREAVQRITGKSLTGLPLEGFDYNSILGQCCEMP 211

Query:   234 VGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTR 293
             VGYVQIPVGIAGPLLLDG EYSVPMATTEGCLVAS NRG KAIHLSGGA SVL+KD MTR
Sbjct:   212 VGYVQIPVGIAGPLLLDGVEYSVPMATTEGCLVASTNRGFKAIHLSGGAFSVLVKDAMTR 271

Query:   294 APVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCS 353
             APVVRF SA+RAA +  +L++P NF+ LS++FNKSSRFARLQ+I C IAG+NLY RF CS
Sbjct:   272 APVVRFPSARRAALVMFYLQDPSNFERLSLIFNKSSRFARLQSITCTIAGRNLYPRFACS 331

Query:   354 TGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEA 413
             TGDAMGMNMVSKGVQNVLDF+++EFPDMDVIGISGN+CSDKK +AVNWIEGRGK VVCEA
Sbjct:   332 TGDAMGMNMVSKGVQNVLDFVKSEFPDMDVIGISGNYCSDKKASAVNWIEGRGKHVVCEA 391

Query:   414 IIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQ 473
              IK ++V KVLKT+V+ALVELN LKNL GSAMAG+LGGFNAH+SNIV+AV+IATGQDPAQ
Sbjct:   392 FIKAEIVEKVLKTSVEALVELNTLKNLVGSAMAGSLGGFNAHSSNIVSAVFIATGQDPAQ 451

Query:   474 NVESSHCITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESP 533
             NVESSHC+TM+  + DG DLH+SV+MP IEVGTVGGGTQLASQ+ACLNLLGVKG+N E P
Sbjct:   452 NVESSHCMTMI--LPDGDDLHISVSMPCIEVGTVGGGTQLASQAACLNLLGVKGSNNEKP 509

Query:   534 GANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNRSSKDVTKAS 582
             G+N++ LA IVAGSVLAGELSLMSA+AAGQLVKSHMKYNRSS+D+  +S
Sbjct:   510 GSNAQQLARIVAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSRDIGPSS 558
GO:0004420 "hydroxymethylglutaryl-CoA reductase (NADPH) activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;TAS
GO:0015936 "coenzyme A metabolic process" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0050661 "NADP binding" evidence=IEA
GO:0050662 "coenzyme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0016104 "triterpenoid biosynthetic process" evidence=IMP
GO:0016126 "sterol biosynthetic process" evidence=IMP
GO:0042282 "hydroxymethylglutaryl-CoA reductase activity" evidence=ISS
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
DICTYBASE|DDB_G0276615 hmgB "hydroxymethylglutaryl CoA reductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269142 hmgA "hmg CoA reductase A" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
SGD|S000004540 HMG1 "HMG-CoA reductase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040401-2 hmgcra "3-hydroxy-3-methylglutaryl-Coenzyme A reductase a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1S2I4 HMGCR "3-hydroxy-3-methylglutaryl-coenzyme A reductase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A7Z064 HMGCR "3-hydroxy-3-methylglutaryl-coenzyme A reductase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R9Z3 HMGCR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:96159 Hmgcr "3-hydroxy-3-methylglutaryl-Coenzyme A reductase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C420 HMGCR "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q41437HMDH2_SOLTU1, ., 1, ., 1, ., 3, 40.70330.97420.9546N/Ano
Q41438HMDH3_SOLTU1, ., 1, ., 1, ., 3, 40.72220.96050.9756N/Ano
Q00583HMDH3_HEVBR1, ., 1, ., 1, ., 3, 40.74680.92450.9197N/Ano
Q01559HMDH_NICSY1, ., 1, ., 1, ., 3, 40.74460.99480.9602N/Ano
Q9XEL8HMDH2_CAPAN1, ., 1, ., 1, ., 3, 40.73640.99480.9602N/Ano
P29057HMDH1_HEVBR1, ., 1, ., 1, ., 3, 40.77520.96390.9773N/Ano
Q03163HMDH_CATRO1, ., 1, ., 1, ., 3, 40.74330.94330.9151N/Ano
Q9XHL5HMDH3_ORYSJ1, ., 1, ., 1, ., 3, 40.70500.92620.9625yesno
P43256HMDH2_ARATH1, ., 1, ., 1, ., 3, 40.71090.89870.9323nono
O24594HMDH_MAIZE1, ., 1, ., 1, ., 3, 40.66900.94330.9499N/Ano
P34135HMDH1_DICDI1, ., 1, ., 1, ., 3, 40.60630.70150.7409yesno
P48020HMDH1_SOLTU1, ., 1, ., 1, ., 3, 40.73620.98970.9681N/Ano
P48021HMDH_CAMAC1, ., 1, ., 1, ., 3, 40.74710.97940.9629N/Ano
P48022HMDH2_SOLLC1, ., 1, ., 1, ., 3, 40.75480.93990.9102N/Ano
A2X8W3HMDH1_ORYSI1, ., 1, ., 1, ., 3, 40.75960.71350.7717N/Ano
O64966HMDH1_GOSHI1, ., 1, ., 1, ., 3, 40.80510.97420.9709N/Ano
O64967HMDH2_GOSHI1, ., 1, ., 1, ., 3, 40.750.99310.9219N/Ano
P14891HMDH1_ARATH1, ., 1, ., 1, ., 3, 40.72190.94160.9273yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.998
3rd Layer1.1.1.340.994

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_IX0010
hypothetical protein (589 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.70.604.1
SubName- Full=Putative uncharacterized protein; (379 aa)
     •• 0.914
eugene3.00010972
SubName- Full=Putative uncharacterized protein; (465 aa)
     •• 0.906
grail3.0018023901
3-hydroxy-3-methylglutaryl coenzyme A synthase (EC-2.3.3.10) (465 aa)
     •• 0.906
gw1.III.1750.1
3-hydroxy-3-methylglutaryl coenzyme A synthase (253 aa)
     •  0.900
estExt_Genewise1_v1.C_LG_XIII1046
hypothetical protein (219 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
cd00643403 cd00643, HMG-CoA_reductase_classI, Class I hydroxy 0.0
pfam00368370 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coen 0.0
TIGR00920889 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-co 0.0
TIGR00533402 TIGR00533, HMG_CoA_R_NADP, 3-hydroxy-3-methylgluta 1e-171
COG1257436 COG1257, HMG1, Hydroxymethylglutaryl-CoA reductase 1e-154
cd00365376 cd00365, HMG-CoA_reductase, Hydroxymethylglutaryl- 6e-83
TIGR00532393 TIGR00532, HMG_CoA_R_NAD, hydroxymethylglutaryl-Co 2e-16
cd00644417 cd00644, HMG-CoA_reductase_classII, Class II hydro 3e-10
cd00644417 cd00644, HMG-CoA_reductase_classII, Class II hydro 7e-05
>gnl|CDD|153081 cd00643, HMG-CoA_reductase_classI, Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR) Back     alignment and domain information 
 Score =  669 bits (1729), Expect = 0.0
 Identities = 251/408 (61%), Positives = 307/408 (75%), Gaps = 9/408 (2%)

Query: 170 EEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLHGLPLEGFDYGSILGQC 229
           EE+I  +  G    Y LE  L D  RA  IRR  L++STGKSL  LP   +DY  +LG+ 
Sbjct: 1   EEIIDLLSAGHIKLYKLEKSLEDAERAVRIRRLYLEKSTGKSLEHLPYTTYDYSEVLGRN 60

Query: 230 CEMPVGYVQIPVGIAGPLLLDG----REYSVPMATTEGCLVASANRGCKAIHLSGGATSV 285
            E  +GYVQ+PVG+AGPLL++G     E+ VPMATTEG LVAS NRGCKAI+LSGGAT+ 
Sbjct: 61  IENVIGYVQVPVGVAGPLLINGEYAGGEFYVPMATTEGALVASTNRGCKAINLSGGATTR 120

Query: 286 LLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKN 345
           +L DGMTRAPV RF SA+ AAE K ++E   NF+ +  V   +SR ARLQ+IK  IAG++
Sbjct: 121 VLGDGMTRAPVFRFPSAREAAEFKAWIEE--NFEAIKEVAESTSRHARLQSIKPYIAGRS 178

Query: 346 LYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGR 405
           +YLRF  +TGDAMGMNMV+K  +   D+++  FPDM+VI +SGNFC+DKKP+A+NWIEGR
Sbjct: 179 VYLRFEYTTGDAMGMNMVTKATEAACDWIEENFPDMEVISLSGNFCTDKKPSAINWIEGR 238

Query: 406 GKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYI 465
           GKSVV EA I  +VV++VLKT  +ALVE+N+ KNL GSAMAG  GGFNAHA+NIV A++I
Sbjct: 239 GKSVVAEATIPREVVKEVLKTTPEALVEVNIAKNLIGSAMAG-SGGFNAHAANIVAAIFI 297

Query: 466 ATGQDPAQNVESSHCITMMEAINDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGV 525
           ATGQD AQ VESS+CIT ME   DG DL++SVTMPS+EVGTVGGGT L +Q  CL LLG 
Sbjct: 298 ATGQDAAQVVESSNCITTMELTADG-DLYISVTMPSLEVGTVGGGTGLPTQRECLELLGC 356

Query: 526 KGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNR 573
            GA  E PGAN+R LA IVA +VLAGELSL++ALAAG LV+SH K  R
Sbjct: 357 YGAGDE-PGANARKLAEIVAATVLAGELSLLAALAAGHLVRSHEKLGR 403

Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR), class I enzyme, homotetramer. Catalyzes the synthesis of coenzyme A and mevalonate in isoprenoid synthesis. In mammals this is the rate limiting committed step in cholesterol biosynthesis. Class I enzymes are found predominantly in eukaryotes and contain N-terminal membrane regions. With the exception of Archaeoglobus fulgidus, most archeae are assigned to class I, based on sequence similarity of the active site, even though they lack membrane regions. Yeast and human HMGR are divergent in their N-terminal regions, but are conserved in their active site. In contrast, human and bacterial HMGR differ in their active site architecture. Length = 403
>gnl|CDD|201184 pfam00368, HMG-CoA_red, Hydroxymethylglutaryl-coenzyme A reductase Back     alignment and domain information
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information
>gnl|CDD|129624 TIGR00533, HMG_CoA_R_NADP, 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP) Back     alignment and domain information
>gnl|CDD|224177 COG1257, HMG1, Hydroxymethylglutaryl-CoA reductase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|153080 cd00365, HMG-CoA_reductase, Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR) Back     alignment and domain information
>gnl|CDD|129623 TIGR00532, HMG_CoA_R_NAD, hydroxymethylglutaryl-CoA reductase, degradative Back     alignment and domain information
>gnl|CDD|153082 cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR) Back     alignment and domain information
>gnl|CDD|153082 cd00644, HMG-CoA_reductase_classII, Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 583
KOG2480602 consensus 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) 100.0
cd00643403 HMG-CoA_reductase_classI Class I hydroxymethylglut 100.0
TIGR00920886 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red 100.0
TIGR00533402 HMG_CoA_R_NADP 3-hydroxy-3-methylglutaryl Coenzyme 100.0
PF00368373 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A redu 100.0
COG1257436 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid me 100.0
TIGR00532393 HMG_CoA_R_NAD hydroxymethylglutaryl-CoA reductase, 100.0
cd00644417 HMG-CoA_reductase_classII Class II hydroxymethylgl 100.0
cd00365376 HMG-CoA_reductase Hydroxymethylglutaryl-coenzyme A 100.0
COG1257436 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid me 98.81
>KOG2480 consensus 3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) reductase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-171  Score=1349.29  Aligned_cols=538  Identities=61%  Similarity=0.934  Sum_probs=494.4

Q ss_pred             hcccCCCchHHHHhHHHHHHHHHHHHHHHHHHH--hhhhcCCCccccchHHHHHHHHH-HHHHHHHHhhcCcccccccc-
Q 007956           23 ETHAQLPLPLYIINALFFTLFFTVVYYLLSRWR--EKIRNSTPLHVVTLSEMVAIVAF-VASCIYLLGFFGIDFVQSIL-   98 (583)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-   98 (583)
                      ++++.+|||+|+++..|+.|||+++||++++|+  +|+|.|+|||++++++..+.... +++++|+++|++|+++++++ 
T Consensus        44 ~~~~~~~l~~~~~i~~~~~l~~~~~~~~~~~~~~~~k~~~s~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~s  123 (602)
T KOG2480|consen   44 KASKYLPLSLYLTIESPVLLLLSVVYIGFENWRLADKIRISTPLHVVDLSELAAHIGESIAENIDLLNFAKIDLIKSVIS  123 (602)
T ss_pred             hhhhhcccchHHhhhhHHHHHHHHHHHHHhhhhhhhhhhccCceeEEEccchhcceehhhhhhhhhhccccccchhhccc
Confidence            789999999999999999999999999999999  99999999999999999998888 99999999999999999988 


Q ss_pred             CCCCCccccccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCcCCCCCHHHHHHHhhc
Q 007956           99 RPSADVWASEDLEEEDSHVIIKDDSRNLPCGQALDCSHVMTLPQPQPQPQPLPSLIIDHDPNTLTFTTEEDEEMIKSVVD  178 (583)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~v~~  178 (583)
                      ....+.|..+       ..+...+.+...     -|.++.    |..+-..++-+    .|......+.+|+||+++|..
T Consensus       124 ~~~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~----pi~~l~~~~~~----~~~g~~~~~~~d~Eiv~lv~~  183 (602)
T KOG2480|consen  124 DDDVESWVTD-------RTILCVSGRLVT-----FPSIPK----PIRPLLEILNL----FPSGQEVKSLSDEEIVQLVIA  183 (602)
T ss_pred             cccccccccc-------cccccCCCcccc-----cCCCCC----Cccchhhhccc----CccccccccCChHHHHHHhhc
Confidence            5555567543       112222222211     011110    01111111001    112222346799999999999


Q ss_pred             CCCCCCCcchhcccHHHHHHHHHHHHHHHhCCCCC---CCCCCCCCcccccccccccceEEeeeceeeecCeEEcCeEEe
Q 007956          179 GTTPSYSLESKLGDCRRAAAIRREALQRSTGKSLH---GLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYS  255 (583)
Q Consensus       179 g~~~~~~lE~~l~d~~ra~~iRR~~l~~~tg~sl~---~L~~~~~D~~~i~g~~iEN~IG~v~IPvGVAGPL~InG~ey~  255 (583)
                      |++|+|+||++|+|++||+.|||++|++.++.+.+   +||+++|||+++.|+||||+|||+||||||||||+|||++||
T Consensus       184 G~~p~y~lEs~l~d~~Rav~iRR~~l~~~~~~~~~~~~~lP~~~yDY~~Vl~aCCENvIGY~piPVGVaGPLlldG~~y~  263 (602)
T KOG2480|consen  184 GKIPLYALESKLGDAERAVSIRRTALSRNAREPTGTSDKLPYEGYDYSRVLGACCENVIGYMPIPVGVAGPLLLDGTEYY  263 (602)
T ss_pred             CcccceeccccccchhhhHHHHHHHHHHhhcCcccccccCCccCcCHHHHHHHhhhccccceecccccccceEECCeEEE
Confidence            99999999999999999999999999999998877   999999999999999999999999999999999999999999


Q ss_pred             eeccccchhHHHHhhhHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchhhhhhhcCCcccee
Q 007956          256 VPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQ  335 (583)
Q Consensus       256 VPMATtEgsLVAS~nRGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~~van~tsR~g~L~  335 (583)
                      |||||||||||||+|||||+|+.+||+++++.+|||||+||++|+++.+|.++|.||++|+||+.++++||++|||+|||
T Consensus       264 VPMATTEGaLVAStnRGcKaI~a~GGa~sv~~~dGMTRgPvVRFps~~rA~~~k~WLe~~E~~~~lk~~FnstSRFaRLq  343 (602)
T KOG2480|consen  264 VPMATTEGALVASTNRGCKAINAGGGATSVLEKDGMTRGPVVRFPSARRAAEAKIWLESPENQEVLKKAFNSTSRFARLQ  343 (602)
T ss_pred             eeeccccchhhHhhccchhheecCCCeeEEEeecCccccceeecchHHHHHHHHHHhcChhhHHHHHHHhcccchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCcccceeccccCCccEEEeeeec
Q 007956          336 AIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAII  415 (583)
Q Consensus       336 ~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDKK~sA~n~I~gRGksVvaea~i  415 (583)
                      +|++.++|+++|+||...||||||||||+|++|.++.+|.++||+|++++||||||+||||+|+|||+||||+|+||++|
T Consensus       344 ~i~~~iaG~~lyiRF~~~TGDAMGMNMISKgve~~l~~l~~~fpdM~vi~iSGNyCtDKKpAAiNWieGRGKsVV~Ea~I  423 (602)
T KOG2480|consen  344 SIHTTIAGRNLYIRFCTSTGDAMGMNMISKGVENALRFLSEEFPDMQVISISGNYCTDKKPAAINWIEGRGKSVVAEATI  423 (602)
T ss_pred             eeeEEeecceeEEEEEeccccchhhhhHHHHHHHHHHHHHHhCCCceEEEeccCcccCCchHhhhhhccCCceEEEEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHccCHHHHHhhhhhhhhhHhhhhhccccCCCCcchhHHHHHHHhCCCcccccccccceeeeEEecCCCcEEE
Q 007956          416 KGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAINDGKDLHV  495 (583)
Q Consensus       416 ~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~A~~VESS~~iT~~e~~~~g~dL~~  495 (583)
                      |.++|+++|||++++|+|+|..||++|||||||+||||+|++|+|+|||||||||+||+||||||+|.||... ++|||+
T Consensus       424 p~~vvr~VLkt~v~aLveln~~KnliGSAmAGSvGGfNAHAANiVtAvFlAtGQDpAQnVeSSnCiT~Me~~~-d~DL~i  502 (602)
T KOG2480|consen  424 PGEVVRKVLKTTVEALVELNILKNLIGSAMAGSVGGFNAHAANIVTAVFLATGQDPAQNVESSNCITLMEAST-DGDLYI  502 (602)
T ss_pred             cHHHHHHHHccCHHHHHHHHhhhhhhhhhhhccccCcchhHHHHHHHHHHHhCCChHHhcccchhhhhheecc-CCCeEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999864 469999


Q ss_pred             EEEcCCceeEeecCcccchhHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHhccchHHHHHHhhccCC
Q 007956          496 SVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNRSS  575 (583)
Q Consensus       496 SvtLPsL~VGTVGGGT~L~~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~ALaa~gi~kgHMkL~R~~  575 (583)
                      |||||||+||||||||.|+||++||++|||+|++++.||.|||+||+||||+|||||||||+|||+|||+|+||+|||++
T Consensus       503 SvtMPsIEVGTVGGGT~L~pQ~AcL~lLGv~G~~~~~PG~NarqLAriVaaaVlAGELSLmaALAag~LVkSHM~~NRs~  582 (602)
T KOG2480|consen  503 SVTMPSIEVGTVGGGTVLEPQGACLDLLGVRGAHKTSPGDNARQLARIVAAAVLAGELSLMAALAAGHLVKSHMKLNRSS  582 (602)
T ss_pred             EEecccEEEEeecCccccCcHHHHHHHhcCCCCCCCCCCccHHHHHHHHHHHHHHhHHHHHHHHhcchHHHHHHhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccccc
Q 007956          576 KDVTKA  581 (583)
Q Consensus       576 ~~~~~~  581 (583)
                      .++...
T Consensus       583 ~~~~~~  588 (602)
T KOG2480|consen  583 IAIGSL  588 (602)
T ss_pred             cCCCCC
Confidence            887643

>cd00643 HMG-CoA_reductase_classI Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR) Back     alignment and domain information
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase Back     alignment and domain information
>TIGR00533 HMG_CoA_R_NADP 3-hydroxy-3-methylglutaryl Coenzyme A reductase, hydroxymethylglutaryl-CoA reductase (NADP) Back     alignment and domain information
>PF00368 HMG-CoA_red: Hydroxymethylglutaryl-coenzyme A reductase; InterPro: IPR002202 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A reductase, HMG-CoA reductase Back     alignment and domain information
>COG1257 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid metabolism] Back     alignment and domain information
>TIGR00532 HMG_CoA_R_NAD hydroxymethylglutaryl-CoA reductase, degradative Back     alignment and domain information
>cd00644 HMG-CoA_reductase_classII Class II hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR) Back     alignment and domain information
>cd00365 HMG-CoA_reductase Hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR) Back     alignment and domain information
>COG1257 HMG1 Hydroxymethylglutaryl-CoA reductase [Lipid metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
1dq8_A467 Complex Of The Catalytic Portion Of Human Hmg-Coa R 1e-139
2q1l_A441 Design And Synthesis Of Pyrrole-Based, Hepatoselect 1e-139
3qae_A458 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase Of 3e-05
>pdb|1DQ8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa Reductase With Hmg And Coa Length = 467 Back     alignment and structure 
Iteration: 1

 Score =  492 bits (1266), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/409 (58%), Positives = 307/409 (75%), Gaps = 3/409 (0%)
Query: 169 DEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQR--STGKSLHGLPLEGFDYGSIL 226
           D E+I+ V     P+Y LE+ +    R  +IRR+ L +  S   SL  LP   ++Y  ++
Sbjct: 43  DAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVM 102
Query: 227 GQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVL 286
           G CCE  +GY+ IPVG+AGPL LD +E+ VPMATTEGCLVAS NRGC+AI L GGA+S +
Sbjct: 103 GACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRV 162
Query: 287 LKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMVFNKSSRFARLQAIKCAIAGKNL 346
           L DGMTR PVVR   A  +AE+K +LE    F  +   F+ +SRFARLQ +  +IAG+NL
Sbjct: 163 LADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNL 222
Query: 347 YLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEGRG 406
           Y+RF   +GDAMGMNM+SKG +  L  L   FP+M ++ +SGN+C+DKKPAA+NWIEGRG
Sbjct: 223 YIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRG 282
Query: 407 KSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIA 466
           KSVVCEA+I   VVR+VLKT  +A++E+N+ KNL GSAMAG++GG+NAHA+NIVTA+YIA
Sbjct: 283 KSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIA 342
Query: 467 TGQDPAQNVESSHCITMMEAIN-DGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGV 525
            GQD AQNV SS+CIT+MEA     +DL++S TMPSIE+GTVGGGT L  Q ACL +LGV
Sbjct: 343 CGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGV 402
Query: 526 KGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYNRS 574
           +GA K++PG N+R LA IV G+V+AGELSLM+ALAAG LVKSHM +NRS
Sbjct: 403 QGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLVKSHMIHNRS 451
>pdb|2Q1L|A Chain A, Design And Synthesis Of Pyrrole-Based, Hepatoselective Hmg-Coa Reductase Inhibitors Length = 441 Back     alignment and structure
>pdb|3QAE|A Chain A, 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase Of Streptococcus Pneumoniae Length = 458 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
2r4f_A441 3-hydroxy-3-methylglutaryl-coenzyme A reductase; o 0.0
3qae_A458 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4 1e-125
1r31_A428 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4 1e-111
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... Length = 441 Back     alignment and structure
 Score =  533 bits (1375), Expect = 0.0
 Identities = 241/439 (54%), Positives = 313/439 (71%), Gaps = 3/439 (0%)

Query: 142 QPQPQPQPLPSLIIDHDPNTLTFTTEEDEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRR 201
               +P+P    +              D E+I+ V     P+Y LE+ +    R  +IRR
Sbjct: 3   HHHHEPRPNEECLQILGNAEKGAKFLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRR 62

Query: 202 EALQRSTGK--SLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIAGPLLLDGREYSVPMA 259
           + L +   +  SL  LP   ++Y  ++G CCE  +GY+ IPVG+AGPL LD +E+ VPMA
Sbjct: 63  QLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMA 122

Query: 260 TTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFD 319
           TTEGCLVAS NRGC+AI L GGA+S +L DGMTR PVVR   A  +AE+K +LE    F 
Sbjct: 123 TTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFA 182

Query: 320 PLSMVFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFP 379
            +   F+ +SRFARLQ +  +IAG+NLY+RF   +GDAMGMNM+SKG +  L  L   FP
Sbjct: 183 VIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFP 242

Query: 380 DMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKN 439
           +M ++ +SGN+C+DKKPAA+NWIEGRGKSVVCEA+I   VVR+VLKT  +A++E+N+ KN
Sbjct: 243 EMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKN 302

Query: 440 LTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAIN-DGKDLHVSVT 498
           L GSAMAG++GG+NAHA+NIVTA+YIA GQD AQNV SS+CIT+MEA     +DL++S T
Sbjct: 303 LVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCT 362

Query: 499 MPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSA 558
           MPSIE+GTVGGGT L  Q ACL +LGV+GA K++PG N+R LA IV G+V+AGELSLM+A
Sbjct: 363 MPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAA 422

Query: 559 LAAGQLVKSHMKYNRSSKD 577
           LAAG LVKSHM +NRS  +
Sbjct: 423 LAAGHLVKSHMIHNRSKIN 441
>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: CIT; 2.30A {Streptococcus pneumoniae} PDB: 3qau_A Length = 458 Back     alignment and structure
>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB: 1qay_A* 1qax_A* 1r7i_A 1t02_A* Length = 428 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query583
2r4f_A441 3-hydroxy-3-methylglutaryl-coenzyme A reductase; o 100.0
1r31_A428 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4 100.0
3qae_A458 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4 100.0
>2r4f_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; oxidoreductase, cholesterol, biocynthesis, HMG-COA, NADPH, statin, alternative splicing; HET: RIE; 1.70A {Homo sapiens} PDB: 2q1l_A* 2q6c_A* 2q6b_A* 3bgl_A* 3cct_A* 3ccw_A* 3ccz_A* 3cd0_A* 3cd5_A* 3cd7_A* 3cda_A* 3cdb_A* 1dqa_A* 1dq9_A* 1dq8_A* 1hw8_A* 1hw9_A* 1hwi_A* 1hwj_A* 1hwk_A* ... Back     alignment and structure
Probab=100.00  E-value=1.5e-142  Score=1129.92  Aligned_cols=411  Identities=58%  Similarity=0.958  Sum_probs=390.3

Q ss_pred             CCCHHHHHHHhhcCCCCCCCcchhcccHHHHHHHHHHHHHHH--hCCCCCCCCCCCCCcccccccccccceEEeeeceee
Q 007956          166 TEEDEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRS--TGKSLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGI  243 (583)
Q Consensus       166 ~~~~~ei~~~v~~g~~~~~~lE~~l~d~~ra~~iRR~~l~~~--tg~sl~~L~~~~~D~~~i~g~~iEN~IG~v~IPvGV  243 (583)
                      ..+|+||++++.+|++|+|+||+.++|++||+.+||++|++.  ++.++++|+.+++||++++++||||+|||+|||+||
T Consensus        27 ~~~~~e~~~~~~~~~~~~~~le~~~~~~~~a~~~Rr~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~iEN~IG~~~lPvGv  106 (441)
T 2r4f_A           27 FLSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGV  106 (441)
T ss_dssp             SSCHHHHHHHHHTTSSCGGGHHHHSSSHHHHHHHHHHHHHHHSSSTTGGGGSCCTTCCGGGTBTTTBSSEEEEEEEEEEE
T ss_pred             cCCHHHHHHHhhcCCCCCccchhhccChHHHHHHHHHHHHhhhCCChhHHhccccCCChHHHhccccccceeeeecceee
Confidence            458999999999999999999999999999999999999999  778899999999999999999999999999999999


Q ss_pred             ecCeEEcCeEEeeeccccchhHHHHhhhHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchhh
Q 007956          244 AGPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSM  323 (583)
Q Consensus       244 AGPL~InG~ey~VPMATtEgsLVAS~nRGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~~  323 (583)
                      ||||+|||++|+|||||||||||||+|||||+|+.+|||++++++|+|||+|||.|+++.+|.+++.|+++|+||++|++
T Consensus       107 Agpl~InG~~y~VPMATeE~slVAS~srGaK~i~~~GG~~t~v~~~~MtR~pv~~f~~~~~a~~~~~~i~~~~~~~~l~~  186 (441)
T 2r4f_A          107 AGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKE  186 (441)
T ss_dssp             EEEEEETTEEEEEEEECCCTTHHHHHHHHHHHHHHTTCBEEEEEEEEEEECCEEECSSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             eccEEEcCeEEEeeccccchhHHHHHhHHHHHHHhCCCEEEEECCCcEEEEEEEEECcHhhHHHHHHHHhChhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998889999999


Q ss_pred             hhhhcCCccceeeEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCcccceecccc
Q 007956          324 VFNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIE  403 (583)
Q Consensus       324 van~tsR~g~L~~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDKK~sA~n~I~  403 (583)
                      +++++||||||++|++++.|++||+||.|+||||||||||||++|++++||+++||++.+++||||||+||||+|+|||+
T Consensus       187 ~~~stsr~g~l~~i~~~~~g~~l~lrf~~~TgDAMG~NMvn~~~E~v~~~l~~~~~~~~~~sIsgN~~tdkk~~A~n~i~  266 (441)
T 2r4f_A          187 AFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIE  266 (441)
T ss_dssp             HHHTTCSSCEECCCEEEEETTEEEEEEEEECTTBCCHHHHHHHHHHHHHHHHHHCTTCEEEESCCSCSCCSSCCHHHHHH
T ss_pred             HhhhcccccccceEEEEeeCCEEEEEEEEecchhhcchhHHHHHHHHHHHHHhhCCCCeEEEEecCCcccceeeEEeeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccEEEeeeechHHHHHHHHccCHHHHHhhhhhhhhhHhhhhhccccCCCCcchhHHHHHHHhCCCcccccccccceee
Q 007956          404 GRGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITM  483 (583)
Q Consensus       404 gRGksVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~A~~VESS~~iT~  483 (583)
                      ||||+|+||+++|++|++++++|++++++|+|..||++|||+||++||||||+||||+||||||||||||+||||+|+|.
T Consensus       267 gRGk~V~ae~~i~~~vv~~vl~ts~~a~vd~~~aknl~gsa~ag~~gt~Nkh~aNgI~Av~lATGqD~a~~vEss~~~t~  346 (441)
T 2r4f_A          267 GRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITL  346 (441)
T ss_dssp             CCEEEEEEEEEECHHHHHHTSSSCHHHHHHHHHHHHTHHHHHTTCSSEESSSHHHHHHHHHHHTTCCGGGHHHHTCEEEE
T ss_pred             CCceEEEEEEecHHHHHHHHHCcCHHHHHHHHHHhhhhHHHhhccCCcCCCChHHHhHHHhhhcCCcHHHHHhhccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEec-CCCcEEEEEEcCCceeEeecCcccchhHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHhccc
Q 007956          484 MEAIN-DGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAG  562 (583)
Q Consensus       484 ~e~~~-~g~dL~~SvtLPsL~VGTVGGGT~L~~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~ALaa~  562 (583)
                      ||.++ +++|||+|||||||+||||||||+||+|++||+||||+|+++++||.||++||+||||+|||||||||+||+++
T Consensus       347 le~~~~~~~dL~~svtlPsL~VGTVGGgT~lp~q~~~L~iLG~~g~~~~~pg~nA~~LA~IiAa~~LAgeLSal~ALat~  426 (441)
T 2r4f_A          347 MEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAG  426 (441)
T ss_dssp             EEEESTTSCEEEEEEEEEEECCCSBSGGGGSHHHHHHHHHTTCCSCCSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             eeeeccCCCeEEEEEECCCceEEeecCcCCCHHHHHHHHHhCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99876 55699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhccCCc
Q 007956          563 QLVKSHMKYNRSSK  576 (583)
Q Consensus       563 gi~kgHMkL~R~~~  576 (583)
                      |||||||||||++.
T Consensus       427 ~i~~~HmkL~R~~~  440 (441)
T 2r4f_A          427 HLVKSHMIHNRSKI  440 (441)
T ss_dssp             --------------
T ss_pred             cHHHHHHHhcCCCC
Confidence            99999999999763
>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A {Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB: 1qay_A* 1qax_A* 1r7i_A 1t02_A* Back     alignment and structure
>3qae_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron oxido-reductase, oxidoreductase; HET: CIT; 2.30A {Streptococcus pneumoniae} PDB: 3qau_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 583
d1dqaa4292 d.179.1.1 (A:462-586,A:704-870) Substrate-binding 9e-73
d1dqaa4292 d.179.1.1 (A:462-586,A:704-870) Substrate-binding 1e-54
d1dqaa1117 d.58.20.1 (A:587-703) NAD-binding domain of HMG-Co 1e-60
d1r31a2266 d.179.1.1 (A:3-110,A:221-378) Substrate-binding do 3e-46
d1r31a2266 d.179.1.1 (A:3-110,A:221-378) Substrate-binding do 7e-10
>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 292 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Substrate-binding domain of HMG-CoA reductase
superfamily: Substrate-binding domain of HMG-CoA reductase
family: Substrate-binding domain of HMG-CoA reductase
domain: Substrate-binding domain of HMG-CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  232 bits (594), Expect = 9e-73
 Identities = 112/169 (66%), Positives = 139/169 (82%), Gaps = 1/169 (0%)

Query: 405 RGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVY 464
             KSVVCEA+I   VVR+VLKT  +A++E+N+ KNL GSAMAG++GG+NAHA+NIVTA+Y
Sbjct: 124 ADKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIY 183

Query: 465 IATGQDPAQNVESSHCITMMEAIN-DGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLL 523
           IA GQD AQNV SS+CIT+MEA     +DL++S TMPSIE+GTVGGGT L  Q ACL +L
Sbjct: 184 IACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQML 243

Query: 524 GVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQLVKSHMKYN 572
           GV+GA K++PG N+R LA IV G+V+AGELSLM+ALAAG LVKSHM +N
Sbjct: 244 GVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHLVKSHMIHN 292
>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 292 Back     information, alignment and structure
>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]} Length = 266 Back     information, alignment and structure
>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]} Length = 266 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query583
d1dqaa4292 Substrate-binding domain of HMG-CoA reductase {Hum 100.0
d1r31a2266 Substrate-binding domain of HMG-CoA reductase {Pse 100.0
d1dqaa1117 NAD-binding domain of HMG-CoA reductase {Human (Ho 100.0
d1r31a1110 NAD-binding domain of HMG-CoA reductase {Pseudomon 99.73
d1r31a2266 Substrate-binding domain of HMG-CoA reductase {Pse 97.44
>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Substrate-binding domain of HMG-CoA reductase
superfamily: Substrate-binding domain of HMG-CoA reductase
family: Substrate-binding domain of HMG-CoA reductase
domain: Substrate-binding domain of HMG-CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-100  Score=769.75  Aligned_cols=289  Identities=60%  Similarity=0.964  Sum_probs=278.2

Q ss_pred             CCHHHHHHHhhcCCCCCCCcchhcccHHHHHHHHHHHHHHHhCC--CCCCCCCCCCCcccccccccccceEEeeeceeee
Q 007956          167 EEDEEMIKSVVDGTTPSYSLESKLGDCRRAAAIRREALQRSTGK--SLHGLPLEGFDYGSILGQCCEMPVGYVQIPVGIA  244 (583)
Q Consensus       167 ~~~~ei~~~v~~g~~~~~~lE~~l~d~~ra~~iRR~~l~~~tg~--sl~~L~~~~~D~~~i~g~~iEN~IG~v~IPvGVA  244 (583)
                      .+||||+++|.+|++|+|+||+.|+|++||+.+||+++++.++.  +|++||+++|||+++.++||||+|||+|||+|||
T Consensus         1 ~~d~e~~~~v~~g~i~~y~lE~~l~~~~~av~iRR~~~~~~~~~~~~l~~lp~~~~dy~~v~~~~~EN~IG~~~lPlGvA   80 (292)
T d1dqaa4           1 LSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVA   80 (292)
T ss_dssp             CCHHHHHHHHHHTTCCGGGHHHHSSSHHHHHHHHHHHHHTTCSSTTGGGGSCCTTCCHHHHTTTTCSSEEEEEEEEEEEE
T ss_pred             CCHHHHHHHHHcCCCchHHHHHhcCChHHHHHHHHHHHHHhhCCccchhhCCCCCcCHHHHhccCccceeeeEeccceee
Confidence            37999999999999999999999999999999999999999885  7999999999999999999999999999999999


Q ss_pred             cCeEEcCeEEeeeccccchhHHHHhhhHHHHHhhCCCeEEEEcCCceEEceEEEeCCHHHHHHHHHHhcCCCCCcchhhh
Q 007956          245 GPLLLDGREYSVPMATTEGCLVASANRGCKAIHLSGGATSVLLKDGMTRAPVVRFGSAKRAAELKLFLENPVNFDPLSMV  324 (583)
Q Consensus       245 GPL~InG~ey~VPMATtEgsLVAS~nRGaKai~~sGG~~t~v~~d~MtRapV~~f~~~~~A~~~~~wl~~p~n~~~L~~v  324 (583)
                      |||+|||++|+|||||||||||||+|||||+++.+||++++++.|                                   
T Consensus        81 gpl~InG~~y~VPMATeEgslVAS~nrGaK~i~~~GG~~~~v~~d-----------------------------------  125 (292)
T d1dqaa4          81 GPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLAD-----------------------------------  125 (292)
T ss_dssp             EEEEETTEEEEEEEECSCTTHHHHHHHHHHHHHHTTCBEEEEEEE-----------------------------------
T ss_pred             ccEEECCeEEEEeeeechhHHHHHhhHHHHHHHhcCCCEEEEehh-----------------------------------
Confidence            999999999999999999999999999999999999999876533                                   


Q ss_pred             hhhcCCccceeeEEEEeeCCeEEEEEEeeccccccchhHHHHHHHHHHHHHhhCCCCcEEEeecCCccCcccceeccccC
Q 007956          325 FNKSSRFARLQAIKCAIAGKNLYLRFTCSTGDAMGMNMVSKGVQNVLDFLQAEFPDMDVIGISGNFCSDKKPAAVNWIEG  404 (583)
Q Consensus       325 an~tsR~g~L~~I~~~i~G~~l~lrf~~~TgDAMG~NMVn~~~e~v~~~l~~~~~~~~~i~IsgN~ctDKK~sA~n~I~g  404 (583)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (292)
T d1dqaa4         126 --------------------------------------------------------------------------------  125 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccEEEeeeechHHHHHHHHccCHHHHHhhhhhhhhhHhhhhhccccCCCCcchhHHHHHHHhCCCcccccccccceeee
Q 007956          405 RGKSVVCEAIIKGDVVRKVLKTNVDALVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMM  484 (583)
Q Consensus       405 RGksVvaea~i~~eVv~kiLkts~~al~eln~~knltGsa~aGs~gG~NkhiaNgIaAvfIATGQD~A~~VESS~~iT~~  484 (583)
                        |.+++|+++++++++++|+++++++++++..+|++||+++|+++|||||+||||+|||||||||||+++|||||+|.+
T Consensus       126 --~~~~a~~~~~~~vv~~~Lk~~~e~l~~~~~~~nl~gsa~ag~~~g~N~~i~NgI~Av~lATGqD~a~v~~ss~a~t~~  203 (292)
T d1dqaa4         126 --KSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLM  203 (292)
T ss_dssp             --EEEEEEEEECHHHHHHTTSSCHHHHHHHHHHHHTHHHHHTTCSSEESSSHHHHHHHHHHHTTCCGGGHHHHTCEEEEE
T ss_pred             --hhhhhhccCcHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhcccccchhHhhHHHHHHhhccchHHHHHHhhcceEEE
Confidence              346789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEec-CCCcEEEEEEcCCceeEeecCcccchhHHHHHHHcCCCCCCCCCCCccHHHHHHHHHHHHHhhHHHHHHHhccch
Q 007956          485 EAIN-DGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGANSRLLATIVAGSVLAGELSLMSALAAGQ  563 (583)
Q Consensus       485 e~~~-~g~dL~~SvtLPsL~VGTVGGGT~L~~q~~~L~lLGv~Ga~~~~pG~nAr~LAeIIAA~vLAgeLSll~ALaa~g  563 (583)
                      +.+. +++|||+|+|||||+||||||||+||+|++||+||||+|++++.||.||++||+||||+|||||||+|+||+++|
T Consensus       204 ~~~~~~~~~L~~s~tlPsl~VGtVGGgT~l~~q~~~L~iLgv~g~~~~~p~~nA~~LA~Iiaa~~LA~els~l~ALat~~  283 (292)
T d1dqaa4         204 EASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGH  283 (292)
T ss_dssp             EEETTTTCEEEEEEEEEEECCCSBSGGGGSHHHHHHHHHHTCCSCCSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEcCCCCEEEEEEecceeeeeccCcccCchHHHHHHHhCCCCcCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            9774 567999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhc
Q 007956          564 LVKSHMKYN  572 (583)
Q Consensus       564 i~kgHMkL~  572 (583)
                      |||||||||
T Consensus       284 i~~~HMk~n  292 (292)
T d1dqaa4         284 LVKSHMIHN  292 (292)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHhhccC
Confidence            999999986
>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]} Back     information, alignment and structure
>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r31a1 d.58.20.1 (A:111-220) NAD-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]} Back     information, alignment and structure
>d1r31a2 d.179.1.1 (A:3-110,A:221-378) Substrate-binding domain of HMG-CoA reductase {Pseudomonas mevalonii [TaxId: 32044]} Back     information, alignment and structure