Citrus Sinensis ID: 007960

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580---
MAPSKFKKAIGAVKDKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLEFRMQGRRGKRSMFGIDEDEEEASSAPACARATPVRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLELMDDFIRDKSALAQSKKNVDFQLTNEPEQEQDDNDKDAETTNQEDMNETKALPAPEESTPAEEEKKEENVKQETKDTEKEADLLNLGEDSATCDEQADKLALALFDSGNAPVDQAGAGRTAWEAFKDETADWETALVQSASNLNHQTAALGGGFDMLLLDGMYQQGATAVAMASAEASGSASSVALGSAGRPAMLALPAPPTTQAGATLPTDPFAASCAVAPPPFVQMSDLEKKQKLLVEEQLMWQQYARDGMQGQLGITKLQPNTYNMGGYTHGY
cccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccHHHccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
cccHHHHHHHHHcccccEEEEEEEcccccHHHHcEEEEEcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccEEEEEcccccccccccccccHHHHccccccccEEEEEEcccccHHHHHHHcccccHHHHHccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccc
MAPSKFKKAIgavkdktsiglakvgssnslsDLEVAIVKAtrheeypaeeKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLlsegdpayeqEIFFStrrgtrllnmsdfrdtsrsnswdySAFVRTYALYLDERLEFrmqgrrgkrsmfgidedeeeassapacaratpvrdMKIEHLFSRIQHLQQVLERFLacrptgsaknnRVVIVALYPVVKESFQIYYDITEILGILIDRfmelevpdsvkvYDIFCRVSKQYDELDSFYGWCKTVgiarsseypeveriTYKKLELMDDFIRDKSALAqskknvdfqltnepeqeqddndkdaettnqedmnetkalpapeestpaeeekkeeNVKQETKDTEKEADLLnlgedsatcDEQADKLALALFdsgnapvdqagagrtawEAFKDETADWETALVQSASNLNHQTAALGGGFDMLLLDGMYQQGATAVAMASAEAsgsassvalgsagrpamlalpappttqagatlptdpfaascavapppfvqmsdlEKKQKLLVEEQLMWQQYARDGmqgqlgitklqpntynmggythgy
mapskfkkaigavkdktsiglakvgssnslsdLEVAIVKATrheeypaeekhIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIffstrrgtrllnmsdfrdtsrsnswdysaFVRTYALYLDERLEFRMQGRRGKRSmfgidedeeeassapacaratPVRDMKIEHLFSRIQHLQQVLERFLACrptgsaknnrVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTvgiarsseypeveRITYKKLELMDDFIRDKSALAqskknvdfqltnepeqeqddndkDAETTnqedmnetkalpapeestpaeeekkeenvkqetkdtekeadllNLGEDSATCDEQADKLALALFDSGNAPVDQAGAGRTAWEAFKDETADWETALVQSASNLNHQTAALGGGFDMLLLDGMYQQGATAVAMASAEASGSASSVALGSAGRPAMLALPAPPTTQAGATLPTDPFAASCAVAPPPFVQMSDLEKKQKLLVEEQLMWQQYARDGMQGQLgitklqpntynmggythgy
MAPSKFKKAIGAVKDKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLEFRMQGRRGKRSMFGIdedeeeassaPACARATPVRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLELMDDFIRDKSALAQSKKNVDFQLTNEPEQEQDDNDKDAETTNQEDMNETKalpapeestpaeeekkeenvkqeTKDTEKEADLLNLGEDSATCDEQADKLALALFDSGNAPVDQAGAGRTAWEAFKDETADWETALVQSASNLNHQTAAlgggfdmllldgmYQQgatavamasaeasgsassvalgsagRpamlalpappttqagatlptDPFAASCAVAPPPFVQMSDLEKKQKLLVEEQLMWQQYARDGMQGQLGITKLQPNTYNMGGYTHGY
*******************************DLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLEFR*******************************VRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLELMDDFIR********************************************************************************************LALALFDSGNAPVDQAGAGRTAWEAFKDETADWETALVQSASNLNHQTAALGGGFDMLLLDGMYQQGATAV**********************************************SCAVA***FV********QKLLVEEQLMWQQYARDGMQGQLGITKLQ*************
****KFK*AIGAVKDKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLEFRMQGRRG**************************RDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLELM***********************************************************************************************************************************************************************************************************************CAVA*******************************************************
**********GAVKDKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLEFRMQGRRGKRSMFGID***********CARATPVRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLELMDDFIRDKSALAQSKKNVDFQLTN******************************************************EADLLNLGEDSATCDEQADKLALALFDSGNAPVDQAGAGRTAWEAFKDETADWETALVQSASNLNHQTAALGGGFDMLLLDGMYQQGA******************LGSAGRPAMLALPAPPTTQAGATLPTDPFAASCAVAPPPFVQMSDLEKKQKLLVEEQLMWQQYARDGMQGQLGITKLQPNTYNMGGYTHGY
****KFKKAIGAVKDKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLEFRMQGRRGKRSMFG********************RDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLELMDDFIRDKS*********************************************************************EADLLNLGEDSATCDEQADKLALALFDSGNA********RT*W**FKDETADWETALVQSASNLNHQTAALGGGFDMLLLDGMYQQGATAVAMASAEASGSASSVALGSAGRPAMLALPAPPTTQAGATLPTDPFAASCAVAPPPFVQMSDLEKKQKLLVEEQLMWQQYARDGMQGQLGITKLQPNTYNMGGY**G*
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MAPSKFKKAIGAVKDKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLEFRMQGRRGKRSMFGIDEDEEEASSAPACARATPVRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLELMDDFIRDKSALAQSKKNVDFQLTNEPEQEQDDNDKDAETTNQEDMNETKALPAPEESTPAEEEKKEENVKQETKDTEKEADLLNLGEDSATCDEQADKLALALFDSGNAPVDQAGAGRTAWEAFKDETADWETALVQSASNLNHQTAALGGGFDMLLLDGMYQQGATAVAMASAEASGSASSVALGSAGRPAMLALPAPPTTQAGATLPTDPFAASCAVAPPPFVQMSDLEKKQKLLVEEQLMWQQYARDGMQGQLGITKLQPNTYNMGGYTHGY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query583 2.2.26 [Sep-21-2011]
Q9SA65599 Putative clathrin assembl yes no 0.982 0.956 0.633 0.0
Q8GX47611 Putative clathrin assembl no no 0.987 0.942 0.593 0.0
Q8S9J8635 Probable clathrin assembl no no 0.948 0.870 0.433 1e-134
Q8LF20653 Putative clathrin assembl no no 0.656 0.586 0.429 3e-81
Q9ZVN6653 Clathrin coat assembly pr no no 0.547 0.488 0.411 5e-75
Q8LBH2571 Putative clathrin assembl no no 0.816 0.833 0.341 2e-65
P94017 692 Putative clathrin assembl no no 0.775 0.653 0.327 1e-64
Q8VYT2601 Putative clathrin assembl no no 0.855 0.830 0.331 2e-63
Q9LVD8591 Putative clathrin assembl no no 0.516 0.509 0.396 3e-59
Q9LHS0544 Putative clathrin assembl no no 0.716 0.768 0.331 4e-59
>sp|Q9SA65|CAP4_ARATH Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1 Back     alignment and function desciption
 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/609 (63%), Positives = 464/609 (76%), Gaps = 36/609 (5%)

Query: 1   MAPSKFKKAIGAVKDKTSIGLAKV-GSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSL 59
           M  SKFK+AIGAVKD+TS+GLAKV G S SLS+L+VAIVKATRHEE+PAEEK+IREILSL
Sbjct: 1   MGSSKFKRAIGAVKDQTSVGLAKVNGRSASLSELDVAIVKATRHEEFPAEEKYIREILSL 60

Query: 60  TCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRL 119
           T YSR+YI+ACV+ +S+RLNKTK WTVALKTLILIQRLL EGD AYEQEIFF+TRRGTRL
Sbjct: 61  TSYSRSYINACVSTLSRRLNKTKCWTVALKTLILIQRLLGEGDQAYEQEIFFATRRGTRL 120

Query: 120 LNMSDFRDTSRSNSWDYSAFVRTYALYLDERLEFRMQGRRGKRSMF--GIDEDEEEASSA 177
           LNMSDFRD SRSNSWDYSAFVRTYALYLDERL+FRMQ R GKR ++  G + DEEE   A
Sbjct: 121 LNMSDFRDVSRSNSWDYSAFVRTYALYLDERLDFRMQARHGKRGVYCVGGEADEEEQDQA 180

Query: 178 PA------CARATPVRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVV 231
            A        R+ P+ +MK E +F RIQHLQQ+L+RFLACRPTG+A+NNRVVIVALYP+V
Sbjct: 181 AADLSTAIVVRSQPIAEMKTEQIFIRIQHLQQLLDRFLACRPTGNARNNRVVIVALYPIV 240

Query: 232 KESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIAR 291
           KESFQIYYD+TEI+GILI+RFMEL++PDS+KVYDIFCRVSKQ++ELD FY WCK +GIAR
Sbjct: 241 KESFQIYYDVTEIMGILIERFMELDIPDSIKVYDIFCRVSKQFEELDQFYSWCKNMGIAR 300

Query: 292 SSEYPEVERITYKKLELMDDFIRDKSALAQSKKNVDFQLTNEPEQEQDDNDKDAETTN-- 349
           SSEYPE+E+IT KKL+LMD+FIRDKSAL  +K++   +     E ++DD++   E  N  
Sbjct: 301 SSEYPEIEKITQKKLDLMDEFIRDKSALEHTKQSKSVK----SEADEDDDEARTEEVNEE 356

Query: 350 QEDMNETKALPAP----EESTPAEEEKKEENVKQETKDTEKEADLLNLGE-DSATCDEQA 404
           QEDMN  KALP P    E+    EEE KEE + +  K  E+  DLL+LG  +     +  
Sbjct: 357 QEDMNAIKALPEPPPKEEDDVKPEEEAKEEVIIE--KKQEEMGDLLDLGNTNGGEAGQAG 414

Query: 405 DKLALALFDSGNAPVDQAGAGRTAWEAFKDETADWETALVQSASNLNHQTAALGGGFDML 464
           D LALALFD G             WEAFKD++ADWETALVQ+A+NL+ Q + LGGGFDML
Sbjct: 415 DSLALALFD-GPYASGSGSESGPGWEAFKDDSADWETALVQTATNLSGQKSELGGGFDML 473

Query: 465 LLDGMYQQGATAVAMASAE---ASGSASSVALGSAGRPA--MLALPAPPTTQAGA----- 514
           LL+GMYQ GA   A+ ++    ASGSASS+A GSAGRPA  MLALPAP T    A     
Sbjct: 474 LLNGMYQHGAVNAAVKTSTAYGASGSASSMAFGSAGRPAATMLALPAPSTANGNAGNINS 533

Query: 515 TLPTDPFAASCAVAPPPFVQMSDLEKKQKLLVEEQLMWQQYARDGMQGQLGITKLQPNTY 574
            +P DPFAAS  VAPP +VQM+D+EKKQ++L+EEQ+MW QY+RDG QG + + + Q   Y
Sbjct: 534 PVPMDPFAASLEVAPPAYVQMNDMEKKQRMLMEEQMMWDQYSRDGRQGHMNLRQNQNQPY 593

Query: 575 NMGGYTHGY 583
           +   YT  Y
Sbjct: 594 S---YTPQY 599

Arabidopsis thaliana (taxid: 3702)
>sp|Q8GX47|CAP3_ARATH Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2 Back     alignment and function description
>sp|Q8S9J8|CAP1_ARATH Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=2 Back     alignment and function description
>sp|Q8LF20|CAP2_ARATH Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZVN6|AP180_ARATH Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana GN=AP180 PE=1 SV=1 Back     alignment and function description
>sp|Q8LBH2|CAP8_ARATH Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2 Back     alignment and function description
>sp|P94017|CAP9_ARATH Putative clathrin assembly protein At1g14910 OS=Arabidopsis thaliana GN=At1g14910 PE=2 SV=2 Back     alignment and function description
>sp|Q8VYT2|CAP6_ARATH Putative clathrin assembly protein At4g25940 OS=Arabidopsis thaliana GN=At4g25940 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVD8|CAP7_ARATH Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana GN=At5g57200 PE=3 SV=1 Back     alignment and function description
>sp|Q9LHS0|CAP10_ARATH Putative clathrin assembly protein At5g35200 OS=Arabidopsis thaliana GN=At5g35200 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query583
255565550578 clathrin assembly protein, putative [Ric 0.984 0.993 0.715 0.0
224069744581 predicted protein [Populus trichocarpa] 0.974 0.977 0.708 0.0
225447836582 PREDICTED: putative clathrin assembly pr 0.981 0.982 0.693 0.0
449438534592 PREDICTED: LOW QUALITY PROTEIN: putative 0.977 0.962 0.666 0.0
449479121591 PREDICTED: LOW QUALITY PROTEIN: putative 0.977 0.964 0.668 0.0
15218697599 putative clathrin assembly protein [Arab 0.982 0.956 0.633 0.0
356528765593 PREDICTED: putative clathrin assembly pr 0.982 0.966 0.658 0.0
356557537596 PREDICTED: putative clathrin assembly pr 0.994 0.973 0.657 0.0
356510707585 PREDICTED: putative clathrin assembly pr 0.965 0.962 0.646 0.0
297843104599 hypothetical protein ARALYDRAFT_470282 [ 0.989 0.963 0.629 0.0
>gi|255565550|ref|XP_002523765.1| clathrin assembly protein, putative [Ricinus communis] gi|223536977|gb|EEF38614.1| clathrin assembly protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  847 bits (2189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 420/587 (71%), Positives = 486/587 (82%), Gaps = 13/587 (2%)

Query: 1   MAPSKFKKAIGAVKDKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLT 60
           MAPSK ++A+GAVKD+TSIGLAKVGSSNSLSDL+VAIVKATRHEEYPAEE+H+REILSLT
Sbjct: 1   MAPSKIRRALGAVKDQTSIGLAKVGSSNSLSDLDVAIVKATRHEEYPAEERHVREILSLT 60

Query: 61  CYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLL 120
            YSRAYISACVN +S+RLNKT+NWTVALKTL+LIQRLL EGDPAYEQEIFF+TRRGTRLL
Sbjct: 61  SYSRAYISACVNTLSRRLNKTRNWTVALKTLVLIQRLLGEGDPAYEQEIFFATRRGTRLL 120

Query: 121 NMSDFRDTSRSNSWDYSAFVRTYALYLDERLEFRMQGRRGKRSMFGIDEDEEEASSAPAC 180
           NMSDF DTSRSNSWDYSAFVRTYALYLDERLE+RMQGRRG+RS FGIDEDEE  ++   C
Sbjct: 121 NMSDFCDTSRSNSWDYSAFVRTYALYLDERLEYRMQGRRGRRSAFGIDEDEE--ATGTIC 178

Query: 181 ARATPVRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYD 240
            R+TPVR+MK +H+FSRIQHLQQ+LERFLACRPTG AK+NRVVIVALYP+VKESFQ+YYD
Sbjct: 179 VRSTPVREMKTDHVFSRIQHLQQLLERFLACRPTGGAKHNRVVIVALYPIVKESFQLYYD 238

Query: 241 ITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVER 300
           ITEILGILIDRFMELE+ DSVKVYDIFCR+SKQ+++L+SFYGWCK +GI RSS+YP+VE+
Sbjct: 239 ITEILGILIDRFMELEISDSVKVYDIFCRISKQFEDLESFYGWCKIIGIGRSSDYPDVEK 298

Query: 301 ITYKKLELMDDFIRDKSALAQSKKNVDFQLTNEPEQEQDDNDKDAETTNQEDMNETKALP 360
           IT KKL+LMD+FIRDKSALAQ+K  + F+   E   E ++  K  E  N++DM + KALP
Sbjct: 299 ITPKKLDLMDEFIRDKSALAQTKHAITFE---EMIHETEEGSKQVE-ENEDDMTKIKALP 354

Query: 361 APEESTPAEEEKKEENVKQETKDTEKEADLLNLGEDSATCDEQADKLALALFDSGNAPVD 420
            PE     E  ++E     + ++   E DLLNLGE+  + +E   +LALALFD G  P  
Sbjct: 355 PPEGFPTEEIAEEEVKEGDKEENNTTEVDLLNLGEELVSTEEYGTQLALALFDGGAQP-- 412

Query: 421 QAGAGRTAWEAFKDETADWETALVQSASNLNHQTAALGGGFDMLLLDGMYQQGATAVAMA 480
                R  WEAF D++ DWET LVQSAS+L++Q A L GGFDM+LLDGMYQ+GAT  A +
Sbjct: 413 -GATTRPPWEAFNDDSKDWETTLVQSASHLSNQKATLAGGFDMMLLDGMYQRGATNAATS 471

Query: 481 S--AEASGSASSVALGSAGRPAMLALPAPPTTQAGAT-LPT-DPFAASCAVAPPPFVQMS 536
           +     SGSASSVAL S GRP MLALP PPT     T LP  DPFAAS  VAPPP+VQMS
Sbjct: 472 AIGYGGSGSASSVALESTGRPTMLALPPPPTQDGNNTVLPNADPFAASLVVAPPPYVQMS 531

Query: 537 DLEKKQKLLVEEQLMWQQYARDGMQGQLGITKLQPNTYNMGGYTHGY 583
           D+EKKQKLLVEEQLMWQQYARDGMQGQ+GITKLQPN+YNMGGYT GY
Sbjct: 532 DMEKKQKLLVEEQLMWQQYARDGMQGQVGITKLQPNSYNMGGYTSGY 578

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224069744|ref|XP_002326403.1| predicted protein [Populus trichocarpa] gi|222833596|gb|EEE72073.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225447836|ref|XP_002270803.1| PREDICTED: putative clathrin assembly protein At1g03050-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449438534|ref|XP_004137043.1| PREDICTED: LOW QUALITY PROTEIN: putative clathrin assembly protein At1g03050-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449479121|ref|XP_004155511.1| PREDICTED: LOW QUALITY PROTEIN: putative clathrin assembly protein At1g03050-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15218697|ref|NP_171804.1| putative clathrin assembly protein [Arabidopsis thaliana] gi|46396022|sp|Q9SA65.1|CAP4_ARATH RecName: Full=Putative clathrin assembly protein At1g03050 gi|4587573|gb|AAD25804.1|AC006550_12 Similar to clathrin assembly protein gb|AF041374 (CALM) from Rattus norvegicus [Arabidopsis thaliana] gi|91805731|gb|ABE65594.1| clathrin assembly protein-like [Arabidopsis thaliana] gi|332189399|gb|AEE27520.1| putative clathrin assembly protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356528765|ref|XP_003532968.1| PREDICTED: putative clathrin assembly protein At1g03050-like [Glycine max] Back     alignment and taxonomy information
>gi|356557537|ref|XP_003547072.1| PREDICTED: putative clathrin assembly protein At1g03050-like [Glycine max] Back     alignment and taxonomy information
>gi|356510707|ref|XP_003524077.1| PREDICTED: putative clathrin assembly protein At1g03050-like [Glycine max] Back     alignment and taxonomy information
>gi|297843104|ref|XP_002889433.1| hypothetical protein ARALYDRAFT_470282 [Arabidopsis lyrata subsp. lyrata] gi|297335275|gb|EFH65692.1| hypothetical protein ARALYDRAFT_470282 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query583
TAIR|locus:2007524599 AT1G03050 [Arabidopsis thalian 0.768 0.747 0.627 8.3e-164
TAIR|locus:2132382611 AT4G02650 [Arabidopsis thalian 0.989 0.944 0.509 6e-151
TAIR|locus:2040115653 AT2G25430 [Arabidopsis thalian 0.269 0.240 0.660 5.2e-125
TAIR|locus:505006543635 AT4G32285 [Arabidopsis thalian 0.272 0.250 0.627 7.4e-122
TAIR|locus:2205558653 AT1G05020 [Arabidopsis thalian 0.548 0.490 0.419 3.1e-67
TAIR|locus:2165615591 AT5G57200 [Arabidopsis thalian 0.740 0.730 0.339 5.4e-65
TAIR|locus:2120780601 AT4G25940 [Arabidopsis thalian 0.753 0.730 0.332 1.4e-64
TAIR|locus:2049587571 AT2G01600 [Arabidopsis thalian 0.723 0.739 0.341 4.2e-59
TAIR|locus:2182432544 AT5G35200 [Arabidopsis thalian 0.257 0.275 0.458 5.4e-55
TAIR|locus:2006727 692 AT1G14910 [Arabidopsis thalian 0.725 0.611 0.318 1.3e-54
TAIR|locus:2007524 AT1G03050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1425 (506.7 bits), Expect = 8.3e-164, Sum P(2) = 8.3e-164
 Identities = 293/467 (62%), Positives = 351/467 (75%)

Query:     1 MAPSKFKKAIGAVKDKTSIGLAKV-GSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSL 59
             M  SKFK+AIGAVKD+TS+GLAKV G S SLS+L+VAIVKATRHEE+PAEEK+IREILSL
Sbjct:     1 MGSSKFKRAIGAVKDQTSVGLAKVNGRSASLSELDVAIVKATRHEEFPAEEKYIREILSL 60

Query:    60 TCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRL 119
             T YSR+YI+ACV+ +S+RLNKTK WTVALKTLILIQRLL EGD AYEQEIFF+TRRGTRL
Sbjct:    61 TSYSRSYINACVSTLSRRLNKTKCWTVALKTLILIQRLLGEGDQAYEQEIFFATRRGTRL 120

Query:   120 LNMSDFRDTSRSNSWDYSAFVRTYALYLDERLEFRMQGRRGKRSMFGIXXXXXXXXXXPA 179
             LNMSDFRD SRSNSWDYSAFVRTYALYLDERL+FRMQ R GKR ++ +           A
Sbjct:   121 LNMSDFRDVSRSNSWDYSAFVRTYALYLDERLDFRMQARHGKRGVYCVGGEADEEEQDQA 180

Query:   180 CA--------RATPVRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVV 231
              A        R+ P+ +MK E +F RIQHLQQ+L+RFLACRPTG+A+NNRVVIVALYP+V
Sbjct:   181 AADLSTAIVVRSQPIAEMKTEQIFIRIQHLQQLLDRFLACRPTGNARNNRVVIVALYPIV 240

Query:   232 KESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIAR 291
             KESFQIYYD+TEI+GILI+RFMEL++PDS+KVYDIFCRVSKQ++ELD FY WCK +GIAR
Sbjct:   241 KESFQIYYDVTEIMGILIERFMELDIPDSIKVYDIFCRVSKQFEELDQFYSWCKNMGIAR 300

Query:   292 SSEYPEVERITYKKLELMDDFIRDKSALAQSKKNVDFQLTNEPEQEQDDNDKDAETTN-- 349
             SSEYPE+E+IT KKL+LMD+FIRDKSAL  +K++   +     E ++DD++   E  N  
Sbjct:   301 SSEYPEIEKITQKKLDLMDEFIRDKSALEHTKQSKSVK----SEADEDDDEARTEEVNEE 356

Query:   350 QEDMNETKXXXXX--XXXXXXXXXXXXXXXXXXTKDTEKEADLLNLGE-DSATCDEQADK 406
             QEDMN  K                          K  E+  DLL+LG  +     +  D 
Sbjct:   357 QEDMNAIKALPEPPPKEEDDVKPEEEAKEEVIIEKKQEEMGDLLDLGNTNGGEAGQAGDS 416

Query:   407 LALALFDSGNAPVDQAGAGRTAWEAFKDETADWETALVQSASNLNHQ 453
             LALALFD   A    + +G   WEAFKD++ADWETALVQ+A+NL+ Q
Sbjct:   417 LALALFDGPYASGSGSESG-PGWEAFKDDSADWETALVQTATNLSGQ 462
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005545 "1-phosphatidylinositol binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0030118 "clathrin coat" evidence=IEA
GO:0030276 "clathrin binding" evidence=IEA
GO:0048268 "clathrin coat assembly" evidence=IEA
TAIR|locus:2132382 AT4G02650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040115 AT2G25430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006543 AT4G32285 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205558 AT1G05020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165615 AT5G57200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120780 AT4G25940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2049587 AT2G01600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182432 AT5G35200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006727 AT1G14910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SA65CAP4_ARATHNo assigned EC number0.63380.98280.9565yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_scaffold_28000124
hypothetical protein (581 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
pfam07651278 pfam07651, ANTH, ANTH domain 1e-108
smart00273127 smart00273, ENTH, Epsin N-terminal homology (ENTH) 2e-42
cd03564117 cd03564, ANTH_AP180_CALM, ANTH domain family; comp 1e-38
pfam01417124 pfam01417, ENTH, ENTH domain 7e-08
cd00197115 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain 8e-05
>gnl|CDD|219498 pfam07651, ANTH, ANTH domain Back     alignment and domain information 
 Score =  325 bits (835), Expect = e-108
 Identities = 118/286 (41%), Positives = 168/286 (58%), Gaps = 8/286 (2%)

Query: 30  LSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALK 89
            SDLEVA+VKAT H+E P ++KH+REIL  T  S A ++A    +S+RL  T+NW VALK
Sbjct: 1   DSDLEVAVVKATSHDEVPPKKKHVREILVGTS-SPAKVAALFWALSRRLPLTRNWVVALK 59

Query: 90  TLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDE 149
            LIL+ +LL EG P+  QE+  + RR + LL +S F D S S +WDY AF+R YA YLDE
Sbjct: 60  ALILVHKLLREGHPSVLQELLRARRRISSLLRISSF-DDSMSLTWDYGAFIRAYAKYLDE 118

Query: 150 RLEFRMQGRRGKRSMFGIDEDEEEASSAPACARATPVRDMKIEHLFSRIQHLQQVLERFL 209
           RL+F  +  R     F   E     +     +R T    M +E L   I  LQ++L+  L
Sbjct: 119 RLDFHRKLPR--DPTFERVEYGSLRAVGDPNSRYT----MSMEDLLDIIPKLQKLLDALL 172

Query: 210 ACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCR 269
            C+PTG+A  N  +I AL  ++KESF +Y  I E +  L+++F E+  PD+     I+ R
Sbjct: 173 KCKPTGNALTNECIIAALILLIKESFGLYGAINEGIINLLEKFFEMSKPDADAALGIYKR 232

Query: 270 VSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLELMDDFIRD 315
              Q++ L  FY  CK +G  RS E P++  I    L+ +++ +RD
Sbjct: 233 FVSQFERLKEFYEVCKNLGYFRSLEIPKLPHIPPNLLDALEEHLRD 278

AP180 is an endocytotic accessory proteins that has been implicated in the formation of clathrin-coated pits. The domain is involved in phosphatidylinositol 4,5-bisphosphate binding and is a universal adaptor for nucleation of clathrin coats. Length = 278
>gnl|CDD|214594 smart00273, ENTH, Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>gnl|CDD|239622 cd03564, ANTH_AP180_CALM, ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>gnl|CDD|216488 pfam01417, ENTH, ENTH domain Back     alignment and domain information
>gnl|CDD|238118 cd00197, VHS_ENTH_ANTH, VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 583
KOG0251491 consensus Clathrin assembly protein AP180 and rela 100.0
PF07651280 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an 100.0
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 100.0
cd03564117 ANTH_AP180_CALM ANTH domain family; composed of ad 99.97
smart00273127 ENTH Epsin N-terminal homology (ENTH) domain. 99.95
PF01417125 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (E 99.24
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 99.12
cd03571123 ENTH_epsin ENTH domain, Epsin family; The epsin (E 98.71
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 97.91
KOG2056336 consensus Equilibrative nucleoside transporter pro 97.76
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 95.58
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 95.49
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 95.42
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 95.31
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 94.96
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 94.91
cd03561133 VHS VHS domain family; The VHS domain is present i 94.12
KOG2057499 consensus Predicted equilibrative nucleoside trans 93.23
KOG2199462 consensus Signal transducing adaptor protein STAM/ 86.65
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-90  Score=749.19  Aligned_cols=476  Identities=39%  Similarity=0.588  Sum_probs=363.7

Q ss_pred             HHHHHhhhcchhhhhhccCCCCCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhcccCCCChHHH
Q 007960            8 KAIGAVKDKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVA   87 (583)
Q Consensus         8 ka~GalKD~tsig~Akv~~~~~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~kt~nWiVA   87 (583)
                      +|+|++||++|+|+|+|  ++.+++|++||+|||+|+++|||+|||+.||.+|+.+|+++.+|+++|++||++||||+||
T Consensus         1 ~~~gaiKD~~s~~~a~v--~~~~~~l~~AV~KATsh~~~ppk~k~l~~Il~~ts~~~~~i~~~v~aLs~Rl~~TrnW~VA   78 (491)
T KOG0251|consen    1 RAIGAIKDRTSIGKASV--ASAGSDLEKAVVKATSHDDMPPKDKYLDEILSATSSSPASIPSCVHALSERLNKTRNWTVA   78 (491)
T ss_pred             CCccccchhhhhHHHHh--hhhhhhHHHHHHhhccCCCCCccHHHHHHHHHHhcCCcccHHHHHHHHHHHhCCCcceeeh
Confidence            47999999999999999  4588999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCChhhHHHHHHhhhcCCccccccccccCCCCCCCcchHHHHHHHHHHHHHHh-hhhccCCCCCcccc
Q 007960           88 LKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDERLE-FRMQGRRGKRSMFG  166 (583)
Q Consensus        88 lKtLillHrLLReG~p~f~~El~~~srrg~~~LnLs~F~D~s~~~s~dysafVR~Ya~YLdeRL~-F~~~~~~~~~g~~d  166 (583)
                      +|+||||||||++|++.|.+|+.++    +++|+|++|+|++++.+|||++|||+|++||+||++ |++.       ++|
T Consensus        79 lKsLIliH~ll~~G~~~f~~~l~~~----~~~l~lS~F~d~s~~~~~d~safVR~Ya~YLderl~~~~~~-------~~d  147 (491)
T KOG0251|consen   79 LKALILIHRLLKEGDPSFEQELLSR----NLILNLSDFRDKSSSLTWDMSAFVRTYALYLDERLECYRVL-------GFD  147 (491)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHhc----ccccchhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHh-------ccc
Confidence            9999999999999999999999765    368999999999988999999999999999999999 7777       444


Q ss_pred             ccchhhhhcccccCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHccCcCCCCCCchHHHHhHhHHHHHHHHHHHHHHHHH
Q 007960          167 IDEDEEEASSAPACARATPVRDMK-IEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEIL  245 (583)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~lr~l~-~e~LL~~L~~LQ~Lldrll~crp~g~a~~N~~il~AL~lLVkDS~~LY~~i~egl  245 (583)
                      ++....       .+.....+.+. .+.+|++++.||.||+++|+|+|++.+.+|.+|++||.+||+|||+||+.||+||
T Consensus       148 ~~~~~~-------~~~k~~~~~~~~~~~~l~~i~~LQ~lld~ll~~~p~~~~~~N~lI~~A~~lvvkdsf~ly~~i~~gi  220 (491)
T KOG0251|consen  148 IEKVKR-------GKEKTKDRSSKSTDKLLKTIPKLQNLLDRLLKCRPTGSALNNGLIIEAFELVVKDSFKLYAAINDGI  220 (491)
T ss_pred             cccccC-------cccccccccccchHHHHHHHHHHHHHHHHHHcCCCCchhhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443221       11234455666 7789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCchHHHHHHHHHHhhhhhhhhcccc
Q 007960          246 GILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLELMDDFIRDKSALAQSKKN  325 (583)
Q Consensus       246 ~~Lld~ffeM~~~Da~kaleiykrf~kQ~e~L~~Fy~~Ck~l~~~r~~eiP~L~~~P~~fL~~LEEylrd~~~~~~~~~~  325 (583)
                      ++|+|+||||+++||+++|+|||||.+|+++|.+||++||++|+.|.++||+|+++|.++|++|||||++..........
T Consensus       221 ~~Llekffem~~~~a~~al~iykr~~~q~e~L~~f~~~ck~~g~~r~~~iP~l~~i~~s~l~~lEe~l~~~~~~~~~~~~  300 (491)
T KOG0251|consen  221 INLLEKFFEMSKHDAIKALDIYKRFLSQTEKLSEFLKVCKSVGVDRGFEIPVLKRIPISLLEALEEHLRDVEGGKAKTAK  300 (491)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCcchhhcCHHHHHHHHHHHhhcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999875433221


Q ss_pred             ccccCCCCCC--cCCCCCC----cccccCCcccccccCCCCCCCCC--CCCcchhhccccccCCCCCCCccccCCCCCCC
Q 007960          326 VDFQLTNEPE--QEQDDND----KDAETTNQEDMNETKALPAPEES--TPAEEEKKEENVKQETKDTEKEADLLNLGEDS  397 (583)
Q Consensus       326 ~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dll~l~~~~  397 (583)
                      .    .+...  .+.+.++    .+.+.+.++ +  +++.+.+...  ..|.+.+ +.+...++......+||+.++...
T Consensus       301 ~----~~~~~~~~~~~~~e~~~~~~~~~e~~~-~--i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  372 (491)
T KOG0251|consen  301 V----SPVSQFSTDFESSESSSRLEEPEEQKE-V--IEELQEPLEQEEDQPSPNS-ENPEANDQAGIATDDLLLQPDNLP  372 (491)
T ss_pred             c----CCccccccchhccccccccccchhhhh-c--cccccccccccccCCCCCC-CCccccccccccCcchhhcccCCC
Confidence            1    11110  0001000    011111211 2  4444433211  2121111 111111110011124555555443


Q ss_pred             -CChHHHhccccccccccCCCCCCCCCCCCcccc--ccCCCCccchhhhhccccccccccccccCCchhhhhhhhchhHH
Q 007960          398 -ATCDEQADKLALALFDSGNAPVDQAGAGRTAWE--AFKDETADWETALVQSASNLNHQTAALGGGFDMLLLDGMYQQGA  474 (583)
Q Consensus       398 -~~~~e~~~~~alal~~~~~~~~~~~~~~~~~~~--~f~~~~~~WElaLV~~~s~~~~~~~~l~Gg~d~l~Ld~~y~~~~  474 (583)
                       .++.+..|+||||+ . .+.    .+  ..+|+  .+..+.++|++    .++    +  ++||||   +||||| ++.
T Consensus       373 ~~~~~~~~~~l~~~~-~-~~~----~~--~~~~~~~~~~~~~~~~~~----~~~----~--~~~g~~---~~~~~~-~~~  430 (491)
T KOG0251|consen  373 MFSASTAPNALALAL-P-FPN----HT--GSGWGLPAATPDSAAWET----ATM----Q--ALAGGL---TLNSMV-NNP  430 (491)
T ss_pred             ccccccCcchhhcCC-C-CCC----CC--CCccccccCCcchhhhhh----ccc----c--cccccc---eecccc-CCc
Confidence             56678999999999 2 221    11  33455  44455556665    111    2  899999   999999 888


Q ss_pred             HHHHhhhhc-cCCCCcccccCCCCCcccccCCCCCCCCCCCCCCCCccccccCCCCCchhchHHHHHHHHHHHHHHHHHH
Q 007960          475 TAVAMASAE-ASGSASSVALGSAGRPAMLALPAPPTTQAGATLPTDPFAASCAVAPPPFVQMSDLEKKQKLLVEEQLMWQ  553 (583)
Q Consensus       475 ~~~~~~~~~-~~g~~~sv~~~~~~~~~~~~~p~p~~~~~~~~~~~dpFaaS~~v~pp~~vqma~m~~~q~ll~~eq~~w~  553 (583)
                      +++.++.++ ++|++++++.|.   .++++++.|           +||+.|..+++|      + ..+|.++.|||+|||
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~~-----------~~~~~~~~~a~~------~-~~~~~~~~~~q~~~~  489 (491)
T KOG0251|consen  431 FRATVQTAPQGQGSQPFGAQPM---PAMAALPQP-----------YPVGQPPFPAQL------E-MAAQNAAQQQQQQAQ  489 (491)
T ss_pred             hhhhccccccccCCCccccCCc---hhhhccccc-----------CCCCCCCCcCcc------h-hhhhhhccccccccc
Confidence            887765544 778888888774   224445433           555555555555      3 456677888899998


Q ss_pred             H
Q 007960          554 Q  554 (583)
Q Consensus       554 q  554 (583)
                      |
T Consensus       490 ~  490 (491)
T KOG0251|consen  490 Q  490 (491)
T ss_pred             C
Confidence            7

>PF07651 ANTH: ANTH domain; InterPro: IPR011417 AP180 is an endocytotic accessory protein that has been implicated in the formation of clathrin-coated pits Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>cd03564 ANTH_AP180_CALM ANTH domain family; composed of adaptor protein 180 (AP180), clathrin assembly lymphoid myeloid leukemia protein (CALM) and similar proteins Back     alignment and domain information
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain Back     alignment and domain information
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2057 consensus Predicted equilibrative nucleoside transporter protein [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
3zyk_A296 Structure Of Calm (Picalm) Anth Domain Length = 296 7e-10
1hf8_A289 Calm-N N-Terminal Domain Of Clathrin Assembly Lymph 8e-10
3zym_A310 Structure Of Calm (Picalm) In Complex With Vamp8 Le 1e-09
3zyl_A271 Structure Of A Truncated Calm (Picalm) Anth Domain 2e-09
1hx8_A299 Crystal Structure Of N-Terminal Domain Of Drosophil 1e-06
>pdb|3ZYK|A Chain A, Structure Of Calm (Picalm) Anth Domain Length = 296 Back     alignment and structure 
Iteration: 1

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 56/259 (21%), Positives = 112/259 (43%), Gaps = 27/259 (10%)
Query: 37  IVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLNKTKNWTVALKTLILIQR 96
           + KAT HE    ++KH+  ++  T      I    + + +R   + +W V  K+LI    
Sbjct: 33  VCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNS-SWVVVFKSLITTHH 91
Query: 97  LLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSRSNSWDYSAFVRTYALYLDER-LEFRM 155
           L+  G+  + Q  + ++R    L N+S+F D S    +D S F+R Y+ YL+E+ + +R 
Sbjct: 92  LMVYGNERFIQ--YLASR--NTLFNLSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQ 147
Query: 156 QG---RRGKRSMFGIXXXXXXXXXXPACARATPVRDMKIEHLFSRIQHLQQVLERFLACR 212
                 + KR   G+                  +R M  E L   +  +Q  ++  L   
Sbjct: 148 VAFDFTKVKRGADGV------------------MRTMNTEKLLKTVPIIQNQMDALLDFN 189
Query: 213 PTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSK 272
              +   N V+  A   + K++ +++    E +  L++++ +++     +  DI+ +   
Sbjct: 190 VNSNELTNGVINAAFMLLFKDAIRLFAAYNEGIINLLEKYFDMKKNQCKEGLDIYKKFLT 249
Query: 273 QYDELDSFYGWCKTVGIAR 291
           +   +  F    + VGI R
Sbjct: 250 RMTRISEFLKVAEQVGIDR 268
>pdb|1HF8|A Chain A, Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid Myeloid Leukaemia Protein Length = 289 Back     alignment and structure
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8 Length = 310 Back     alignment and structure
>pdb|3ZYL|A Chain A, Structure Of A Truncated Calm (Picalm) Anth Domain Length = 271 Back     alignment and structure
>pdb|1HX8|A Chain A, Crystal Structure Of N-Terminal Domain Of Drosophila Ap180 Length = 299 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query583
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 9e-78
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 6e-74
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 4e-73
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 4e-07
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 1e-04
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 2e-04
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Length = 271 Back     alignment and structure
 Score =  246 bits (628), Expect = 9e-78
 Identities = 57/291 (19%), Positives = 118/291 (40%), Gaps = 25/291 (8%)

Query: 2   APSKFKKAIGAVKDKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTC 61
           +P     +  ++ D+ +     V  S     +   + KAT HE    ++KH+  ++  T 
Sbjct: 2   SPIGIHMSGQSLTDRITAAQHSVTGS----AVSKTVCKATTHEIMGPKKKHLDYLIQCTN 57

Query: 62  YSRAYISACVNIISKRLNKTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLN 121
                I    + + +R   + +W V  K+LI    L+  G+  + Q +         L N
Sbjct: 58  EMNVNIPQLADSLFERTTNS-SWVVVFKSLITTHHLMVYGNERFIQYL----ASRNTLFN 112

Query: 122 MSDFRDTSRSNSWDYSAFVRTYALYLDERL-EFRMQGRRGKRSMFGIDEDEEEASSAPAC 180
           +S+F D S    +D S F+R Y+ YL+E+   +R             D  + +  +    
Sbjct: 113 LSNFLDKSGLQGYDMSTFIRRYSRYLNEKAVSYRQ---------VAFDFTKVKRGADG-- 161

Query: 181 ARATPVRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYD 240
                +R M  E L   +  +Q  ++  L      +   N V+  A   + K++ +++  
Sbjct: 162 ----VMRTMNTEKLLKTVPIIQNQMDALLDFNVNSNELTNGVINAAFMLLFKDAIRLFAA 217

Query: 241 ITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIAR 291
             E +  L++++ +++     +  DI+ +   +   +  F    + VGI R
Sbjct: 218 YNEGIINLLEKYFDMKKNQCKEGLDIYKKFLTRMTRISEFLKVAEQVGIDR 268
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Length = 310 Back     alignment and structure
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Length = 299 Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Length = 148 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Length = 144 Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Length = 140 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query583
1hx8_A299 Synapse-enriched clathrin adaptor protein LAP; all 100.0
3zym_A310 Phosphatidylinositol-binding clathrin assembly PR 100.0
3zyl_A271 Phosphatidylinositol-binding clathrin assembly PR; 100.0
1eyh_A144 Epsin; superhelix of helices, cell cycle; 1.56A {R 99.33
1inz_A148 EPS15-interacting portein(epsin); alpha-helix, rik 99.28
1xgw_A176 Epsin 4; ENTH, enthoprotin, clathrin-associated, e 98.9
3onk_A150 Epsin-3, ENT3; helix, protein transport; 2.09A {Sa 98.85
1vdy_A140 Hypothetical protein (RAFL09-17-B18); structural g 98.06
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 95.68
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 95.65
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 95.64
3g2s_A149 C-terminal fragment of sortilin-related receptor; 95.62
3rru_A152 TOM1L1 protein; structural genomics, PSI-biology, 95.38
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 95.19
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 95.18
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 95.14
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 94.24
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3 Back     alignment and structure
Probab=100.00  E-value=5.2e-74  Score=592.91  Aligned_cols=283  Identities=20%  Similarity=0.365  Sum_probs=242.7

Q ss_pred             CChhhHHHHHHHhh-hcchhhhhhccCCCCCchHHHHHHhhcCCCCCCCchhhHHHHHHhhccCCccHHHHHHHHHhccc
Q 007960            1 MAPSKFKKAIGAVK-DKTSIGLAKVGSSNSLSDLEVAIVKATRHEEYPAEEKHIREILSLTCYSRAYISACVNIISKRLN   79 (583)
Q Consensus         1 m~~~~~rka~GalK-D~tsig~Akv~~~~~~~dLevAIvKATsh~e~PPKeKHVr~Il~~Ts~sr~~v~~~v~aLsrRL~   79 (583)
                      |++++||+++||+| |+|++            ++++||+|||+|+++|||+||||+||.+|+.+++++++|+|+|.+| .
T Consensus         3 ~~~~~~~~~~~a~k~~~~~~------------~l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R-~   69 (299)
T 1hx8_A            3 MAGQTINDRLLAARHSLAGQ------------GLAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIER-S   69 (299)
T ss_dssp             -------------------C------------HHHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHH-H
T ss_pred             CchHHHHHHHHHHhhccchh------------HHHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhh-c
Confidence            88899999999999 88864            5777999999999999999999999999999999999999999999 5


Q ss_pred             CCCChHHHHHHHHHHHHHHhcCChhhHHHHHHhhhcCCccccccccccCCC-----------CCCCcchHHHHHHHHHHH
Q 007960           80 KTKNWTVALKTLILIQRLLSEGDPAYEQEIFFSTRRGTRLLNMSDFRDTSR-----------SNSWDYSAFVRTYALYLD  148 (583)
Q Consensus        80 kt~nWiVAlKtLillHrLLReG~p~f~~El~~~srrg~~~LnLs~F~D~s~-----------~~s~dysafVR~Ya~YLd  148 (583)
                      +++||+|+||+|||||||||||||.|++++.+  +  +++|+|++|+|+++           +.+||||+|||+|++||+
T Consensus        70 ~~~~w~va~K~LivlH~llreG~~~~~~~l~~--~--~~~l~l~~f~D~~~~~~~~~~~~~~~~~~d~s~~Ir~Ya~yL~  145 (299)
T 1hx8_A           70 QNANWVVVYKSLITTHHLMAYGNERFMQYLAS--S--NSTFNLSSFLDKGTVQDGGMGVPGGRMGYDMSPFIRRYAKYLN  145 (299)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHH--T--TCCCCCTTCCCCCC---CCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHh--C--CcccchhhhhcccccccccccccccccccchhHHHHHHHHHHH
Confidence            79999999999999999999999999999943  2  47999999999864           356899999999999999


Q ss_pred             HHHh-hhhccCCCCCccccccchhhhhcccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHccCcCCCCCCchHHHHhH
Q 007960          149 ERLE-FRMQGRRGKRSMFGIDEDEEEASSAPACARATPVRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVAL  227 (583)
Q Consensus       149 eRL~-F~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~lr~l~~e~LL~~L~~LQ~Lldrll~crp~g~a~~N~~il~AL  227 (583)
                      +|+. ||.+       ++|++...       .+.+.+++++|++++||++++.||+|||++++|++.+.+.+|+|+++||
T Consensus       146 ~r~~~f~~~-------~~d~~~~~-------~~~~~~~~~~l~~~~lL~~l~~lQ~li~~ll~~~~~~~~~~n~~~~~Al  211 (299)
T 1hx8_A          146 EKSLSYRAM-------AFDFCKVK-------RGKEEGSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSF  211 (299)
T ss_dssp             HHHHHHHHH-------SSCGGGC------------CCCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHH
T ss_pred             HHHHHHHHh-------CCCccccc-------cCccccchhhCCHHHHHHHHHHHHHHHHHHHCCCCCcccccchHHHHHH
Confidence            9965 9998       45554321       1224678999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCchHHHH
Q 007960          228 YPVVKESFQIYYDITEILGILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLE  307 (583)
Q Consensus       228 ~lLVkDS~~LY~~i~egl~~Lld~ffeM~~~Da~kaleiykrf~kQ~e~L~~Fy~~Ck~l~~~r~~eiP~L~~~P~~fL~  307 (583)
                      ++||+||++||+++|+||++|||+||||++.||++||+||+||.+|+++|++||++||+++|++ ++||+|+++|++||+
T Consensus       212 ~llv~Ds~~lY~~i~~gi~~lLe~~fem~~~d~~~al~iykrf~~q~~~L~~Fy~~c~~~~~~~-~~iP~L~~~p~~ll~  290 (299)
T 1hx8_A          212 MLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLD  290 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcCC-CCCCCCCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999977 899999999999999


Q ss_pred             HHHHHHhh
Q 007960          308 LMDDFIRD  315 (583)
Q Consensus       308 ~LEEylrd  315 (583)
                      +|||||++
T Consensus       291 ~Lee~l~~  298 (299)
T 1hx8_A          291 ALEQHLAT  298 (299)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99999996
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus} Back     alignment and structure
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A* Back     alignment and structure
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A Back     alignment and structure
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1 Back     alignment and structure
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E Back     alignment and structure
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A Back     alignment and structure
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens} Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 583
d1hx8a1133 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosop 2e-46
d1hf8a1132 a.7.8.2 (A:150-281) Clathrin assembly lymphoid mye 8e-45
d1hx8a2140 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Droso 6e-38
d1hf8a2131 a.118.9.3 (A:19-149) Clathrin assembly lymphoid my 2e-37
d1eyha_144 a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [T 3e-26
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 133 Back     information, alignment and structure

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  157 bits (398), Expect = 2e-46
 Identities = 19/130 (14%), Positives = 57/130 (43%), Gaps = 1/130 (0%)

Query: 186 VRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEIL 245
           +R M  E L   +  LQ  L+  L      +  +N V+ ++   + ++  +++    + +
Sbjct: 4   LRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGI 63

Query: 246 GILIDRFMELEVPDSVKVYDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKK 305
             L++++ ++    +    D++ +   + D +  F    + VGI +  + P++ +     
Sbjct: 64  INLLEKYFDMNKKHARDALDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSL 122

Query: 306 LELMDDFIRD 315
           L+ ++  +  
Sbjct: 123 LDALEQHLAT 132
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 140 Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query583
d1hx8a1133 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 100.0
d1hf8a1132 Clathrin assembly lymphoid myeloid leukaemia prote 100.0
d1hx8a2140 AP180 (Lap) {Fruit fly (Drosophila melanogaster) [ 99.97
d1hf8a2131 Clathrin assembly lymphoid myeloid leukaemia prote 99.97
d1eyha_144 Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} 99.8
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 96.11
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 95.47
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 95.44
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 94.46
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 93.87
>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: Spectrin repeat-like
superfamily: GAT-like domain
family: Phosphoinositide-binding clathrin adaptor, domain 2
domain: AP180 (Lap)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=2e-39  Score=295.71  Aligned_cols=131  Identities=15%  Similarity=0.345  Sum_probs=128.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccCcCCCCCCchHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhHHHH
Q 007960          184 TPVRDMKIEHLFSRIQHLQQVLERFLACRPTGSAKNNRVVIVALYPVVKESFQIYYDITEILGILIDRFMELEVPDSVKV  263 (583)
Q Consensus       184 ~~lr~l~~e~LL~~L~~LQ~Lldrll~crp~g~a~~N~~il~AL~lLVkDS~~LY~~i~egl~~Lld~ffeM~~~Da~ka  263 (583)
                      ..+|+|++++||++++++|+||+|+++|+|.|++.+|.|+++||++||+|||+||+.+|+||+||+|+||||+++||++|
T Consensus         2 ~~lr~m~~~~LL~~l~~lQ~lld~Ll~c~p~~~~~~n~vi~~A~~llvkds~~lY~~inegiinLLd~fFem~k~da~~a   81 (133)
T d1hx8a1           2 GSLRSMNAEKLLKTLPVLQAQLDALLEFDCQSNDLSNGVINMSFMLLFRDLIRLFACYNDGIINLLEKYFDMNKKHARDA   81 (133)
T ss_dssp             CCTTTCCHHHHHHHHHHHHHHHHHHHTTCCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHH
T ss_pred             chhhcCCHHHHHHHHHHHHHHHHHHHcCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCCchHHHHHHHHHHhh
Q 007960          264 YDIFCRVSKQYDELDSFYGWCKTVGIARSSEYPEVERITYKKLELMDDFIRD  315 (583)
Q Consensus       264 leiykrf~kQ~e~L~~Fy~~Ck~l~~~r~~eiP~L~~~P~~fL~~LEEylrd  315 (583)
                      |+||+||++|+++|.+||+|||++|++| .+||+|+++|+++|++|||||++
T Consensus        82 l~iyk~~~~q~e~L~~f~~~ck~~g~~r-~e~P~l~~~p~sll~~LEe~l~~  132 (133)
T d1hx8a1          82 LDLYKKFLVRMDRVGEFLKVAENVGIDK-GDIPDLTKAPSSLLDALEQHLAT  132 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCG-GGSCCCCCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCccc-cCCCCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999987 69999999999999999999986
>d1hf8a1 a.7.8.2 (A:150-281) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hx8a2 a.118.9.3 (A:22-161) AP180 (Lap) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1hf8a2 a.118.9.3 (A:19-149) Clathrin assembly lymphoid myeloid leukaemia protein, Calm {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1eyha_ a.118.9.1 (A:) Epsin 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure