Citrus Sinensis ID: 008022

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-
Protein Sequence
MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMANK
Secondary Structure (PSIPRED)
cHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHcccccEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mieklgekCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMinpiysnmkrdgmepnvFTYNILLKALCKNNRVDGAYKLLVEMGnkgcapdavSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVdrgidpnviTYSTIISSLcdvgnvetslgilgqmfvrgcnpnihSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGlcsngsmdeAVSVSYQmeenscppnvttYSALIDGFAKAGNLLGASQIWNRmisngcspnvVAYTCMVKVLCQNNMFHQAHSLIEKmafencppntvtFNTFIKGLCGCGRVDWAMKLLDQMKqyeclpniTTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIegtkldaiTFNIIIYAYCKQGKVNNAIQLLDRirgggewnpdiISYTSLLWGICNSGGMQEAFIYLQKMLnegicpnfaTWNVLVRSLFsnlghlgpvyilddimank
Flexible Loop (DISEMBL)
mieklgekceiDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNlghlgpvyilddimank
Low Complexity Region (SEG)
MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMANK
Disordered region (IsUnstruct)
*******KCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDI****
Disordered Region (DISOPRED)
MIEKLG*KCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMANK
Disordered Region (DISEMBL)
MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMANK
Disordered Region (DISPRO)
MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMAN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMANK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	581	2.2.26 [Sep-21-2011]
Q9M302	659	Pentatricopeptide repeat-	yes	no	0.975	0.860	0.574	0.0
Q9FMF6	730	Pentatricopeptide repeat-	no	no	0.948	0.754	0.329	2e-91
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.963	0.742	0.301	6e-84
Q9LSL9	915	Pentatricopeptide repeat-	no	no	0.912	0.579	0.307	1e-77
Q6NQ83	619	Pentatricopeptide repeat-	no	no	0.910	0.854	0.285	5e-76
Q9LQ16	632	Pentatricopeptide repeat-	no	no	0.920	0.846	0.284	1e-74
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.826	0.642	0.3	2e-74
Q9CAN0	630	Pentatricopeptide repeat-	no	no	0.872	0.804	0.298	4e-74
Q9LQ14	629	Pentatricopeptide repeat-	no	no	0.882	0.815	0.292	7e-74
Q9CAN5	614	Pentatricopeptide repeat-	no	no	0.889	0.842	0.291	2e-73

>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810 OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/581 (57%), Positives = 432/581 (74%), Gaps = 14/581 (2%)

Query: 1   MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
           MI KL    ++D VQYLLQQMK++G  CSE +FISVI+ YR+VGLAE+A++MFYRI+EFG
Sbjct: 82  MIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFG 141

Query: 61  LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
             P+VKIYNH+LD LL ENR  MI  +Y +MKRDG EPNVFTYN+LLKALCKNN+VDGA 
Sbjct: 142 CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAK 201

Query: 121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHK 180
           KLLVEM NKGC PDAVSYTT++SS+C++G V+E RELA RF   VSVYNALINGLCKEH 
Sbjct: 202 KLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHD 261

Query: 181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240
            + AF L+ EMV++GI PNVI+YST+I+ LC+ G +E +   L QM  RGC+PNI++ +S
Sbjct: 262 YKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSS 321

Query: 241 LLKGYLLGGRTHEASDLWNRMIRE-GFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN 299
           L+KG  L G T +A DLWN+MIR  G  PNVVAY+TL+ G CS+G++ +AVSV   MEE 
Sbjct: 322 LVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEI 381

Query: 300 SCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQA 359
            C PN+ TY +LI+GFAK G+L GA  IWN+M+++GC PNVV YT MV+ LC+++ F +A
Sbjct: 382 GCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEA 441

Query: 360 HSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQM-KQYECLPNITTYNELLD 418
            SLIE M+ ENC P+  TFN FIKGLC  GR+DWA K+  QM +Q+ C PNI TYNELLD
Sbjct: 442 ESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLD 501

Query: 419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL 478
           GL + NR++EA+ L  EI   G++ +  TYNT+LHG C AG+   A QL+GKM+++G   
Sbjct: 502 GLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSP 561

Query: 479 DAITFNIIIYAYCKQGKVNNAIQLLDRIR-GGGEWNPDIISYTSLLWGICNSGGMQEAFI 537
           D IT N+II AYCKQGK   A Q+LD +  G  +W PD+ISYT+++WG+C S   ++  I
Sbjct: 562 DEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVI 621

Query: 538 YLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM 578
            L++M++ GI P+ ATW+VL+             +ILDDI+
Sbjct: 622 LLERMISAGIVPSIATWSVLIN-----------CFILDDIV 651

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1

 Score =  337 bits (863), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 187/567 (32%), Positives = 306/567 (53%), Gaps = 16/567 (2%)

Query: 1   MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIRE-F 59
           +I KLG   E   +  LL QMK EG+   E +FIS++  Y + G   Q  ++   +R  +
Sbjct: 117 LIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVY 176

Query: 60  GLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGA 119
             +PT K YN +L+ L++ N   +   ++ +M    + P +FT+ +++KA C  N +D A
Sbjct: 177 SCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSA 236

Query: 120 YKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEAREL-----AMRFGSGVSVYNALING 174
             LL +M   GC P++V Y T++ S+ K  +V EA +L      M        +N +I G
Sbjct: 237 LSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILG 296

Query: 175 LCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPN 234
           LCK  +I EA  ++  M+ RG  P+ ITY  +++ LC +G V+ +      +F R   P 
Sbjct: 297 LCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAA----KDLFYRIPKPE 352

Query: 235 IHSFTSLLKGYLLGGRTHEASDLWNRMIRE-GFLPNVVAYSTLIHGLCSNGSMDEAVSVS 293
           I  F +L+ G++  GR  +A  + + M+   G +P+V  Y++LI+G    G +  A+ V 
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412

Query: 294 YQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQN 353
           + M    C PNV +Y+ L+DGF K G +  A  + N M ++G  PN V + C++   C+ 
Sbjct: 413 HDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKE 472

Query: 354 NMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTY 413
           +   +A  +  +M  + C P+  TFN+ I GLC    +  A+ LL  M     + N  TY
Sbjct: 473 HRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTY 532

Query: 414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLI 473
           N L++  LR   +KEA +LV E+   G  L+ +TYN+++ G+CRAG V +A  L  KML 
Sbjct: 533 NTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLR 592

Query: 474 EGTKLDAITFNIIIYAYCKQGKVNNAIQLLDR--IRGGGEWNPDIISYTSLLWGICNSGG 531
           +G     I+ NI+I   C+ G V  A++      +RG     PDI+++ SL+ G+C +G 
Sbjct: 593 DGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGS---TPDIVTFNSLINGLCRAGR 649

Query: 532 MQEAFIYLQKMLNEGICPNFATWNVLV 558
           +++     +K+  EGI P+  T+N L+
Sbjct: 650 IEDGLTMFRKLQAEGIPPDTVTFNTLM 676

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  312 bits (799), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 182/603 (30%), Positives = 310/603 (51%), Gaps = 43/603 (7%)

Query: 4   KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMF-YRIREFGLK 62
           +LG     D ++ +L+ MK          F+ +I SY +  L ++ L +  + I EFGLK
Sbjct: 92  RLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLK 151

Query: 63  PTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKL 122
           P    YN +L+ L+  N   ++   ++ M   G++P+V T+N+L+KALC+ +++  A  +
Sbjct: 152 PDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILM 211

Query: 123 LVEMGNKGCAPDAVSYTT-----------------------------------IVSSICK 147
           L +M + G  PD  ++TT                                   IV   CK
Sbjct: 212 LEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCK 271

Query: 148 LGQVEEA----RELAMR--FGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVI 201
            G+VE+A    +E++ +  F      +N L+NGLCK   ++ A  ++  M+  G DP+V 
Sbjct: 272 EGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVY 331

Query: 202 TYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRM 261
           TY+++IS LC +G V+ ++ +L QM  R C+PN  ++ +L+       +  EA++L   +
Sbjct: 332 TYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVL 391

Query: 262 IREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNL 321
             +G LP+V  +++LI GLC   +   A+ +  +M    C P+  TY+ LID     G L
Sbjct: 392 TSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKL 451

Query: 322 LGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTF 381
             A  +  +M  +GC+ +V+ Y  ++   C+ N   +A  + ++M       N+VT+NT 
Sbjct: 452 DEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTL 511

Query: 382 IKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGI 441
           I GLC   RV+ A +L+DQM      P+  TYN LL    R   +K+A ++V  +   G 
Sbjct: 512 IDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571

Query: 442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQ 501
           + +IVTY T++ G+C+AG V  A +LL  + ++G  L    +N +I    ++ K   AI 
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAIN 631

Query: 502 LLDRIRGGGEWNPDIISYTSLLWGICNSGG-MQEAFIYLQKMLNEGICPNFATWNVLVRS 560
           L   +    E  PD +SY  +  G+CN GG ++EA  +L ++L +G  P F++  +L   
Sbjct: 632 LFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEG 691

Query: 561 LFS 563
           L +
Sbjct: 692 LLT 694

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1

 Score =  291 bits (744), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/537 (30%), Positives = 281/537 (52%), Gaps = 7/537 (1%)

Query: 31  GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSN 90
           G + +++NS  R GL ++  +++  + E  + P +  YN +++           N   S 
Sbjct: 184 GCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSK 243

Query: 91  MKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQ 150
           +   G++P+ FTY  L+   C+   +D A+K+  EM  KGC  + V+YT ++  +C   +
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303

Query: 151 VEEARELAMRFGSG-----VSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYST 205
           ++EA +L ++         V  Y  LI  LC   +  EA  L+ EM + GI PN+ TY+ 
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363

Query: 206 IISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREG 265
           +I SLC     E +  +LGQM  +G  PN+ ++ +L+ GY   G   +A D+   M    
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423

Query: 266 FLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGAS 325
             PN   Y+ LI G C + ++ +A+ V  +M E    P+V TY++LIDG  ++GN   A 
Sbjct: 424 LSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAY 482

Query: 326 QIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGL 385
           ++ + M   G  P+   YT M+  LC++    +A  L + +  +   PN V +   I G 
Sbjct: 483 RLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGY 542

Query: 386 CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNI 445
           C  G+VD A  +L++M    CLPN  T+N L+ GL    ++KEA  L  ++ K G+Q  +
Sbjct: 543 CKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTV 602

Query: 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDR 505
            T   ++H + + G    A+    +ML  GTK DA T+   I  YC++G++ +A  ++ +
Sbjct: 603 STDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAK 662

Query: 506 IRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLF 562
           +R  G  +PD+ +Y+SL+ G  + G    AF  L++M + G  P+  T+  L++ L 
Sbjct: 663 MRENG-VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLL 718

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1

 Score =  285 bits (730), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 153/535 (28%), Positives = 282/535 (52%), Gaps = 6/535 (1%)

Query: 48  QALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILL 107
            A+ +F  + +    PT   +N +  A+    ++ ++      M+ +G+E +++T  I++
Sbjct: 53  DAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMI 112

Query: 108 KALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEA-----RELAMRFG 162
              C+  ++  A+ +L      G  PD ++++T+V+  C  G+V EA     R + M+  
Sbjct: 113 NCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQR 172

Query: 163 SGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGI 222
             +   + LINGLC + ++ EA  L+  MV+ G  P+ +TY  +++ LC  GN   +L +
Sbjct: 173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232

Query: 223 LGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCS 282
             +M  R    ++  ++ ++      G   +A  L+N M  +G   +VV YS+LI GLC+
Sbjct: 233 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCN 292

Query: 283 NGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVA 342
           +G  D+   +  +M   +  P+V T+SALID F K G LL A +++N MI+ G +P+ + 
Sbjct: 293 DGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 352

Query: 343 YTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMK 402
           Y  ++   C+ N  H+A+ + + M  + C P+ VT++  I   C   RVD  M+L  ++ 
Sbjct: 353 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS 412

Query: 403 QYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVV 462
               +PN  TYN L+ G  +  ++  A EL  E+   G+  ++VTY  +L G+C  G + 
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472

Query: 463 EAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSL 522
           +A ++  KM      L    +NIII+  C   KV++A  L   +   G   PD+++Y  +
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKG-VKPDVVTYNVM 531

Query: 523 LWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDI 577
           + G+C  G + EA +  +KM  +G  P+  T+N+L+R+     G +  V +++++
Sbjct: 532 IGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM 586

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1

 Score =  281 bits (719), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 156/549 (28%), Positives = 282/549 (51%), Gaps = 14/549 (2%)

Query: 25  GVSCSEGVFISVINSYRRVGL--------AEQALKMFYRIREFGLKPTVKIYNHILDALL 76
           G  C E  F S    YR +           + A+ +F  + +    P++  +N +L A+ 
Sbjct: 35  GSGCWERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVA 94

Query: 77  AENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAV 136
             N+F ++  +   M+  G+  +++TY+I +   C+ +++  A  +L +M   G  PD V
Sbjct: 95  KMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIV 154

Query: 137 SYTTIVSSICKLGQVEEARELA-----MRFGSGVSVYNALINGLCKEHKIEEAFWLLCEM 191
           + +++++  C   ++ +A  L      M +      +  LI+GL   +K  EA  L+ +M
Sbjct: 155 TLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQM 214

Query: 192 VDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRT 251
           V RG  P+++TY T+++ LC  G+++ +L +L +M       ++  + +++ G       
Sbjct: 215 VQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHM 274

Query: 252 HEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSAL 311
            +A +L+  M  +G  P+V  YS+LI  LC+ G   +A  +   M E    PNV T+SAL
Sbjct: 275 DDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSAL 334

Query: 312 IDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENC 371
           ID F K G L+ A ++++ MI     P++  Y+ ++   C ++   +A  + E M  ++C
Sbjct: 335 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 394

Query: 372 PPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFE 431
            PN VT++T IKG C   RV+  M+L  +M Q   + N  TY  L+ G  +      A  
Sbjct: 395 FPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQM 454

Query: 432 LVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYC 491
           +  ++   G+  NI+TYN +L G+C+ G + +A  +   +     + D  T+NI+I   C
Sbjct: 455 VFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMC 514

Query: 492 KQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF 551
           K GKV +  +L   +   G  +P++I+Y +++ G C  G  +EA   L+KM  +G  PN 
Sbjct: 515 KAGKVEDGWELFCNLSLKG-VSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNS 573

Query: 552 ATWNVLVRS 560
            T+N L+R+
Sbjct: 574 GTYNTLIRA 582

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  280 bits (716), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 162/540 (30%), Positives = 274/540 (50%), Gaps = 60/540 (11%)

Query: 29  SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR-FSMINPI 87
           +  VF  V+ SY R+ L ++AL + +  +  G  P V  YN +LDA +   R  S    +
Sbjct: 133 TSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENV 192

Query: 88  YSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK 147
           +  M    + PNVFTYNIL++  C    +D A  L  +M  KGC P+ V+Y T++   CK
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252

Query: 148 LGQVEEA----RELAMR-FGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDR-------- 194
           L ++++     R +A++     +  YN +INGLC+E +++E  ++L EM  R        
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVT 312

Query: 195 ---------------------------GIDPNVITYSTIISSLCDVGNVETSLGILGQMF 227
                                      G+ P+VITY+++I S+C  GN+  ++  L QM 
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372

Query: 228 VRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMD 287
           VRG  PN  ++T+L+ G+   G  +EA  +   M   GF P+VV Y+ LI+G C  G M+
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432

Query: 288 EAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMV 347
           +A++V   M+E    P+V +YS ++ GF ++ ++  A ++   M+  G  P+ + Y+ ++
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492

Query: 348 KVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECL 407
           +  C+     +A  L E+M     PP+  T+   I   C  G ++ A++L ++M +   L
Sbjct: 493 QGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552

Query: 408 PNITTYNELLDGLLRVNRVKEAFELV----------------TEIEKCG-IQLNIVTYNT 450
           P++ TY+ L++GL + +R +EA  L+                T IE C  I+   V   +
Sbjct: 553 PDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVV--S 610

Query: 451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG 510
           ++ G C  GM+ EA Q+   ML +  K D   +NI+I+ +C+ G +  A  L   +   G
Sbjct: 611 LIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSG 670

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1

 Score =  279 bits (714), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 153/512 (29%), Positives = 273/512 (53%), Gaps = 5/512 (0%)

Query: 1   MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
           ++  + +  + D V  L +QM+  G+S +   +  +IN + R      AL +  ++ + G
Sbjct: 87  LLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLG 146

Query: 61  LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
            +P +   N +L+     NR S    +   M   G +P+ FT+N L+  L ++NR   A 
Sbjct: 147 YEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAV 206

Query: 121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSG-----VSVYNALINGL 175
            L+  M  KGC PD V+Y  +V+ +CK G ++ A  L  +   G     V +YN +I+ L
Sbjct: 207 ALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDAL 266

Query: 176 CKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNI 235
           C    + +A  L  EM ++GI PNV+TY+++I  LC+ G    +  +L  M  R  NPN+
Sbjct: 267 CNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNV 326

Query: 236 HSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQ 295
            +F++L+  ++  G+  EA  L++ MI+    P++  YS+LI+G C +  +DEA  +   
Sbjct: 327 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 386

Query: 296 MEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM 355
           M    C PNV TY+ LI GF KA  +    +++  M   G   N V YT ++    Q   
Sbjct: 387 MISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARE 446

Query: 356 FHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNE 415
              A  + ++M  +   P+ +T++  + GLC  G+V+ A+ + + +++ +  P+I TYN 
Sbjct: 447 CDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNI 506

Query: 416 LLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG 475
           +++G+ +  +V++ ++L   +   G++ N+VTY T++ G CR G+  EA  L  +M  EG
Sbjct: 507 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEG 566

Query: 476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIR 507
              D+ T+N +I A+ + G    + +L+  +R
Sbjct: 567 PLPDSGTYNTLIRAHLRDGDKAASAELIREMR 598

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2

 Score =  278 bits (712), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 152/519 (29%), Positives = 275/519 (52%), Gaps = 6/519 (1%)

Query: 47  EQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL 106
           + A+ +F  + +    P++  +N +L A+   N+F ++  +   M+   +  ++++YNIL
Sbjct: 62  DDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNIL 121

Query: 107 LKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEAREL-----AMRF 161
           +   C+ +++  A  +L +M   G  PD V+ +++++  C   ++ EA  L      M +
Sbjct: 122 INCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEY 181

Query: 162 GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLG 221
                 +N LI+GL   +K  EA  L+  MV RG  P++ TY T+++ LC  G+++ +L 
Sbjct: 182 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 241

Query: 222 ILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLC 281
           +L +M       ++  +T+++         ++A +L+  M  +G  PNVV Y++LI  LC
Sbjct: 242 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 301

Query: 282 SNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVV 341
           + G   +A  +   M E    PNV T+SALID F K G L+ A ++++ MI     P++ 
Sbjct: 302 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 361

Query: 342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQM 401
            Y+ ++   C ++   +A  + E M  ++C PN VT+NT IKG C   RV+  M+L  +M
Sbjct: 362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421

Query: 402 KQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV 461
            Q   + N  TYN L+ GL +      A ++  ++   G+  +I+TY+ +L G+C+ G +
Sbjct: 422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 481

Query: 462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTS 521
            +A  +   +     + D  T+NI+I   CK GKV +   L   +   G   P++I YT+
Sbjct: 482 EKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG-VKPNVIIYTT 540

Query: 522 LLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRS 560
           ++ G C  G  +EA    ++M  +G  PN  T+N L+R+
Sbjct: 541 MISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRA 579

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1

 Score =  277 bits (708), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/524 (29%), Positives = 281/524 (53%), Gaps = 7/524 (1%)

Query: 19  QQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAE 78
           ++M++ GVS +   +  +IN   R      AL +  ++ + G  P++   N +L+     
Sbjct: 89  EKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHG 148

Query: 79  NRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSY 138
           NR S    +   M   G +P+  T+  L+  L ++N+   A  L+  M  KGC PD V+Y
Sbjct: 149 NRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 208

Query: 139 TTIVSSICKLGQVEEARELAMRFGSG-----VSVYNALINGLCKEHKIEEAFWLLCEMVD 193
             +++ +CK G+ + A  L  +   G     V +Y+ +I+ LCK   +++A  L  EM +
Sbjct: 209 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDN 268

Query: 194 RGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHE 253
           +GI P+V TYS++IS LC+ G    +  +L  M  R  NPN+ +F SL+  +   G+  E
Sbjct: 269 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIE 328

Query: 254 ASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALID 313
           A  L++ MI+    PN+V Y++LI+G C +  +DEA  +   M    C P+V TY+ LI+
Sbjct: 329 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIN 388

Query: 314 GFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPP 373
           GF KA  ++   +++  M   G   N V YT ++    Q +    A  + ++M  +   P
Sbjct: 389 GFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHP 448

Query: 374 NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELV 433
           N +T+NT + GLC  G+++ AM + + +++ +  P+I TYN + +G+ +  +V++ ++L 
Sbjct: 449 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLF 508

Query: 434 TEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ 493
             +   G++ +++ YNT++ G C+ G+  EA+ L  KM  +G   D+ T+N +I A+ + 
Sbjct: 509 CSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRD 568

Query: 494 GKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFI 537
           G    + +L+  +R    +  D  +Y  L+  + + G + + F+
Sbjct: 569 GDKAASAELIKEMR-SCRFAGDASTY-GLVTDMLHDGRLDKGFL 610

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
255556466	665	pentatricopeptide repeat-containing prot	0.987	0.863	0.703	0.0
225432035	666	PREDICTED: pentatricopeptide repeat-cont	0.996	0.869	0.693	0.0
296083214	724	unnamed protein product [Vitis vinifera]	0.987	0.792	0.699	0.0
224108788	662	predicted protein [Populus trichocarpa]	0.944	0.829	0.670	0.0
449511869	660	PREDICTED: pentatricopeptide repeat-cont	0.879	0.774	0.652	0.0
449462136	660	PREDICTED: pentatricopeptide repeat-cont	0.879	0.774	0.652	0.0
357438845	806	Pentatricopeptide repeat-containing prot	0.941	0.678	0.628	0.0
356523400	664	PREDICTED: pentatricopeptide repeat-cont	0.996	0.871	0.601	0.0
15229026	659	pentatricopeptide repeat-containing prot	0.975	0.860	0.574	0.0
297816088	657	pentatricopeptide repeat-containing prot	0.944	0.835	0.574	0.0

>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/580 (70%), Positives = 492/580 (84%)

Query: 1   MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
           MIEKLG +C++DGVQYLLQQMK+EG+SCSE +FI+VIN+YRRVGLAEQALKMFYRIREFG
Sbjct: 85  MIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRIREFG 144

Query: 61  LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
            +PTVKIYNH+LDA+L+ENRF MI PIYSNMKRDG EPNV+TYNILLKALCKNNRVDGA 
Sbjct: 145 CQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGAC 204

Query: 121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHK 180
           KLLVEM NKGC PD VSYTT++SS+ KLG+VEEAREL++RF   VSVYNALING C+E+K
Sbjct: 205 KLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQPNVSVYNALINGFCREYK 264

Query: 181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240
           ++E F LL +MV++GIDPNVITYST+ISSL  +GNVE +L +  +MFVRGC+PN+++FTS
Sbjct: 265 VKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTS 324

Query: 241 LLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENS 300
           L+KGY + GR  EA ++WNRM  EGF PNVVAY+TLIHGLCS+G M EAVSVS +ME N 
Sbjct: 325 LMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNG 384

Query: 301 CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAH 360
           C PNV+TY ALIDGFAKAG+L+GAS+IWN+M++NGC PNVV YT MV VLC+++MF QA 
Sbjct: 385 CSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAW 444

Query: 361 SLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL 420
           SLIEKM+ +NCPPNTVTFNTFIKGLC  GRV+ A+ L  QM+QY C PNI TYNE+LDGL
Sbjct: 445 SLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGL 504

Query: 421 LRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480
           L+ NR+KEA ELVTE+E+ G++LN+VTYNTI  G C  G   EA +LLGKML+ G K DA
Sbjct: 505 LKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDA 564

Query: 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQ 540
           IT+N + YAYC QGKV  AIQLLD++  GG+W P++ +YTSLLWGICN  G++EA +YL 
Sbjct: 565 ITYNTLTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLD 624

Query: 541 KMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMAN 580
           KMLNEGIC N ATWN LVR LF++LGHLGP++ILDDI+ +
Sbjct: 625 KMLNEGICLNAATWNALVRGLFNSLGHLGPIHILDDILTS 664

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48810-like [Vitis vinifera]

 Score =  843 bits (2179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/580 (69%), Positives = 483/580 (83%), Gaps = 1/580 (0%)

Query: 1   MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
           MIEKL  + E+D VQYLLQQMK+EG+SCSE +FISVI SYRR G +EQALK FYR+++F 
Sbjct: 82  MIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFR 141

Query: 61  LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
           +KPTVKIYNHILDALL ENRF MINPIYSNMK+DGMEPNVFTYNILLKALCKNNRVDGA+
Sbjct: 142 VKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAH 201

Query: 121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHK 180
           KLLVEM +KGC PD VSYTT++SS+CKLG+V+EARELAM F   V VYNALING+CKE+ 
Sbjct: 202 KLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYT 261

Query: 181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240
            EEAF LL EM+++GIDPNVI+Y+TII++L D GNVE SL +L +MF RGC+PN+H+FTS
Sbjct: 262 FEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTS 321

Query: 241 LLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENS 300
           L+KG+ L G +HEA D W+RMIREG +PNVVAY+ L+HGLCS  S+ +AVSV  QME N 
Sbjct: 322 LIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEING 381

Query: 301 CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAH 360
           C PNV TYSALIDG+AKAG+L GAS++WN MI++GC PNVVAYTCMV VLC+N+MF+QA+
Sbjct: 382 CCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAY 441

Query: 361 SLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL 420
            LIE M  ENCPPNTVTFNTFIKGLCG GRVDWA+K+ DQM    C PN TTYNELLD L
Sbjct: 442 CLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSL 501

Query: 421 LRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480
           L+  R  EAF LV ++E  GI+LN+VTYNTI++G C AGM+ EA +LLGKM++ GTK DA
Sbjct: 502 LKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDA 561

Query: 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQ 540
           IT NI+I AYCKQGKVN AIQL+DR+   G+W+PDII+YTSL+ GIC   G++EA +YL+
Sbjct: 562 ITVNIVIDAYCKQGKVNIAIQLMDRL-SAGKWHPDIIAYTSLISGICTHIGVEEAIVYLR 620

Query: 541 KMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMAN 580
           +ML+EGI PN ATWNVLVR LFSN+GH G V  LD ++ +
Sbjct: 621 RMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLDAVLGS 660

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/575 (69%), Positives = 480/575 (83%), Gaps = 1/575 (0%)

Query: 1   MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
           MIEKL  + E+D VQYLLQQMK+EG+SCSE +FISVI SYRR G +EQALK FYR+++F 
Sbjct: 82  MIEKLASEREMDCVQYLLQQMKLEGISCSEDLFISVIGSYRRAGSSEQALKTFYRMQDFR 141

Query: 61  LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
           +KPTVKIYNHILDALL ENRF MINPIYSNMK+DGMEPNVFTYNILLKALCKNNRVDGA+
Sbjct: 142 VKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYNILLKALCKNNRVDGAH 201

Query: 121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHK 180
           KLLVEM +KGC PD VSYTT++SS+CKLG+V+EARELAM F   V VYNALING+CKE+ 
Sbjct: 202 KLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEARELAMSFTPSVPVYNALINGVCKEYT 261

Query: 181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240
            EEAF LL EM+++GIDPNVI+Y+TII++L D GNVE SL +L +MF RGC+PN+H+FTS
Sbjct: 262 FEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARGCSPNLHTFTS 321

Query: 241 LLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENS 300
           L+KG+ L G +HEA D W+RMIREG +PNVVAY+ L+HGLCS  S+ +AVSV  QME N 
Sbjct: 322 LIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGLCSKRSLGDAVSVFNQMEING 381

Query: 301 CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAH 360
           C PNV TYSALIDG+AKAG+L GAS++WN MI++GC PNVVAYTCMV VLC+N+MF+QA+
Sbjct: 382 CCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAY 441

Query: 361 SLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL 420
            LIE M  ENCPPNTVTFNTFIKGLCG GRVDWA+K+ DQM    C PN TTYNELLD L
Sbjct: 442 CLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSL 501

Query: 421 LRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480
           L+  R  EAF LV ++E  GI+LN+VTYNTI++G C AGM+ EA +LLGKM++ GTK DA
Sbjct: 502 LKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDA 561

Query: 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQ 540
           IT NI+I AYCKQGKVN AIQL+DR+   G+W+PDII+YTSL+ GIC   G++EA +YL+
Sbjct: 562 ITVNIVIDAYCKQGKVNIAIQLMDRL-SAGKWHPDIIAYTSLISGICTHIGVEEAIVYLR 620

Query: 541 KMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILD 575
           +ML+EGI PN ATWNVLVR LFSN+GH G V  LD
Sbjct: 621 RMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFLD 655

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa] gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/580 (67%), Positives = 477/580 (82%)

Query: 1   MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
           MI++LG + +IDG+QYLLQ MK+EG+SC+E +F+ VIN+YRR GLAEQALK FYRI EFG
Sbjct: 79  MIKRLGYERDIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFG 138

Query: 61  LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
            KP+VKIYNH+LDALL+EN+F MIN IY+NMKRDG+E NV+TYN+LLKALCKN+RVD A 
Sbjct: 139 CKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAAR 198

Query: 121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHK 180
           KLL EM  KGC PDAVSYTT+VSS+C+LG+VEEAREL+MR  S V VYNALING C+EHK
Sbjct: 199 KLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALINGFCREHK 258

Query: 181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240
           +EE F L  EM   GIDP+VITYST+I++L ++GNVE +L +L +MF+RGC+PN+H+FTS
Sbjct: 259 MEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTS 318

Query: 241 LLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENS 300
           L+KGY +GGR  EA DLWNRMI+EG  PN VAY+TLIHGLCS G M EAVSVS +ME N 
Sbjct: 319 LMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNG 378

Query: 301 CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAH 360
             PN TTYS LIDGFAKAG+L+GAS+IWN+MI+NGC PNVV YTCMV VLC+N+MF+ A 
Sbjct: 379 VFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHAL 438

Query: 361 SLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL 420
            LIE MA  NCPPNT+TFNTFIKGLC  G+ +WAMK+L+QM+QY C PN+TTYNE+LDGL
Sbjct: 439 HLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGL 498

Query: 421 LRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480
               R +EA ++V EIE+  I+ N+VTYNTIL G C AGM   A Q+ GK+L+ GTK D+
Sbjct: 499 FNAKRTREALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDS 558

Query: 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQ 540
           IT+N +IYAYCKQG+V  AIQL+DR+   GE  PD+ +YTSLLWG+CN  G+ EA ++L 
Sbjct: 559 ITYNTVIYAYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLD 618

Query: 541 KMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMAN 580
           KM+NEGICPN ATWN LVR LFS LGHLGP++I+D+I+AN
Sbjct: 619 KMINEGICPNRATWNALVRGLFSKLGHLGPIHIVDNILAN 658

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48810-like [Cucumis sativus]

 Score =  815 bits (2106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/578 (65%), Positives = 474/578 (82%)

Query: 1   MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
           MIE+LG +CE+D VQY+LQQMK++G++C E +FI +IN Y+RVG AEQALKMFYRI EFG
Sbjct: 80  MIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFG 139

Query: 61  LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
            KPTV+IYNH+LDALL+EN+F MINP+Y+NMK+DG+ PNVFTYNILLKALCKN+RVD A+
Sbjct: 140 CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAH 199

Query: 121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHK 180
           KL VEM NKGC PDAV+YTT+VSS+CK G++++ARELA RF   V VYNALI+G+CKE +
Sbjct: 200 KLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGR 259

Query: 181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240
           IE A  LL EM+D G+DPNV++YS II+SLC  GNVE +  +  QMF+RGC+ NIH+FT 
Sbjct: 260 IEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTP 319

Query: 241 LLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENS 300
           L+KG  + G+ +EA DLW  MI++G  PNVVAY+TLIHGLCSNGS++EA+ V  QM+ + 
Sbjct: 320 LIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSG 379

Query: 301 CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAH 360
           C PNVTTYS LIDGFAK+G+L+GAS+ WNRMIS+GC PNVV YTCMV VLC+N+MF QA+
Sbjct: 380 CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQAN 439

Query: 361 SLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL 420
           SL+EKM  E C PNT+TFNTFIKGLCG GRV+WAMKLL++M+ + CLPNITTYNELLD L
Sbjct: 440 SLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499

Query: 421 LRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480
            R+N+ +EAF L  EIE   +Q N+VTYNT+L+G  RAGM+ EA QL GK L+ GT  D+
Sbjct: 500 FRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDS 559

Query: 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQ 540
           IT+N +I+AYCKQGKV  A QL++R+    EW+PDII+YTSL+WG CN   ++EA  +L 
Sbjct: 560 ITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLD 619

Query: 541 KMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM 578
           K +N+GICPNFATWN LVR  F +LGH+GP++ILDDI+
Sbjct: 620 KAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDIL 657

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48810-like [Cucumis sativus]

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/578 (65%), Positives = 474/578 (82%)

Query: 1   MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
           MIE+LG +CE+D VQY+LQQMK++G++C E +FI +IN Y+RVG AEQALKMFYRI EFG
Sbjct: 80  MIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFG 139

Query: 61  LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
            KPTV+IYNH+LDALL+EN+F MINP+Y+NMK+DG+ PNVFTYNILLKALCKN+RVD A+
Sbjct: 140 CKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAH 199

Query: 121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHK 180
           KL VEM NKGC PDAV+YTT+VSS+CK G++++ARELA RF   V VYNALI+G+CKE +
Sbjct: 200 KLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPSVPVYNALIDGMCKEGR 259

Query: 181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240
           IE A  LL EM+D G+DPNV++YS II+SLC  GNVE +  +  QMF+RGC+ NIH+FT 
Sbjct: 260 IEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTFTP 319

Query: 241 LLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENS 300
           L+KG  + G+ +EA DLW  MI++G  PNVVAY+TLIHGLCSNGS++EA+ V  QM+ + 
Sbjct: 320 LIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSG 379

Query: 301 CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAH 360
           C PNVTTYS LIDGFAK+G+L+GAS+ WNRMIS+GC PNVV YTCMV VLC+N+MF QA+
Sbjct: 380 CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQAN 439

Query: 361 SLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL 420
           SL+EKM  E C PNT+TFNTFIKGLCG GRV+WAMKLL++M+ + CLPNITTYNELLD L
Sbjct: 440 SLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDAL 499

Query: 421 LRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480
            R+N+ +EAF L  EIE   +Q N+VTYNT+L+G  RAGM+ EA QL GK L+ GT  D+
Sbjct: 500 FRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDS 559

Query: 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQ 540
           IT+N +I+AYCKQGKV  A QL++R+    EW+PDII+YTSL+WG CN   ++EA  +L 
Sbjct: 560 ITYNTMIHAYCKQGKVKIAAQLVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLD 619

Query: 541 KMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM 578
           K +N+GICPNFATWN LVR  F +LGH+GP++ILDDI+
Sbjct: 620 KAINQGICPNFATWNALVRCFFDSLGHMGPIHILDDIL 657

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/579 (62%), Positives = 449/579 (77%)

Query: 1   MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
           MI+KLG   E+DGV YLLQQMK+E V CS+ +F  VI  YRR  L EQ LKMFYRIREFG
Sbjct: 80  MIDKLGRNNEMDGVSYLLQQMKLENVPCSQELFQFVIKCYRRSNLGEQGLKMFYRIREFG 139

Query: 61  LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
            +P+VKIYN +LDALL++N F MIN +Y+NMK +G+EPNVFTYN+LLKALC+N +VDGA 
Sbjct: 140 CEPSVKIYNLVLDALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGAC 199

Query: 121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHK 180
           KLLVEM NKGC PD VSYTT++SS+CKLG V++ARELAM+F   V VYNALI+G+CKE +
Sbjct: 200 KLLVEMSNKGCDPDDVSYTTVISSMCKLGDVDKARELAMKFEPVVPVYNALIHGVCKECR 259

Query: 181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240
            +EAF L+ EMVDRG+DPNVI+YST+IS L D+GNVE SL + G+MFVRGC PN+ +FTS
Sbjct: 260 FKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTS 319

Query: 241 LLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENS 300
           L+KG+ + GR  +A  LWN MIREG  PNVVAY+TLIHGLCS+G+MDEA+SV  QME++S
Sbjct: 320 LIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDS 379

Query: 301 CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAH 360
             PNVTTYS +I GFAK+G+L+ A + WN+MI+ GC PNVV YTCMV VLCQ +MF QA 
Sbjct: 380 IRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAF 439

Query: 361 SLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL 420
            LI+ M  + CPP  +TFN FIKGLC  GRV+WAM +LDQM++YECLPNI TYNELLDGL
Sbjct: 440 DLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDGL 499

Query: 421 LRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480
            R N  +EA  L+ E+E+  ++ + VTYNTI++G    GM  +  QLLGKML+ G KLD 
Sbjct: 500 FRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGMHQQVLQLLGKMLVNGIKLDT 559

Query: 481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQ 540
           IT N  + AYCK GKV  AI++LD I    E+  DII++T +LWGICN  G +EA +YL 
Sbjct: 560 ITVNTTVNAYCKLGKVKTAIKVLDNISAEKEFRADIITHTIILWGICNWLGTEEAVVYLH 619

Query: 541 KMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA 579
           +ML  GI PN ATWNVLVR  FS LGH+GP+ ILDDI+ 
Sbjct: 620 EMLKRGIFPNIATWNVLVRGFFSKLGHMGPIRILDDIIG 658

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48810-like [Glycine max]

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/584 (60%), Positives = 448/584 (76%), Gaps = 5/584 (0%)

Query: 1   MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
           MIEKLG   E+D + Y+L QMK+E + CS+  FI V+NSY+  GL ++ALKMFYRI+EFG
Sbjct: 79  MIEKLGRNSELDALHYILHQMKIERIPCSQDSFICVLNSYKNSGLGDRALKMFYRIKEFG 138

Query: 61  LKPTVKIYNHILDALLAE--NRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDG 118
            KPTVKIYNH+LDALL E  N+F MI  +Y NM+ +GMEPNVFTYN+LLKALCKN ++DG
Sbjct: 139 CKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGEGMEPNVFTYNVLLKALCKNGKLDG 198

Query: 119 AYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSG--VSVYNALINGLC 176
           A KLLVEM  +GC PD VSYTT+V+++C+ G+VEEARE+A RFG+   VSV NALI GLC
Sbjct: 199 ACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEAREVARRFGAEGVVSVCNALICGLC 258

Query: 177 KEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIH 236
           +E ++ E F L+ EMV  G+DPNV++YS++IS L DVG VE +L +LG+M  RGC PN+H
Sbjct: 259 REGRVGEVFGLMDEMVGNGVDPNVVSYSSVISWLSDVGEVELALAVLGKMIRRGCRPNVH 318

Query: 237 SFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQM 296
           +F+SL+KGY LGGR  E   LW  M+ EG  PNVV Y+TL++GLC +G++ EAV V  +M
Sbjct: 319 TFSSLMKGYFLGGRVGEGVGLWRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRM 378

Query: 297 EENS-CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM 355
           E++  C PNVTTYS L+ GF KAG+L GAS++WN+M++ G  PNVV YT MV VLC+N+M
Sbjct: 379 EKDCFCRPNVTTYSTLVHGFVKAGDLQGASEVWNKMVNCGVRPNVVVYTSMVDVLCKNSM 438

Query: 356 FHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNE 415
           F QA+ LI+ MA + CPP  VTFNTFIKGLC  GRV WAM+++DQM++Y CLP+  TYNE
Sbjct: 439 FDQAYRLIDNMATDGCPPTVVTFNTFIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNE 498

Query: 416 LLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG 475
           LLDGL  VN +KEA EL+ E+E+  ++LN+VTYNT+++G    G      Q+LG+ML+ G
Sbjct: 499 LLDGLFSVNELKEACELIRELEERKVELNLVTYNTVMYGFSSHGKEEWVLQVLGRMLVNG 558

Query: 476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEA 535
            K DAIT N++IYAY K GKV  AIQ LDRI  G E  PDII++TSLLWGICNS G++EA
Sbjct: 559 VKPDAITVNVVIYAYSKLGKVRTAIQFLDRITAGKELCPDIIAHTSLLWGICNSLGIEEA 618

Query: 536 FIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA 579
            +YL KMLN+GI PN ATW+VLVR  F  LGH+GP+ ILDDI+ 
Sbjct: 619 IVYLNKMLNKGIFPNIATWDVLVRGFFKKLGHMGPIRILDDILG 662

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229026|ref|NP_190450.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75183419|sp|Q9M302.1|PP270_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g48810 gi|7576219|emb|CAB87909.1| putative protein [Arabidopsis thaliana] gi|332644937|gb|AEE78458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/581 (57%), Positives = 432/581 (74%), Gaps = 14/581 (2%)

Query: 1   MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
           MI KL    ++D VQYLLQQMK++G  CSE +FISVI+ YR+VGLAE+A++MFYRI+EFG
Sbjct: 82  MIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFG 141

Query: 61  LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
             P+VKIYNH+LD LL ENR  MI  +Y +MKRDG EPNVFTYN+LLKALCKNN+VDGA 
Sbjct: 142 CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAK 201

Query: 121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHK 180
           KLLVEM NKGC PDAVSYTT++SS+C++G V+E RELA RF   VSVYNALINGLCKEH 
Sbjct: 202 KLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHD 261

Query: 181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240
            + AF L+ EMV++GI PNVI+YST+I+ LC+ G +E +   L QM  RGC+PNI++ +S
Sbjct: 262 YKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSS 321

Query: 241 LLKGYLLGGRTHEASDLWNRMIRE-GFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN 299
           L+KG  L G T +A DLWN+MIR  G  PNVVAY+TL+ G CS+G++ +AVSV   MEE 
Sbjct: 322 LVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEI 381

Query: 300 SCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQA 359
            C PN+ TY +LI+GFAK G+L GA  IWN+M+++GC PNVV YT MV+ LC+++ F +A
Sbjct: 382 GCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEA 441

Query: 360 HSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQM-KQYECLPNITTYNELLD 418
            SLIE M+ ENC P+  TFN FIKGLC  GR+DWA K+  QM +Q+ C PNI TYNELLD
Sbjct: 442 ESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLD 501

Query: 419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL 478
           GL + NR++EA+ L  EI   G++ +  TYNT+LHG C AG+   A QL+GKM+++G   
Sbjct: 502 GLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSP 561

Query: 479 DAITFNIIIYAYCKQGKVNNAIQLLDRIR-GGGEWNPDIISYTSLLWGICNSGGMQEAFI 537
           D IT N+II AYCKQGK   A Q+LD +  G  +W PD+ISYT+++WG+C S   ++  I
Sbjct: 562 DEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVI 621

Query: 538 YLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM 578
            L++M++ GI P+ ATW+VL+             +ILDDI+
Sbjct: 622 LLERMISAGIVPSIATWSVLIN-----------CFILDDIV 651

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816088|ref|XP_002875927.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297321765|gb|EFH52186.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  664 bits (1712), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/552 (57%), Positives = 413/552 (74%), Gaps = 3/552 (0%)

Query: 1   MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
           MI KL    ++D VQYLLQQMK++G  CSE +FISVI+ YR+VGLAE+A++MFYRI+EFG
Sbjct: 81  MIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFG 140

Query: 61  LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
             P+VKIYNH+LD LL ENR  MI  +Y +MKRDG EPNVFTYN+LLKALCKNN+VDGA 
Sbjct: 141 CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAK 200

Query: 121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHK 180
           KLLVEM NKGC P+AVSYTT++SS+C++G V+E R+LA RF   VSVYNALINGLCKE  
Sbjct: 201 KLLVEMSNKGCCPNAVSYTTVISSMCEVGMVKEGRQLAERFEPVVSVYNALINGLCKERD 260

Query: 181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240
            +    L+ EMV++GI PNVI+YST+I+ L + G +E +  +L QM  RGC+PNIH+ +S
Sbjct: 261 YKGGVELMSEMVEKGISPNVISYSTLINELSNSGQIELAFSLLAQMLKRGCHPNIHTLSS 320

Query: 241 LLKGYLLGGRTHEASDLWNRMIRE-GFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN 299
           L+KG  + G T +A D+WN+MIR  G  PNVVAY+TL+ G CS+G++D+AVSV   MEE 
Sbjct: 321 LVKGCFVRGTTFDALDMWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIDKAVSVFLHMEEI 380

Query: 300 SCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQA 359
            C PN+ TY +LI+GF K G+L GA  IWN+M+++GC PNVV YT MV+ LC+++ F +A
Sbjct: 381 GCSPNIRTYGSLINGFTKRGSLEGAVYIWNKMLTSGCCPNVVVYTSMVEALCRHSKFKEA 440

Query: 360 HSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQM-KQYECLPNITTYNELLD 418
            SLIE M+ ENC P+  TFN FIKGLC  GR+DWA K+  QM +QY C PNI TYNELLD
Sbjct: 441 ESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQYRCPPNIVTYNELLD 500

Query: 419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL 478
           GL + NR++EA+ L  EI   G++ +  TYNT+LHG C AG+   A QL+GKM++ G   
Sbjct: 501 GLAKANRIEEAYGLTREIFMRGVEWSTSTYNTLLHGSCNAGLPGIALQLVGKMMVNGKSP 560

Query: 479 DAITFNIIIYAYCKQGKVNNAIQLLDRIR-GGGEWNPDIISYTSLLWGICNSGGMQEAFI 537
           D IT N+II AYCKQGK   A+Q+LD +  G  +W PD+ISYT+++WG+C S   ++  I
Sbjct: 561 DEITMNMIILAYCKQGKAERAVQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVI 620

Query: 538 YLQKMLNEGICP 549
             ++M++E I P
Sbjct: 621 LFERMISERIIP 632

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
TAIR|locus:2099458	659	AT3G48810 "AT3G48810" [Arabido	0.960	0.846	0.586	2.1e-180
TAIR|locus:2173403	730	AT5G64320 "AT5G64320" [Arabido	0.951	0.757	0.330	2e-86
TAIR|locus:2083976	754	MEE40 "maternal effect embryo	0.969	0.746	0.294	5.1e-74
TAIR|locus:2155730	915	AT5G65560 "AT5G65560" [Arabido	0.910	0.578	0.307	2.8e-73
TAIR|locus:2077061	619	AT3G22470 "AT3G22470" [Arabido	0.908	0.852	0.286	3.6e-73
TAIR|locus:2019085	763	AT1G74580 "AT1G74580" [Arabido	0.970	0.739	0.283	3.2e-72
TAIR|locus:2015208	630	AT1G63130 [Arabidopsis thalian	0.927	0.855	0.296	9.9e-71
TAIR|locus:2026192	630	RPF2 "rna processing factor 2"	0.920	0.849	0.293	1.3e-70
TAIR|locus:2015494	629	RPF3 "RNA processing factor 3"	0.877	0.810	0.298	4.3e-70
TAIR|locus:2015228	614	AT1G63080 [Arabidopsis thalian	0.889	0.842	0.291	5.5e-70

TAIR|locus:2099458 AT3G48810 "AT3G48810" [Arabidopsis thaliana (taxid:3702)]

 Score = 1751 (621.4 bits), Expect = 2.1e-180, P = 2.1e-180
 Identities = 329/561 (58%), Positives = 425/561 (75%)

Query:     1 MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
             MI KL    ++D VQYLLQQMK++G  CSE +FISVI+ YR+VGLAE+A++MFYRI+EFG
Sbjct:    82 MIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFISVISVYRQVGLAERAVEMFYRIKEFG 141

Query:    61 LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
               P+VKIYNH+LD LL ENR  MI  +Y +MKRDG EPNVFTYN+LLKALCKNN+VDGA 
Sbjct:   142 CDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKALCKNNKVDGAK 201

Query:   121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHK 180
             KLLVEM NKGC PDAVSYTT++SS+C++G V+E RELA RF   VSVYNALINGLCKEH 
Sbjct:   202 KLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHD 261

Query:   181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS 240
              + AF L+ EMV++GI PNVI+YST+I+ LC+ G +E +   L QM  RGC+PNI++ +S
Sbjct:   262 YKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSS 321

Query:   241 LLKGYLLGGRTHEASDLWNRMIRE-GFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN 299
             L+KG  L G T +A DLWN+MIR  G  PNVVAY+TL+ G CS+G++ +AVSV   MEE 
Sbjct:   322 LVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEI 381

Query:   300 SCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQA 359
              C PN+ TY +LI+GFAK G+L GA  IWN+M+++GC PNVV YT MV+ LC+++ F +A
Sbjct:   382 GCSPNIRTYGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEA 441

Query:   360 HSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ-YECLPNITTYNELLD 418
              SLIE M+ ENC P+  TFN FIKGLC  GR+DWA K+  QM+Q + C PNI TYNELLD
Sbjct:   442 ESLIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLD 501

Query:   419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL 478
             GL + NR++EA+ L  EI   G++ +  TYNT+LHG C AG+   A QL+GKM+++G   
Sbjct:   502 GLAKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSP 561

Query:   479 DAITFNIIIYAYCKQGKVNNAIQLLDRIR-GGGEWNPDIISYTSLLWGICNSGGMQEAFI 537
             D IT N+II AYCKQGK   A Q+LD +  G  +W PD+ISYT+++WG+C S   ++  I
Sbjct:   562 DEITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVI 621

Query:   538 YLQKMLNEGICPNFATWNVLV 558
              L++M++ GI P+ ATW+VL+
Sbjct:   622 LLERMISAGIVPSIATWSVLI 642

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048445 "carpel morphogenesis" evidence=RCA

TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)]

 Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
 Identities = 187/565 (33%), Positives = 306/565 (54%)

Query:     1 MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIRE-F 59
             +I KLG   E   +  LL QMK EG+   E +FIS++  Y + G   Q  ++   +R  +
Sbjct:   117 LIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVY 176

Query:    60 GLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGA 119
               +PT K YN +L+ L++ N   +   ++ +M    + P +FT+ +++KA C  N +D A
Sbjct:   177 SCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSA 236

Query:   120 YKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMR-FGSG----VSVYNALING 174
               LL +M   GC P++V Y T++ S+ K  +V EA +L    F  G       +N +I G
Sbjct:   237 LSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILG 296

Query:   175 LCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPN 234
             LCK  +I EA  ++  M+ RG  P+ ITY  +++ LC +G V+ +      +F R   P 
Sbjct:   297 LCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAK----DLFYRIPKPE 352

Query:   235 IHSFTSLLKGYLLGGRTHEASDLWNRMIRE-GFLPNVVAYSTLIHGLCSNGSMDEAVSVS 293
             I  F +L+ G++  GR  +A  + + M+   G +P+V  Y++LI+G    G +  A+ V 
Sbjct:   353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412

Query:   294 YQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQN 353
             + M    C PNV +Y+ L+DGF K G +  A  + N M ++G  PN V + C++   C+ 
Sbjct:   413 HDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKE 472

Query:   354 NMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTY 413
             +   +A  +  +M  + C P+  TFN+ I GLC    +  A+ LL  M     + N  TY
Sbjct:   473 HRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTY 532

Query:   414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLI 473
             N L++  LR   +KEA +LV E+   G  L+ +TYN+++ G+CRAG V +A  L  KML 
Sbjct:   533 NTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLR 592

Query:   474 EGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQ 533
             +G     I+ NI+I   C+ G V  A++    +   G   PDI+++ SL+ G+C +G ++
Sbjct:   593 DGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGS-TPDIVTFNSLINGLCRAGRIE 651

Query:   534 EAFIYLQKMLNEGICPNFATWNVLV 558
             +     +K+  EGI P+  T+N L+
Sbjct:   652 DGLTMFRKLQAEGIPPDTVTFNTLM 676

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
 Identities = 170/577 (29%), Positives = 308/577 (53%)

Query:     4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMF-YRIREFGLK 62
             +LG     D ++ +L+ MK          F+ +I SY +  L ++ L +  + I EFGLK
Sbjct:    92 RLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLK 151

Query:    63 PTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKL 122
             P    YN +L+ L+  N   ++   ++ M   G++P+V T+N+L+KALC+ +++  A  +
Sbjct:   152 PDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILM 211

Query:   123 LVEMGNKGCAPDAVSYTTIVSSICKLGQVEEA---RELAMRFG---SGVSVYNALINGLC 176
             L +M + G  PD  ++TT++    + G ++ A   RE  + FG   S VSV N +++G C
Sbjct:   212 LEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSV-NVIVHGFC 270

Query:   177 KEHKIEEAFWLLCEMVDR-GIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNI 235
             KE ++E+A   + EM ++ G  P+  T++T+++ LC  G+V+ ++ I+  M   G +P++
Sbjct:   271 KEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDV 330

Query:   236 HSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQ 295
             +++ S++ G    G   EA ++ ++MI     PN V Y+TLI  LC    ++EA  ++  
Sbjct:   331 YTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARV 390

Query:   296 MEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM 355
             +      P+V T+++LI G     N   A +++  M S GC P+   Y  ++  LC    
Sbjct:   391 LTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK 450

Query:   356 FHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNE 415
               +A +++++M    C  + +T+NT I G C   +   A ++ D+M+ +    N  TYN 
Sbjct:   451 LDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510

Query:   416 LLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG 475
             L+DGL +  RV++A +L+ ++   G + +  TYN++L   CR G + +A  ++  M   G
Sbjct:   511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570

Query:   476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEA 535
              + D +T+  +I   CK G+V  A +LL  I+  G  N    +Y  ++ G+       EA
Sbjct:   571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI-NLTPHAYNPVIQGLFRKRKTTEA 629

Query:   536 FIYLQKMLNEGICPNFA-TWNVLVRSLFSNLGHLGPV 571
                 ++ML +   P  A ++ ++ R L  N G  GP+
Sbjct:   630 INLFREMLEQNEAPPDAVSYRIVFRGL-CNGG--GPI 663

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 165/536 (30%), Positives = 281/536 (52%)

Query:    31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSN 90
             G + +++NS  R GL ++  +++  + E  + P +  YN +++           N   S 
Sbjct:   184 GCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSK 243

Query:    91 MKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQ 150
             +   G++P+ FTY  L+   C+   +D A+K+  EM  KGC  + V+YT ++  +C   +
Sbjct:   244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303

Query:   151 VEEARELAMRFGSG-----VSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYST 205
             ++EA +L ++         V  Y  LI  LC   +  EA  L+ EM + GI PN+ TY+ 
Sbjct:   304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363

Query:   206 IISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREG 265
             +I SLC     E +  +LGQM  +G  PN+ ++ +L+ GY   G   +A D+   M    
Sbjct:   364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423

Query:   266 FLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGAS 325
               PN   Y+ LI G C + ++ +A+ V  +M E    P+V TY++LIDG  ++GN   A 
Sbjct:   424 LSPNTRTYNELIKGYCKS-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAY 482

Query:   326 QIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGL 385
             ++ + M   G  P+   YT M+  LC++    +A  L + +  +   PN V +   I G 
Sbjct:   483 RLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGY 542

Query:   386 CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNI 445
             C  G+VD A  +L++M    CLPN  T+N L+ GL    ++KEA  L  ++ K G+Q  +
Sbjct:   543 CKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTV 602

Query:   446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDR 505
              T   ++H + + G    A+    +ML  GTK DA T+   I  YC++G++ +A  ++ +
Sbjct:   603 STDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAK 662

Query:   506 IRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSL 561
             +R  G  +PD+ +Y+SL+ G  + G    AF  L++M + G  P+  T+  L++ L
Sbjct:   663 MRENGV-SPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHL 717

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)]

 Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
 Identities = 153/534 (28%), Positives = 282/534 (52%)

Query:    49 ALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK 108
             A+ +F  + +    PT   +N +  A+    ++ ++      M+ +G+E +++T  I++ 
Sbjct:    54 AIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMIN 113

Query:   109 ALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEA-----RELAMRFGS 163
               C+  ++  A+ +L      G  PD ++++T+V+  C  G+V EA     R + M+   
Sbjct:   114 CYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRP 173

Query:   164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGIL 223
              +   + LINGLC + ++ EA  L+  MV+ G  P+ +TY  +++ LC  GN   +L + 
Sbjct:   174 DLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLF 233

Query:   224 GQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSN 283
              +M  R    ++  ++ ++      G   +A  L+N M  +G   +VV YS+LI GLC++
Sbjct:   234 RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCND 293

Query:   284 GSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAY 343
             G  D+   +  +M   +  P+V T+SALID F K G LL A +++N MI+ G +P+ + Y
Sbjct:   294 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353

Query:   344 TCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ 403
               ++   C+ N  H+A+ + + M  + C P+ VT++  I   C   RVD  M+L  ++  
Sbjct:   354 NSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISS 413

Query:   404 YECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE 463
                +PN  TYN L+ G  +  ++  A EL  E+   G+  ++VTY  +L G+C  G + +
Sbjct:   414 KGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNK 473

Query:   464 AFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLL 523
             A ++  KM      L    +NIII+  C   KV++A  L   +   G   PD+++Y  ++
Sbjct:   474 ALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGV-KPDVVTYNVMI 532

Query:   524 WGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDI 577
              G+C  G + EA +  +KM  +G  P+  T+N+L+R+     G +  V +++++
Sbjct:   533 GGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEM 586

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)]

 Score = 730 (262.0 bits), Expect = 3.2e-72, P = 3.2e-72
 Identities = 162/572 (28%), Positives = 295/572 (51%)

Query:     1 MIEKLGEKCEIDGVQYLLQQMKVE-GVSCSEGVFISVINSYRRVGLAEQALKMFYRIREF 59
             +IEKLG   + + ++ +L  M+   G    EGV++  + +Y R G  ++A+ +F R+  +
Sbjct:    46 VIEKLGYYGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFY 105

Query:    60 GLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGA 119
               +PTV  YN I+  L+    F   + +Y  M+  G+ P+V+++ I +K+ CK +R   A
Sbjct:   106 DCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAA 165

Query:   120 YKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEAREL-AMRFGSGVSV----YNALING 174
              +LL  M ++GC  + V+Y T+V    +     E  EL      SGVS+    +N L+  
Sbjct:   166 LRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRV 225

Query:   175 LCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPN 234
             LCK+  ++E   LL +++ RG+ PN+ TY+  I  LC  G ++ ++ ++G +  +G  P+
Sbjct:   226 LCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPD 285

Query:   235 IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSY 294
             + ++ +L+ G     +  EA     +M+ EG  P+   Y+TLI G C  G +  A  +  
Sbjct:   286 VITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVG 345

Query:   295 QMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNN 354
                 N   P+  TY +LIDG    G    A  ++N  +  G  PNV+ Y  ++K L    
Sbjct:   346 DAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQG 405

Query:   355 MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYN 414
             M  +A  L  +M+ +   P   TFN  + GLC  G V  A  L+  M      P+I T+N
Sbjct:   406 MILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFN 465

Query:   415 ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE 474
              L+ G     +++ A E++  +   G+  ++ TYN++L+G+C+     +  +    M+ +
Sbjct:   466 ILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEK 525

Query:   475 GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQE 534
             G   +  TFNI++ + C+  K++ A+ LL+ ++     NPD +++ +L+ G C +G +  
Sbjct:   526 GCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSV-NPDAVTFGTLIDGFCKNGDLDG 584

Query:   535 AFIYLQKMLNE-GICPNFATWNVLVRSLFSNL 565
             A+   +KM     +  +  T+N+++ +    L
Sbjct:   585 AYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKL 616

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 163/549 (29%), Positives = 291/549 (53%)

Query:     1 MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
             ++  + +  + D V  L +QM+  G+S +   +  +IN + R      AL +  ++ + G
Sbjct:    87 LLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLG 146

Query:    61 LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
              +P +   N +L+     NR S    +   M   G +P+ FT+N L+  L ++NR   A 
Sbjct:   147 YEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAV 206

Query:   121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELA--MRFGS---GVSVYNALINGL 175
              L+  M  KGC PD V+Y  +V+ +CK G ++ A  L   M  G    GV +YN +I+ L
Sbjct:   207 ALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDAL 266

Query:   176 CKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNI 235
             C    + +A  L  EM ++GI PNV+TY+++I  LC+ G    +  +L  M  R  NPN+
Sbjct:   267 CNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNV 326

Query:   236 HSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQ 295
              +F++L+  ++  G+  EA  L++ MI+    P++  YS+LI+G C +  +DEA  +   
Sbjct:   327 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFEL 386

Query:   296 MEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM 355
             M    C PNV TY+ LI GF KA  +    +++  M   G   N V YT ++    Q   
Sbjct:   387 MISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARE 446

Query:   356 FHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNE 415
                A  + ++M  +   P+ +T++  + GLC  G+V+ A+ + + +++ +  P+I TYN 
Sbjct:   447 CDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNI 506

Query:   416 LLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG 475
             +++G+ +  +V++ ++L   +   G++ N+VTY T++ G CR G+  EA  L  +M  EG
Sbjct:   507 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEG 566

Query:   476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEA 535
                D+ T+N +I A+ + G    + +L+  +R    +  D  S   L+  + + G + ++
Sbjct:   567 PLPDSGTYNTLIRAHLRDGDKAASAELIREMRSC-RFVGDA-STIGLVTNMLHDGRLDKS 624

Query:   536 FIYLQKMLN 544
             F+   KML+
Sbjct:   625 FL---KMLS 630

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 159/542 (29%), Positives = 286/542 (52%)

Query:     1 MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG 60
             ++  + +  + D V  L +QM+  G+  +   +  +IN + R      AL +  ++ + G
Sbjct:    87 LLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLG 146

Query:    61 LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY 120
              +P +   + +L+      R S    +   M   G +PN  T+N L+  L  +N+   A 
Sbjct:   147 YEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAM 206

Query:   121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELA--MRFGS---GVSVYNALINGL 175
              L+  M  KGC PD V+Y  +V+ +CK G  + A  L   M  G    GV +YN +I+GL
Sbjct:   207 ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 266

Query:   176 CKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNI 235
             CK   +++A  L  EM  +GI PNV+TYS++IS LC+ G    +  +L  M  R  NP++
Sbjct:   267 CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326

Query:   236 HSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQ 295
              +F++L+  ++  G+  EA  L++ M++    P++V YS+LI+G C +  +DEA  +   
Sbjct:   327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386

Query:   296 MEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM 355
             M    C P+V TY+ LI GF K   +    +++  M   G   N V Y  +++ L Q   
Sbjct:   387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 446

Query:   356 FHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNE 415
                A  + ++M  +  PPN +T+NT + GLC  G+++ AM + + +++ +  P I TYN 
Sbjct:   447 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 506

Query:   416 LLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG 475
             +++G+ +  +V++ ++L   +   G++ ++V YNT++ G CR G   EA  L  +M  +G
Sbjct:   507 MIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDG 566

Query:   476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEA 535
             T  ++  +N +I A  + G    + +L+  +R  G +  D  S   L+  + + G + ++
Sbjct:   567 TLPNSGCYNTLIRARLRDGDREASAELIKEMRSCG-FAGDA-STIGLVTNMLHDGRLDKS 624

Query:   536 FI 537
             F+
Sbjct:   625 FL 626

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0000966 "RNA 5'-end processing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 156/522 (29%), Positives = 278/522 (53%)

Query:    47 EQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL 106
             + A+ +F  + +    P++  +N +L A+   N+F ++  +   M+   +  ++++YNIL
Sbjct:    62 DDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNIL 121

Query:   107 LKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELA-----MRF 161
             +   C+ +++  A  +L +M   G  PD V+ +++++  C   ++ EA  L      M +
Sbjct:   122 INCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEY 181

Query:   162 GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLG 221
                   +N LI+GL   +K  EA  L+  MV RG  P++ TY T+++ LC  G+++ +L 
Sbjct:   182 QPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALS 241

Query:   222 ILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLC 281
             +L +M       ++  +T+++         ++A +L+  M  +G  PNVV Y++LI  LC
Sbjct:   242 LLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLC 301

Query:   282 SNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVV 341
             + G   +A  +   M E    PNV T+SALID F K G L+ A ++++ MI     P++ 
Sbjct:   302 NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIF 361

Query:   342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQM 401
              Y+ ++   C ++   +A  + E M  ++C PN VT+NT IKG C   RV+  M+L  +M
Sbjct:   362 TYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREM 421

Query:   402 KQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV 461
              Q   + N  TYN L+ GL +      A ++  ++   G+  +I+TY+ +L G+C+ G +
Sbjct:   422 SQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 481

Query:   462 VEA---FQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIIS 518
              +A   F+ L K  +E    D  T+NI+I   CK GKV +   L   +   G   P++I 
Sbjct:   482 EKALVVFEYLQKSKMEP---DIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGV-KPNVII 537

Query:   519 YTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRS 560
             YT+++ G C  G  +EA    ++M  +G  PN  T+N L+R+
Sbjct:   538 YTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRA 579

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006397 "mRNA processing" evidence=IMP

TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 153/524 (29%), Positives = 281/524 (53%)

Query:    19 QQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAE 78
             ++M++ GVS +   +  +IN   R      AL +  ++ + G  P++   N +L+     
Sbjct:    89 EKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHG 148

Query:    79 NRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSY 138
             NR S    +   M   G +P+  T+  L+  L ++N+   A  L+  M  KGC PD V+Y
Sbjct:   149 NRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 208

Query:   139 TTIVSSICKLGQVEEARELAMRFGSG-----VSVYNALINGLCKEHKIEEAFWLLCEMVD 193
               +++ +CK G+ + A  L  +   G     V +Y+ +I+ LCK   +++A  L  EM +
Sbjct:   209 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDN 268

Query:   194 RGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHE 253
             +GI P+V TYS++IS LC+ G    +  +L  M  R  NPN+ +F SL+  +   G+  E
Sbjct:   269 KGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIE 328

Query:   254 ASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALID 313
             A  L++ MI+    PN+V Y++LI+G C +  +DEA  +   M    C P+V TY+ LI+
Sbjct:   329 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIN 388

Query:   314 GFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPP 373
             GF KA  ++   +++  M   G   N V YT ++    Q +    A  + ++M  +   P
Sbjct:   389 GFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHP 448

Query:   374 NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELV 433
             N +T+NT + GLC  G+++ AM + + +++ +  P+I TYN + +G+ +  +V++ ++L 
Sbjct:   449 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLF 508

Query:   434 TEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ 493
               +   G++ +++ YNT++ G C+ G+  EA+ L  KM  +G   D+ T+N +I A+ + 
Sbjct:   509 CSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRD 568

Query:   494 GKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFI 537
             G    + +L+  +R    +  D  +Y  L+  + + G + + F+
Sbjct:   569 GDKAASAELIKEMRSC-RFAGDASTY-GLVTDMLHDGRLDKGFL 610

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M302	PP270_ARATH	No assigned EC number	0.5748	0.9759	0.8603	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	581
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	8e-31
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-30
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-26
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-23
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-19
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-18
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-18
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-15
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-14
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-12
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-12
pfam12854	34	pfam12854, PPR_1, PPR repeat	8e-11
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-09
pfam12854	34	pfam12854, PPR_1, PPR repeat	6e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	4e-06
pfam01535	31	pfam01535, PPR, PPR repeat	8e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-05
pfam01535	31	pfam01535, PPR, PPR repeat	6e-05
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	6e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	2e-04
pfam01535	31	pfam01535, PPR, PPR repeat	3e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-04
pfam01535	31	pfam01535, PPR, PPR repeat	5e-04
pfam01535	31	pfam01535, PPR, PPR repeat	8e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.001

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  128 bits (322), Expect = 8e-31
 Identities = 88/401 (21%), Positives = 170/401 (42%), Gaps = 37/401 (9%)

Query: 97  EPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARE 156
            P + T+N+L+     +  +DGA ++L  +   G   D   YTT++S+  K G+V+    
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD---- 489

Query: 157 LAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNV 216
            AM                         F +  EMV+ G++ NV T+  +I      G V
Sbjct: 490 -AM-------------------------FEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523

Query: 217 ETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREG--FLPNVVAYS 274
             + G  G M  +   P+   F +L+      G    A D+   M  E     P+ +   
Sbjct: 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG 583

Query: 275 TLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISN 334
            L+    + G +D A  V   + E +       Y+  ++  ++ G+   A  I++ M   
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643

Query: 335 GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDW- 393
           G  P+ V ++ +V V        +A  +++    +     TV++++ + G C     +W 
Sbjct: 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-GAC-SNAKNWK 701

Query: 394 -AMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTIL 452
            A++L + +K  +  P ++T N L+  L   N++ +A E+++E+++ G+  N +TY+ +L
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761

Query: 453 HGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ 493
               R         LL +   +G K + +    I    C +
Sbjct: 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLR 801

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  126 bits (318), Expect = 2e-30
 Identities = 106/469 (22%), Positives = 190/469 (40%), Gaps = 60/469 (12%)

Query: 103 YNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKL-GQVEEARELAMRF 161
           YN LL+      R+     LL +M  +G       Y       CK    V+EA     RF
Sbjct: 377 YNRLLRD----GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEA----FRF 428

Query: 162 G-----SGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNV 216
                   +S +N L++       I+ A  +L  + + G+  +   Y+T+IS+    G V
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488

Query: 217 ETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTL 276
           +    +  +M   G   N+H+F +L+ G    G+  +A   +  M  +   P+ V ++ L
Sbjct: 489 DAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548

Query: 277 IHGLCSNGSMDEAVSVSYQMEENSCP--PNVTTYSALIDGFAKAGNLLGASQIWNRMISN 334
           I     +G++D A  V  +M+  + P  P+  T  AL+   A AG +  A +++  +   
Sbjct: 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608

Query: 335 GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWA 394
                   YT  V           + S                           G  D+A
Sbjct: 609 NIKGTPEVYTIAV----------NSCSQK-------------------------GDWDFA 633

Query: 395 MKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG 454
           + + D MK+    P+   ++ L+D       + +AFE++ +  K GI+L  V+Y++++  
Sbjct: 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693

Query: 455 VCRAGMVVEAFQLLGKMLIEGTKLDAI--TFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW 512
              A    +A +L     I+  KL     T N +I A C+  ++  A+++L  ++  G  
Sbjct: 694 CSNAKNWKKALELYED--IKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG-L 750

Query: 513 NPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSL 561
            P+ I+Y+ LL               L +   +GI PN     V+ R +
Sbjct: 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL----VMCRCI 795

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  113 bits (285), Expect = 3e-26
 Identities = 115/541 (21%), Positives = 222/541 (41%), Gaps = 57/541 (10%)

Query: 36  VINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDG 95
           ++  Y + G  ++AL +++R+   G++P V  +  +L         +    +++++ R G
Sbjct: 158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFG 217

Query: 96  MEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEAR 155
            E +V   N L+    K   V  A  +           D +     +S            
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVF----------DRMPRRDCIS------------ 255

Query: 156 ELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGN 215
                       +NA+I+G  +  +  E   L   M +  +DP+++T +++IS+   +G+
Sbjct: 256 ------------WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303

Query: 216 VETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYST 275
                 + G +   G   ++    SL++ YL  G   EA  +++RM  +    + V+++ 
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTA 359

Query: 276 LIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNG 335
           +I G   NG  D+A+     ME+++  P+  T ++++   A  G+L    ++       G
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419

Query: 336 CSPNVVAYTCMVKVLCQNNMFHQAHSLIEKM--AFENCP-PNTVTFNTFIKGLCGCGRVD 392
               VV    ++       M+ +    I+K    F N P  + +++ + I GL    R  
Sbjct: 420 LISYVVVANALI------EMYSKCKC-IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCF 472

Query: 393 WAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTIL 452
            A+    QM      PN  T    L    R+  +    E+   + + GI  +    N +L
Sbjct: 473 EALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALL 531

Query: 453 HGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW 512
               R G +  A+           + D +++NI++  Y   GK + A++L +R+   G  
Sbjct: 532 DLYVRCGRMNYAWNQF-----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV- 585

Query: 513 NPDIISYTSLLWGICNSGGMQEAFIYLQKMLNE-GICPNFATWNVLVRSLFSNLGHLGPV 571
           NPD +++ SLL     SG + +   Y   M  +  I PN   +  +V  L    G L   
Sbjct: 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV-DLLGRAGKLTEA 644

Query: 572 Y 572
           Y
Sbjct: 645 Y 645

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  104 bits (262), Expect = 2e-23
 Identities = 96/415 (23%), Positives = 168/415 (40%), Gaps = 74/415 (17%)

Query: 47  EQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL 106
           + AL++   ++E GLK   K+Y  ++       +   +  ++  M   G+E NV T+  L
Sbjct: 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513

Query: 107 LKALCKNNRVD---GAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGS 163
           +    +  +V    GAY +   M +K   PD V                           
Sbjct: 514 IDGCARAGQVAKAFGAYGI---MRSKNVKPDRV--------------------------- 543

Query: 164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDRG--IDPNVITYSTIISSLCDVGNVETSLG 221
              V+NALI+   +   ++ AF +L EM      IDP+ IT   ++ +  + G V+ +  
Sbjct: 544 ---VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600

Query: 222 ILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLC 281
           +  QM        IH +   +KG                       P V  Y+  ++   
Sbjct: 601 VY-QM--------IHEYN--IKGT----------------------PEV--YTIAVNSCS 625

Query: 282 SNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVV 341
             G  D A+S+   M++    P+   +SAL+D    AG+L  A +I       G     V
Sbjct: 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685

Query: 342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQM 401
           +Y+ ++        + +A  L E +      P   T N  I  LC   ++  A+++L +M
Sbjct: 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745

Query: 402 KQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVC 456
           K+    PN  TY+ LL    R +      +L+++ ++ GI+ N+V    I  G+C
Sbjct: 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 93.0 bits (231), Expect = 1e-19
 Identities = 49/199 (24%), Positives = 101/199 (50%), Gaps = 5/199 (2%)

Query: 42  RVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVF 101
             G  ++A +++  I E+ +K T ++Y   +++   +  +     IY +MK+ G++P+  
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650

Query: 102 TYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEAREL---- 157
            ++ L+        +D A+++L +   +G     VSY++++ +       ++A EL    
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710

Query: 158 -AMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNV 216
            +++    VS  NALI  LC+ +++ +A  +L EM   G+ PN ITYS ++ +     + 
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770

Query: 217 ETSLGILGQMFVRGCNPNI 235
           +  L +L Q    G  PN+
Sbjct: 771 DVGLDLLSQAKEDGIKPNL 789

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 89.5 bits (222), Expect = 1e-18
 Identities = 114/512 (22%), Positives = 198/512 (38%), Gaps = 114/512 (22%)

Query: 35  SVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDA--LLAENRFSMINPIYSNMK 92
           ++I+ Y   G   + L++F+ +RE  + P +     ++ A  LL + R      ++  + 
Sbjct: 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG--REMHGYVV 315

Query: 93  RDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVS--------- 143
           + G   +V   N L++          A K+   M  K    DAVS+T ++S         
Sbjct: 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPD 371

Query: 144 -------------------------SICK-LGQVE---EARELAMRFG--SGVSVYNALI 172
                                    S C  LG ++   +  ELA R G  S V V NALI
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431

Query: 173 NGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCN 232
               K   I++A  +   + ++    +VI++++II+ L        +L    QM +    
Sbjct: 432 EMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LK 486

Query: 233 PNIHSFTSLLK-----GYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMD 287
           PN  +  + L      G L+ G+   A  L   +  +GFLPN      L+      G M+
Sbjct: 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYVRCGRMN 541

Query: 288 EAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMV 347
            A +     + NS   +V +++ L+ G+   G    A +++NRM+ +G +P+ V      
Sbjct: 542 YAWN-----QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV------ 590

Query: 348 KVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGR---VDWAMKLLDQMK-Q 403
                                           TFI  LC C R   V   ++    M+ +
Sbjct: 591 --------------------------------TFISLLCACSRSGMVTQGLEYFHSMEEK 618

Query: 404 YECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE 463
           Y   PN+  Y  ++D L R  ++ EA+     I K  I  +   +  +L+  CR    VE
Sbjct: 619 YSITPNLKHYACVVDLLGRAGKLTEAYNF---INKMPITPDPAVWGALLNA-CRIHRHVE 674

Query: 464 AFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK 495
             +L  + + E        + ++   Y   GK
Sbjct: 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGK 706

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 87.6 bits (217), Expect = 5e-18
 Identities = 89/431 (20%), Positives = 180/431 (41%), Gaps = 40/431 (9%)

Query: 57  REFGLKPTVKIYNHILDALLAENRFSMINPIYSNMK-RDGMEPNVFTYNILLKALCKNNR 115
                K  V + + I + L+A  R      ++  ++          TY+ L++A      
Sbjct: 80  DTQIRKSGVSLCSQI-EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKS 138

Query: 116 VDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEAREL--AMRFGSGVSVYNALIN 173
           +     +   + + G  PD      ++    K G + +AR L   M   +  S +  +I 
Sbjct: 139 IRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLAS-WGTIIG 197

Query: 174 GLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVET---------SLGILG 224
           GL       EAF L  EM + G D    T+  ++ +   +G+              G++G
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257

Query: 225 QMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNG 284
             FV  C        +L+  Y   G   +A  +++ M  +      VA+++++ G   +G
Sbjct: 258 DTFV-SC--------ALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHG 304

Query: 285 SMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYT 344
             +EA+ + Y+M ++    +  T+S +I  F++   L  A Q    +I  G   ++VA T
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364

Query: 345 CMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY 404
            +V +  +      A ++ ++M  +    N +++N  I G    GR   A+++ ++M   
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAE 420

Query: 405 ECLPNITTYNELLD-----GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG 459
              PN  T+  +L      GL    +  E F+ ++E     I+   + Y  ++  + R G
Sbjct: 421 GVAPNHVTFLAVLSACRYSGL--SEQGWEIFQSMSENH--RIKPRAMHYACMIELLGREG 476

Query: 460 MVVEAFQLLGK 470
           ++ EA+ ++ +
Sbjct: 477 LLDEAYAMIRR 487

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 83.0 bits (205), Expect = 1e-16
 Identities = 88/436 (20%), Positives = 176/436 (40%), Gaps = 57/436 (13%)

Query: 49  ALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGM-EPNVFTYNILL 107
              +++ +   G +P   + N +L   L   +  M+  I +    D M E N+ ++  ++
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVL---LMHVKCGML--IDARRLFDEMPERNLASWGTII 196

Query: 108 KALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEAREL---AMRFGSG 164
             L        A+ L  EM   G   +  ++  ++ +   LG     ++L    ++ G  
Sbjct: 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256

Query: 165 VSVY---------------------------------NALINGLCKEHKIEEAFWLLCEM 191
              +                                 N+++ G       EEA  L  EM
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316

Query: 192 VDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRT 251
            D G+  +  T+S +I     +  +E +      +   G   +I + T+L+  Y   GR 
Sbjct: 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM 376

Query: 252 HEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSAL 311
            +A ++++RM R+    N+++++ LI G  ++G   +AV +  +M      PN  T+ A+
Sbjct: 377 EDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432

Query: 312 IDGFAKAGNLLGASQIWNRMISN-GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFEN 370
           +     +G      +I+  M  N    P  + Y CM+++L +  +  +A+++I +  F  
Sbjct: 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF-- 490

Query: 371 CPPNTVTFNTFIKGLCGCGRVDWAMKL--LDQMKQYECLP-NITTYNELLDGLLRVNRVK 427
                 T N +   L  C R+   ++L  L   K Y   P  +  Y  LL+      R  
Sbjct: 491 ----KPTVNMWAALLTAC-RIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQA 545

Query: 428 EAFELVTEIEKCGIQL 443
           EA ++V  +++ G+ +
Sbjct: 546 EAAKVVETLKRKGLSM 561

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 72.1 bits (178), Expect = 4e-16
 Identities = 19/50 (38%), Positives = 30/50 (60%)

Query: 98  PNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK 147
           P+V TYN L+   CK  +V+ A KL  EM  +G  P+  +Y+ ++  +CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 69.7 bits (172), Expect = 3e-15
 Identities = 27/48 (56%), Positives = 31/48 (64%)

Query: 165 VSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCD 212
           V  YN LI+G CK+ K+EEA  L  EM  RGI PNV TYS +I  LC 
Sbjct: 3   VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 68.6 bits (169), Expect = 6e-15
 Identities = 24/50 (48%), Positives = 33/50 (66%)

Query: 268 PNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK 317
           P+VV Y+TLI G C  G ++EA+ +  +M++    PNV TYS LIDG  K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 74.9 bits (184), Expect = 4e-14
 Identities = 73/327 (22%), Positives = 136/327 (41%), Gaps = 34/327 (10%)

Query: 254 ASDLWNRMIREGFLPNVVAYS--TLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSAL 311
              ++  +   GF P+    +   L+H  C  G + +A  +  +M E     N+ ++  +
Sbjct: 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKC--GMLIDARRLFDEMPER----NLASWGTI 195

Query: 312 IDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKV---LCQNNMFHQAHSLIEKMAF 368
           I G   AGN   A  ++  M  +G       +  M++    L       Q H  + K   
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG- 254

Query: 369 ENCPPNTVTFNTFIKGLCGCGRVDWAMK---LLDQMKQYECLPNITT--YNELLDGLLRV 423
                  V  +TF+     C  +D   K   + D    ++ +P  TT  +N +L G    
Sbjct: 255 -------VVGDTFV----SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH 303

Query: 424 NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITF 483
              +EA  L  E+   G+ ++  T++ ++    R  ++  A Q    ++  G  LD +  
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363

Query: 484 NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKML 543
             ++  Y K G++ +A  + DR+        ++IS+ +L+ G  N G   +A    ++M+
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMI 418

Query: 544 NEGICPNFATW-NVLVRSLFSNLGHLG 569
            EG+ PN  T+  VL    +S L   G
Sbjct: 419 AEGVAPNHVTFLAVLSACRYSGLSEQG 445

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 73.7 bits (181), Expect = 1e-13
 Identities = 88/449 (19%), Positives = 169/449 (37%), Gaps = 95/449 (21%)

Query: 169 NALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCD--------------VG 214
           N+ +  LC   ++E+A  LL  M +  +  +   Y  +   LC+                
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALF-RLCEWKRAVEEGSRVCSRAL 113

Query: 215 NVETSLGI-LGQ----MFVRGCN-------------PNIHSFTSLLKGYLLGGRTHEASD 256
           +   SLG+ LG     MFVR                 ++ S+  L+ GY   G   EA  
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173

Query: 257 LWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVS-------VSYQMEENSCPPNVTTYS 309
           L++RM+  G  P+V  +  ++   C  G  D A         V +  E      +V   +
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRT-CG-GIPDLARGREVHAHVVRFGFEL-----DVDVVN 226

Query: 310 ALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE 369
           ALI  + K G+++ A  +++RM    C    +++  M+    +N    +   L   M   
Sbjct: 227 ALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMREL 282

Query: 370 NCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEA 429
           +  P+ +T  + I      G      ++   + +     +++  N L+   L +    EA
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342

Query: 430 FELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITF------ 483
            ++ + +E      + V++  ++ G  + G+  +A +    M  +    D IT       
Sbjct: 343 EKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398

Query: 484 -----------------------------NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP 514
                                        N +I  Y K   ++ A+++   I        
Sbjct: 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-----EK 453

Query: 515 DIISYTSLLWGICNSGGMQEAFIYLQKML 543
           D+IS+TS++ G+  +    EA I+ ++ML
Sbjct: 454 DVISWTSIIAGLRLNNRCFEALIFFRQML 482

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 64.3 bits (158), Expect = 2e-13
 Identities = 23/48 (47%), Positives = 34/48 (70%)

Query: 373 PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL 420
           P+ VT+NT I G C  G+V+ A+KL ++MK+    PN+ TY+ L+DGL
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 63.6 bits (156), Expect = 3e-13
 Identities = 20/49 (40%), Positives = 31/49 (63%)

Query: 444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK 492
           ++VTYNT++ G C+ G V EA +L  +M   G K +  T++I+I   CK
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 63.2 bits (155), Expect = 5e-13
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 303 PNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ 352
           P+V TY+ LIDG+ K G +  A +++N M   G  PNV  Y+ ++  LC+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 63.2 bits (155), Expect = 5e-13
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 338 PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLC 386
           P+VV Y  ++   C+     +A  L  +M      PN  T++  I GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 62.8 bits (154), Expect = 7e-13
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 63  PTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCK 112
           P V  YN ++D    + +      +++ MK+ G++PNV+TY+IL+  LCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 61.3 bits (150), Expect = 2e-12
 Identities = 20/50 (40%), Positives = 36/50 (72%)

Query: 408 PNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR 457
           P++ TYN L+DG  +  +V+EA +L  E++K GI+ N+ TY+ ++ G+C+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 69.1 bits (169), Expect = 4e-12
 Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)

Query: 17  LLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALL 76
           +LQ  + +G+      + S++ +       ++AL+++  I+   L+PTV   N ++ AL 
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730

Query: 77  AENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAV 136
             N+      + S MKR G+ PN  TY+ILL A  + +  D    LL +    G  P+ V
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790

Query: 137 SYTTIVSSICK 147
               I   +C 
Sbjct: 791 MCRCIT-GLCL 800

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 60.9 bits (149), Expect = 4e-12
 Identities = 21/49 (42%), Positives = 30/49 (61%)

Query: 233 PNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLC 281
           P++ ++ +L+ GY   G+  EA  L+N M + G  PNV  YS LI GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 56.6 bits (138), Expect = 8e-11
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 370 NCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMK 402
              P+ VT+NT I GLC  GRVD A++LLD+M+
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 55.8 bits (136), Expect = 1e-10
 Identities = 17/33 (51%), Positives = 23/33 (69%)

Query: 94  DGMEPNVFTYNILLKALCKNNRVDGAYKLLVEM 126
            G++P+V TYN L+  LC+  RVD A +LL EM
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 56.3 bits (137), Expect = 2e-10
 Identities = 18/48 (37%), Positives = 31/48 (64%)

Query: 198 PNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGY 245
           P+V+TY+T+I   C  G VE +L +  +M  RG  PN+++++ L+ G 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 51.2 bits (124), Expect = 5e-09
 Identities = 17/32 (53%), Positives = 26/32 (81%)

Query: 440 GIQLNIVTYNTILHGVCRAGMVVEAFQLLGKM 471
           G++ ++VTYNT++ G+CRAG V EA +LL +M
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 51.3 bits (124), Expect = 9e-09
 Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)

Query: 479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN 528
           D +T+N +I  YCK+GKV  A++L + ++  G   P++ +Y+ L+ G+C 
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 48.5 bits (117), Expect = 6e-08
 Identities = 18/33 (54%), Positives = 23/33 (69%)

Query: 265 GFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQME 297
           G  P+VV Y+TLI GLC  G +DEAV +  +ME
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.6 bits (117), Expect = 7e-08
 Identities = 17/48 (35%), Positives = 29/48 (60%)

Query: 514 PDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSL 561
           PD+++Y +L+ G C  G ++EA     +M   GI PN  T+++L+  L
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 44.6 bits (107), Expect = 1e-06
 Identities = 13/33 (39%), Positives = 24/33 (72%)

Query: 194 RGIDPNVITYSTIISSLCDVGNVETSLGILGQM 226
           +G+ P+V+TY+T+I  LC  G V+ ++ +L +M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 44.6 bits (107), Expect = 1e-06
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 475 GTKLDAITFNIIIYAYCKQGKVNNAIQLLDR 505
           G K D +T+N +I   C+ G+V+ A++LLD 
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 101 FTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDA 135
            TYN L+  LCK  RV+ A +L  EM  +G  PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 6/151 (3%)

Query: 409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA-GMVVEAFQL 467
               Y +  + LLR  R+K+  +L+ ++EK G+      Y+      C+    V EAF+ 
Sbjct: 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRF 428

Query: 468 LGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGIC 527
               LI    L   TFN+++        ++ A+++L  ++  G    D   YT+L+    
Sbjct: 429 --AKLIRNPTLS--TFNMLMSVCASSQDIDGALRVLRLVQEAG-LKADCKLYTTLISTCA 483

Query: 528 NSGGMQEAFIYLQKMLNEGICPNFATWNVLV 558
            SG +   F    +M+N G+  N  T+  L+
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514

Length = 1060

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 43.1 bits (103), Expect = 4e-06
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 129 KGCAPDAVSYTTIVSSICKLGQVEEAREL 157
           KG  PD V+Y T++  +C+ G+V+EA EL
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVEL 29

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 307 TYSALIDGFAKAGNLLGASQIWNRMISNGCSPNV 340
           TY+ LIDG  KAG +  A +++  M   G  P+V
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.4 bits (101), Expect = 8e-06
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 166 SVYNALINGLCKEHKIEEAFWLLCEMVDRGI 196
             YN+LI+G CK  K+EEA  L  EM ++G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI 410
           VT+NT I GLC  GRV+ A++L  +MK+    P++
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.2 bits (98), Expect = 2e-05
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 168 YNALINGLCKEHKIEEAFWLLCEMV 192
           YN LI+GLC+  +++EA  LL EM 
Sbjct: 10  YNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.2 bits (98), Expect = 2e-05
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 301 CPPNVTTYSALIDGFAKAGNLLGASQIWNRM 331
             P+V TY+ LIDG  +AG +  A ++ + M
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 65/311 (20%), Positives = 122/311 (39%), Gaps = 53/311 (17%)

Query: 35  SVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRD 94
           S++  Y   G +E+AL ++Y +R+ G    V I                           
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRDSG----VSIDQ------------------------- 325

Query: 95  GMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEA 154
                 FT++I+++   +   ++ A +    +   G   D V+ T +V    K G++E+A
Sbjct: 326 ------FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379

Query: 155 RELAMRFG-SGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDV 213
           R +  R     +  +NALI G     +  +A  +   M+  G+ PN +T+  ++S+    
Sbjct: 380 RNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439

Query: 214 GNVETSLGILGQMF-VRGCNPNIHSFTSLLKGYLLG--GRTHEASDLWNRMIREG-FLPN 269
           G  E    I   M       P    +  +++  LLG  G   EA      MIR   F P 
Sbjct: 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIE--LLGREGLLDEAYA----MIRRAPFKPT 493

Query: 270 VVAYSTLIHGLCSNGSMDEAVSVS---YQMEENSCPPNVTTYSALIDGFAKAGNLLGASQ 326
           V  ++ L+     + +++     +   Y M     P  +  Y  L++ +  +G    A++
Sbjct: 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMG----PEKLNNYVVLLNLYNSSGRQAEAAK 549

Query: 327 IWNRMISNGCS 337
           +   +   G S
Sbjct: 550 VVETLKRKGLS 560

Length = 697

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 271 VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNV 305
           V Y+TLI GLC  G ++EA+ +  +M+E    P+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 167 VYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNV 200
            YN LI+GLCK  ++EEA  L  EM +RGI+P+V
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA 480
           VTYNT++ G+C+AG V EA +L  +M   G + D 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.7 bits (94), Expect = 6e-05
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 101 FTYNILLKALCKNNRVDGAYKLLVEMGNKGC 131
            TYN L+   CK  +++ A +L  EM  KG 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 39.9 bits (94), Expect = 6e-05
 Identities = 15/34 (44%), Positives = 17/34 (50%)

Query: 100 VFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAP 133
           + TYN LL AL K    D A  +L EM   G  P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.5 bits (91), Expect = 2e-04
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 406 CLPNITTYNELLDGLLRVNRVKEAFELVTEIE 437
             P++ TYN L+DGL R  RV EA EL+ E+E
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 236 HSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNV 270
            ++ +L+ G    GR  EA +L+  M   G  P+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 305 VTTYSALIDGFAKAGNLLGASQIWNRMISNGCSP 338
           + TY+AL+   AKAG+   A  +   M ++G  P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 307 TYSALIDGFAKAGNLLGASQIWNRMISNGC 336
           TY++LI G+ KAG L  A +++  M   G 
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 341 VAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNT 375
           V Y  ++  LC+     +A  L ++M      P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 13/30 (43%), Positives = 21/30 (70%)

Query: 446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEG 475
           VTYN+++ G C+AG + EA +L  +M  +G
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKG 30

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC 406
           VT+N+ I G C  G+++ A++L  +MK+   
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 201 ITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNI 235
           +TY+T+I  LC  G VE +L +  +M  RG  P++
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 165 VSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDP 198
           +  YNAL+  L K    + A  +L EM   G+ P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	581
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.98
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.96
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.95
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.94
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.91
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.91
KOG2076	895	consensus RNA polymerase III transcription factor	99.91
PRK14574	822	hmsH outer membrane protein; Provisional	99.9
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.9
PRK14574	822	hmsH outer membrane protein; Provisional	99.9
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.87
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.87
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.87
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.86
KOG2076	895	consensus RNA polymerase III transcription factor	99.85
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.84
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.84
KOG2003	840	consensus TPR repeat-containing protein [General f	99.83
KOG2003	840	consensus TPR repeat-containing protein [General f	99.83
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.75
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.75
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.74
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.73
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.72
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.72
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.72
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.72
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.72
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.71
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.71
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.71
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.7
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.7
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.69
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.68
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.68
KOG1126	638	consensus DNA-binding cell division cycle control	99.67
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.66
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.66
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.65
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.65
KOG1126	638	consensus DNA-binding cell division cycle control	99.64
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.63
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.62
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.61
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.57
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.54
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.54
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.54
KOG1129	478	consensus TPR repeat-containing protein [General f	99.52
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.51
PRK12370	553	invasion protein regulator; Provisional	99.51
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.5
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.49
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.49
PRK12370	553	invasion protein regulator; Provisional	99.48
KOG1129	478	consensus TPR repeat-containing protein [General f	99.47
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.46
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.43
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.41
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.4
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.4
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.39
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.37
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.36
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.36
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.33
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.32
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.32
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.32
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.32
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.31
PRK11189	296	lipoprotein NlpI; Provisional	99.31
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.3
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.28
PRK11189	296	lipoprotein NlpI; Provisional	99.27
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.26
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.22
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.19
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.19
PRK04841	903	transcriptional regulator MalT; Provisional	99.16
PF13041	50	PPR_2: PPR repeat family	99.16
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.15
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.15
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.14
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.14
PF13041	50	PPR_2: PPR repeat family	99.14
PRK04841	903	transcriptional regulator MalT; Provisional	99.13
KOG1125	579	consensus TPR repeat-containing protein [General f	99.08
KOG1125	579	consensus TPR repeat-containing protein [General f	99.06
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.02
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.97
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.93
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.93
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.93
PLN02789	320	farnesyltranstransferase	98.92
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.91
PLN02789	320	farnesyltranstransferase	98.89
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.88
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.88
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.83
PRK15359	144	type III secretion system chaperone protein SscB;	98.83
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.83
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.82
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.78
PRK15359	144	type III secretion system chaperone protein SscB;	98.77
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.76
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.75
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.74
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.74
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.72
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.7
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.69
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.69
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.67
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.66
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.63
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.6
PF12854	34	PPR_1: PPR repeat	98.52
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.49
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.49
PF12854	34	PPR_1: PPR repeat	98.46
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.41
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.4
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.38
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.3
KOG0553	304	consensus TPR repeat-containing protein [General f	98.3
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.29
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.26
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.24
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.22
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.21
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.2
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.18
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.15
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.1
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.09
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.09
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.07
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.07
KOG0553	304	consensus TPR repeat-containing protein [General f	98.06
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	98.05
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.04
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.04
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.02
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.02
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.01
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.0
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.96
PF12688	120	TPR_5: Tetratrico peptide repeat	97.96
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.95
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.93
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.92
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.92
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.92
PRK10803	263	tol-pal system protein YbgF; Provisional	97.92
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.9
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.9
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.89
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.89
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.88
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.88
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.88
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.86
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.86
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.84
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.83
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.77
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.76
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.76
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.73
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.71
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.71
PF12688	120	TPR_5: Tetratrico peptide repeat	97.69
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.69
PF13371	73	TPR_9: Tetratricopeptide repeat	97.61
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.59
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.58
PRK15331	165	chaperone protein SicA; Provisional	97.56
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.54
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.49
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.49
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.48
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.48
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.47
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.46
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.42
PF13371	73	TPR_9: Tetratricopeptide repeat	97.41
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.41
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.41
PRK10803	263	tol-pal system protein YbgF; Provisional	97.37
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.36
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.34
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.31
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.3
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.29
PRK15331	165	chaperone protein SicA; Provisional	97.24
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.21
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.19
PRK11906	458	transcriptional regulator; Provisional	97.17
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.14
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.14
KOG1258	577	consensus mRNA processing protein [RNA processing	97.13
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.13
PF13512	142	TPR_18: Tetratricopeptide repeat	97.11
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.1
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.09
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.06
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.06
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.03
PF13512	142	TPR_18: Tetratricopeptide repeat	97.03
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.02
KOG1258	577	consensus mRNA processing protein [RNA processing	96.99
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.98
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.94
KOG1585	308	consensus Protein required for fusion of vesicles	96.91
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.88
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.87
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.84
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.83
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.72
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.67
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.66
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.65
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.62
KOG4555	175	consensus TPR repeat-containing protein [Function	96.51
PRK11906	458	transcriptional regulator; Provisional	96.5
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.44
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.43
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.43
PF13428	44	TPR_14: Tetratricopeptide repeat	96.43
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.41
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.35
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.32
PF13428	44	TPR_14: Tetratricopeptide repeat	96.3
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.27
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.25
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.17
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.14
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.14
KOG4555	175	consensus TPR repeat-containing protein [Function	96.11
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.09
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.89
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.82
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.8
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.78
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.69
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.64
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.51
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.41
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.28
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	95.27
PF13431	34	TPR_17: Tetratricopeptide repeat	95.22
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.22
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.16
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.08
KOG1585	308	consensus Protein required for fusion of vesicles	95.06
PF13431	34	TPR_17: Tetratricopeptide repeat	94.63
COG1747	711	Uncharacterized N-terminal domain of the transcrip	94.6
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.55
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.53
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.5
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.45
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.3
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.27
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	94.25
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	94.23
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.23
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.23
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.14
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.05
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.04
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	94.03
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.87
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.81
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	93.78
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.65
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.6
KOG4234	271	consensus TPR repeat-containing protein [General f	93.42
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	93.42
KOG3941	406	consensus Intermediate in Toll signal transduction	93.32
PRK11619	644	lytic murein transglycosylase; Provisional	93.2
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.05
KOG4234	271	consensus TPR repeat-containing protein [General f	92.89
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.76
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	92.69
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.57
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.41
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	92.21
KOG1586	288	consensus Protein required for fusion of vesicles	92.1
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	92.04
KOG3941	406	consensus Intermediate in Toll signal transduction	92.03
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.8
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	91.76
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	91.62
COG3947	361	Response regulator containing CheY-like receiver a	91.49
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.48
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	91.47
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.39
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	91.12
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.93
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	90.87
KOG4648	536	consensus Uncharacterized conserved protein, conta	90.6
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.44
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	90.34
PRK09687	280	putative lyase; Provisional	90.34
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	90.17
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.13
PF13929	292	mRNA_stabil: mRNA stabilisation	90.1
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.99
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.82
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	89.75
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.67
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.66
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.49
KOG2471	696	consensus TPR repeat-containing protein [General f	89.3
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.27
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.23
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.21
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.97
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	88.84
KOG2471	696	consensus TPR repeat-containing protein [General f	88.73
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	88.56
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.32
KOG4648	536	consensus Uncharacterized conserved protein, conta	88.32
PRK11619	644	lytic murein transglycosylase; Provisional	88.31
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	88.27
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	87.89
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.74
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	87.53
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	87.24
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	87.18
KOG2062	929	consensus 26S proteasome regulatory complex, subun	87.0
COG3947	361	Response regulator containing CheY-like receiver a	86.85
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	86.24
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	86.09
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	85.98
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	85.76
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	85.72
PRK10941	269	hypothetical protein; Provisional	85.45
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	84.94
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	84.63
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	84.36
PRK09687	280	putative lyase; Provisional	84.26
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	83.94
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	83.66
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	83.56
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	82.64
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	82.58
KOG3364	149	consensus Membrane protein involved in organellar	82.41
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	82.4
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	82.11
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	81.02
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	80.33
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	80.28
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	80.23

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=8.5e-74  Score=587.20  Aligned_cols=557  Identities=20%  Similarity=0.309  Sum_probs=478.3

Q ss_pred             hhHhhhcCChhHHHHHHHHHHHcCCCCCHHHHH-----------------------------------HHHHHHHHcCCH
Q 008022            2 IEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFI-----------------------------------SVINSYRRVGLA   46 (581)
Q Consensus         2 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------------------------~l~~~~~~~g~~   46 (581)
                      +.+|.+.|++++|..+|+.+.+.|++|+..+|.                                   .++..|.+.|+.
T Consensus        58 i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~  137 (857)
T PLN03077         58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGEL  137 (857)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCCh
Confidence            567777788888888888777776666666554                                   445555666666


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 008022           47 EQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEM  126 (581)
Q Consensus        47 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  126 (581)
                      +.|.++|+.|..    ||..+|+.++.+|++.|++++|..+|++|...|+.||..+|+.++.+|...+++..+.+++..+
T Consensus       138 ~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~  213 (857)
T PLN03077        138 VHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV  213 (857)
T ss_pred             HHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHH
Confidence            666666666653    6667777777777777777777777777777777778788888887777777777777777777


Q ss_pred             hhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHH
Q 008022          127 GNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF-GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYST  205 (581)
Q Consensus       127 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  205 (581)
                      .+.|+.||..+++.++.+|++.|+++.|..+|+++ .++..+||.++.+|++.|++++|+++|++|...|+.||..||+.
T Consensus       214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~  293 (857)
T PLN03077        214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITS  293 (857)
T ss_pred             HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence            77788888888899999999999999999999999 67889999999999999999999999999999999999999999


Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC
Q 008022          206 IISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGS  285 (581)
Q Consensus       206 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  285 (581)
                      ++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.    .||..+|+.++.+|++.|+
T Consensus       294 ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~  369 (857)
T PLN03077        294 VISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGL  369 (857)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999999999986    3688999999999999999


Q ss_pred             hhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHH
Q 008022          286 MDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEK  365 (581)
Q Consensus       286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  365 (581)
                      +++|.++|++|.+.++.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|++.|++++|.++|++
T Consensus       370 ~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~  449 (857)
T PLN03077        370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN  449 (857)
T ss_pred             HHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH
Q 008022          366 MAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNI  445 (581)
Q Consensus       366 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  445 (581)
                      |..    ++..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|.+.|+.+.+.+++..+.+.|+.++.
T Consensus       450 m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~  524 (857)
T PLN03077        450 IPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG  524 (857)
T ss_pred             CCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence            863    5778999999999999999999999999976 57899999999999888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHH
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWG  525 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~  525 (581)
                      .+++.++..|++.|++++|.++|+.+     .+|..+|+.++.+|++.|+.++|.++|++|.+ .|+.||..+|+.++.+
T Consensus       525 ~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a  598 (857)
T PLN03077        525 FLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE-SGVNPDEVTFISLLCA  598 (857)
T ss_pred             eechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCcccHHHHHHH
Confidence            88888888888888888888777765     46777888888888888888888888888776 5677888888888888


Q ss_pred             HHccCCHHHHHHHHHHHH-HcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHH
Q 008022          526 ICNSGGMQEAFIYLQKML-NEGICPNFATWNVLVRSLFSNLGHLGPVYILDDI  577 (581)
Q Consensus       526 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  577 (581)
                      |.+.|++++|.++|++|. +.|+.|+..+|..++..+.+.|+.++|.+++++|
T Consensus       599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            888888888888888887 5677788888888888888888888888877765

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.6e-72  Score=576.17  Aligned_cols=531  Identities=21%  Similarity=0.282  Sum_probs=467.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH----------------------------------
Q 008022           26 VSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHI----------------------------------   71 (581)
Q Consensus        26 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----------------------------------   71 (581)
                      .+++...++.++..+.+.|++++|..+|+.|...|..|+..+|..+                                  
T Consensus        47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~  126 (857)
T PLN03077         47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA  126 (857)
T ss_pred             cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence            4578889999999999999999999999999988877777766444                                  


Q ss_pred             -HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCC
Q 008022           72 -LDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQ  150 (581)
Q Consensus        72 -~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  150 (581)
                       +..|++.|+.+.|.++|++|.    +||..+|+.+|.+|.+.|++++|+++|++|...|+.||..||+.++.++...++
T Consensus       127 li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~  202 (857)
T PLN03077        127 MLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD  202 (857)
T ss_pred             HHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence             455556666666666666665    467777777777777778888888888888777777888888888888777777


Q ss_pred             HHHHHHHHHHh-----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHH
Q 008022          151 VEEARELAMRF-----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQ  225 (581)
Q Consensus       151 ~~~a~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  225 (581)
                      +..+.+++..+     .++..++|.|+.+|++.|++++|..+|++|..    ||..+|+.+|.+|++.|++++|.++|.+
T Consensus       203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~  278 (857)
T PLN03077        203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT  278 (857)
T ss_pred             hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence            77777776665     56778888889999999999999999988853    5888899999999999999999999999


Q ss_pred             HHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH
Q 008022          226 MFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNV  305 (581)
Q Consensus       226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  305 (581)
                      |.+.|+.||..+|+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|..    ||.
T Consensus       279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~  354 (857)
T PLN03077        279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA  354 (857)
T ss_pred             HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCe
Confidence            9988999999999999999999999999999999999989999999999999999999999999999988863    578


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHh
Q 008022          306 TTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGL  385 (581)
Q Consensus       306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  385 (581)
                      .+|+.++.+|.+.|++++|.++|++|...|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.++..+++.++.+|
T Consensus       355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y  434 (857)
T PLN03077        355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY  434 (857)
T ss_pred             eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            88999999999999999999999999888999999999999999999999999999999999999889999999999999


Q ss_pred             hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHH
Q 008022          386 CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAF  465 (581)
Q Consensus       386 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  465 (581)
                      ++.|++++|.++|++|.+    +|..+|+.++.+|.+.|+.++|+.+|++|.. +++||..+|+.++.+|++.|+.+.+.
T Consensus       435 ~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~  509 (857)
T PLN03077        435 SKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGK  509 (857)
T ss_pred             HHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhH
Confidence            999999999999998865    6788999999999999999999999999986 48999999999999999999999999


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          466 QLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      +++..+.+.|+.++..+++.++.+|++.|++++|.++|+.+      .||..+|+.++.+|.+.|+.++|+++|++|.+.
T Consensus       510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~  583 (857)
T PLN03077        510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES  583 (857)
T ss_pred             HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999886      389999999999999999999999999999999


Q ss_pred             CCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          546 GICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       546 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      |+.||..+|..++.+|.+.|..++|.++++.|.+
T Consensus       584 g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~  617 (857)
T PLN03077        584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE  617 (857)
T ss_pred             CCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999874

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5.6e-69  Score=539.32  Aligned_cols=519  Identities=20%  Similarity=0.301  Sum_probs=466.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHH
Q 008022           27 SCSEGVFISVINSYRRVGLAEQALKMFYRIREFGL-KPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNI  105 (581)
Q Consensus        27 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  105 (581)
                      .++...+..++..+.+.|++++|+++|++|...++ .++...+..++..|.+.|..+.|..+|+.|.    .|+..+|+.
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~  442 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNM  442 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHH
Confidence            35777888888888899999999999999998775 3566677788889999999999999998887    388999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-----CCCcchHHHHHHHHHhcCC
Q 008022          106 LLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF-----GSGVSVYNALINGLCKEHK  180 (581)
Q Consensus       106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~l~~~~~~~~~  180 (581)
                      ++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+++     .++..+|+.+|.+|++.|+
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999999999999999999999999999999988     5788899999999999999


Q ss_pred             hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHH--cCCCCCcccHHHHHHHHHccCCHHHHHHHH
Q 008022          181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFV--RGCNPNIHSFTSLLKGYLLGGRTHEASDLW  258 (581)
Q Consensus       181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  258 (581)
                      +++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.++|
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999976  578899999999999999999999999999


Q ss_pred             HHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 008022          259 NRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSP  338 (581)
Q Consensus       259 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  338 (581)
                      +.|.+.|+.|+..+|+.++.+|++.|++++|.++|.+|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus       603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p  682 (1060)
T PLN03218        603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL  682 (1060)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022          339 NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLD  418 (581)
Q Consensus       339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  418 (581)
                      |..+|+.++.+|++.|++++|..+|++|...++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus       683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV  762 (1060)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999888899999999999999999999999999999999899999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHCC
Q 008022          419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR----A-------------------GMVVEAFQLLGKMLIEG  475 (581)
Q Consensus       419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~  475 (581)
                      +|.+.|++++|.+++.+|.+.|+.||..+|+.++..|.+    .                   +..+.|..+|++|.+.|
T Consensus       763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G  842 (1060)
T PLN03218        763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG  842 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999998865432    1                   12467999999999999


Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022          476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA  552 (581)
Q Consensus       476 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  552 (581)
                      +.||..+|+.++.++...+..+.+..+++.+.. .+..|+..+|+.++.++.+.  .++|..++++|...|+.|+..
T Consensus       843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             CCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence            999999999999888889999999999988876 45678899999999998432  368999999999999999874

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=3.3e-68  Score=533.71  Aligned_cols=509  Identities=18%  Similarity=0.270  Sum_probs=482.4

Q ss_pred             hhHhhhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008022            2 IEKLGEKCEIDGVQYLLQQMKVEGV-SCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR   80 (581)
Q Consensus         2 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (581)
                      +..|.+.|++++|.++|+.|.+.|+ +++...+..++..|.+.|..++|..+|..|..    |+..+|+.++.+|++.|+
T Consensus       377 y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~  452 (1060)
T PLN03218        377 YNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQD  452 (1060)
T ss_pred             HHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcC
Confidence            4567888999999999999999885 45777788899999999999999999998875    999999999999999999


Q ss_pred             cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHH
Q 008022           81 FSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMR  160 (581)
Q Consensus        81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  160 (581)
                      ++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.
T Consensus       453 ~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~  532 (1060)
T PLN03218        453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI  532 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h-----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 008022          161 F-----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVD--RGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNP  233 (581)
Q Consensus       161 ~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  233 (581)
                      +     .|+..+|+.++.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|
T Consensus       533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p  612 (1060)
T PLN03218        533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG  612 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            8     68899999999999999999999999999986  5789999999999999999999999999999999999999


Q ss_pred             CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHH
Q 008022          234 NIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALID  313 (581)
Q Consensus       234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  313 (581)
                      +..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|++|+..+|+.++.
T Consensus       613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~  692 (1060)
T PLN03218        613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG  692 (1060)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHH
Q 008022          314 GFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDW  393 (581)
Q Consensus       314 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  393 (581)
                      +|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|+++.
T Consensus       693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~  772 (1060)
T PLN03218        693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV  772 (1060)
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCCChhhHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHcCCcccHHHHHH
Q 008022          394 AMKLLDQMKQYECLPNITTYNELLDGLLR----V-------------------NRVKEAFELVTEIEKCGIQLNIVTYNT  450 (581)
Q Consensus       394 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~  450 (581)
                      |.+++..|.+.|+.||..+|+.++..|.+    .                   +..++|..+|++|.+.|+.||..+|+.
T Consensus       773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~  852 (1060)
T PLN03218        773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ  852 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence            99999999999999999999999865432    1                   124679999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH
Q 008022          451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDII  517 (581)
Q Consensus       451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~  517 (581)
                      ++.++++.+....+..+++.+...+..|+..+|+.++.++.+.  .++|..+++.|.. .|+.|+..
T Consensus       853 vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~-~Gi~p~~~  916 (1060)
T PLN03218        853 VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS-LGVVPSVS  916 (1060)
T ss_pred             HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH-cCCCCCcc
Confidence            9998889999999999999998888899999999999988432  4689999999999 67888764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=7.2e-63  Score=494.41  Aligned_cols=473  Identities=19%  Similarity=0.289  Sum_probs=452.5

Q ss_pred             CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHH
Q 008022           63 PTVKIYNHILDALLAENRFSMINPIYSNMKRDG-MEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTI  141 (581)
Q Consensus        63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  141 (581)
                      .+...|+.++..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+++.+
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L  164 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV  164 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            345589999999999999999999999998764 6799999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCCHHHHHHHHHHh-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHH
Q 008022          142 VSSICKLGQVEEARELAMRF-GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSL  220 (581)
Q Consensus       142 ~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  220 (581)
                      +.+|++.|+++.|.++|+++ .++..+||.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+++..|..+.+.
T Consensus       165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~  244 (697)
T PLN03081        165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ  244 (697)
T ss_pred             HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence            99999999999999999999 68999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 008022          221 GILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENS  300 (581)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  300 (581)
                      +++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|..    +|..+|+.++.+|++.|+.++|.++|++|.+.|
T Consensus       245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g  320 (697)
T PLN03081        245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG  320 (697)
T ss_pred             HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999864    589999999999999999999999999999999


Q ss_pred             CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHH
Q 008022          301 CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNT  380 (581)
Q Consensus       301 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  380 (581)
                      +.||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+++.++.+|++.|++++|..+|++|.    .+|..+|+.
T Consensus       321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~  396 (697)
T PLN03081        321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNA  396 (697)
T ss_pred             CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999996    468899999


Q ss_pred             HHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCcccHHHHHHHHHHHHhcC
Q 008022          381 FIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEK-CGIQLNIVTYNTILHGVCRAG  459 (581)
Q Consensus       381 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~  459 (581)
                      ++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++..|++.|
T Consensus       397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G  476 (697)
T PLN03081        397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG  476 (697)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999986 589999999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHH
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIY  538 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~  538 (581)
                      ++++|.++++++   +..|+..+|+.++.+|...|+++.|..+++++.+   +.| +..+|..++..|.+.|++++|.++
T Consensus       477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~---~~p~~~~~y~~L~~~y~~~G~~~~A~~v  550 (697)
T PLN03081        477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG---MGPEKLNNYVVLLNLYNSSGRQAEAAKV  550 (697)
T ss_pred             CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC---CCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence            999999998876   4689999999999999999999999999999987   567 567999999999999999999999


Q ss_pred             HHHHHHcCCCC
Q 008022          539 LQKMLNEGICP  549 (581)
Q Consensus       539 ~~~~~~~~~~~  549 (581)
                      +++|.+.|+.+
T Consensus       551 ~~~m~~~g~~k  561 (697)
T PLN03081        551 VETLKRKGLSM  561 (697)
T ss_pred             HHHHHHcCCcc
Confidence            99999998753

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.6e-61  Score=483.20  Aligned_cols=507  Identities=17%  Similarity=0.257  Sum_probs=462.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHH
Q 008022           29 SEGVFISVINSYRRVGLAEQALKMFYRIREFG-LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILL  107 (581)
Q Consensus        29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  107 (581)
                      +...|..++..+.+.|++++|+++|++|...+ ..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++
T Consensus        86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li  165 (697)
T PLN03081         86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL  165 (697)
T ss_pred             CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            44578999999999999999999999998754 67999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-----CCCcchHHHHHHHHHhcCChh
Q 008022          108 KALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF-----GSGVSVYNALINGLCKEHKIE  182 (581)
Q Consensus       108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~  182 (581)
                      ..|++.|+++.|.++|++|.+    ||..+|+.++.+|++.|++++|.++|+++     .++..+|+.++.++...|..+
T Consensus       166 ~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~  241 (697)
T PLN03081        166 LMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR  241 (697)
T ss_pred             HHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence            999999999999999999974    69999999999999999999999999998     678899999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022          183 EAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMI  262 (581)
Q Consensus       183 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  262 (581)
                      .+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.    .+|..+|+.++.+|++.|++++|.++|++|.
T Consensus       242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~  317 (697)
T PLN03081        242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMR  317 (697)
T ss_pred             HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999986    4689999999999999999999999999999


Q ss_pred             hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 008022          263 REGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVA  342 (581)
Q Consensus       263 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  342 (581)
                      +.|+.||..+|+.++.+|++.|++++|.+++..|.+.|++|+..+++.++.+|++.|++++|.++|+.|.+    ||..+
T Consensus       318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t  393 (697)
T PLN03081        318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS  393 (697)
T ss_pred             HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999864    79999


Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhh-CCCCCChhhHHHHHHHHH
Q 008022          343 YTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ-YECLPNITTYNELLDGLL  421 (581)
Q Consensus       343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~  421 (581)
                      |+.++.+|++.|+.++|.++|++|...|+.||..+|+.++.+|++.|.+++|.++|+.|.+ .++.|+..+|+.++.+|.
T Consensus       394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~  473 (697)
T PLN03081        394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG  473 (697)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999975 689999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 008022          422 RVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQ  501 (581)
Q Consensus       422 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  501 (581)
                      +.|++++|.+++++|   ++.|+..+|+.++.+|...|+++.|..+++++...+ +.+..+|..+++.|++.|++++|.+
T Consensus       474 r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~  549 (697)
T PLN03081        474 REGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAK  549 (697)
T ss_pred             hcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHH
Confidence            999999999998876   478999999999999999999999999999997653 3357789999999999999999999


Q ss_pred             HHHHHhcCCCCCC-CHHhHHHHH---HHHH----c----cCCHHHHHHHHHHHHHcCCCCCHH
Q 008022          502 LLDRIRGGGEWNP-DIISYTSLL---WGIC----N----SGGMQEAFIYLQKMLNEGICPNFA  552 (581)
Q Consensus       502 ~~~~~~~~~~~~p-~~~~~~~l~---~~~~----~----~g~~~~A~~~~~~~~~~~~~~~~~  552 (581)
                      +++.|.+.+ +.+ ...+|..+.   ..+.    .    ..-++...++..+|.+.|..|+..
T Consensus       550 v~~~m~~~g-~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~  611 (697)
T PLN03081        550 VVETLKRKG-LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN  611 (697)
T ss_pred             HHHHHHHcC-CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            999999844 433 333332211   0000    0    112345567788888889888753

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.9e-39  Score=343.64  Aligned_cols=556  Identities=14%  Similarity=0.075  Sum_probs=404.2

Q ss_pred             hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 008022            5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMI   84 (581)
Q Consensus         5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   84 (581)
                      +.+.|++++|...++.+...++ .+...+..+...+...|++++|.+.|+++....+ .+...+..+...+...|++++|
T Consensus       339 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A  416 (899)
T TIGR02917       339 QLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEA  416 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHH
Confidence            3344444555554444444322 2444445555555555555555555555544332 3344444445555555555555


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh---
Q 008022           85 NPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF---  161 (581)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---  161 (581)
                      ...++.+.+.. +........++..+.+.|++++|.++++.+... .++++.++..+...+...|++++|.+.+++.   
T Consensus       417 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  494 (899)
T TIGR02917       417 IADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI  494 (899)
T ss_pred             HHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence            55555554443 222233444455555666666666666666554 2335566777777777777777777777766   


Q ss_pred             -CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHH
Q 008022          162 -GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS  240 (581)
Q Consensus       162 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  240 (581)
                       |.+...+..++..+...|++++|...++.+...+ +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..
T Consensus       495 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  572 (899)
T TIGR02917       495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALA  572 (899)
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHH
Confidence             5556666677777777777777777777777653 2355666777777777788888888887776654 345566677


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 008022          241 LLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGN  320 (581)
Q Consensus       241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  320 (581)
                      ++..+...|++++|..+++.+.+.. +.+...|..+..++...|++++|...++.+.+.. +.++..+..+...+...|+
T Consensus       573 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  650 (899)
T TIGR02917       573 LAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKN  650 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence            7778888888888888888877653 3466778888888888888888888888887653 4466777788888888888


Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHH
Q 008022          321 LLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQ  400 (581)
Q Consensus       321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  400 (581)
                      +++|...++++.+..+ .+..++..++..+...|++++|..+++.+.... +.+...+..+...+...|++++|.+.|+.
T Consensus       651 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  728 (899)
T TIGR02917       651 YAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRK  728 (899)
T ss_pred             HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8888888888877542 356677888888888888888888888887765 56777788888888899999999999998


Q ss_pred             HhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022          401 MKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA  480 (581)
Q Consensus       401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  480 (581)
                      +...+  |+..++..+..++...|++++|.+.++.+.+.. +.+...+..+...|...|++++|.++|+++.... +++.
T Consensus       729 ~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~  804 (899)
T TIGR02917       729 ALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNA  804 (899)
T ss_pred             HHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCH
Confidence            87765  555677778888889999999999999988764 6678888888999999999999999999999875 5678


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVR  559 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  559 (581)
                      .+++.++..+...|+ .+|+..++++..   ..| ++..+..++..+...|++++|.++++++++.+ +.+..++..++.
T Consensus       805 ~~~~~l~~~~~~~~~-~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~  879 (899)
T TIGR02917       805 VVLNNLAWLYLELKD-PRALEYAEKALK---LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLAL  879 (899)
T ss_pred             HHHHHHHHHHHhcCc-HHHHHHHHHHHh---hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHH
Confidence            889999999999999 889999999988   345 56678889999999999999999999999864 337888889999


Q ss_pred             HHHhccCCCChHHHHHHHhh
Q 008022          560 SLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       560 ~~~~~g~~~~a~~~~~~~~~  579 (581)
                      ++.+.|+.++|.++++++++
T Consensus       880 ~~~~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       880 ALLATGRKAEARKELDKLLN  899 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHhC
Confidence            99999999999999999874

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=7.9e-38  Score=331.33  Aligned_cols=558  Identities=14%  Similarity=0.072  Sum_probs=417.3

Q ss_pred             hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 008022            5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMI   84 (581)
Q Consensus         5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   84 (581)
                      +...|++++|...++.+.+..+ .+...+..++..+...|++++|...++.+....+ .+...+..+...+.+.|++++|
T Consensus       305 ~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A  382 (899)
T TIGR02917       305 EYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKA  382 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence            4455666666666666665533 2455566666666667777777777666665443 4556666666677777777777


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh---
Q 008022           85 NPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF---  161 (581)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---  161 (581)
                      ..+|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+.. .......++..+.+.|++++|.++++++   
T Consensus       383 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  460 (899)
T TIGR02917       383 AEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK  460 (899)
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            77777766554 345555666666666777777777777776655322 2334455666777777777777777776   


Q ss_pred             -CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHH
Q 008022          162 -GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS  240 (581)
Q Consensus       162 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  240 (581)
                       |.+..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+...+ +.+..++..
T Consensus       461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~  538 (899)
T TIGR02917       461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILA  538 (899)
T ss_pred             CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence             5566777788888888888888888888877653 2245556667777788888888888888887664 345667777


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 008022          241 LLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGN  320 (581)
Q Consensus       241 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  320 (581)
                      +...+...|+.++|...++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..+..++...|+
T Consensus       539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  616 (899)
T TIGR02917       539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD  616 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence            7888888888888888888877664 2355667777888888888888888888887653 5577788888888888888


Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHH
Q 008022          321 LLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQ  400 (581)
Q Consensus       321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  400 (581)
                      +++|...++.+.+..+ .+...+..+..++...|++++|...++++.... |.+...+..++..+...|++++|..+++.
T Consensus       617 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  694 (899)
T TIGR02917       617 LNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS  694 (899)
T ss_pred             HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8888888888877642 356677778888888888888888888887764 56677888888888888899999988888


Q ss_pred             HhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022          401 MKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA  480 (581)
Q Consensus       401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  480 (581)
                      +.+.. +++...+..+...+...|++++|.+.++.+...+  |+..++..+..++.+.|++++|.+.++++.+.. +.+.
T Consensus       695 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~  770 (899)
T TIGR02917       695 LQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDA  770 (899)
T ss_pred             HHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence            87765 4566677788888888999999999999888763  455677778888889999999999999988865 5578


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRS  560 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  560 (581)
                      ..+..++..|...|++++|.+.|+++.+..  ++++.++..+++.+...|+ .+|+.+++++.+. .+.+...+..+...
T Consensus       771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~  846 (899)
T TIGR02917       771 VLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWL  846 (899)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHH
Confidence            888889999999999999999999998732  2367788899999999999 7899999999874 23345667788888


Q ss_pred             HHhccCCCChHHHHHHHhhc
Q 008022          561 LFSNLGHLGPVYILDDIMAN  580 (581)
Q Consensus       561 ~~~~g~~~~a~~~~~~~~~~  580 (581)
                      +...|++++|.+.++++++.
T Consensus       847 ~~~~g~~~~A~~~~~~a~~~  866 (899)
T TIGR02917       847 LVEKGEADRALPLLRKAVNI  866 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHhh
Confidence            89999999999999988763

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=8.7e-30  Score=268.48  Aligned_cols=557  Identities=13%  Similarity=0.050  Sum_probs=334.0

Q ss_pred             hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH----------------
Q 008022            5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIY----------------   68 (581)
Q Consensus         5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------   68 (581)
                      ...+++.+.|.+.++++....+. ++.++..+++.+.+.|+.++|.+.++++.+..+ .+....                
T Consensus        38 ~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~~~~~~~~  115 (1157)
T PRK11447         38 GEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLSTPEGRQA  115 (1157)
T ss_pred             HHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhcCCchhhH
Confidence            44566677777777776665443 666666677777777777777777777766543 222221                


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHc
Q 008022           69 NHILDALLAENRFSMINPIYSNMKRDGMEPNVFT-YNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK  147 (581)
Q Consensus        69 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  147 (581)
                      ....+.+...|++++|.+.|+.+.+.+ +|+... ...........|+.++|++.++++.+.. +.+...+..+...+..
T Consensus       116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~  193 (1157)
T PRK11447        116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS  193 (1157)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence            222335566677777777777766543 333221 1111111223466667777777666652 2244455566666666


Q ss_pred             cCCHHHHHHHHHHhCCCc---------------------c---hH----------------------------------H
Q 008022          148 LGQVEEARELAMRFGSGV---------------------S---VY----------------------------------N  169 (581)
Q Consensus       148 ~g~~~~a~~~~~~~~~~~---------------------~---~~----------------------------------~  169 (581)
                      .|+.++|++.++++....                     .   .+                                  .
T Consensus       194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~  273 (1157)
T PRK11447        194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR  273 (1157)
T ss_pred             cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence            677666666666540000                     0   00                                  0


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-cccH----------
Q 008022          170 ALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPN-IHSF----------  238 (581)
Q Consensus       170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~----------  238 (581)
                      .....+...|++++|+..|++..+... .+...+..+..++.+.|++++|...|++..+...... ...+          
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence            112334456666666666666665522 2455566666666666777777766666665421111 0111          


Q ss_pred             --HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHH----
Q 008022          239 --TSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALI----  312 (581)
Q Consensus       239 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----  312 (581)
                        ......+.+.|++++|+..|+++.+... .+...+..+...+...|++++|.+.|+++.+.. +.+...+..+.    
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR  430 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence              1113345566666667666666666532 234455556666666667777766666666542 22333333332    


Q ss_pred             --------------------------------------HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 008022          313 --------------------------------------DGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNN  354 (581)
Q Consensus       313 --------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  354 (581)
                                                            ..+...|++++|+..+++..+..+. +...+..+...+.+.|
T Consensus       431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G  509 (1157)
T PRK11447        431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAG  509 (1157)
T ss_pred             hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence                                                  3334455556666666555554322 3344455555566666


Q ss_pred             ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChh---------hHHHHHHHHHhcCC
Q 008022          355 MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNIT---------TYNELLDGLLRVNR  425 (581)
Q Consensus       355 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~  425 (581)
                      ++++|...++++.... |.++..+..+...+...++.++|...++.+......++..         .+..+...+...|+
T Consensus       510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence            6666666666655432 3334444444444455556666666555543221111111         11233455666777


Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008022          426 VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDR  505 (581)
Q Consensus       426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  505 (581)
                      .++|.++++.     .+.+...+..+...+.+.|++++|++.|++++... +.+...+..++.+|...|++++|++.++.
T Consensus       589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~  662 (1157)
T PRK11447        589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAK  662 (1157)
T ss_pred             HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            7777777661     25566677788889999999999999999999875 55788899999999999999999999999


Q ss_pred             HhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CC---CHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          506 IRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGI--CP---NFATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       506 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      +.+   ..| +...+..++.++...|++++|.+++++++...-  +|   +...+..+...+...|+.++|++.+++.+.
T Consensus       663 ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        663 LPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             Hhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            887   345 556677888899999999999999999986421  11   224566677888899999999999998874

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=7.5e-28  Score=253.90  Aligned_cols=531  Identities=12%  Similarity=0.044  Sum_probs=364.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhH-------
Q 008022           31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTY-------  103 (581)
Q Consensus        31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------  103 (581)
                      ..+...++.....++.+.|.+.++++....+ .++..+..++..+.+.|+.++|.+.++++.+.. +.+....       
T Consensus        29 ~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~  106 (1157)
T PRK11447         29 QQLLEQVRLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTML  106 (1157)
T ss_pred             HHHHHHHHHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHH
Confidence            4466677888899999999999999998765 578899999999999999999999999999875 3333332       


Q ss_pred             ---------HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcc-hHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHH
Q 008022          104 ---------NILLKALCKNNRVDGAYKLLVEMGNKGCAPDAV-SYTTIVSSICKLGQVEEARELAMRF----GSGVSVYN  169 (581)
Q Consensus       104 ---------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~  169 (581)
                               ......+...|++++|.+.|+.+.+.+ +|+.. ....+.......|+.++|++.++++    |.+...+.
T Consensus       107 ~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~  185 (1157)
T PRK11447        107 LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRN  185 (1157)
T ss_pred             hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHH
Confidence                     233446788999999999999998763 22322 1112222233469999999999998    77788899


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCC------------------C--------------CCcccH--------------
Q 008022          170 ALINGLCKEHKIEEAFWLLCEMVDRGI------------------D--------------PNVITY--------------  203 (581)
Q Consensus       170 ~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~--------------~~~~~~--------------  203 (581)
                      .+...+...|+.++|+..++++.....                  .              |+....              
T Consensus       186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~  265 (1157)
T PRK11447        186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL  265 (1157)
T ss_pred             HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence            999999999999999999998754311                  0              110000              


Q ss_pred             -------HHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHhH--
Q 008022          204 -------STIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPN-VVAY--  273 (581)
Q Consensus       204 -------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~--  273 (581)
                             ......+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+...... ...+  
T Consensus       266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~  344 (1157)
T PRK11447        266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES  344 (1157)
T ss_pred             cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence                   011334566788999999999888764 33677788888889999999999999998887643221 1111  


Q ss_pred             ----------HHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 008022          274 ----------STLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAY  343 (581)
Q Consensus       274 ----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  343 (581)
                                ......+.+.|++++|...++++.... |.+...+..+...+...|++++|++.|+++.+..+. +...+
T Consensus       345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~  422 (1157)
T PRK11447        345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAV  422 (1157)
T ss_pred             HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence                      122345678899999999999988764 456677778888899999999999999988876432 33344


Q ss_pred             HHHHHHH------------------------------------------HccCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 008022          344 TCMVKVL------------------------------------------CQNNMFHQAHSLIEKMAFENCPPNTVTFNTF  381 (581)
Q Consensus       344 ~~l~~~~------------------------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  381 (581)
                      ..+...+                                          ...|++++|...+++..... |.++..+..+
T Consensus       423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~L  501 (1157)
T PRK11447        423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRL  501 (1157)
T ss_pred             HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            4444333                                          23344444444444444432 3334444444


Q ss_pred             HHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHH---------HHHHHH
Q 008022          382 IKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIV---------TYNTIL  452 (581)
Q Consensus       382 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~  452 (581)
                      ...|...|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++..         .+....
T Consensus       502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a  580 (1157)
T PRK11447        502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA  580 (1157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence            444555555555555555444322 1122222222233334444555544444432211111110         112234


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCC
Q 008022          453 HGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGG  531 (581)
Q Consensus       453 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~  531 (581)
                      ..+...|++++|.++++.     .+.+...+..++..+.+.|++++|++.++++.+   ..| +...+..++..|...|+
T Consensus       581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~  652 (1157)
T PRK11447        581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGD  652 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCC
Confidence            456667777777777651     245667788899999999999999999999998   456 67789999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          532 MQEAFIYLQKMLNEGICP-NFATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       532 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      +++|++.++++.+.  .| +...+..+..++...|++++|.++++++++
T Consensus       653 ~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~  699 (1157)
T PRK11447        653 LAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP  699 (1157)
T ss_pred             HHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            99999999998864  44 455667788888999999999999999875

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.98  E-value=3.2e-25  Score=223.04  Aligned_cols=544  Identities=12%  Similarity=0.024  Sum_probs=379.2

Q ss_pred             hhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 008022            6 GEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMIN   85 (581)
Q Consensus         6 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   85 (581)
                      ...|++++|+..|+.+++..+. +..++..+++.|...|++++|+..+++..+..+ .|...+..+ ..+   +++.+|.
T Consensus        55 ~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~~kA~  128 (987)
T PRK09782         55 QKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVEVKSV  128 (987)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccChhHH
Confidence            3459999999999999998776 699999999999999999999999999998654 444444443 222   8999999


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHH--------HHhcCChhHHHHHHHHHhhCCCCCCcchHHHH-HHHHHccCCHHHHHH
Q 008022           86 PIYSNMKRDGMEPNVFTYNILLKA--------LCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTI-VSSICKLGQVEEARE  156 (581)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~  156 (581)
                      .+++++.... +.+..++..+...        |.+.   ++|.+.++ .......|++.+.... .+.|...|++++|++
T Consensus       129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~  203 (987)
T PRK09782        129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT  203 (987)
T ss_pred             HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence            9999999885 4556666666655        5444   55555555 3333333445545555 889999999999999


Q ss_pred             HHHHh----CCCcchHHHHHHHHHh-cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 008022          157 LAMRF----GSGVSVYNALINGLCK-EHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGC  231 (581)
Q Consensus       157 ~~~~~----~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  231 (581)
                      .+.++    +.+......|..+|.. .++ +.+..+++.    .++-++..+..+...+.+.|+.+.|..+++++.....
T Consensus       204 lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~  278 (987)
T PRK09782        204 LYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT  278 (987)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence            99988    4555556777777777 366 777777553    2334777888888999999999999988887643311


Q ss_pred             C-CCcccHH------------------------------HHHHHHHccCCHHHHHHHH----------------------
Q 008022          232 N-PNIHSFT------------------------------SLLKGYLLGGRTHEASDLW----------------------  258 (581)
Q Consensus       232 ~-~~~~~~~------------------------------~l~~~~~~~~~~~~a~~~~----------------------  258 (581)
                      . |+..++.                              .++..+.+.++++.+.++.                      
T Consensus       279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  358 (987)
T PRK09782        279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK  358 (987)
T ss_pred             CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence            1 1111111                              1234445555555444442                      


Q ss_pred             -------HHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC-C-CCCcHHhHHHHHHHHHhcCC---HHHHHH
Q 008022          259 -------NRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN-S-CPPNVTTYSALIDGFAKAGN---LLGASQ  326 (581)
Q Consensus       259 -------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~  326 (581)
                             ..+.+.. +-+......+.....+.|+.++|.++++..... + ...+......++..|.+.+.   ...+..
T Consensus       359 ~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  437 (987)
T PRK09782        359 AEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI  437 (987)
T ss_pred             hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence                   2222210 113333344444556778888888888887662 1 22344455567777766655   222322


Q ss_pred             H----------------------HHHHHhC-CC-CC--ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHH
Q 008022          327 I----------------------WNRMISN-GC-SP--NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNT  380 (581)
Q Consensus       327 ~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  380 (581)
                      +                      +...... +. ++  +...+..+..++.. +++++|...+.+.....  |+......
T Consensus       438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~  514 (987)
T PRK09782        438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA  514 (987)
T ss_pred             hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence            2                      1111111 11 23  45566777777766 78888999888777653  44433334


Q ss_pred             HHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC
Q 008022          381 FIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM  460 (581)
Q Consensus       381 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  460 (581)
                      +...+...|++++|...|+++...  +|+...+..+...+.+.|++++|...++...+.. +.+...+..+.......|+
T Consensus       515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr  591 (987)
T PRK09782        515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQ  591 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCC
Confidence            455556889999999999987654  3444556667778888999999999999988764 3344444444445556699


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHH
Q 008022          461 VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYL  539 (581)
Q Consensus       461 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~  539 (581)
                      +++|...+++.+..  .|+...+..++.++.+.|++++|+..++++..   ..| +...+..++.++...|++++|+..+
T Consensus       592 ~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l  666 (987)
T PRK09782        592 PELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREML  666 (987)
T ss_pred             HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999886  45688889999999999999999999999998   557 6678888999999999999999999


Q ss_pred             HHHHHcCCCC-CHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          540 QKMLNEGICP-NFATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       540 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      +++++.  .| +...+..+..++...|++++|++.++++++
T Consensus       667 ~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        667 ERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVID  705 (987)
T ss_pred             HHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            999874  45 466788889999999999999999998875

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=6.9e-24  Score=213.45  Aligned_cols=551  Identities=11%  Similarity=0.003  Sum_probs=389.8

Q ss_pred             ChhHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------
Q 008022            1 MIEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDA------   74 (581)
Q Consensus         1 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------   74 (581)
                      |.+.|...|++++|+..+++.++.++ -+...+..+ ..+   +++++|..+++++....+ .+..++..+...      
T Consensus        84 LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i---~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~  157 (987)
T PRK09782         84 LAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI---PVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNA  157 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh---ccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccch
Confidence            35678899999999999999998854 244444444 222   899999999999998665 445555555554      


Q ss_pred             --HHhcCCcchHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHc-cCC
Q 008022           75 --LLAENRFSMINPIYSNMKRDGMEPNVFTYNIL-LKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK-LGQ  150 (581)
Q Consensus        75 --~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~  150 (581)
                        |.+.   +.|...++ .......|++.+.... ...|.+.|++++|++++.++.+.+.. +......|..+|.. .++
T Consensus       158 l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~  232 (987)
T PRK09782        158 LRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD  232 (987)
T ss_pred             hhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH
Confidence              5555   45555555 3333333445444444 88999999999999999999998543 45556677778887 466


Q ss_pred             HHHHHHHHHHh-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCcccHHHH----------------------
Q 008022          151 VEEARELAMRF-GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGID-PNVITYSTI----------------------  206 (581)
Q Consensus       151 ~~~a~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l----------------------  206 (581)
                       +.+..+++.. ..++..+..++..+.+.|+.++|.++++++...... |...++.-+                      
T Consensus       233 -~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~  311 (987)
T PRK09782        233 -DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADN  311 (987)
T ss_pred             -HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHH
Confidence             8887776544 457788889999999999999999999887554221 222222211                      


Q ss_pred             --------HHHHHccCChhHHHHHHH-----------------------------HHHHcCCCCCcccHHHHHHHHHccC
Q 008022          207 --------ISSLCDVGNVETSLGILG-----------------------------QMFVRGCNPNIHSFTSLLKGYLLGG  249 (581)
Q Consensus       207 --------~~~~~~~g~~~~a~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~  249 (581)
                              +..+.+.++++.+.++..                             .+.... +-+......+.....+.|
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~  390 (987)
T PRK09782        312 RQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNG  390 (987)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence                    334445555554444421                             111110 113333334444556789


Q ss_pred             CHHHHHHHHHHHHhC--CCCCCHHhHHHHHHHHHhcCC---hhhHHHH----------------------HHHHHhC-C-
Q 008022          250 RTHEASDLWNRMIRE--GFLPNVVAYSTLIHGLCSNGS---MDEAVSV----------------------SYQMEEN-S-  300 (581)
Q Consensus       250 ~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~~~~~~-~-  300 (581)
                      +.++|.++++.....  +-.++.....-++..|.+.+.   ..++..+                      +...... + 
T Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  470 (987)
T PRK09782        391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD  470 (987)
T ss_pred             cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence            999999999988773  122334445577777777766   2233222                      1111111 1 


Q ss_pred             CCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhH
Q 008022          301 CPP--NVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTF  378 (581)
Q Consensus       301 ~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  378 (581)
                      .++  +...+..+..++.. ++..+|...+.+.....  |+......+...+...|++++|...++++...  +|+...+
T Consensus       471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~  545 (987)
T PRK09782        471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL  545 (987)
T ss_pred             CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence            134  67778888877776 78888999888877663  55554444556667899999999999998665  4555556


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Q 008022          379 NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA  458 (581)
Q Consensus       379 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  458 (581)
                      ..+..++...|+++.|...++...+.. ++....+..+.......|++++|...+++..+.  .|+...+..+...+.+.
T Consensus       546 ~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l  622 (987)
T PRK09782        546 LAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR  622 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence            677788899999999999999998765 233333334444455669999999999999986  56788899999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHH
Q 008022          459 GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFI  537 (581)
Q Consensus       459 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~  537 (581)
                      |++++|+..+++.+... +.+...++.++.++...|++++|++.++++.+   ..| ++..+..++.++...|++++|+.
T Consensus       623 G~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~---l~P~~~~a~~nLA~al~~lGd~~eA~~  698 (987)
T PRK09782        623 HNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK---GLPDDPALIRQLAYVNQRLDDMAATQH  698 (987)
T ss_pred             CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999975 55778899999999999999999999999998   557 67789999999999999999999


Q ss_pred             HHHHHHHcCCCCCH-HhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022          538 YLQKMLNEGICPNF-ATWNVLVRSLFSNLGHLGPVYILDDIM  578 (581)
Q Consensus       538 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~  578 (581)
                      .++++++  +.|+. .+.........+..+++.|.+-+++..
T Consensus       699 ~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~  738 (987)
T PRK09782        699 YARLVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW  738 (987)
T ss_pred             HHHHHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            9999998  45664 455556666666666777776666543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.96  E-value=7.3e-24  Score=199.37  Aligned_cols=557  Identities=12%  Similarity=0.025  Sum_probs=297.0

Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 008022           11 IDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSN   90 (581)
Q Consensus        11 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   90 (581)
                      ++.|.+.|..+++..+ +|...+..-+......|+|..|+.+|..++..++...++....+..++.+.|+.+.|+..|++
T Consensus       146 ~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~r  224 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFER  224 (1018)
T ss_pred             HHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHH
Confidence            4666666666666543 255555555555566677777777777765543332222333334555666777777777777


Q ss_pred             HHhCCCCCChhhHHHHHHHHHhc---CChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh------
Q 008022           91 MKRDGMEPNVFTYNILLKALCKN---NRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF------  161 (581)
Q Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------  161 (581)
                      ..+.+ |.++.++..|...-...   ..+..+..++...-..+ .-++...+.|...|.-.|+++.+..+...+      
T Consensus       225 alqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~  302 (1018)
T KOG2002|consen  225 ALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN  302 (1018)
T ss_pred             HHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence            66654 23333333333222222   23444555555444432 225666666666666667776666665555      


Q ss_pred             -CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHH
Q 008022          162 -GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTS  240 (581)
Q Consensus       162 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  240 (581)
                       +.-...|.-+.++|-..|++++|...|-+..+....-....+..+...+.+.|+++.+...|+.+.+.. +.+..+...
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~i  381 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKI  381 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHH
Confidence             122334556666666677777777666655554211112233445566666777777776666666652 333455555


Q ss_pred             HHHHHHccC----CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHH----hCCCCCcHHhHHHHH
Q 008022          241 LLKGYLLGG----RTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQME----ENSCPPNVTTYSALI  312 (581)
Q Consensus       241 l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~  312 (581)
                      +...|...+    ..+.|..++.+..+.. +.|...|-.+...+... +...++..+..+.    ..+.++.+...+.+.
T Consensus       382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva  459 (1018)
T KOG2002|consen  382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVA  459 (1018)
T ss_pred             HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence            555555443    3345555555554442 22455555555444333 3222244443322    333345566666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC---CCCCCh------hhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022          313 DGFAKAGNLLGASQIWNRMISN---GCSPNV------VAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIK  383 (581)
Q Consensus       313 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  383 (581)
                      ..+...|++..|...|......   ...++.      .+--.+...+-..++++.|.+.|..+.... |.-...|-.+..
T Consensus       460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~  538 (1018)
T KOG2002|consen  460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGC  538 (1018)
T ss_pred             HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhH
Confidence            6666667777776666665443   111222      122234445555566666666666666552 222333333333


Q ss_pred             HhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCcccHHHHHHHHHHHHh-----
Q 008022          384 GLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC-GIQLNIVTYNTILHGVCR-----  457 (581)
Q Consensus       384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-----  457 (581)
                      .....++..+|...++.....+ ..++..+..+...+.+...+..|.+-|..+.+. ...+|..+.-.|.+.|.+     
T Consensus       539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~  617 (1018)
T KOG2002|consen  539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP  617 (1018)
T ss_pred             HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence            3334455666666666665533 234444555555566655555555555444332 112455555555554432     


Q ss_pred             -------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccC
Q 008022          458 -------AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSG  530 (581)
Q Consensus       458 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  530 (581)
                             .+..++|+++|.++++.. +.|..+-+.++-+++..|++.+|+.+|.++.+..  .....+|..++.+|..+|
T Consensus       618 ~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~  694 (1018)
T KOG2002|consen  618 SRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQG  694 (1018)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHH
Confidence                   233455666666666554 4455566666666666666666666666666521  123445666666666666


Q ss_pred             CHHHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022          531 GMQEAFIYLQKMLNEGI-CPNFATWNVLVRSLFSNLGHLGPVYILDDIM  578 (581)
Q Consensus       531 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  578 (581)
                      ++..|+++|+...+.-. ..+..+...|.+++++.|++.+|.+.+...+
T Consensus       695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~  743 (1018)
T KOG2002|consen  695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR  743 (1018)
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            66666666666644322 2345555666666666666666665554443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.96  E-value=7.8e-24  Score=199.16  Aligned_cols=531  Identities=14%  Similarity=0.085  Sum_probs=409.9

Q ss_pred             hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---c
Q 008022            5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR---F   81 (581)
Q Consensus         5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~   81 (581)
                      ....|++..|+.+|..++..++..-+.....+...+.+.|+.+.|+..|+++.+.++ .++.++..+...-....+   +
T Consensus       174 ~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~  252 (1018)
T KOG2002|consen  174 AYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSY  252 (1018)
T ss_pred             HhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHH
Confidence            456799999999999988866655556666677888999999999999999999665 444444444443333443   5


Q ss_pred             chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC--CCcchHHHHHHHHHccCCHHHHHHHHH
Q 008022           82 SMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCA--PDAVSYTTIVSSICKLGQVEEARELAM  159 (581)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~  159 (581)
                      ..+..++...-..+ +.++...+.|...+...|++..+..+...+......  .-...|..+.++|...|++++|...+.
T Consensus       253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~  331 (1018)
T KOG2002|consen  253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM  331 (1018)
T ss_pred             HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            56777777766665 678889999999999999999999999988776311  123457789999999999999999999


Q ss_pred             Hh----CCC-cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC----ChhHHHHHHHHHHHcC
Q 008022          160 RF----GSG-VSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVG----NVETSLGILGQMFVRG  230 (581)
Q Consensus       160 ~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~  230 (581)
                      +.    +.+ .-.+..+.+.++..|+++.+...|+...... +-+..|...+...|...+    ..+.|..++.+..+.-
T Consensus       332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~  410 (1018)
T KOG2002|consen  332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT  410 (1018)
T ss_pred             HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc
Confidence            88    333 4456678899999999999999999998873 336677788888888775    4567777777777653


Q ss_pred             CCCCcccHHHHHHHHHccCCHHHHHHHHHHHH----hCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC---CCC-
Q 008022          231 CNPNIHSFTSLLKGYLLGGRTHEASDLWNRMI----REGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN---SCP-  302 (581)
Q Consensus       231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-  302 (581)
                       +.|...|..+...+....-+ .++..|....    ..+..+.+...|.+...+...|.+.+|...|......   ... 
T Consensus       411 -~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~  488 (1018)
T KOG2002|consen  411 -PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK  488 (1018)
T ss_pred             -cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc
Confidence             55677888777777655444 4477776544    3455577888999999999999999999999988765   112 


Q ss_pred             -----CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChh
Q 008022          303 -----PNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVV-AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTV  376 (581)
Q Consensus       303 -----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  376 (581)
                           ++..+-..+....-..++.+.|.+.|..+.+.  .|+-. .|..+.......+...+|...+......+ ..++.
T Consensus       489 de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~  565 (1018)
T KOG2002|consen  489 DEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPN  565 (1018)
T ss_pred             cccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcH
Confidence                 22233445666777788999999999999886  34433 34444433344578889999999988765 67788


Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHh------------cCCHHHHHHHHHHHHHcCCcc
Q 008022          377 TFNTFIKGLCGCGRVDWAMKLLDQMKQYE-CLPNITTYNELLDGLLR------------VNRVKEAFELVTEIEKCGIQL  443 (581)
Q Consensus       377 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~  443 (581)
                      .++.+...+.+...+..|.+-|..+.+.- ..+|..+...|.+.+..            .+..++|+++|.++++.. |-
T Consensus       566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pk  644 (1018)
T KOG2002|consen  566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PK  644 (1018)
T ss_pred             HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cc
Confidence            88888889999999998988777764432 12566666666665543            245678999999998874 66


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHH
Q 008022          444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLL  523 (581)
Q Consensus       444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~  523 (581)
                      |...-+.+...++..|++.+|..+|.+..+.. .....+|..++++|..+|+|..|+++|+.+...+.-..+......|.
T Consensus       645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~La  723 (1018)
T KOG2002|consen  645 NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLA  723 (1018)
T ss_pred             hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence            88888999999999999999999999999874 34667899999999999999999999999988777666889999999


Q ss_pred             HHHHccCCHHHHHHHHHHHHHc
Q 008022          524 WGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       524 ~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      +++.+.|.+.+|.+.+..+...
T Consensus       724 ra~y~~~~~~eak~~ll~a~~~  745 (1018)
T KOG2002|consen  724 RAWYEAGKLQEAKEALLKARHL  745 (1018)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHh
Confidence            9999999999999999988764

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.95  E-value=7.1e-24  Score=189.60  Aligned_cols=447  Identities=17%  Similarity=0.142  Sum_probs=340.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHH----HHhCCCcchHHHHHHHHHhc
Q 008022          103 YNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELA----MRFGSGVSVYNALINGLCKE  178 (581)
Q Consensus       103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~l~~~~~~~  178 (581)
                      ...+..-..+.|++.+|++.-...-+.+. .+......+-..+....+.+.....-    +..+.-..+|..+.+.+-..
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER  129 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccCC-CcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence            34455556677888888876665544421 12222222333444444444433322    12256677888888999999


Q ss_pred             CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHH-HHHHHHHccCCHHHHHHH
Q 008022          179 HKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFT-SLLKGYLLGGRTHEASDL  257 (581)
Q Consensus       179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~  257 (581)
                      |+++.|+.+++.+.+...+ ....|..+..++...|+.+.|...|.+.++.  .|+..... .+.......|+..+|...
T Consensus       130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c  206 (966)
T KOG4626|consen  130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC  206 (966)
T ss_pred             chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence            9999999999998887332 5678888889999999999999999888876  45543333 234444557889999988


Q ss_pred             HHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008022          258 WNRMIREGFLPN-VVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGC  336 (581)
Q Consensus       258 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  336 (581)
                      |.+..+.  .|. ...|+.|...+...|+...|+..|++..+.. |.-...|-.+...|...+.++.|...|.+.....+
T Consensus       207 YlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp  283 (966)
T KOG4626|consen  207 YLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP  283 (966)
T ss_pred             HHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence            8888876  343 3458888888999999999999999888764 33466788899999999999999999988877532


Q ss_pred             CCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 008022          337 SPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNEL  416 (581)
Q Consensus       337 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  416 (581)
                       .....+..+...|..+|..+.|+..+++..... |.-+..|+.+..++-..|++.+|...|++..... +......+.|
T Consensus       284 -n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL  360 (966)
T KOG4626|consen  284 -NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL  360 (966)
T ss_pred             -cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence             245567777778889999999999999998764 5557889999999999999999999999988765 3345678889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCC
Q 008022          417 LDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD-AITFNIIIYAYCKQGK  495 (581)
Q Consensus       417 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  495 (581)
                      ...+...|.+++|..+|....+.. +--...++.|...|-+.|++++|+..|++.++-  .|+ ...++.++..|-..|+
T Consensus       361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~  437 (966)
T KOG4626|consen  361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGD  437 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhh
Confidence            999999999999999999988752 333567888899999999999999999999874  555 5678999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhccCC
Q 008022          496 VNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF-ATWNVLVRSLFSNLGH  567 (581)
Q Consensus       496 ~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~  567 (581)
                      .+.|++.+.+++.   ++|. ...++.|+..|...|+..+|+.-|+++++  ++||. ..+-.++.++.--.+.
T Consensus       438 v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw  506 (966)
T KOG4626|consen  438 VSAAIQCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDW  506 (966)
T ss_pred             HHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcc
Confidence            9999999999998   6784 56889999999999999999999999987  57774 4555666555333333

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.94  E-value=5.2e-23  Score=184.14  Aligned_cols=440  Identities=17%  Similarity=0.139  Sum_probs=345.2

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHc
Q 008022           68 YNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK  147 (581)
Q Consensus        68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  147 (581)
                      ...+..-..+.|++.+|++.-...-..+ +.+....-.+-..+.+..+.+....--....+.. +.-..+|+.+...+-.
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE  128 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence            3445556667778887777666555443 3333333344445555555555544433333331 2245677778888888


Q ss_pred             cCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH-HHHHHHHHccCChhHHHHH
Q 008022          148 LGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITY-STIISSLCDVGNVETSLGI  222 (581)
Q Consensus       148 ~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~  222 (581)
                      .|++.+|+..++..    |.....|..+..++...|+.+.|.+.|.+..+.  .|+.... +.+....-..|+.++|...
T Consensus       129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c  206 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC  206 (966)
T ss_pred             hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence            88888888877776    666788888889999999999999999888876  4443333 2344555668999999999


Q ss_pred             HHHHHHcCCCCC-cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 008022          223 LGQMFVRGCNPN-IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPN-VVAYSTLIHGLCSNGSMDEAVSVSYQMEENS  300 (581)
Q Consensus       223 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  300 (581)
                      |.+.++.  .|. ...|..|...+...|+...|+..|++..+.+  |+ ...|-.|...|...+.+++|+..+.+.....
T Consensus       207 YlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr  282 (966)
T KOG4626|consen  207 YLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR  282 (966)
T ss_pred             HHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence            9888877  343 6778889999999999999999999998874  43 4568889999999999999999998887653


Q ss_pred             CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHH
Q 008022          301 CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPN-VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFN  379 (581)
Q Consensus       301 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  379 (581)
                       |.....+..+...|...|.++.|+..|++.++.  .|+ +..|+.+..++-..|+..+|.+.+.+..... +......+
T Consensus       283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~  358 (966)
T KOG4626|consen  283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN  358 (966)
T ss_pred             -CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence             446677888888899999999999999999886  344 5689999999999999999999999998874 56678899


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHhc
Q 008022          380 TFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN-IVTYNTILHGVCRA  458 (581)
Q Consensus       380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  458 (581)
                      .|...|...|.++.|..+|....+.. +.-....+.|...|-++|++++|+..+++.++  +.|+ ...|+.+...|-..
T Consensus       359 NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~  435 (966)
T KOG4626|consen  359 NLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM  435 (966)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence            99999999999999999999988754 22345788999999999999999999999998  4665 56899999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHH
Q 008022          459 GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGI  526 (581)
Q Consensus       459 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~  526 (581)
                      |+.+.|.+.+.+++..+ +.=...++.|+..|-.+|++.+|++-++++.+   ++|| +..+..++.++
T Consensus       436 g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk---lkPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  436 GDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK---LKPDFPDAYCNLLHCL  500 (966)
T ss_pred             hhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc---cCCCCchhhhHHHHHH
Confidence            99999999999999864 33466889999999999999999999999998   7785 44666666554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=1.2e-20  Score=187.49  Aligned_cols=425  Identities=13%  Similarity=-0.020  Sum_probs=283.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhc
Q 008022          103 YNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKE  178 (581)
Q Consensus       103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~  178 (581)
                      +......+.+.|+++.|+..|++.+..  .|++..|..+..+|...|++++|++.+.+.    |.+..++..+..++...
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            445666777888888888888888765  566777888888888888888888888877    66677888888888888


Q ss_pred             CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHH
Q 008022          179 HKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLW  258 (581)
Q Consensus       179 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  258 (581)
                      |++++|+.-|......+.. +......++..+..    ..+........+.. +++...+..+.. +...........-+
T Consensus       208 g~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~  280 (615)
T TIGR00990       208 GKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL  280 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence            9988888877766544211 11111112211111    12222233332321 222233332222 22111111111111


Q ss_pred             HHHHhCCCCCCH-HhHHHHHHH---HHhcCChhhHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          259 NRMIREGFLPNV-VAYSTLIHG---LCSNGSMDEAVSVSYQMEENS--CPPNVTTYSALIDGFAKAGNLLGASQIWNRMI  332 (581)
Q Consensus       259 ~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  332 (581)
                      ....+.  .+.. ..+..+...   ....+++++|.+.|+...+.+  .+.....+..+...+...|++++|...+++..
T Consensus       281 ~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal  358 (615)
T TIGR00990       281 EDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI  358 (615)
T ss_pred             hccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            111111  1111 111111111   123467888888888888754  23345667777888888899999999999888


Q ss_pred             hCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhh
Q 008022          333 SNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITT  412 (581)
Q Consensus       333 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  412 (581)
                      ...+. +...|..+...+...|++++|...+++..... +.+..++..+...+...|++++|...|++..+.. +.+...
T Consensus       359 ~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~  435 (615)
T TIGR00990       359 ELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFS  435 (615)
T ss_pred             HcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHH
Confidence            76322 35577778888888899999999999887764 5667888888888899999999999999888765 335666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH------HHHHH
Q 008022          413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAI------TFNII  486 (581)
Q Consensus       413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l  486 (581)
                      +..+...+.+.|++++|+..++...+.. +.+...++.+...+...|++++|++.|++.+......+..      .++..
T Consensus       436 ~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a  514 (615)
T TIGR00990       436 HIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA  514 (615)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence            7778888888999999999999888753 5567788888888899999999999999988763221111      11222


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          487 IYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       487 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      ...+...|++++|.++++++..   +.| +...+..++..+...|++++|+++|+++.+.
T Consensus       515 ~~~~~~~~~~~eA~~~~~kAl~---l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       515 LALFQWKQDFIEAENLCEKALI---IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            2233446899999999999887   446 4557888899999999999999999998764

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=2.6e-20  Score=184.97  Aligned_cols=429  Identities=15%  Similarity=0.026  Sum_probs=253.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 008022           33 FISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCK  112 (581)
Q Consensus        33 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  112 (581)
                      +...+..+.+.|++++|+..|++++...  |++..|..+..++.+.|++++|+..++...+.. +.+...+..+..++..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            4455667777777777777777776643  455666777777777777777777777777664 4455667777777777


Q ss_pred             cCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 008022          113 NNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMV  192 (581)
Q Consensus       113 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  192 (581)
                      .|++++|...|......+.. +......++..+........+...++..+.+...+..+...+                 
T Consensus       207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~-----------------  268 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL-----------------  268 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH-----------------
Confidence            77777777766655443111 111111111111111111222222222222222222221111                 


Q ss_pred             HCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-cccHHHHHHH---HHccCCHHHHHHHHHHHHhCC-CC
Q 008022          193 DRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPN-IHSFTSLLKG---YLLGGRTHEASDLWNRMIREG-FL  267 (581)
Q Consensus       193 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~  267 (581)
                                         ..........-+....+.  .+. ...+..+...   ....+++++|.+.|+...+.+ ..
T Consensus       269 -------------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~  327 (615)
T TIGR00990       269 -------------------QSFRPKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG  327 (615)
T ss_pred             -------------------HHccCCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC
Confidence                               111111111111111111  111 1111111111   122356667777777766653 12


Q ss_pred             C-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 008022          268 P-NVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCM  346 (581)
Q Consensus       268 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  346 (581)
                      | ....+..+...+...|++++|+..+++..+.. |.....|..+...+...|++++|...++++.+..+ .+...+..+
T Consensus       328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~l  405 (615)
T TIGR00990       328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHR  405 (615)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence            2 33456666666777777777777777776653 33455666777777777777777777777766532 245667777


Q ss_pred             HHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 008022          347 VKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRV  426 (581)
Q Consensus       347 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  426 (581)
                      ...+...|++++|...|++..... |.+...+..+..++.+.|++++|+..|+...+.. +.+...++.+...+...|++
T Consensus       406 g~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~  483 (615)
T TIGR00990       406 AQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKF  483 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCH
Confidence            777777788888888887777664 4556667777777778888888888888776643 33456777777788888888


Q ss_pred             HHHHHHHHHHHHcCCcccHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 008022          427 KEAFELVTEIEKCGIQLNIV------TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAI  500 (581)
Q Consensus       427 ~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  500 (581)
                      ++|++.|+.........+..      .++.....+...|++++|.+++++.+... +.+...+..++.++.+.|++++|+
T Consensus       484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi  562 (615)
T TIGR00990       484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEAL  562 (615)
T ss_pred             HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence            88888888877643211111      12222233444688899999988888764 335556788888899999999999


Q ss_pred             HHHHHHhc
Q 008022          501 QLLDRIRG  508 (581)
Q Consensus       501 ~~~~~~~~  508 (581)
                      +.|+++.+
T Consensus       563 ~~~e~A~~  570 (615)
T TIGR00990       563 KLFERAAE  570 (615)
T ss_pred             HHHHHHHH
Confidence            99988877

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=3.4e-21  Score=182.10  Aligned_cols=303  Identities=17%  Similarity=0.146  Sum_probs=226.7

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhc
Q 008022          242 LKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPN---VTTYSALIDGFAKA  318 (581)
Q Consensus       242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~  318 (581)
                      ...+...|++++|...|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++   ...+..++..|...
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            3345566777777777777776632 2445666777777777777777777777766432211   24566677777788


Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHhhcCCChHHH
Q 008022          319 GNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPN----TVTFNTFIKGLCGCGRVDWA  394 (581)
Q Consensus       319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a  394 (581)
                      |+++.|..+|+++.+.. +++..++..++..+.+.|++++|...++.+...+..+.    ...+..+...+...|++++|
T Consensus       121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            88888888888877653 23566777778888888888888888888776542221    12345667778888999999


Q ss_pred             HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022          395 MKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE  474 (581)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  474 (581)
                      ...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|.+.++++...
T Consensus       200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999987754 33455777888899999999999999999987643333466788889999999999999999999886


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCH
Q 008022          475 GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN---SGGMQEAFIYLQKMLNEGICPNF  551 (581)
Q Consensus       475 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~  551 (581)
                        .|+...+..++..+.+.|++++|..+++++.+   ..|+...+..++..+..   .|+.++++.+++++.+.++.|++
T Consensus       279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~---~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p  353 (389)
T PRK11788        279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLR---RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP  353 (389)
T ss_pred             --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence              45666678889999999999999999999888   46888888877777664   56899999999999988777776


Q ss_pred             H
Q 008022          552 A  552 (581)
Q Consensus       552 ~  552 (581)
                      .
T Consensus       354 ~  354 (389)
T PRK11788        354 R  354 (389)
T ss_pred             C
Confidence            5

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.91  E-value=9e-20  Score=180.16  Aligned_cols=332  Identities=11%  Similarity=0.047  Sum_probs=218.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHc
Q 008022          168 YNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLL  247 (581)
Q Consensus       168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  247 (581)
                      ...++..+.+.|++++|..+++........ +...+..++.+....|+++.|...++++.... +.+...+..+...+..
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~  122 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK  122 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence            444556667777777777777777666333 34445555566666777777777777777663 3345566666777777


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 008022          248 GGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQI  327 (581)
Q Consensus       248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  327 (581)
                      .|++++|.+.+++..+.. +.+...+..+...+...|++++|...+..+.... +.+...+..+ ..+...|++++|...
T Consensus       123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~  199 (656)
T PRK15174        123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDL  199 (656)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence            777777777777777653 2245556667777777777777777777665543 2233333333 236667777777777


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHH----HHHHHHHHhh
Q 008022          328 WNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDW----AMKLLDQMKQ  403 (581)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~  403 (581)
                      ++.+.+....++......+...+...|++++|...+++..... +.+...+..+...+...|++++    |...|++...
T Consensus       200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~  278 (656)
T PRK15174        200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ  278 (656)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence            7777665433334444445566777777777777777777654 5566667777777777777774    6777777766


Q ss_pred             CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 008022          404 YECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITF  483 (581)
Q Consensus       404 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  483 (581)
                      .. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|...++++...+ +.+...+
T Consensus       279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~  355 (656)
T PRK15174        279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWN  355 (656)
T ss_pred             hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHH
Confidence            54 3345567777777777788888888877777653 4445566667777777788888888877777653 1222334


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          484 NIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       484 ~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ..++.++...|++++|++.|+++.+
T Consensus       356 ~~~a~al~~~G~~deA~~~l~~al~  380 (656)
T PRK15174        356 RYAAAALLQAGKTSEAESVFEHYIQ  380 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4456677777888888888877766

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=5.9e-21  Score=180.46  Aligned_cols=295  Identities=14%  Similarity=0.111  Sum_probs=246.5

Q ss_pred             HHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcc
Q 008022          277 IHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPN---VVAYTCMVKVLCQN  353 (581)
Q Consensus       277 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~  353 (581)
                      ...+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++   ...+..+...+...
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            445677899999999999999874 45677889999999999999999999999987632222   24577888999999


Q ss_pred             CChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCCHHHH
Q 008022          354 NMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI----TTYNELLDGLLRVNRVKEA  429 (581)
Q Consensus       354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a  429 (581)
                      |++++|..+|+++.... +.+..++..++..+...|++++|.+.++.+.+.+..+..    ..+..+...+...|++++|
T Consensus       121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            99999999999998764 567788999999999999999999999999876533221    2345677788899999999


Q ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 008022          430 FELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGG  509 (581)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  509 (581)
                      ...++++.+.. +.+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|.+.++++.+ 
T Consensus       200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-  277 (389)
T PRK11788        200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-  277 (389)
T ss_pred             HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence            99999998864 4456678888899999999999999999999864333356788899999999999999999999998 


Q ss_pred             CCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh---ccCCCChHHHHHHHhh
Q 008022          510 GEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFS---NLGHLGPVYILDDIMA  579 (581)
Q Consensus       510 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~  579 (581)
                        ..|+...+..++..+.+.|++++|..+++++.+.  .|+...+..++..+..   .|+..+++.+++++++
T Consensus       278 --~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        278 --EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             --hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence              4577777788999999999999999999999874  6888888877776664   4688899999998875

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.91  E-value=3.3e-19  Score=180.19  Aligned_cols=423  Identities=10%  Similarity=-0.010  Sum_probs=240.2

Q ss_pred             CCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHH
Q 008022           97 EPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALI  172 (581)
Q Consensus        97 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~  172 (581)
                      +.++....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.+.+++.    |.+...+..++
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la   90 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI   90 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3444444455556666777777777766665421 223334556666666666666666666654    44455555555


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHH
Q 008022          173 NGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTH  252 (581)
Q Consensus       173 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  252 (581)
                      .++...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...+..+
T Consensus        91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e  167 (765)
T PRK10049         91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA  167 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence            55556666666666666555541 12333 4455555555566666666665555542 222333344444455555555


Q ss_pred             HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHH-----hcCCH---HHH
Q 008022          253 EASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFA-----KAGNL---LGA  324 (581)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~---~~a  324 (581)
                      .|+..++.+..   .|+...   -+                          ........+....     ..+++   +.|
T Consensus       168 ~Al~~l~~~~~---~p~~~~---~l--------------------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~A  215 (765)
T PRK10049        168 PALGAIDDANL---TPAEKR---DL--------------------------EADAAAELVRLSFMPTRSEKERYAIADRA  215 (765)
T ss_pred             HHHHHHHhCCC---CHHHHH---HH--------------------------HHHHHHHHHHhhcccccChhHHHHHHHHH
Confidence            55555544332   121000   00                          0000011111111     11122   556


Q ss_pred             HHHHHHHHhC-CCCCChh-hHH----HHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHH
Q 008022          325 SQIWNRMISN-GCSPNVV-AYT----CMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLL  398 (581)
Q Consensus       325 ~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  398 (581)
                      +..++.+.+. ...|+.. .+.    ..+..+...+++++|+..|+.+...+.+........+..+|...|++++|+..|
T Consensus       216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l  295 (765)
T PRK10049        216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSIL  295 (765)
T ss_pred             HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            6666666543 1122211 111    112234556777777777777776542111112222456777778888888887


Q ss_pred             HHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------ccc---HHHHHHHHHHHHhcCCH
Q 008022          399 DQMKQYECLP---NITTYNELLDGLLRVNRVKEAFELVTEIEKCGI-----------QLN---IVTYNTILHGVCRAGMV  461 (581)
Q Consensus       399 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~  461 (581)
                      +.+.......   .......+..++...|++++|..+++.+.....           .|+   ...+..+...+...|++
T Consensus       296 ~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~  375 (765)
T PRK10049        296 TELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL  375 (765)
T ss_pred             HHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH
Confidence            7776543111   123344555667777888888888877765421           122   22445566777888899


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHH
Q 008022          462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQ  540 (581)
Q Consensus       462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~  540 (581)
                      ++|++.++++.... +.+...+..++..+...|++++|++.++++..   +.| +...+...+..+...|++++|..+++
T Consensus       376 ~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~---l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~  451 (765)
T PRK10049        376 PQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV---LEPRNINLEVEQAWTALDLQEWRQMDVLTD  451 (765)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            99999998888764 55677888888888888999999999998888   557 45566777778888889999999999


Q ss_pred             HHHHcCCCCCHHhHHHHHHHH
Q 008022          541 KMLNEGICPNFATWNVLVRSL  561 (581)
Q Consensus       541 ~~~~~~~~~~~~~~~~l~~~~  561 (581)
                      ++++.  .|+......+-+..
T Consensus       452 ~ll~~--~Pd~~~~~~~~~~~  470 (765)
T PRK10049        452 DVVAR--EPQDPGVQRLARAR  470 (765)
T ss_pred             HHHHh--CCCCHHHHHHHHHH
Confidence            88874  56655554444444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.91  E-value=1.7e-19  Score=178.24  Aligned_cols=335  Identities=10%  Similarity=0.011  Sum_probs=273.8

Q ss_pred             cccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH
Q 008022          200 VITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHG  279 (581)
Q Consensus       200 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  279 (581)
                      ......++..+.+.|+++.|..+++...... +-+...+..++.+....|++++|...++++....+. +...+..+...
T Consensus        42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~  119 (656)
T PRK15174         42 EQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASV  119 (656)
T ss_pred             ccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence            3345566778889999999999999998874 334556666777788899999999999999987432 56678888899


Q ss_pred             HHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHH
Q 008022          280 LCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQA  359 (581)
Q Consensus       280 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  359 (581)
                      +...|++++|...+.++.... |.+...+..+...+...|++++|...++.+....+. +...+..+ ..+...|++++|
T Consensus       120 l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA  196 (656)
T PRK15174        120 LLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPED  196 (656)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHH
Confidence            999999999999999998863 557788889999999999999999999988776433 23333333 347889999999


Q ss_pred             HHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHH
Q 008022          360 HSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKE----AFELVTE  435 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~  435 (581)
                      ...++.+......++......+..++...|++++|...++...... +.+...+..+...+...|++++    |...++.
T Consensus       197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~  275 (656)
T PRK15174        197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH  275 (656)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence            9999998776433444445556778889999999999999998765 4466778889999999999986    8999999


Q ss_pred             HHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 008022          436 IEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD  515 (581)
Q Consensus       436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~  515 (581)
                      +.+.. +.+...+..+...+...|++++|...+++++... +.+...+..++.++.+.|++++|++.++++..   ..|+
T Consensus       276 Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~---~~P~  350 (656)
T PRK15174        276 ALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR---EKGV  350 (656)
T ss_pred             HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcc
Confidence            98864 5567888999999999999999999999999875 44677788899999999999999999999998   3565


Q ss_pred             H-HhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          516 I-ISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       516 ~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      . ..+..++.++...|++++|...|+++.+.
T Consensus       351 ~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        351 TSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4 33445677889999999999999999874

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.91  E-value=3.7e-18  Score=160.38  Aligned_cols=354  Identities=12%  Similarity=0.116  Sum_probs=269.5

Q ss_pred             HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022            4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM   83 (581)
Q Consensus         4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (581)
                      .+..+|++++|+.++.++++.++. +...|..|...|-++|+.+++...+-.+...++ .|...|..+.....+.|++..
T Consensus       148 ~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~q  225 (895)
T KOG2076|consen  148 NLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQ  225 (895)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHH
Confidence            345569999999999999998765 899999999999999999999998887777665 566999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHH----HHHHHHHccCCHHHHHHHHH
Q 008022           84 INPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYT----TIVSSICKLGQVEEARELAM  159 (581)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~~~~  159 (581)
                      |.-+|.++.+.. +++....-.-...|-+.|+...|...|.++.+...+.|..-..    ..+..+...++.+.|.+.+.
T Consensus       226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le  304 (895)
T KOG2076|consen  226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE  304 (895)
T ss_pred             HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999986 5666666666788889999999999999999874322322222    34566777888899999988


Q ss_pred             Hh------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC---------------------------CCCCcccHHHH
Q 008022          160 RF------GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRG---------------------------IDPNVITYSTI  206 (581)
Q Consensus       160 ~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l  206 (581)
                      ..      ..+...++.++..+.+...++.+......+....                           ..++.... -+
T Consensus       305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl  383 (895)
T KOG2076|consen  305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL  383 (895)
T ss_pred             HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence            87      3456678999999999999999999888877621                           12222221 12


Q ss_pred             HHHHHccCChhHHHHHHHHHHHcCC--CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 008022          207 ISSLCDVGNVETSLGILGQMFVRGC--NPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNG  284 (581)
Q Consensus       207 ~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  284 (581)
                      .-++.+....+....+...+.+.+.  ..+...|..+..++...|++..|+.++..+......-+...|..+..+|...|
T Consensus       384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~  463 (895)
T KOG2076|consen  384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG  463 (895)
T ss_pred             hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence            2233445555555666666666653  33467788889999999999999999999998755556778999999999999


Q ss_pred             ChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCChhhHHHHHHHHHccCCh
Q 008022          285 SMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISN--------GCSPNVVAYTCMVKVLCQNNMF  356 (581)
Q Consensus       285 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~  356 (581)
                      ..+.|...+....... |.+...-..+...+.+.|+.++|.+.+..+..-        +..|+..........+.+.|+.
T Consensus       464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~  542 (895)
T KOG2076|consen  464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR  542 (895)
T ss_pred             hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence            9999999999988763 456666777888889999999999999886532        2233333344444556666666


Q ss_pred             hHHHHH
Q 008022          357 HQAHSL  362 (581)
Q Consensus       357 ~~a~~~  362 (581)
                      ++-...
T Consensus       543 E~fi~t  548 (895)
T KOG2076|consen  543 EEFINT  548 (895)
T ss_pred             HHHHHH
Confidence            554433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.90  E-value=2.5e-18  Score=170.10  Aligned_cols=432  Identities=11%  Similarity=0.054  Sum_probs=256.2

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCCc-chHHHHHHHHHccCCHHHHHHHHHHh--CCCcchHHHH--HHHHHhcCChhHHHH
Q 008022          112 KNNRVDGAYKLLVEMGNKGCAPDA-VSYTTIVSSICKLGQVEEARELAMRF--GSGVSVYNAL--INGLCKEHKIEEAFW  186 (581)
Q Consensus       112 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~l--~~~~~~~~~~~~a~~  186 (581)
                      +.|+++.|+..|++..+.  .|+. .....++..+...|+.++|+..+++.  +.+...+..+  ...+...|++++|++
T Consensus        46 r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie  123 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA  123 (822)
T ss_pred             hCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            455555555555555443  1221 11114444444445555555555554  1122222222  334555566666666


Q ss_pred             HHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 008022          187 LLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGF  266 (581)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  266 (581)
                      +|+++.+.... ++..+..++..+...++.++|+..++++...  .|+...+..++..+...++..+|++.++++.+..+
T Consensus       124 ly~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P  200 (822)
T PRK14574        124 LWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAP  200 (822)
T ss_pred             HHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCC
Confidence            66666555222 3344444555555566666666666665544  33333333333333334444446666666665531


Q ss_pred             CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhH------HHHHHHH-----HhcCC---HHHHHHHHHHHH
Q 008022          267 LPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTY------SALIDGF-----AKAGN---LLGASQIWNRMI  332 (581)
Q Consensus       267 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~~~---~~~a~~~~~~~~  332 (581)
                       .+...+..+..++.+.|-...|.++..+-... +.+....+      ...++.-     ....+   .+.|..-++.+.
T Consensus       201 -~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~  278 (822)
T PRK14574        201 -TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL  278 (822)
T ss_pred             -CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence             13444555555555666555555444332211 11111000      0000000     00111   234444455544


Q ss_pred             hC-CCCCChh-----hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCC
Q 008022          333 SN-GCSPNVV-----AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC  406 (581)
Q Consensus       333 ~~-~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  406 (581)
                      .. +..|...     ...-.+-++...+++.++++.++.+...+.+....+-..+.++|...+++++|..+|+.+.....
T Consensus       279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~  358 (822)
T PRK14574        279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG  358 (822)
T ss_pred             hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence            42 1223221     22234567788899999999999999887666677888899999999999999999998865431


Q ss_pred             -----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------cccH---HHHHHHHHHHHhcCCHHHHHHH
Q 008022          407 -----LPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGI-----------QLNI---VTYNTILHGVCRAGMVVEAFQL  467 (581)
Q Consensus       407 -----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~~~  467 (581)
                           +++......|..++...+++++|..+++.+.+...           .|++   ..+..++..+...|++.+|++.
T Consensus       359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~  438 (822)
T PRK14574        359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK  438 (822)
T ss_pred             cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence                 22333456788899999999999999999887311           1221   2344556677889999999999


Q ss_pred             HHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 008022          468 LGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEG  546 (581)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (581)
                      ++++.... +-|......++..+...|.+.+|.+.++.+..   +.| +..+....+.++...|++++|..+.+.+.+. 
T Consensus       439 le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~-  513 (822)
T PRK14574        439 LEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES---LAPRSLILERAQAETAMALQEWHQMELLTDDVISR-  513 (822)
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-
Confidence            99998775 66888899999999999999999999987776   457 5667778888889999999999999888874 


Q ss_pred             CCCCHHhHHH
Q 008022          547 ICPNFATWNV  556 (581)
Q Consensus       547 ~~~~~~~~~~  556 (581)
                       .|+......
T Consensus       514 -~Pe~~~~~~  522 (822)
T PRK14574        514 -SPEDIPSQE  522 (822)
T ss_pred             -CCCchhHHH
Confidence             565444333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.90  E-value=1e-18  Score=176.72  Aligned_cols=414  Identities=11%  Similarity=0.015  Sum_probs=211.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 008022           27 SCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL  106 (581)
Q Consensus        27 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  106 (581)
                      +.++......+....-.|+.++|++++....... +.+...+..+...+...|++++|..+|++..+.. +.+...+..+
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   89 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL   89 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            3466666666777777777777777777776522 2445556777777777777777777777776654 4455566666


Q ss_pred             HHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChh
Q 008022          107 LKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIE  182 (581)
Q Consensus       107 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~  182 (581)
                      +..+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++    |.+...+..+..++...+..+
T Consensus        90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e  167 (765)
T PRK10049         90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA  167 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence            777777777777777777777652 22344 666667777777777777777766    555666666666777777777


Q ss_pred             HHHHHHHHHHHCCCCCCcc------cHHHHHHHHH-----ccCCh---hHHHHHHHHHHHc-CCCCCcc-cHH----HHH
Q 008022          183 EAFWLLCEMVDRGIDPNVI------TYSTIISSLC-----DVGNV---ETSLGILGQMFVR-GCNPNIH-SFT----SLL  242 (581)
Q Consensus       183 ~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~  242 (581)
                      .|+..++....   .|+..      ....++....     ..+++   ++|+..++.+.+. ...|+.. .+.    ..+
T Consensus       168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l  244 (765)
T PRK10049        168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL  244 (765)
T ss_pred             HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence            77776665443   12200      0001111111     11112   3444444444432 1111111 000    001


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC---cHHhHHHHHHHHHhc
Q 008022          243 KGYLLGGRTHEASDLWNRMIREGFL-PNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPP---NVTTYSALIDGFAKA  318 (581)
Q Consensus       243 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~  318 (581)
                      ..+...|+.++|+..|+.+.+.+.. |+. ....+...|...|++++|...++.+.......   .......+..++...
T Consensus       245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~  323 (765)
T PRK10049        245 GALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES  323 (765)
T ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence            2223445555555555555544321 111 11112344555555555555555544322100   012233333444555


Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHhhcCCChHHHH
Q 008022          319 GNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPN---TVTFNTFIKGLCGCGRVDWAM  395 (581)
Q Consensus       319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~  395 (581)
                      |++++|..+++.+....+. ....+.                      ... ..|+   ...+..+...+...|++++|+
T Consensus       324 g~~~eA~~~l~~~~~~~P~-~~~~~~----------------------~~~-~~p~~~~~~a~~~~a~~l~~~g~~~eA~  379 (765)
T PRK10049        324 ENYPGALTVTAHTINNSPP-FLRLYG----------------------SPT-SIPNDDWLQGQSLLSQVAKYSNDLPQAE  379 (765)
T ss_pred             ccHHHHHHHHHHHhhcCCc-eEeecC----------------------CCC-CCCCchHHHHHHHHHHHHHHcCCHHHHH
Confidence            5555555555554443110 000000                      000 0111   122334445555556666666


Q ss_pred             HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022          396 KLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE  474 (581)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  474 (581)
                      +.++++.... +.+...+..+...+...|++++|++.+++..... |.+...+...+..+...|++++|..+++++++.
T Consensus       380 ~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        380 MRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            6666655443 3334455555555556666666666666655542 223444444444555566666666666666654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.90  E-value=3.5e-18  Score=169.03  Aligned_cols=439  Identities=11%  Similarity=0.015  Sum_probs=299.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022           29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK  108 (581)
Q Consensus        29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (581)
                      .+.....-+...++.|+++.|+..|+++.+..+...+.++ .++..+...|+.++|+..+++..... +........+..
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~  110 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAAR  110 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHH
Confidence            4455555566667888888888888888876543223344 77777778888888888888887211 222223333355


Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh---CCCcchHHHHHHHHHhcCChhHHH
Q 008022          109 ALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF---GSGVSVYNALINGLCKEHKIEEAF  185 (581)
Q Consensus       109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~  185 (581)
                      .+...|++++|+++|+++.+.... ++..+..++..+...++.++|++.++++   .++...+..++..+...++..+|+
T Consensus       111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL  189 (822)
T PRK14574        111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDAL  189 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHH
Confidence            777778888888888888877333 4566677778888888888888888887   223333333333333455565588


Q ss_pred             HHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccH------HHHHHHH---H--ccCC---H
Q 008022          186 WLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSF------TSLLKGY---L--LGGR---T  251 (581)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~~~---~  251 (581)
                      +.++++.+.. +-+...+..+..++.+.|-...|.++..+-...- .+....+      ...++.-   .  ...+   .
T Consensus       190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~  267 (822)
T PRK14574        190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA  267 (822)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            8888888873 2255666777788888888888887776543221 1111000      1111110   0  1122   3


Q ss_pred             HHHHHHHHHHHhC-CCCCCHH-----hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHH
Q 008022          252 HEASDLWNRMIRE-GFLPNVV-----AYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGAS  325 (581)
Q Consensus       252 ~~a~~~~~~~~~~-~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  325 (581)
                      +.|+.-++.+... +..|...     ...-.+-++...+++.++++.++.+...+.+....+-..+..+|...+++++|+
T Consensus       268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~  347 (822)
T PRK14574        268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA  347 (822)
T ss_pred             HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence            4566666666553 2123221     222345577788999999999999998876656678888899999999999999


Q ss_pred             HHHHHHHhCCC-----CCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCC-----------CCCh---hhHHHHHHHhh
Q 008022          326 QIWNRMISNGC-----SPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENC-----------PPNT---VTFNTFIKGLC  386 (581)
Q Consensus       326 ~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~  386 (581)
                      .++..+.....     +++......|..++...+++++|..+++++.....           .|++   ..+..++..+.
T Consensus       348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~  427 (822)
T PRK14574        348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV  427 (822)
T ss_pred             HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence            99998866531     22344457788899999999999999999877321           1222   23445677788


Q ss_pred             cCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHH
Q 008022          387 GCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQ  466 (581)
Q Consensus       387 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  466 (581)
                      -.|+..+|++.++.+.... +-|......+...+...|.+.+|.+.++...... +-+..+....+.++...+++++|..
T Consensus       428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~  505 (822)
T PRK14574        428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMEL  505 (822)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHH
Confidence            8899999999999997765 5677888888999999999999999997776652 4456677777888888899999999


Q ss_pred             HHHHHHHC
Q 008022          467 LLGKMLIE  474 (581)
Q Consensus       467 ~~~~~~~~  474 (581)
                      +.+.+...
T Consensus       506 ~~~~l~~~  513 (822)
T PRK14574        506 LTDDVISR  513 (822)
T ss_pred             HHHHHHhh
Confidence            99888876

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.87  E-value=2.9e-15  Score=135.99  Aligned_cols=544  Identities=13%  Similarity=0.077  Sum_probs=338.3

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 008022            8 KCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPI   87 (581)
Q Consensus         8 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~   87 (581)
                      .+|..+|..++..+.+.++. ++..|..-++.--..|.+..|..+..+=-+. .+.+.++|...++    ....+.|..+
T Consensus       264 l~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiR----Lhp~d~aK~v  337 (913)
T KOG0495|consen  264 LEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIR----LHPPDVAKTV  337 (913)
T ss_pred             HHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHh----cCChHHHHHH
Confidence            35778899999999988766 7778877777777788888888776544332 2244455544332    1222333333


Q ss_pred             HHHHHhCCCCCChhhHHH---------------------------HHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHH
Q 008022           88 YSNMKRDGMEPNVFTYNI---------------------------LLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTT  140 (581)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~---------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  140 (581)
                      .....+.. +.++..|..                           |-.+.....+.+.|.-++.+..+. ++.+.    -
T Consensus       338 vA~Avr~~-P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvec-cp~s~----d  411 (913)
T KOG0495|consen  338 VANAVRFL-PTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVEC-CPQSM----D  411 (913)
T ss_pred             HHHHHHhC-CCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHh-ccchH----H
Confidence            33333221 112222211                           112222344445566666666554 22222    2


Q ss_pred             HHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCcccHHHHHHHHHc
Q 008022          141 IVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCE----MVDRGIDPNVITYSTIISSLCD  212 (581)
Q Consensus       141 l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~  212 (581)
                      |..++.+...++.|..++.+.    |.+..+|.+....--.+|+.+...+++.+    +...|+..+...|..=...|-.
T Consensus       412 LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~  491 (913)
T KOG0495|consen  412 LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED  491 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence            334455556666677666665    66677777666666677777766666544    3344666666666666666777


Q ss_pred             cCChhHHHHHHHHHHHcCCCCC--cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHH
Q 008022          213 VGNVETSLGILGQMFVRGCNPN--IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAV  290 (581)
Q Consensus       213 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  290 (581)
                      .|..-.+..+....+..|+...  ..+|..-...|.+.+.++-|..+|...++.- +.+...|......--..|..++..
T Consensus       492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~  570 (913)
T KOG0495|consen  492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLE  570 (913)
T ss_pred             cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHH
Confidence            7777777777777766664432  4566666677777777777777777766652 224445655555555566777777


Q ss_pred             HHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCC
Q 008022          291 SVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFEN  370 (581)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  370 (581)
                      .++++.... +|.....|......+-..|+...|..++..+.+..+. +...|-.-+........++.|..+|.+.... 
T Consensus       571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~-  647 (913)
T KOG0495|consen  571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI-  647 (913)
T ss_pred             HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence            777777664 3445555666666666677777777777777666433 5556666667777777777777777776654 


Q ss_pred             CCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHH
Q 008022          371 CPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNIT-TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYN  449 (581)
Q Consensus       371 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  449 (581)
                       .++...|..-+....-.++.++|.+++++..+.  .|+.. .|..+.+.+.+.++.+.|.+.|..-.+. ++.....|.
T Consensus       648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWl  723 (913)
T KOG0495|consen  648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWL  723 (913)
T ss_pred             -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHH
Confidence             455566655555555567777777777776653  24433 5666666777777777777777666554 344455566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHcc
Q 008022          450 TILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNS  529 (581)
Q Consensus       450 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  529 (581)
                      .+...=.+.|.+-+|..++++..-.+ +.+...|...++.-.+.|..+.|..++.++.+..  +.+...|..-|+..-+.
T Consensus       724 lLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWaEaI~le~~~  800 (913)
T KOG0495|consen  724 LLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWAEAIWLEPRP  800 (913)
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHHHHHHhccCc
Confidence            66666666777777777777777665 4466677777777777777777777777776632  22455666666665555


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          530 GGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       530 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      ++-..+...+++.     .-|+...-.+...++...+.+.|.+++.+.++
T Consensus       801 ~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk  845 (913)
T KOG0495|consen  801 QRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVK  845 (913)
T ss_pred             ccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            5544444444443     34556666777778887888888888888765

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.87  E-value=6e-16  Score=140.31  Aligned_cols=507  Identities=12%  Similarity=0.053  Sum_probs=393.4

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Q 008022           14 VQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKR   93 (581)
Q Consensus        14 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~   93 (581)
                      -.++++..++. +|.++..|.....    ..+.+.|+.++.++.+.-+ .+.+.|.++    ++...|+.|..+++...+
T Consensus       365 K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp-~s~dLwlAl----arLetYenAkkvLNkaRe  434 (913)
T KOG0495|consen  365 KKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCP-QSMDLWLAL----ARLETYENAKKVLNKARE  434 (913)
T ss_pred             HHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhcc-chHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence            34566777766 3446666655443    5567779999998887543 566666654    445567888899988876


Q ss_pred             CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHH----hhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-------C
Q 008022           94 DGMEPNVFTYNILLKALCKNNRVDGAYKLLVEM----GNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF-------G  162 (581)
Q Consensus        94 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-------~  162 (581)
                      . ++.+..+|......--.+|+.+...+++++-    ...|+..+...|..=...+-..|.+-.+..+....       .
T Consensus       435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee  513 (913)
T KOG0495|consen  435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE  513 (913)
T ss_pred             h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence            5 4778888888888878889998888887754    45688888888888888888888888888877766       4


Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 008022          163 SGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLL  242 (581)
Q Consensus       163 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  242 (581)
                      .-..+|+.-.+.|.+.+.++-|..+|....+. ++-+...|......--..|..+....+|++.... ++.....|....
T Consensus       514 d~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~a  591 (913)
T KOG0495|consen  514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYA  591 (913)
T ss_pred             hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHH
Confidence            45678888899999999999999999888876 4446677777777777788899999999998876 233455566667


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHH
Q 008022          243 KGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLL  322 (581)
Q Consensus       243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  322 (581)
                      ..+...|++..|..++....+.... +...|-.-+..-..+..++.|..+|.+....  .|+...|..-+..-...++.+
T Consensus       592 ke~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~e  668 (913)
T KOG0495|consen  592 KEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVE  668 (913)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHH
Confidence            7788889999999999998887533 6677888888888999999999999888774  567777777777777788999


Q ss_pred             HHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHH
Q 008022          323 GASQIWNRMISNGCSPN-VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQM  401 (581)
Q Consensus       323 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  401 (581)
                      +|.+++++..+.  -|+ ...|..+.+.+-+.++.+.|...|..-.+. .|..+..|-.+...-.+.|++-.|..+++..
T Consensus       669 eA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra  745 (913)
T KOG0495|consen  669 EALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA  745 (913)
T ss_pred             HHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            999999988876  344 346777788899999999999998887665 4667788888888888889999999999998


Q ss_pred             hhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 008022          402 KQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAI  481 (581)
Q Consensus       402 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  481 (581)
                      .-.+ +.+...|...++.-.+.|+.+.|..+..+.++. ++.+...|..-|....+.++-......+++.     .-|+.
T Consensus       746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dph  818 (913)
T KOG0495|consen  746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPH  818 (913)
T ss_pred             HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCch
Confidence            7766 457778999999999999999999999888876 4666777777776666666644444433332     45777


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 008022          482 TFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF  551 (581)
Q Consensus       482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  551 (581)
                      .+..++..+....++++|.+.|.++..   ..|| ..+|..+...+..+|.-++-.+++.+....  .|..
T Consensus       819 Vllaia~lfw~e~k~~kar~Wf~Ravk---~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~h  884 (913)
T KOG0495|consen  819 VLLAIAKLFWSEKKIEKAREWFERAVK---KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTH  884 (913)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCC
Confidence            888888888888999999999999998   5564 557888888889999888888889888764  4553

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.87  E-value=6.6e-17  Score=139.01  Aligned_cols=462  Identities=16%  Similarity=0.163  Sum_probs=312.5

Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCChhHH-HHHHHHHhhCCCCCCcchHHHHH
Q 008022           66 KIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALC--KNNRVDGA-YKLLVEMGNKGCAPDAVSYTTIV  142 (581)
Q Consensus        66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~  142 (581)
                      .+-+.+++ ....|....+.-+|+.|.+.|++.++..-..+....+  .+.++.-| ++-|-.|.+.|-. +..+|    
T Consensus       117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW----  190 (625)
T KOG4422|consen  117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW----  190 (625)
T ss_pred             cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc----
Confidence            34444444 4567889999999999999988888777666665543  33333322 3344445544432 33344    


Q ss_pred             HHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHH
Q 008022          143 SSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGI  222 (581)
Q Consensus       143 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  222 (581)
                          +.|.+.+  -+++..|....++..+|.++++-...+.|.+++++......+.+..+||.+|.+-.-.-    ..++
T Consensus       191 ----K~G~vAd--L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~L  260 (625)
T KOG4422|consen  191 ----KSGAVAD--LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKL  260 (625)
T ss_pred             ----ccccHHH--HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHH
Confidence                3454444  45666699999999999999999999999999999998888889999999997654332    2788


Q ss_pred             HHHHHHcCCCCCcccHHHHHHHHHccCCHHH----HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh-HHHHHHHHH
Q 008022          223 LGQMFVRGCNPNIHSFTSLLKGYLLGGRTHE----ASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDE-AVSVSYQME  297 (581)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~  297 (581)
                      +.+|....+.||..|+|+++.+..+.|+++.    |.+++.+|.+.|+.|...+|..++..+++-++..+ +..++.++.
T Consensus       261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~  340 (625)
T KOG4422|consen  261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ  340 (625)
T ss_pred             HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence            9999999999999999999999999998875    56778889999999999999999999998887644 555555554


Q ss_pred             hC----C----CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCh---hhHHHHHHHHHccCChhHHHHH
Q 008022          298 EN----S----CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNG----CSPNV---VAYTCMVKVLCQNNMFHQAHSL  362 (581)
Q Consensus       298 ~~----~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~  362 (581)
                      ..    .    .+.+...|...+..|.+..+.+.|.++..-+....    +.|+.   .-|..+....++....+.....
T Consensus       341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~  420 (625)
T KOG4422|consen  341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW  420 (625)
T ss_pred             HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32    1    23456678888999999999999988877665431    22332   2356677788899999999999


Q ss_pred             HHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc
Q 008022          363 IEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQ  442 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  442 (581)
                      |+.|...-+-|+..+...++++....+.++-..+++.++...|...+......++.                .+......
T Consensus       421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~----------------~L~~~k~h  484 (625)
T KOG4422|consen  421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM----------------LLARDKLH  484 (625)
T ss_pred             HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH----------------HHhcCCCC
Confidence            99999887778999999999999999999999999999988764433333222222                22222222


Q ss_pred             ccHH---HHHHHHHHHHhcCCHHHH-HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH-
Q 008022          443 LNIV---TYNTILHGVCRAGMVVEA-FQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDII-  517 (581)
Q Consensus       443 ~~~~---~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-  517 (581)
                      |+..   -+.....-|+  -++.++ ...-.++.+.  .......+.++..+.+.|..++|.+++..+...++--|-.. 
T Consensus       485 p~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~  560 (625)
T KOG4422|consen  485 PLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPL  560 (625)
T ss_pred             CCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcc
Confidence            2211   2222222111  122222 2222333333  33455566677777778888888888877754444334333 


Q ss_pred             --hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 008022          518 --SYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFS  563 (581)
Q Consensus       518 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  563 (581)
                        +...++..-.+.+....|...++-|...+.+.-...-..+...|.-
T Consensus       561 lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~i  608 (625)
T KOG4422|consen  561 LNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAI  608 (625)
T ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCc
Confidence              3335555666777777888887777654333222233344433333

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.86  E-value=9.3e-17  Score=138.12  Aligned_cols=464  Identities=16%  Similarity=0.172  Sum_probs=262.0

Q ss_pred             HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008022            4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINS--YRRVGLAEQAL-KMFYRIREFGLKPTVKIYNHILDALLAENR   80 (581)
Q Consensus         4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (581)
                      .+..+|.+.++--+|+.|.+.|++.++.+-..+++.  |....++.-|. +.|-.|...|- .+..+|.        .|.
T Consensus       124 kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sWK--------~G~  194 (625)
T KOG4422|consen  124 KMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSWK--------SGA  194 (625)
T ss_pred             HHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-ccccccc--------ccc
Confidence            356788889999999999999988888887777664  44444444332 33333333321 1111221        111


Q ss_pred             cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHH-HHHHHH
Q 008022           81 FSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEE-ARELAM  159 (581)
Q Consensus        81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~  159 (581)
                      .  |. ++-+..    +.+..++..+|.++++.-..+.|.+++++......+.+..+|+.+|.+-.-...-+- +.-+-.
T Consensus       195 v--Ad-L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisq  267 (625)
T KOG4422|consen  195 V--AD-LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQ  267 (625)
T ss_pred             H--HH-HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHh
Confidence            1  11 222222    334445555555555555555555555555554444455555555543322211111 111122


Q ss_pred             HhCCCcchHHHHHHHHHhcCChh----HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhH-HHHHHHHHHH----cC
Q 008022          160 RFGSGVSVYNALINGLCKEHKIE----EAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVET-SLGILGQMFV----RG  230 (581)
Q Consensus       160 ~~~~~~~~~~~l~~~~~~~~~~~----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~----~~  230 (581)
                      ++.||..++|+++++..+.|+++    .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++..+..    .-
T Consensus       268 km~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~  347 (625)
T KOG4422|consen  268 KMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT  347 (625)
T ss_pred             hcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence            22555555555555555555443    467889999999999999999999999998887644 4445444432    22


Q ss_pred             CCC----CcccHHHHHHHHHccCCHHHHHHHHHHHHhCC----CCCCH---HhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 008022          231 CNP----NIHSFTSLLKGYLLGGRTHEASDLWNRMIREG----FLPNV---VAYSTLIHGLCSNGSMDEAVSVSYQMEEN  299 (581)
Q Consensus       231 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  299 (581)
                      ++|    |..-+...+..|....+.+-|.++-.-+....    +.|+.   .-|..+....+.....+.....|..|...
T Consensus       348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~  427 (625)
T KOG4422|consen  348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS  427 (625)
T ss_pred             ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            333    34456677888888888888887765544321    22332   34667778888888999999999999988


Q ss_pred             CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHH
Q 008022          300 SCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFN  379 (581)
Q Consensus       300 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  379 (581)
                      -.-|+..+...++++....+.++-.-++|.+++..|...+......++..+++..                ..|+...-.
T Consensus       428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k----------------~hp~tp~r~  491 (625)
T KOG4422|consen  428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK----------------LHPLTPERE  491 (625)
T ss_pred             eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC----------------CCCCChHHH
Confidence            7888999999999999999999999999999988765444433333333333322                112111111


Q ss_pred             HHHHHhhcC-CCh-HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----cccHHHHHHHHH
Q 008022          380 TFIKGLCGC-GRV-DWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGI----QLNIVTYNTILH  453 (581)
Q Consensus       380 ~l~~~~~~~-~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~  453 (581)
                      .+-.+..+. -++ +.....-.++.+..  ......+.++..+.+.|..++|.+++..+.+.+-    .|.......+++
T Consensus       492 Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d  569 (625)
T KOG4422|consen  492 QLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD  569 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence            111111110 011 11122222333333  3344555666666777777777777777654321    122223334555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 008022          454 GVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQ  501 (581)
Q Consensus       454 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  501 (581)
                      .-.+.+++..|..+++-+...+.+.-...-+.+...|.-.....+++.
T Consensus       570 ~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls  617 (625)
T KOG4422|consen  570 SAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS  617 (625)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence            556667777777777777655433222233444444433333333333

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.85  E-value=1.6e-15  Score=142.93  Aligned_cols=367  Identities=10%  Similarity=0.051  Sum_probs=273.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022           31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKAL  110 (581)
Q Consensus        31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (581)
                      ......++.....|+.++|.+++.++++..+ .+...|..+...|-+.|+.+++...+-.+.... +.|...|..+....
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls  217 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            3344445556777999999999999998665 677899999999999999999999887777765 66778999999999


Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CC-Ccch----HHHHHHHHHhcCCh
Q 008022          111 CKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GS-GVSV----YNALINGLCKEHKI  181 (581)
Q Consensus       111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~-~~~~----~~~l~~~~~~~~~~  181 (581)
                      .+.|++++|.-.|.+.++.. +++....-.-+..|-+.|+...|...+.++    |+ +..-    --..++.+...++-
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~  296 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER  296 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999999983 334444555678899999999999999988    31 1121    22346677788888


Q ss_pred             hHHHHHHHHHHHC-CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCC---------------------------C
Q 008022          182 EEAFWLLCEMVDR-GIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCN---------------------------P  233 (581)
Q Consensus       182 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------------------------~  233 (581)
                      +.|.+.++..... +-..+...++.++..+.+...++.+.............                           +
T Consensus       297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~  376 (895)
T KOG2076|consen  297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY  376 (895)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence            9999999887763 22345667888999999999999998888777652111                           1


Q ss_pred             CcccHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHH
Q 008022          234 NIHSFTSLLKGYLLGGRTHEASDLWNRMIREG--FLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSAL  311 (581)
Q Consensus       234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  311 (581)
                      +... ..++-++......+....+..-+....  +.-+...|..+..+|...|++.+|+.++..+.....-.+...|-.+
T Consensus       377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~  455 (895)
T KOG2076|consen  377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL  455 (895)
T ss_pred             cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence            2222 112222333344444444444455554  3334566888999999999999999999999987666678899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhC--------CCCCChhhHHHHHH
Q 008022          312 IDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE--------NCPPNTVTFNTFIK  383 (581)
Q Consensus       312 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~  383 (581)
                      .++|...|.++.|.+.|+..+...+. +......|...+.+.|+.++|.+.++.+...        ..+|+.........
T Consensus       456 a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d  534 (895)
T KOG2076|consen  456 ARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD  534 (895)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence            99999999999999999999887432 4556677888899999999999999986522        23344445555666


Q ss_pred             HhhcCCChHHHHHHHHHHh
Q 008022          384 GLCGCGRVDWAMKLLDQMK  402 (581)
Q Consensus       384 ~~~~~~~~~~a~~~~~~~~  402 (581)
                      .+...|+.++-..+...|.
T Consensus       535 ~l~~~gk~E~fi~t~~~Lv  553 (895)
T KOG2076|consen  535 ILFQVGKREEFINTASTLV  553 (895)
T ss_pred             HHHHhhhHHHHHHHHHHHH
Confidence            7778888777655555443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=5e-15  Score=129.28  Aligned_cols=382  Identities=14%  Similarity=0.126  Sum_probs=164.2

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCcchHHH
Q 008022            8 KCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVK-IYNHILDALLAENRFSMINP   86 (581)
Q Consensus         8 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~   86 (581)
                      +++++.|..+|++.+..+.. +...|...+..-.++.....|+.+++++...-  |.+. .|...+..--..|+...|.+
T Consensus        86 q~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRq  162 (677)
T KOG1915|consen   86 QKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQ  162 (677)
T ss_pred             HHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHH
Confidence            44455555555555554422 45555555555555555555555555555422  2221 33333333344455555555


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-----
Q 008022           87 IYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF-----  161 (581)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----  161 (581)
                      +|+...+.  .|+...|++.|..-.+.+..+.|..+++..+-.  .|++.+|......--+.|....+..++...     
T Consensus       163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~  238 (677)
T KOG1915|consen  163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG  238 (677)
T ss_pred             HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence            55555544  455555555555555555555555555555443  345555555555555555555555555444     


Q ss_pred             --CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--cccHHHHHHHHHccCChhHHHHH--------HHHHHHc
Q 008022          162 --GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPN--VITYSTIISSLCDVGNVETSLGI--------LGQMFVR  229 (581)
Q Consensus       162 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--------~~~~~~~  229 (581)
                        ..+...+++....-.++..++.|..+|.-.... ++.+  ...|..+...--+.|+.......        ++...+.
T Consensus       239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~  317 (677)
T KOG1915|consen  239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK  317 (677)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence              111223333333334444455555555444443 1111  11222222222223332222211        1222222


Q ss_pred             CCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-H-hHHHHHHH--------HHhcCChhhHHHHHHHHHhC
Q 008022          230 GCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNV-V-AYSTLIHG--------LCSNGSMDEAVSVSYQMEEN  299 (581)
Q Consensus       230 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~  299 (581)
                      + +-|-.+|-..++.-...|+.+...++|++....- +|-. . .|...+..        -....+.+.+.++++...+.
T Consensus       318 n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l  395 (677)
T KOG1915|consen  318 N-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL  395 (677)
T ss_pred             C-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            2 2334444444444444455555555555544431 2211 0 11111110        11234444444444444442


Q ss_pred             CCCCcHHhHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCh
Q 008022          300 SCPPNVTTYSALIDGF----AKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNT  375 (581)
Q Consensus       300 ~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  375 (581)
                       +|....||..+--.|    .++.++..|.+++...+  |..|-..++...|..-.+.++++.+..++++.+.-+ |.+.
T Consensus       396 -IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c  471 (677)
T KOG1915|consen  396 -IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENC  471 (677)
T ss_pred             -cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhh
Confidence             233333333322222    23344444444444433  223444444444444444444455555554444443 3344


Q ss_pred             hhHHHHHHHhhcCCChHHHHHHHHHHhh
Q 008022          376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQ  403 (581)
Q Consensus       376 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~  403 (581)
                      .+|......-...|+.+.|..+|....+
T Consensus       472 ~~W~kyaElE~~LgdtdRaRaifelAi~  499 (677)
T KOG1915|consen  472 YAWSKYAELETSLGDTDRARAIFELAIS  499 (677)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence            4444444444444445555444444443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=2.5e-15  Score=131.17  Aligned_cols=435  Identities=11%  Similarity=0.058  Sum_probs=200.4

Q ss_pred             CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCc-chHHHH
Q 008022           63 PTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDA-VSYTTI  141 (581)
Q Consensus        63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l  141 (581)
                      .+...|....+--...+++..|..+|+.++... ..+...|...+..-.+++.+..|..++++.+..  -|.+ ..|...
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY  147 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY  147 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence            344444444444445566666666666666544 344555556666666666666666666666554  2222 123333


Q ss_pred             HHHHHccCCHHHHHHHHHHh---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhH
Q 008022          142 VSSICKLGQVEEARELAMRF---GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVET  218 (581)
Q Consensus       142 ~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  218 (581)
                      +.+--..|++..|.++|++.   .|+..+|++.+..-.+.+.++.|..+++...-.  .|+..+|......-.+.|....
T Consensus       148 ~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~  225 (677)
T KOG1915|consen  148 IYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL  225 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence            34444556666666666655   566666666666666666666666666665543  4566666555555556666666


Q ss_pred             HHHHHHHHHHcCCC--CCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCChhhHHHH---
Q 008022          219 SLGILGQMFVRGCN--PNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPN-VVAYSTLIHGLCSNGSMDEAVSV---  292 (581)
Q Consensus       219 a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~---  292 (581)
                      +..+|+...+.-..  .+...+.+....-..+..++.|.-+|.-.+..-+... ...|..+...--+-|+.....+.   
T Consensus       226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~  305 (677)
T KOG1915|consen  226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG  305 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence            66666655543100  0112222222222334445555555555444311111 12233333222233333222221   


Q ss_pred             -----HHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHH--------HHccCChh
Q 008022          293 -----SYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVV--AYTCMVKV--------LCQNNMFH  357 (581)
Q Consensus       293 -----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~~~~~  357 (581)
                           ++.+.+.+ |.|-.+|-..++.-...|+.+...++|++.+.. ++|-..  .|...+..        -....+.+
T Consensus       306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~e  383 (677)
T KOG1915|consen  306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVE  383 (677)
T ss_pred             hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence                 11222221 334445555555555555555555555555543 222110  11111111        11234445


Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHHh----hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008022          358 QAHSLIEKMAFENCPPNTVTFNTFIKGL----CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELV  433 (581)
Q Consensus       358 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  433 (581)
                      .+.++++..++. +|....+|..+--+|    .++.+...|.+++-....  ..|..-++...+..-.+.++++.+..++
T Consensus       384 rtr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLY  460 (677)
T KOG1915|consen  384 RTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLY  460 (677)
T ss_pred             HHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHH
Confidence            555555554442 333344443332222    233444555555444332  2344444444444444555555555555


Q ss_pred             HHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          434 TEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG-TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       434 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +..++.+ |.+..+|......=...|+.+.|..+|.-++... .......|...+..-...|.+++|..+++++.+
T Consensus       461 Ekfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~  535 (677)
T KOG1915|consen  461 EKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD  535 (677)
T ss_pred             HHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence            5555443 3344444444444444455555555555444431 011112233333333444555555555555544

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=2.7e-16  Score=136.48  Aligned_cols=485  Identities=12%  Similarity=0.060  Sum_probs=286.2

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCChhHHHHHHHHHhhCCCCCCcc----hHHHHH
Q 008022           68 YNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYN-ILLKALCKNNRVDGAYKLLVEMGNKGCAPDAV----SYTTIV  142 (581)
Q Consensus        68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~  142 (581)
                      ...+.+-|..+....+|+..|+-+.+..+-|+..... .+...+.+...+.+|++.++-....-...+..    ..+.+.
T Consensus       204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig  283 (840)
T KOG2003|consen  204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG  283 (840)
T ss_pred             HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence            3344455555556667777777777766556654332 34556667777777777777665541111111    223333


Q ss_pred             HHHHccCCHHHHHHHHHHh---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccH--------HHHHHHHH
Q 008022          143 SSICKLGQVEEARELAMRF---GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITY--------STIISSLC  211 (581)
Q Consensus       143 ~~~~~~g~~~~a~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~  211 (581)
                      -.+.+.|+++.|+..|+..   .|+..+-..|+-++..-|+.++..+.|.+|......||..-|        ..|+.-..
T Consensus       284 vtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai  363 (840)
T KOG2003|consen  284 VTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAI  363 (840)
T ss_pred             eeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHH
Confidence            3456667777777777665   444444444555555667777777777777655322332211        11221111


Q ss_pred             ccCCh--------hHHHHHH---HHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 008022          212 DVGNV--------ETSLGIL---GQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGL  280 (581)
Q Consensus       212 ~~g~~--------~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  280 (581)
                      +...+        ..|.+.+   -+++.--+.|+-          . .| .+-.++.+..-....+..+..  -.-...+
T Consensus       364 ~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f----------a-~g-~dwcle~lk~s~~~~la~dle--i~ka~~~  429 (840)
T KOG2003|consen  364 KNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF----------A-AG-CDWCLESLKASQHAELAIDLE--INKAGEL  429 (840)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch----------h-cc-cHHHHHHHHHhhhhhhhhhhh--hhHHHHH
Confidence            11100        0111111   001100011110          0 00 000111111110000000000  1112346


Q ss_pred             HhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHH-h-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 008022          281 CSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFA-K-AGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQ  358 (581)
Q Consensus       281 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  358 (581)
                      .+.|+++.|++++.-+.+..-+.....-+.+...+. + ..++..|.+.-+....... -+......-...-...|++++
T Consensus       430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dk  508 (840)
T KOG2003|consen  430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDK  508 (840)
T ss_pred             HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHH
Confidence            788999999998888776643322222333332222 2 3346666666665544321 133333323333455789999


Q ss_pred             HHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022          359 AHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEK  438 (581)
Q Consensus       359 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  438 (581)
                      |...+++............| .+.-.+...|+.++|++.|-++... +..+...+..+...|....++..|++++-+...
T Consensus       509 a~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s  586 (840)
T KOG2003|consen  509 AAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS  586 (840)
T ss_pred             HHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence            99999998765322222222 2333466778999999988776432 124667777888888889999999999988876


Q ss_pred             cCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHh
Q 008022          439 CGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIIS  518 (581)
Q Consensus       439 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~  518 (581)
                      . ++.|+..+..|...|-+.|+-.+|.+++-.--+. ++.+..+...|..-|....-+++|+.+|+++.-   +.|+..-
T Consensus       587 l-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal---iqp~~~k  661 (840)
T KOG2003|consen  587 L-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL---IQPNQSK  661 (840)
T ss_pred             c-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh---cCccHHH
Confidence            5 6778899999999999999999999887665554 466888889999999999999999999999876   7799999


Q ss_pred             HHHHHHHH-HccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHH
Q 008022          519 YTSLLWGI-CNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDD  576 (581)
Q Consensus       519 ~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  576 (581)
                      |..++..| .+.|++.+|+.+|+..... ++.|...+..+++.+...| ..++.++-++
T Consensus       662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg-l~d~key~~k  718 (840)
T KOG2003|consen  662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG-LKDAKEYADK  718 (840)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc-chhHHHHHHH
Confidence            98777665 4679999999999998764 6677788877777666644 4455555444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=7.1e-17  Score=139.96  Aligned_cols=479  Identities=14%  Similarity=0.089  Sum_probs=320.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCcchHHHHHHHHHhCCCCCCh----hh
Q 008022           28 CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNH-ILDALLAENRFSMINPIYSNMKRDGMEPNV----FT  102 (581)
Q Consensus        28 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~  102 (581)
                      .+..++..+.+.|..+..+.+|+..++-+.+....|+...... +...+.+.+++..|++.|+..+..-...+-    .+
T Consensus       199 ltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~riki  278 (840)
T KOG2003|consen  199 LTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKI  278 (840)
T ss_pred             chHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHH
Confidence            4556777788889999999999999999988766677665433 446788889999999999988765211111    23


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh---C--CC--------cchHH
Q 008022          103 YNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF---G--SG--------VSVYN  169 (581)
Q Consensus       103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~--~~--------~~~~~  169 (581)
                      .+.+...+.+.|.++.|+..|+...+.  .|+-.+-..|+-++...|+.++..+.|.++   |  ++        ...-.
T Consensus       279 l~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~  356 (840)
T KOG2003|consen  279 LNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD  356 (840)
T ss_pred             HhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence            455555678999999999999998876  567767667788888899999999999988   1  11        11111


Q ss_pred             HHHHHHHhcC---------C--hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccH
Q 008022          170 ALINGLCKEH---------K--IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSF  238 (581)
Q Consensus       170 ~l~~~~~~~~---------~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  238 (581)
                      .|+.--.++.         .  .++++-.--++...-+.|+   |.         -..+.+++.++.-....+..+  .-
T Consensus       357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~---fa---------~g~dwcle~lk~s~~~~la~d--le  422 (840)
T KOG2003|consen  357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD---FA---------AGCDWCLESLKASQHAELAID--LE  422 (840)
T ss_pred             HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc---hh---------cccHHHHHHHHHhhhhhhhhh--hh
Confidence            2222211111         1  1112211111111111111   10         011233333322211100101  11


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh--cCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 008022          239 TSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCS--NGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFA  316 (581)
Q Consensus       239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (581)
                      ..-.-.+.++|+++.|++++.-+.+.+.+.....-+.|-..+.-  ..++..|...-....... ..++.....-.....
T Consensus       423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f  501 (840)
T KOG2003|consen  423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAF  501 (840)
T ss_pred             hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceee
Confidence            11233477899999999999888776433333333333333322  345777777666655432 334444333344445


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHH
Q 008022          317 KAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMK  396 (581)
Q Consensus       317 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  396 (581)
                      ..|+++.|.+.|++............|+ +.-.+...|+.++|++.|-++... +..+...+..+...|....++..|++
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie  579 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE  579 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence            6799999999999988753221122222 223466789999999999887654 24577888888999999999999999


Q ss_pred             HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008022          397 LLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT  476 (581)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  476 (581)
                      ++.+..+. ++.|+..+..|...|-+.|+-..|.+.+-+--+. ++.+..+...|...|....-+++++.+|++..-  +
T Consensus       580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i  655 (840)
T KOG2003|consen  580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I  655 (840)
T ss_pred             HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence            99887654 3567788899999999999999999887765554 577888888888888888899999999999876  5


Q ss_pred             CcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCC
Q 008022          477 KLDAITFNIIIYA-YCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGG  531 (581)
Q Consensus       477 ~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  531 (581)
                      .|+..-|..++.. +.+.|++++|.++++....++  +.|..++.-|++.+...|.
T Consensus       656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf--pedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF--PEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--ccchHHHHHHHHHhccccc
Confidence            8899999887754 556899999999999998744  3478888888888887774

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=2e-13  Score=115.04  Aligned_cols=490  Identities=11%  Similarity=0.056  Sum_probs=311.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 008022           37 INSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRV  116 (581)
Q Consensus        37 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (581)
                      +.-+....++..|+.+++.-...+-.....+-..+..++...|++++|...|..+.... .++...+..+.-...-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            33445577888888888877654433333344556677788899999998888887765 56666666777666777888


Q ss_pred             hHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 008022          117 DGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGI  196 (581)
Q Consensus       117 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  196 (581)
                      .+|..+-....+     ++.....++....+.|+-++...+.+.+.....--.+|.......-.+.+|++++......  
T Consensus       108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--  180 (557)
T KOG3785|consen  108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--  180 (557)
T ss_pred             HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            888877665433     4445556667777888888888777777666666677777777778889999999988876  


Q ss_pred             CCCcccHHHHH-HHHHccCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHH
Q 008022          197 DPNVITYSTII-SSLCDVGNVETSLGILGQMFVRGCNPN-IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYS  274 (581)
Q Consensus       197 ~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  274 (581)
                      .|.-...+.-+ -+|.+..-++-+.+++.-..+.  .|| ..+.+..+....+.=.-..|.+-...+...+-. .   | 
T Consensus       181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~---~-  253 (557)
T KOG3785|consen  181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E---Y-  253 (557)
T ss_pred             ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c---c-
Confidence            34444445433 4556777788888888877766  344 444444433333322223344444444443211 1   1 


Q ss_pred             HHHHHHHhc-----CChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 008022          275 TLIHGLCSN-----GSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKV  349 (581)
Q Consensus       275 ~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  349 (581)
                      ..+.-+++.     ..-+.|++++-.+.+.    -+..-..++-.|.+.++..+|..+.+++...  .|-......++.+
T Consensus       254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~a  327 (557)
T KOG3785|consen  254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFA  327 (557)
T ss_pred             hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHH
Confidence            122223333     3456777777666654    2233445666788999999999888776432  2222222222222


Q ss_pred             H-----HccCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 008022          350 L-----CQNNMFHQAHSLIEKMAFENCPPN-TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRV  423 (581)
Q Consensus       350 ~-----~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  423 (581)
                      -     .......-|...|+-.-.++...| ...-..+..++.-..++++++-.++.+...-...|...+ .+..+++..
T Consensus       328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~at  406 (557)
T KOG3785|consen  328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLAT  406 (557)
T ss_pred             HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHh
Confidence            1     112234556666666555543333 334456666777778899999999999886655555555 467889999


Q ss_pred             CCHHHHHHHHHHHHHcCCcccHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCHHHHHH
Q 008022          424 NRVKEAFELVTEIEKCGIQLNIVTY-NTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA-ITFNIIIYAYCKQGKVNNAIQ  501 (581)
Q Consensus       424 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~  501 (581)
                      |++.+|.++|-.+....++ |..+| ..+.++|.+.+.++.|+.++-++-.   +.+. ..+..+++-|.+.+.+--|.+
T Consensus       407 gny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaK  482 (557)
T KOG3785|consen  407 GNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAK  482 (557)
T ss_pred             cChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888765444 44455 5567788899999999887755532   2233 334556688999999999999


Q ss_pred             HHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhc
Q 008022          502 LLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSLFSN  564 (581)
Q Consensus       502 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  564 (581)
                      .|+.+..   +.|+++.|         .|+......+|..+....-.|- ......++..+..+
T Consensus       483 AFd~lE~---lDP~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~  534 (557)
T KOG3785|consen  483 AFDELEI---LDPTPENW---------EGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMK  534 (557)
T ss_pred             hhhHHHc---cCCCcccc---------CCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhC
Confidence            9999888   67888776         3444455556666655433332 23444555444443

>TIGR00540 hemY_coli hemY protein

Probab=99.75  E-value=7e-15  Score=138.02  Aligned_cols=294  Identities=12%  Similarity=0.044  Sum_probs=158.2

Q ss_pred             hcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 008022          282 SNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHS  361 (581)
Q Consensus       282 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  361 (581)
                      ..|+++.|.+.+.+..+.. +.....+-....+....|+++.+.+.+.+..+....+...........+...|+++.|..
T Consensus        96 ~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~  174 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH  174 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence            3566666666665555432 111222333345555666666666666666544222222223334555666666666666


Q ss_pred             HHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHH-HHHH---HHHhcCCHHHHHHHHHHHH
Q 008022          362 LIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYN-ELLD---GLLRVNRVKEAFELVTEIE  437 (581)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~~~~~~a~~~~~~~~  437 (581)
                      .++.+.+.. |.++..+..+...+...|+++.|.+.+..+.+.++. +...+. .-..   .....+..+++.+.+..+.
T Consensus       175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            666666654 455566666666666667777676666666665432 222221 1111   1122222222333444443


Q ss_pred             HcC---CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 008022          438 KCG---IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAIT-FNIIIYAYCKQGKVNNAIQLLDRIRGGGEWN  513 (581)
Q Consensus       438 ~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  513 (581)
                      +..   .+.++..+..+...+...|+.++|.+.+++.++......... ...........++.+.+.+.+++..+..+-+
T Consensus       253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~  332 (409)
T TIGR00540       253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK  332 (409)
T ss_pred             HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence            321   113566666666777777777777777777776532111111 0111112233466677777777766633222


Q ss_pred             CCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022          514 PDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM  578 (581)
Q Consensus       514 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  578 (581)
                      |+.....++++.+.+.|++++|.++|++.......|+...+.++...+.+.|+.++|.+++++.+
T Consensus       333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            22145567777777777777777777743332245776666677777777777777777777654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=3.4e-14  Score=124.74  Aligned_cols=223  Identities=16%  Similarity=0.106  Sum_probs=181.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHH
Q 008022          315 FAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWA  394 (581)
Q Consensus       315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  394 (581)
                      +.-.|+.-.+..-|+..++....++. .|..+...|...++.++-...|.+....+ |.++.+|..-.+.+.-.++++.|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence            44578889999999999887544332 37777888999999999999999998876 77888898888888889999999


Q ss_pred             HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022          395 MKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE  474 (581)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  474 (581)
                      ..-|++..+.. +.+...|..+..+..+.++++++...|++.+++ +|.-+..|+.....+...+++++|.+.|+..+..
T Consensus       414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L  491 (606)
T KOG0547|consen  414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL  491 (606)
T ss_pred             HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence            99999998876 345667777777778899999999999999987 5777889999999999999999999999999876


Q ss_pred             CCC-----cCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          475 GTK-----LDAITFNIIIYA-YCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       475 ~~~-----~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      ...     .+...+..-+.. +.-.+++..|.+++.++.+   +.| ....+.+|+..-.+.|+.++|+++|++...
T Consensus       492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            311     122222211111 1124899999999999999   678 566899999999999999999999999865

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.73  E-value=1.8e-14  Score=134.38  Aligned_cols=283  Identities=10%  Similarity=0.002  Sum_probs=151.0

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHhHH-HHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHH--HHHHHHHhcCCHHHH
Q 008022          248 GGRTHEASDLWNRMIREGFLPNVVAYS-TLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYS--ALIDGFAKAGNLLGA  324 (581)
Q Consensus       248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a  324 (581)
                      .|+++.|.+.+....+..  +++..+. ....+..+.|+++.|...+.++.+.  .|+.....  .....+...|+++.|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            566776666665544431  1222222 2233335666666666666666653  23332221  224455666666666


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChh-------hHHHHHHHhhcCCChHHHHHH
Q 008022          325 SQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTV-------TFNTFIKGLCGCGRVDWAMKL  397 (581)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~  397 (581)
                      ...++.+.+..+. ++.....+...|.+.|+|++|..++..+.+....++..       .+..++.......+.+...++
T Consensus       173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~  251 (398)
T PRK10747        173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW  251 (398)
T ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            6666666665422 45555666666666666666666666666554321111       112222222233344444555


Q ss_pred             HHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008022          398 LDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK  477 (581)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  477 (581)
                      ++.+...- +.+......+...+...|+.++|.+++++..+.  ++++....  +.+....++.+++.+..++..+.. +
T Consensus       252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~-P  325 (398)
T PRK10747        252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH-G  325 (398)
T ss_pred             HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC-C
Confidence            55443321 234455555666666666666666666666553  33442221  222233466666666666666553 3


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          478 LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       478 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      .|+..+..++..|.+.|++++|.+.|+++.+   ..|+...+..+...+.+.|+.++|..++++.+.
T Consensus       326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3455556666666666666666666666665   456666666666666666666666666665543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.72  E-value=5e-17  Score=145.03  Aligned_cols=262  Identities=15%  Similarity=0.084  Sum_probs=93.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcC
Q 008022          310 ALIDGFAKAGNLLGASQIWNRMISNG-CSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGC  388 (581)
Q Consensus       310 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  388 (581)
                      .+...+.+.|++++|.++++...... .+.|...|..+.......++++.|...++++...+ +.++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence            34555666677777777775443332 12234444445555566677777777777776654 3355556666665 566


Q ss_pred             CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHHHhcCCHHHHHHH
Q 008022          389 GRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCG-IQLNIVTYNTILHGVCRAGMVVEAFQL  467 (581)
Q Consensus       389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~  467 (581)
                      +++++|.+++....+..  ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|++++|++.
T Consensus        91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            77777777776654432  455556666677777777777777777765432 244666677777777778888888888


Q ss_pred             HHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 008022          468 LGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGI  547 (581)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  547 (581)
                      ++++++.. +.|......++..+...|+.+++.++++......  ++|+..+..++.+|...|+.++|+.+|++..+. .
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~  244 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-N  244 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-S
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccc-c
Confidence            88887764 3356677777777777888887777777766622  235556677777788888888888888887764 2


Q ss_pred             CCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          548 CPNFATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       548 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      +.|+.....+..++...|+.++|.++.+++++
T Consensus       245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             TT-HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccccc
Confidence            34566677777788888888888877777654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=7.2e-13  Score=118.86  Aligned_cols=481  Identities=14%  Similarity=0.059  Sum_probs=251.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022           29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK  108 (581)
Q Consensus        29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (581)
                      +.+-+..+.+-+..+.++.-|.-+-+++...+  .++...-.+++.+.-.|+++.|..+...-.-.  ..|..+......
T Consensus        15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~   90 (611)
T KOG1173|consen   15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK   90 (611)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence            34445555555566666666666666665544  44444455566666667777666665544322  445556666666


Q ss_pred             HHHhcCChhHHHHHHHHH----hhC---------CCCCCcch----HHH-------HHHHHHccCCHHHHHHHHHHh-CC
Q 008022          109 ALCKNNRVDGAYKLLVEM----GNK---------GCAPDAVS----YTT-------IVSSICKLGQVEEARELAMRF-GS  163 (581)
Q Consensus       109 ~~~~~~~~~~a~~~~~~~----~~~---------~~~~~~~~----~~~-------l~~~~~~~g~~~~a~~~~~~~-~~  163 (581)
                      ++.+..++++|..++...    ...         -+.+|..-    .+.       -...|....+.++|...+.+. ..
T Consensus        91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~  170 (611)
T KOG1173|consen   91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA  170 (611)
T ss_pred             HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence            666777777776666621    100         00111110    000       012233344455666655554 33


Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHH
Q 008022          164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDRGI----DPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFT  239 (581)
Q Consensus       164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  239 (581)
                      +...+.++...-..  ..-.+.+.++.+.....    ..+......+.....-...-+.....-.+..-.+...+.....
T Consensus       171 D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~  248 (611)
T KOG1173|consen  171 DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA  248 (611)
T ss_pred             chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence            33333222211100  01111111222211100    0011111111111100000000000000000011233344444


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 008022          240 SLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAG  319 (581)
Q Consensus       240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  319 (581)
                      .-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+-.++.+. .|..+.+|-.+.-.|...|
T Consensus       249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~  326 (611)
T KOG1173|consen  249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG  326 (611)
T ss_pred             HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence            45556666777777777777777653 334445555556777777777666666666664 3556677777777777777


Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHH
Q 008022          320 NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLD  399 (581)
Q Consensus       320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  399 (581)
                      ..++|++.|.+....+.. =...|-.+...|.-.+..++|...+....+.- +-....+--+.--|.+.++.+.|.++|.
T Consensus       327 k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~  404 (611)
T KOG1173|consen  327 KYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFK  404 (611)
T ss_pred             CcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence            777777777776554221 13356666777777777777777776665431 2222222233344666677777777777


Q ss_pred             HHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022          400 QMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC----G--IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLI  473 (581)
Q Consensus       400 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  473 (581)
                      +..... +.|+..++-+.-.....+.+.+|..+|+.....    +  ..--..+++.|..+|.+.+.+++|+..+++.+.
T Consensus       405 ~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~  483 (611)
T KOG1173|consen  405 QALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL  483 (611)
T ss_pred             HHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            766543 334555555555555666777777777765521    0  001233466677777777777777777777776


Q ss_pred             CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHH
Q 008022          474 EGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLW  524 (581)
Q Consensus       474 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~  524 (581)
                      .. +.+..++..++..|...|+++.|++.|.+..-   +.|+..+-..++.
T Consensus       484 l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~---l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  484 LS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA---LKPDNIFISELLK  530 (611)
T ss_pred             cC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh---cCCccHHHHHHHH
Confidence            53 45666777777777777777777777777766   5665544444433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.72  E-value=3.7e-11  Score=109.64  Aligned_cols=519  Identities=12%  Similarity=0.101  Sum_probs=257.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022           32 VFISVINSYRRVGLAEQALKMFYRIRE-FGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKAL  110 (581)
Q Consensus        32 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (581)
                      +|...+..+..+|+...-+..|++.+. ..+.....+|...++.....+-++.+..+|++-++.    ++..-+-.|..+
T Consensus       104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L  179 (835)
T KOG2047|consen  104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYL  179 (835)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHH
Confidence            333344444555555555555555543 222233334555555555555555555555555532    222244445555


Q ss_pred             HhcCChhHHHHHHHHHhhCC------CCCCcchHHHHHHHHHccCCH---HHHHHHHHHh-----CCCcchHHHHHHHHH
Q 008022          111 CKNNRVDGAYKLLVEMGNKG------CAPDAVSYTTIVSSICKLGQV---EEARELAMRF-----GSGVSVYNALINGLC  176 (581)
Q Consensus       111 ~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~-----~~~~~~~~~l~~~~~  176 (581)
                      ...++.++|-+.+.......      .+.+-..|..+.+...+.-+.   -....+++..     ..-...|.+|...|+
T Consensus       180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYI  259 (835)
T KOG2047|consen  180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYI  259 (835)
T ss_pred             HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHH
Confidence            55555555555555544321      111222333333333322111   1111122221     111234677777777


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC----------------------hhHHHHHHHHHHHcCC---
Q 008022          177 KEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGN----------------------VETSLGILGQMFVRGC---  231 (581)
Q Consensus       177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~~~~~~~~~---  231 (581)
                      +.|.++.|..+|++..+.  .....-|..+.+.|+....                      ++.....|+.+.....   
T Consensus       260 r~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l  337 (835)
T KOG2047|consen  260 RSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL  337 (835)
T ss_pred             HhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence            777777777777776654  2234445555555442211                      1122222333222210   


Q ss_pred             --------CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-----C-HHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 008022          232 --------NPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLP-----N-VVAYSTLIHGLCSNGSMDEAVSVSYQME  297 (581)
Q Consensus       232 --------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~  297 (581)
                              +.+...|..  +.-...|+..+....|.+..+. +.|     . ...|..+...|-..|+++.|..+|++..
T Consensus       338 NsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~  414 (835)
T KOG2047|consen  338 NSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT  414 (835)
T ss_pred             HHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence                    001111111  1112345555666666666554 111     1 1236666777777788888887777776


Q ss_pred             hCCCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----------C------ChhhHHHHHHHHHccCChh
Q 008022          298 ENSCPPN---VTTYSALIDGFAKAGNLLGASQIWNRMISNGCS-----------P------NVVAYTCMVKVLCQNNMFH  357 (581)
Q Consensus       298 ~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~  357 (581)
                      +-+.+.-   ..+|..-...-.++.+++.|.++.++.....-.           +      +...|..++...-..|-++
T Consensus       415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe  494 (835)
T KOG2047|consen  415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE  494 (835)
T ss_pred             cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence            6543322   334555555555667777777777665432111           0      1223444444444556677


Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHh---cCCHHHHHHHH
Q 008022          358 QAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNIT-TYNELLDGLLR---VNRVKEAFELV  433 (581)
Q Consensus       358 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---~~~~~~a~~~~  433 (581)
                      ....+++++....+ .++...-.....+....-++++.++|++-...-..|+.. .|+..+.-+.+   ...++.|..+|
T Consensus       495 stk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF  573 (835)
T KOG2047|consen  495 STKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF  573 (835)
T ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            77777777766543 233332223333444555677777777665554445543 56655555443   23678888888


Q ss_pred             HHHHHcCCcccHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 008022          434 TEIEKCGIQLNIVT--YNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVNNAIQLLDRIRGG  509 (581)
Q Consensus       434 ~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  509 (581)
                      ++.++ |.+|...-  |......=.+-|-...|+++++++... +++.  ...|+.++.--...=-+..-..+++++++ 
T Consensus       574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe-  650 (835)
T KOG2047|consen  574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE-  650 (835)
T ss_pred             HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH-
Confidence            88887 45554322  222222222457777788888886654 2322  23455555444433344455667777776 


Q ss_pred             CCCCCCHHhHHH---HHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhccC
Q 008022          510 GEWNPDIISYTS---LLWGICNSGGMQEAFIYLQKMLNEGICP--NFATWNVLVRSLFSNLG  566 (581)
Q Consensus       510 ~~~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~  566 (581)
                        .-|+..+-..   ....-.+.|..+.|..+|....+. .+|  +...|...=.--.+-|+
T Consensus       651 --~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn  709 (835)
T KOG2047|consen  651 --SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN  709 (835)
T ss_pred             --hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence              3455443322   233345677888888877766543 223  33444444444455555

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=3.1e-12  Score=111.93  Aligned_cols=369  Identities=13%  Similarity=0.057  Sum_probs=233.3

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHH--HHHHHHHccCCH
Q 008022          174 GLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFT--SLLKGYLLGGRT  251 (581)
Q Consensus       174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~  251 (581)
                      .+.+.|....|+..|......    -+..|...+....-.-+.+.+..+    . .+.+.+...+.  .+..++-.....
T Consensus       173 v~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~~~a~~el~q~  243 (559)
T KOG1155|consen  173 VLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFLKKAYQELHQH  243 (559)
T ss_pred             HHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHHHHHHHHHHHH
Confidence            344566666777776666554    233344333332222222222211    1 11122211111  123344445566


Q ss_pred             HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCcHHhHHHHHHHHHhcCCHHH-HHHHH
Q 008022          252 HEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSC--PPNVTTYSALIDGFAKAGNLLG-ASQIW  328 (581)
Q Consensus       252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~-a~~~~  328 (581)
                      +++..-.......|.+.+...-+....+.....|+++|+.+|+++.+...  -.|..+|+.++-.-.......- |..++
T Consensus       244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~  323 (559)
T KOG1155|consen  244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS  323 (559)
T ss_pred             HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence            67777777777777665555555555666677788888888888887631  1356677776643322222111 11111


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCC
Q 008022          329 NRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLP  408 (581)
Q Consensus       329 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  408 (581)
                       .+-    .-.+.|...+.+-|.-.++.++|...|+...+.+ |.....|+.+..-|....+...|++-++...+.+ +.
T Consensus       324 -~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~  396 (559)
T KOG1155|consen  324 -NID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PR  396 (559)
T ss_pred             -Hhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-ch
Confidence             111    1234566667777777888888888888888776 5566777778888888888888888888888766 45


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022          409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIY  488 (581)
Q Consensus       409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  488 (581)
                      |...|-.+.++|.-.+.+.=|+-.|++..+.. |.|...|..|..+|.+.++.++|++.|.+....| ..+...+..+++
T Consensus       397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~Lak  474 (559)
T KOG1155|consen  397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAK  474 (559)
T ss_pred             hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHH
Confidence            77788888888888888888888888888763 6678888888888888888888888888888776 446678888888


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCC----CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008022          489 AYCKQGKVNNAIQLLDRIRGGG----EWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLF  562 (581)
Q Consensus       489 ~~~~~g~~~~A~~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  562 (581)
                      .|-+.++.++|...+++..+..    -+.| ...+..-|..-+.+.+++++|..+......-  .+...--..+++-+.
T Consensus       475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlReir  551 (559)
T KOG1155|consen  475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLREIR  551 (559)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHHHH
Confidence            8888888888888888766511    1222 1222233455566778888887777666652  444444445554443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.72  E-value=7.4e-14  Score=130.32  Aligned_cols=281  Identities=12%  Similarity=0.065  Sum_probs=143.9

Q ss_pred             cCChhhHHHHHHHHHhCCCCCcHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH--HHHHHHHccCChhHH
Q 008022          283 NGSMDEAVSVSYQMEENSCPPNVTT-YSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYT--CMVKVLCQNNMFHQA  359 (581)
Q Consensus       283 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a  359 (581)
                      .|+++.|.+.+....+..  +++.. +.....+..+.|+++.+...+.++.+.  .|+.....  .....+...|++++|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            466666665555443321  11222 222233335566666666666666553  23322211  224455556666666


Q ss_pred             HHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHH
Q 008022          360 HSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI-------TTYNELLDGLLRVNRVKEAFEL  432 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~  432 (581)
                      ...++++.+.. |.++.....+...|...|+++.|.+++..+.+.+..++.       ..|..++.......+.+...++
T Consensus       173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~  251 (398)
T PRK10747        173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW  251 (398)
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            66666665554 445555666666666666666666666666554433211       1222223323333344444555


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 008022          433 VTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW  512 (581)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  512 (581)
                      ++.+.+. .+.++.....+...+...|+.++|.+.+++..+.  +++....  ++.+....++++++++.+++..+   .
T Consensus       252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk---~  323 (398)
T PRK10747        252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK---Q  323 (398)
T ss_pred             HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh---h
Confidence            5544332 2345555555666666666666666666666553  3333222  12222234666666666666555   2


Q ss_pred             CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022          513 NP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM  578 (581)
Q Consensus       513 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  578 (581)
                      .| |+..+..+++.+.+.|++++|.+.|+++.+  ..|+...+..+...+.+.|+.++|.+.+++.+
T Consensus       324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            24 344455666666666666666666666665  34665555556666666666666666665543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=1.7e-12  Score=113.56  Aligned_cols=364  Identities=10%  Similarity=0.017  Sum_probs=259.7

Q ss_pred             CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhH-
Q 008022          195 GIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAY-  273 (581)
Q Consensus       195 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-  273 (581)
                      +...|...+....-.+.+.|....|...|......- +-.-.+|..|....   -+.+.    ...+.. +...+..-. 
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~----~~~l~~-~l~~~~h~M~  229 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEI----LSILVV-GLPSDMHWMK  229 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHH----HHHHHh-cCcccchHHH
Confidence            344465555555566778888999999988877541 22333333333322   22222    222222 122121111 


Q ss_pred             -HHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHH
Q 008022          274 -STLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCS--PNVVAYTCMVKVL  350 (581)
Q Consensus       274 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~  350 (581)
                       --+..++......+++..-.......|++.+...-+....+.....+++.|+.+|+++.+..+-  .|..+|+.++.+-
T Consensus       230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~  309 (559)
T KOG1155|consen  230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK  309 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence             1234566666788888888888888888877777777777778889999999999999987321  1556777665443


Q ss_pred             HccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 008022          351 CQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAF  430 (581)
Q Consensus       351 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  430 (581)
                      ...    ..+..+.+-...--+-.+.|...+.+.|+-.++.++|...|++..+.+ +.....|+.+..-|...++...|+
T Consensus       310 ~~~----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi  384 (559)
T KOG1155|consen  310 NDK----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAI  384 (559)
T ss_pred             hhh----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHH
Confidence            221    112222222111114567788888999999999999999999999887 345668899999999999999999


Q ss_pred             HHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 008022          431 ELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG  510 (581)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  510 (581)
                      +-++..++-. |.|-..|-.+.++|.-.+.+.=|+-+|+++.... +.|+..|..|+.+|.+.++.++|++.|.++...+
T Consensus       385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG  462 (559)
T ss_pred             HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence            9999999874 6788999999999999999999999999999875 5588999999999999999999999999999833


Q ss_pred             CCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCC-HHhHHHHHHHHHhccCCCChHHHHHH
Q 008022          511 EWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNE----GI-CPN-FATWNVLVRSLFSNLGHLGPVYILDD  576 (581)
Q Consensus       511 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~  576 (581)
                        ..+...+..|+..|-+.++.++|..+|++.++.    |. .|. ......|..-+.+.+++++|-.+...
T Consensus       463 --dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~  532 (559)
T KOG1155|consen  463 --DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL  532 (559)
T ss_pred             --ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence              235578899999999999999999999988663    22 231 22223344556667777777665443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.71  E-value=7.1e-17  Score=144.06  Aligned_cols=261  Identities=16%  Similarity=0.165  Sum_probs=102.5

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 008022          275 TLIHGLCSNGSMDEAVSVSYQMEENS-CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQN  353 (581)
Q Consensus       275 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  353 (581)
                      .+...+.+.|++++|++++....... .+.++..|..+.......++.+.|...++++...+.. ++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            44666777788888888875544333 2445555666666667778888888888888766433 45556666666 677


Q ss_pred             CChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008022          354 NMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYE-CLPNITTYNELLDGLLRVNRVKEAFEL  432 (581)
Q Consensus       354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~  432 (581)
                      +++++|..+++...+.  .+++..+...+..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|++.
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8888888887776554  3556667777788888888888888888875432 234666777778888888888888888


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 008022          433 VTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW  512 (581)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  512 (581)
                      +++..+.. |.|......++..+...|+.+++.++++...+.. +.|+..+..++.+|...|++++|+.++++...   .
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~---~  243 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK---L  243 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH---H
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc---c
Confidence            88888763 4457777788888888888888888888877664 45666778888888888888888888888877   4


Q ss_pred             CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          513 NP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       513 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      .| |+.....++.++...|+.++|.++.+++..
T Consensus       244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             STT-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            45 677778888888888888888888877654

>TIGR00540 hemY_coli hemY protein

Probab=99.71  E-value=4.8e-14  Score=132.43  Aligned_cols=292  Identities=12%  Similarity=0.055  Sum_probs=135.4

Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 008022            7 EKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINP   86 (581)
Q Consensus         7 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   86 (581)
                      ..|+++.|.+.+....+..+. ....+.....+..+.|+++.|.+.+.++.+..+.+...........+...|+++.|..
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~  174 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH  174 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence            446666666666555544221 2223334455555566666666666665543322222233333555555666666666


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHH-HHHHHHccCCHHHHHHHHHHhCCCc
Q 008022           87 IYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTT-IVSSICKLGQVEEARELAMRFGSGV  165 (581)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~  165 (581)
                      .++.+.+.. |.++.+...+...+.+.|++++|.+++..+.+.+.. +...+.. -...+                    
T Consensus       175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~--------------------  232 (409)
T TIGR00540       175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE--------------------  232 (409)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH--------------------
Confidence            666666554 344455555666666666666666666666655432 2111110 00110                    


Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccc---HH
Q 008022          166 SVYNALINGLCKEHKIEEAFWLLCEMVDRGI---DPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHS---FT  239 (581)
Q Consensus       166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~  239 (581)
                             ......+..++..+.+..+.+...   +.++..+..+...+...|+.+.|..++++..+.  .|+...   ..
T Consensus       233 -------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~  303 (409)
T TIGR00540       233 -------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL  303 (409)
T ss_pred             -------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence                   001111111112222222222211   114444444555555555555555555555544  222221   01


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 008022          240 SLLKGYLLGGRTHEASDLWNRMIREGFLPNV--VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK  317 (581)
Q Consensus       240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (581)
                      .........++.+.+.+.++...+..+ -|+  ....++...+.+.|++++|.+.|+........|+...+..+...+.+
T Consensus       304 l~~~~~l~~~~~~~~~~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~  382 (409)
T TIGR00540       304 CLPIPRLKPEDNEKLEKLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ  382 (409)
T ss_pred             HHHhhhcCCCChHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence            111112223455555555555554421 122  33445555566666666666666633322234555555566666666


Q ss_pred             cCCHHHHHHHHHHH
Q 008022          318 AGNLLGASQIWNRM  331 (581)
Q Consensus       318 ~~~~~~a~~~~~~~  331 (581)
                      .|+.++|.++|++.
T Consensus       383 ~g~~~~A~~~~~~~  396 (409)
T TIGR00540       383 AGDKAEAAAMRQDS  396 (409)
T ss_pred             cCCHHHHHHHHHHH
Confidence            66666666666554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.70  E-value=2.1e-12  Score=109.01  Aligned_cols=456  Identities=12%  Similarity=0.067  Sum_probs=304.2

Q ss_pred             HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCH
Q 008022           72 LDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQV  151 (581)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  151 (581)
                      +.-+....++..|+.+++.-...+-.-...+-..+..++.+.|++++|...+..+.+. -.++...+..|.-++.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence            5556678899999999988775542222334445666777999999999999998875 456777888888888889999


Q ss_pred             HHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 008022          152 EEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGC  231 (581)
Q Consensus       152 ~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  231 (581)
                      .+|..+..+.+.++-.-..+...-.+.++-++-..+-+.+...     ...-.++.......-.+++|.+++..+...  
T Consensus       108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--  180 (557)
T KOG3785|consen  108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--  180 (557)
T ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            9999999998888887777888888888888887777666543     122233444444555689999999999876  


Q ss_pred             CCCcccHHHHH-HHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHH
Q 008022          232 NPNIHSFTSLL-KGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSA  310 (581)
Q Consensus       232 ~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  310 (581)
                      .|+....+..+ -+|.+..-++-+.+++.-.++.- +.++...+..+....+.-.-..|..-...+.+.+...    | .
T Consensus       181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~  254 (557)
T KOG3785|consen  181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-P  254 (557)
T ss_pred             ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-h
Confidence            55655666544 45566677777888887766652 2244556655555555433334444444544433111    1 1


Q ss_pred             HHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHH-
Q 008022          311 LIDGFAKA-----GNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKG-  384 (581)
Q Consensus       311 l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-  384 (581)
                      .+.-.++.     .+-+.|.+++-.+.+.  .|  ...-.++-.|.+.++..+|..+.+++...  .|-..+...+..+ 
T Consensus       255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aa  328 (557)
T KOG3785|consen  255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAA  328 (557)
T ss_pred             hHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHH
Confidence            22222222     3457788887776654  23  23344566688999999999999887522  2333333333322 


Q ss_pred             ----hhcCCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC
Q 008022          385 ----LCGCGRVDWAMKLLDQMKQYECLPNIT-TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG  459 (581)
Q Consensus       385 ----~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  459 (581)
                          ........-|...|+..-+.+..-|.. --..+...+.-..++++.+-.+..+..--...|...+ .+..+++..|
T Consensus       329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atg  407 (557)
T KOG3785|consen  329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATG  407 (557)
T ss_pred             hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhc
Confidence                222234566777777665555443332 3445566666677899999999888876434444444 4678899999


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH-hHHHHHHHHHccCCHHHHHHH
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDII-SYTSLLWGICNSGGMQEAFIY  538 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~  538 (581)
                      ++.+|+++|-++....++.+..-...++++|.+.+.++-|.+++-++-.    +.+.. ....+...|.+.+.+=-|.+.
T Consensus       408 ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKA  483 (557)
T KOG3785|consen  408 NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKA  483 (557)
T ss_pred             ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999998876554443444456678999999999999988876654    12333 344556678899999889999


Q ss_pred             HHHHHHcCCCCCHHhH
Q 008022          539 LQKMLNEGICPNFATW  554 (581)
Q Consensus       539 ~~~~~~~~~~~~~~~~  554 (581)
                      |+.+...  .|++..|
T Consensus       484 Fd~lE~l--DP~pEnW  497 (557)
T KOG3785|consen  484 FDELEIL--DPTPENW  497 (557)
T ss_pred             hhHHHcc--CCCcccc
Confidence            9988764  5666544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=1.8e-12  Score=116.33  Aligned_cols=480  Identities=14%  Similarity=0.053  Sum_probs=310.3

Q ss_pred             CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHH
Q 008022           64 TVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVS  143 (581)
Q Consensus        64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  143 (581)
                      +..-+..+++-+..+.++..|.-+-++....+  .|+..-..+.+++.-.|+++.|..++..-.-.  ..|..+......
T Consensus        15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~   90 (611)
T KOG1173|consen   15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK   90 (611)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence            44556666666677777888888877777664  44444556777888888888887777654322  226667777778


Q ss_pred             HHHccCCHHHHHHHHHHh----------CCCc-------chH-----HHH-------HHHHHhcCChhHHHHHHHHHHHC
Q 008022          144 SICKLGQVEEARELAMRF----------GSGV-------SVY-----NAL-------INGLCKEHKIEEAFWLLCEMVDR  194 (581)
Q Consensus       144 ~~~~~g~~~~a~~~~~~~----------~~~~-------~~~-----~~l-------~~~~~~~~~~~~a~~~~~~~~~~  194 (581)
                      ++.+..+++.|..++...          +.+.       ..+     +.-       ...|....+.++|...|.+....
T Consensus        91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~  170 (611)
T KOG1173|consen   91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA  170 (611)
T ss_pred             HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence            888888888888887733          1110       000     000       01222233344444444444333


Q ss_pred             CCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCC----CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 008022          195 GIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGC----NPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNV  270 (581)
Q Consensus       195 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  270 (581)
                          |...+..+...-. ... -.+.+.++.+.....    ..+......+.........-+.....-....-.+...+.
T Consensus       171 ----D~~c~Ea~~~lvs-~~m-lt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~  244 (611)
T KOG1173|consen  171 ----DAKCFEAFEKLVS-AHM-LTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL  244 (611)
T ss_pred             ----chhhHHHHHHHHH-HHh-cchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH
Confidence                2222222111100 000 000000111110000    000111111111000000000000000000001222344


Q ss_pred             HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022          271 VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVL  350 (581)
Q Consensus       271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  350 (581)
                      .....-..-+...+++.+..++...+.+.. |+....+..-|.++...|+..+-..+=.++.+.- +..+.+|-.+.--|
T Consensus       245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YY  322 (611)
T KOG1173|consen  245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYY  322 (611)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHH
Confidence            455555666778899999999999988864 6677777777778889998888777777787763 33677899998888


Q ss_pred             HccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 008022          351 CQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAF  430 (581)
Q Consensus       351 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  430 (581)
                      ...|+..+|.+.|.+....+ +.-...|-.....|.-.+..++|...+....+.- +.....+-.+.--|.+.++.+.|.
T Consensus       323 l~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe  400 (611)
T KOG1173|consen  323 LMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAE  400 (611)
T ss_pred             HHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHH
Confidence            88899999999999987664 4446678888899999999999999998876532 222223344555688899999999


Q ss_pred             HHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008022          431 ELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----GT--KLDAITFNIIIYAYCKQGKVNNAIQLLD  504 (581)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~  504 (581)
                      ++|.+.... .|.|+...+.+.-.....+.+.+|..+|+..+..    +.  ..-..+++.|+.+|.+.+.+++|+..++
T Consensus       401 ~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q  479 (611)
T KOG1173|consen  401 KFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ  479 (611)
T ss_pred             HHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence            999999876 3668888888888888889999999999998832    10  1144578999999999999999999999


Q ss_pred             HHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 008022          505 RIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFS  563 (581)
Q Consensus       505 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  563 (581)
                      +...   ..| +..++.+++..|...|+++.|.+.|.+.+.  +.|+..+...++..+..
T Consensus       480 ~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  480 KALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence            9998   456 888999999999999999999999999986  68888766666665444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.69  E-value=2.3e-13  Score=113.19  Aligned_cols=290  Identities=17%  Similarity=0.149  Sum_probs=164.8

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCc---HHhHHHHHHHHHhcCCHHHH
Q 008022          248 GGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPN---VTTYSALIDGFAKAGNLLGA  324 (581)
Q Consensus       248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a  324 (581)
                      .++.++|.++|-+|.+.+. .+..+.-+|.+.|.+.|..+.|+++.+.+.++.--+.   ......+..-|...|-++.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            4667777777777776532 1334455566667777777777777777666421111   12233455556667777777


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC----hhhHHHHHHHhhcCCChHHHHHHHHH
Q 008022          325 SQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPN----TVTFNTFIKGLCGCGRVDWAMKLLDQ  400 (581)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~  400 (581)
                      +.+|..+.+.+. .-......|+..|-...+|++|+++-+++.+.+..+.    ...|..+...+....+++.|...+++
T Consensus       127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            777777666421 2344556666777777777777777776665542222    12345555555566667777777766


Q ss_pred             HhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022          401 MKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA  480 (581)
Q Consensus       401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  480 (581)
                      ..+.+ +..+..-..+.+.....|+++.|.+.++.+.+.+...-+.+...|..+|.+.|++++....+.++.+..  +..
T Consensus       206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~  282 (389)
T COG2956         206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGA  282 (389)
T ss_pred             HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCc
Confidence            66554 223333334555666667777777777777666544445566666667777777777777776666653  233


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc---cCCHHHHHHHHHHHHHc
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN---SGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~  545 (581)
                      ..-..+...-....-.+.|...+.+-..   -+|+...+..++..-..   .|...+.+..++.|+..
T Consensus       283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         283 DAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             cHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            3333444433333344444444433333   25666666666554432   23455555566666543

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.68  E-value=8.4e-13  Score=124.49  Aligned_cols=518  Identities=14%  Similarity=0.088  Sum_probs=302.3

Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 008022           16 YLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDG   95 (581)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   95 (581)
                      .+|..+...|+.|+..+|.+++..|+..|+.+.|- +|.-|...+.+.+...++.++.+....++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            45677788899999999999999999999999998 9999988788788889999999988888887776          


Q ss_pred             CCCChhhHHHHHHHHHhcCChhH---HHHHHHHHhh----CCCCCCcc--------------hHHHHHHHHHccCCHHHH
Q 008022           96 MEPNVFTYNILLKALCKNNRVDG---AYKLLVEMGN----KGCAPDAV--------------SYTTIVSSICKLGQVEEA  154 (581)
Q Consensus        96 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~--------------~~~~l~~~~~~~g~~~~a  154 (581)
                       .|.+.+|..+..+|.+.||...   ..+.++.+..    .|+.....              .-...+....-.|-++.+
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql  158 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL  158 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence             6888999999999999999755   3332222221    12110000              011233334445666666


Q ss_pred             HHHHHHhCCCcc--hHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCC
Q 008022          155 RELAMRFGSGVS--VYNALINGLCKEH-KIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGC  231 (581)
Q Consensus       155 ~~~~~~~~~~~~--~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  231 (581)
                      ++++...|....  .+...++-..... .+++-.........   .|++.+|..++......|+.+.|..++.+|.+.|+
T Consensus       159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf  235 (1088)
T KOG4318|consen  159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF  235 (1088)
T ss_pred             HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence            666665533221  1222233333222 23333333322222   47899999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhH----------------------
Q 008022          232 NPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEA----------------------  289 (581)
Q Consensus       232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----------------------  289 (581)
                      +.+.+.|..++-+   .++..-++.++..|...|+.|+..|+...+..+...|....+                      
T Consensus       236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~  312 (1088)
T KOG4318|consen  236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL  312 (1088)
T ss_pred             Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence            9888888877765   777888888889999999999999887766665554332111                      


Q ss_pred             --HHHHHHH------------HhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC-ChhhHHHHHHHHHc
Q 008022          290 --VSVSYQM------------EENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISN--GCSP-NVVAYTCMVKVLCQ  352 (581)
Q Consensus       290 --~~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~~~~~~l~~~~~~  352 (581)
                        .+.++.-            .-.|.......|...... ..+|.-+..+++...+..-  ...+ ++..+..++.-|.+
T Consensus       313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr  391 (1088)
T KOG4318|consen  313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR  391 (1088)
T ss_pred             HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence              1111100            000111112222222221 2245666666666655432  1112 23334444443332


Q ss_pred             cCC----------------------hhHHHHHHHHHhhC----------------CCC-------CChhhHHHHHHHhhc
Q 008022          353 NNM----------------------FHQAHSLIEKMAFE----------------NCP-------PNTVTFNTFIKGLCG  387 (581)
Q Consensus       353 ~~~----------------------~~~a~~~~~~~~~~----------------~~~-------~~~~~~~~l~~~~~~  387 (581)
                      .-+                      ..+..++.......                ...       +-...-+.++..+++
T Consensus       392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s  471 (1088)
T KOG4318|consen  392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS  471 (1088)
T ss_pred             HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence            111                      01111111111000                000       001112333444444


Q ss_pred             CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCcccHHHHHHHHHHHHhcCCHHHHH
Q 008022          388 CGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC--GIQLNIVTYNTILHGVCRAGMVVEAF  465 (581)
Q Consensus       388 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~  465 (581)
                      .-+..+++..-+.....-   -...|..++.-+...+..+.|..+..+....  .+..|...+..+.+...+.+....+.
T Consensus       472 e~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~  548 (1088)
T KOG4318|consen  472 EYNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLS  548 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHH
Confidence            444444433322222211   1145677777777778888888888777543  23345556777788888888888888


Q ss_pred             HHHHHHHHCCC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022          466 QLLGKMLIEGT-KL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       466 ~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                      .++.++.+.-. .| -..++..+.+.....|+.+.-.++++-+.. .|+.-+    ..++....+.++...|++..+...
T Consensus       549 tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~~vhLrkdd~s~a~ea~e~~~  623 (1088)
T KOG4318|consen  549 TILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVS-LGLSET----GPLWMVHLRKDDQSAAQEAPEPEE  623 (1088)
T ss_pred             HHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccceEEEeeccchhhhhhcchHHH
Confidence            88888876421 22 244566677777778888888888777766 332221    223334455666666666666554


Q ss_pred             HcCCCCCHHhHHHHHHHH
Q 008022          544 NEGICPNFATWNVLVRSL  561 (581)
Q Consensus       544 ~~~~~~~~~~~~~l~~~~  561 (581)
                      .. .+|.+.....+.+..
T Consensus       624 qk-yk~~P~~~e~lcrlv  640 (1088)
T KOG4318|consen  624 QK-YKPYPKDLEGLCRLV  640 (1088)
T ss_pred             HH-hcCChHHHHHHHHHH
Confidence            32 445555444444333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.68  E-value=5.5e-13  Score=117.32  Aligned_cols=220  Identities=14%  Similarity=0.066  Sum_probs=115.0

Q ss_pred             cCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 008022          283 NGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSL  362 (581)
Q Consensus       283 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  362 (581)
                      .|+.-.|..-|+..++.... +...|-.+...|....+.++....|+...+.++. ++.+|..-.+...-.+++++|..=
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence            34555555555555444322 1222444444555555555555555555554332 444454444445555555555555


Q ss_pred             HHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc
Q 008022          363 IEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQ  442 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  442 (581)
                      |++..... |.+...|-.+.-+..+.++++++...|++..+. ++..+..|+.....+..+++++.|.+.|+..++....
T Consensus       417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~  494 (606)
T KOG0547|consen  417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR  494 (606)
T ss_pred             HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence            55555443 334444444444444555666666666665543 2334455666666666666666666666655543111


Q ss_pred             -----cc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          443 -----LN--IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       443 -----~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                           .+  +.+...++.. .-.+++..|..++.++.+.+ +-....+..|+..-.+.|+.++|+++|++...
T Consensus       495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                 11  1111111111 12367777777777777654 23455677777777777777777777777655

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=2.2e-14  Score=131.19  Aligned_cols=279  Identities=11%  Similarity=0.007  Sum_probs=194.7

Q ss_pred             ChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCChhHHHHH
Q 008022          285 SMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGC--SPNVVAYTCMVKVLCQNNMFHQAHSL  362 (581)
Q Consensus       285 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~  362 (581)
                      +..+|...|..+..+ +..+..+...+..+|...+++++|+.+|+.+.+..+  ..+..+|...+-.+-+    +-++..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            456777777774443 344556777788888888888888888888876521  1144566665544322    223333


Q ss_pred             HH-HHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 008022          363 IE-KMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGI  441 (581)
Q Consensus       363 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  441 (581)
                      +. .+... .+..+.+|..+..+|.-.++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+..+... 
T Consensus       409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-  485 (638)
T KOG1126|consen  409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-  485 (638)
T ss_pred             HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence            33 33333 36778888888888888888888888888887765 2256677777777777888888888888877532 


Q ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHH
Q 008022          442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYT  520 (581)
Q Consensus       442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~  520 (581)
                      +-+-..|-.+.-.|.+.++++.|+-.|+++...+ +.+......++..+.+.|+.++|+++++++..   +.| |+..--
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~  561 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKY  561 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHH
Confidence            2233344556667788888888888888888765 44666777788888888888888888888887   455 555555


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhccCCCChHHHHHHH
Q 008022          521 SLLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSLFSNLGHLGPVYILDDI  577 (581)
Q Consensus       521 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~  577 (581)
                      ..+..+...+++++|+..++++.+.  .|+ ...+..++..|.+.|+.+.|+.-+-=+
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A  617 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWA  617 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence            6677777888888888888888873  454 556677777888888888777655433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.66  E-value=5.5e-10  Score=102.24  Aligned_cols=516  Identities=12%  Similarity=0.112  Sum_probs=337.4

Q ss_pred             hHhhhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 008022            3 EKLGEKCEIDGVQYLLQQMKVE-GVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRF   81 (581)
Q Consensus         3 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (581)
                      ..+..+|+.......|.+.+.. .++....+|...+......|-++-+..++++.++    .++..-...+..++..+++
T Consensus       110 q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~  185 (835)
T KOG2047|consen  110 QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRL  185 (835)
T ss_pred             HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccch
Confidence            4567889999999999988775 3344667888899999999999999999999998    4555677788889999999


Q ss_pred             chHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCChh---HHHHHHHHHhhCCCCCCc--chHHHHHHHHHccCC
Q 008022           82 SMINPIYSNMKRDG------MEPNVFTYNILLKALCKNNRVD---GAYKLLVEMGNKGCAPDA--VSYTTIVSSICKLGQ  150 (581)
Q Consensus        82 ~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~  150 (581)
                      ++|.+.+.......      .+.+-..|..+-...+++.+.-   ....+++.+...  -+|.  ..|.+|.+-|.+.|.
T Consensus       186 ~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~  263 (835)
T KOG2047|consen  186 DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGL  263 (835)
T ss_pred             HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhh
Confidence            99999998876431      1444456666666555543332   233344444333  2333  357889999999999


Q ss_pred             HHHHHHHHHHhCCC---cchHHHHHHHHHh----------------cC------ChhHHHHHHHHHHHCCC---------
Q 008022          151 VEEARELAMRFGSG---VSVYNALINGLCK----------------EH------KIEEAFWLLCEMVDRGI---------  196 (581)
Q Consensus       151 ~~~a~~~~~~~~~~---~~~~~~l~~~~~~----------------~~------~~~~a~~~~~~~~~~~~---------  196 (581)
                      +++|..++++.-..   +.-|..+..+|..                .+      +++-....|+.+...+.         
T Consensus       264 ~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLR  343 (835)
T KOG2047|consen  264 FEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLR  343 (835)
T ss_pred             hHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHh
Confidence            99999999887222   2222222222221                11      13334444555544321         


Q ss_pred             --CCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC------cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 008022          197 --DPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPN------IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLP  268 (581)
Q Consensus       197 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  268 (581)
                        +-+..+|..-..  ...|+..+-...+.+.... +.|.      ...|..+...|-..|+.+.|..+|++..+...+.
T Consensus       344 Qn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~  420 (835)
T KOG2047|consen  344 QNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT  420 (835)
T ss_pred             cCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence              112223332222  2356667777777777654 2222      3457778899999999999999999988764332


Q ss_pred             C---HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-----------C------cHHhHHHHHHHHHhcCCHHHHHHHH
Q 008022          269 N---VVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCP-----------P------NVTTYSALIDGFAKAGNLLGASQIW  328 (581)
Q Consensus       269 ~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~~a~~~~  328 (581)
                      -   ..+|..-...=.+..+++.|+++++....-.-+           +      +...|...+..--..|-++....+|
T Consensus       421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vY  500 (835)
T KOG2047|consen  421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVY  500 (835)
T ss_pred             hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHH
Confidence            1   234555555556777888999988876532211           1      2334555666666778889999999


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHhhc---CCChHHHHHHHHHHhhC
Q 008022          329 NRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPN-TVTFNTFIKGLCG---CGRVDWAMKLLDQMKQY  404 (581)
Q Consensus       329 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~  404 (581)
                      +++++..+. ++.........+-...-++++.+++++-+..-..|+ ..+|+..+.-+.+   ...++.|..+|++..+ 
T Consensus       501 driidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-  578 (835)
T KOG2047|consen  501 DRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-  578 (835)
T ss_pred             HHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Confidence            999887654 444444445556667778999999998766533344 3455555444432   3578999999999998 


Q ss_pred             CCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCccc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022          405 ECLPNITTYNELLDG--LLRVNRVKEAFELVTEIEKCGIQLN--IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA  480 (581)
Q Consensus       405 ~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  480 (581)
                      +++|...-+..|+.+  -.+.|-...|+.++++.-.. +++.  ...|+..+.--...=-+.....+|+++++.  -|+.
T Consensus       579 ~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~  655 (835)
T KOG2047|consen  579 GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDS  655 (835)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChH
Confidence            666655543333333  23468888999999997654 3333  346777766554444456667888888875  3444


Q ss_pred             HH---HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHH
Q 008022          481 IT---FNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQE  534 (581)
Q Consensus       481 ~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~  534 (581)
                      ..   ....+..-.+.|..+.|..++....+..  .|  +...|.+.-..-.++|+-+.
T Consensus       656 ~~r~mclrFAdlEtklGEidRARaIya~~sq~~--dPr~~~~fW~twk~FEvrHGnedT  712 (835)
T KOG2047|consen  656 KAREMCLRFADLETKLGEIDRARAIYAHGSQIC--DPRVTTEFWDTWKEFEVRHGNEDT  712 (835)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcC--CCcCChHHHHHHHHHHHhcCCHHH
Confidence            43   3344566678999999999999888743  45  66778888777889998433

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.66  E-value=2.8e-12  Score=110.40  Aligned_cols=292  Identities=13%  Similarity=0.063  Sum_probs=196.7

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 008022          248 GGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQI  327 (581)
Q Consensus       248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  327 (581)
                      .|++.+|+++..+-.+.+-. ....|..-..+..+.|+.+.+-.++.+..+....++....-...+.....|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            56777777776665555422 22234444455566677777777776666653334444555555666667777777777


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCh-------hhHHHHHHHhhcCCChHHHHHHHHH
Q 008022          328 WNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNT-------VTFNTFIKGLCGCGRVDWAMKLLDQ  400 (581)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~  400 (581)
                      ..++.+.++. ++.......++|.+.|++.....++..+.+.+.-.+.       .++..+++-....+..+.-...|+.
T Consensus       176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            7776665433 4556666667777777777777777777766654433       3455555555555555555556666


Q ss_pred             HhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022          401 MKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA  480 (581)
Q Consensus       401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  480 (581)
                      .... ...++..-..++.-+...|+.++|.++.++..+.+..|+..    ..-.+.+.++.+.-++..++..+.. +.++
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p  328 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDP  328 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence            5332 23455566677778888899999999988888876666521    2234567788888888887777663 4466


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN  550 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  550 (581)
                      ..+..++..|.+.+.|.+|.+.|+...+   ..|+..+|+.+..++.+.|+..+|.+..++.+..-..|+
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            7788888999999999999999998887   678888999999999999999999988888764433444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.65  E-value=2.3e-12  Score=110.94  Aligned_cols=285  Identities=11%  Similarity=0.059  Sum_probs=232.1

Q ss_pred             cCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHH
Q 008022          283 NGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSL  362 (581)
Q Consensus       283 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  362 (581)
                      .|++.+|.+...+-.+.+.. ....|..-.++-.+.|+.+.+..++.++.+....++....-...+.....|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            69999999999997777633 34456666677788999999999999998875456666777788889999999999999


Q ss_pred             HHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChh-------hHHHHHHHHHhcCCHHHHHHHHHH
Q 008022          363 IEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNIT-------TYNELLDGLLRVNRVKEAFELVTE  435 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~  435 (581)
                      +.++...+ |-++.......++|.+.|++.....++..+.+.+.-.+..       +|+.+++-....+..+.-...|+.
T Consensus       176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            99998876 6788899999999999999999999999999988765543       455566655555666666667777


Q ss_pred             HHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 008022          436 IEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD  515 (581)
Q Consensus       436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~  515 (581)
                      .... .+.++..-.+++.-+.+.|+.++|.++..+.++.+..|.   + ...-.+.+-++++.=++..++-....+.  +
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~  327 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHPE--D  327 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCCC--C
Confidence            6554 355677777888899999999999999999999876655   2 2223566788999888888888775544  4


Q ss_pred             HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022          516 IISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM  578 (581)
Q Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  578 (581)
                      +..+.+|+..|.+.+.|.+|...|+..++  ..|+..++..+..++.+.|+..+|.+..++.+
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            47788999999999999999999999887  57999999999999999999999999888754

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.65  E-value=1.6e-12  Score=108.37  Aligned_cols=287  Identities=15%  Similarity=0.173  Sum_probs=209.8

Q ss_pred             hcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHccCC
Q 008022          282 SNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVV------AYTCMVKVLCQNNM  355 (581)
Q Consensus       282 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~  355 (581)
                      -+++.++|.+.|-+|.+.. +.+..+..++.+.|.+.|..+.|+++.+.+.++   ||..      ....|.+-|...|-
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl  122 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL  122 (389)
T ss_pred             hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence            3577888999988888753 445566677888888899999999998888876   4432      34556677888899


Q ss_pred             hhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCCHHHHHH
Q 008022          356 FHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI----TTYNELLDGLLRVNRVKEAFE  431 (581)
Q Consensus       356 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~  431 (581)
                      ++.|+.+|..+.+.+ .--......|+..|....+|++|+++-.++.+.+..+..    ..|.-+...+....+.+.|..
T Consensus       123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~  201 (389)
T COG2956         123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE  201 (389)
T ss_pred             hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            999999998888764 455677788888898889999999988888776644432    246677777778888888999


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 008022          432 LVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE  511 (581)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  511 (581)
                      ++.+..+.+ +.....--.+.+.....|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++...++.++.+   
T Consensus       202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~---  277 (389)
T COG2956         202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME---  277 (389)
T ss_pred             HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---
Confidence            988888764 3334444456777888899999999998888876555567788888899999999999999988887   


Q ss_pred             CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc---cCCCChHHHHHHHhh
Q 008022          512 WNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSN---LGHLGPVYILDDIMA  579 (581)
Q Consensus       512 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~  579 (581)
                      ..+....-..+........-.+.|..++.+-+..  .|+...+..++..-...   |...+-+..+++|+.
T Consensus       278 ~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         278 TNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            3455555555665555555567777776665553  68888777777754432   334555566666654

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=2e-13  Score=125.03  Aligned_cols=285  Identities=13%  Similarity=0.039  Sum_probs=226.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHHHHH
Q 008022          249 GRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENS--CPPNVTTYSALIDGFAKAGNLLGASQ  326 (581)
Q Consensus       249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~  326 (581)
                      -+..+|...|..+...- .-...+...+..+|...+++++|.++|+.+.+..  .-.+..+|...+..+-+    +-+..
T Consensus       333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls  407 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS  407 (638)
T ss_pred             HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence            35678888898855542 2244667788899999999999999999998764  12366777777654432    22222


Q ss_pred             HH-HHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCC
Q 008022          327 IW-NRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYE  405 (581)
Q Consensus       327 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  405 (581)
                      .+ +.+.+.. +..+.+|-.+..+|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+......
T Consensus       408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~  485 (638)
T KOG1126|consen  408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD  485 (638)
T ss_pred             HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence            22 2333332 3367899999999999999999999999999875 4578888888888888899999999999988643


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008022          406 CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNI  485 (581)
Q Consensus       406 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  485 (581)
                       +.+...|--+...|.+.++++.|.-.|+.+.+-+ |.+......+...+.+.|+.++|+.+++++...+ +.|+..-..
T Consensus       486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~  562 (638)
T KOG1126|consen  486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH  562 (638)
T ss_pred             -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence             1233355567778999999999999999999864 5577778888889999999999999999999876 446666677


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 008022          486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEG  546 (581)
Q Consensus       486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (581)
                      .+..+...+++++|+..++++.+   +.| +...+..++..|.+.|+.+.|+.-|--|.+.+
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            78889999999999999999999   678 56678889999999999999999999998743

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.63  E-value=1.6e-10  Score=108.15  Aligned_cols=406  Identities=13%  Similarity=0.008  Sum_probs=247.7

Q ss_pred             CCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCccc-HH
Q 008022          130 GCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVIT-YS  204 (581)
Q Consensus       130 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~  204 (581)
                      .+..|+..|..+.-+..+.|+++.+.+.|++.    -.....|+.+...+...|.-..|..++++.......|+..+ +-
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            34557778888888889999999999999988    34566788888889999998999999888766543344333 33


Q ss_pred             HHHHHHH-ccCChhHHHHHHHHHHHc--CC--CCCcccHHHHHHHHHc-----------cCCHHHHHHHHHHHHhCCCCC
Q 008022          205 TIISSLC-DVGNVETSLGILGQMFVR--GC--NPNIHSFTSLLKGYLL-----------GGRTHEASDLWNRMIREGFLP  268 (581)
Q Consensus       205 ~l~~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~-----------~~~~~~a~~~~~~~~~~~~~~  268 (581)
                      ..-..|. +.+..+++...-.++...  +.  ...+..+..+.-+|..           .....++++.+++..+.+.. 
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-  476 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-  476 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence            3334443 456677777777666652  11  1123334444333332           12234677788888776533 


Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022          269 NVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVK  348 (581)
Q Consensus       269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  348 (581)
                      |+.....+.--|+..++.+.|.+..++..+-+...++..|..+.-.+...+++.+|+.+.+.....-. .|......-+.
T Consensus       477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~-~N~~l~~~~~~  555 (799)
T KOG4162|consen  477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG-DNHVLMDGKIH  555 (799)
T ss_pred             CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-hhhhhchhhhh
Confidence            33333334445777889999999999988876677888898888888889999999999887765411 11111111122


Q ss_pred             HHHccCChhHHHHHHHHHhhC---------------------C-------CCCChhhHHHHHHHhhcCCChHHHHHHHHH
Q 008022          349 VLCQNNMFHQAHSLIEKMAFE---------------------N-------CPPNTVTFNTFIKGLCGCGRVDWAMKLLDQ  400 (581)
Q Consensus       349 ~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  400 (581)
                      .-..-++.++++.....+...                     +       ......++..+.......+........   
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---  632 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---  632 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---
Confidence            222345555555544443211                     0       000111111111111100000000000   


Q ss_pred             HhhCCCC--CC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          401 MKQYECL--PN------ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKML  472 (581)
Q Consensus       401 ~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  472 (581)
                      +....+.  |+      ...|......+.+.++.++|...+.+..+.. +.....|......+...|..++|.+.|...+
T Consensus       633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al  711 (799)
T KOG4162|consen  633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL  711 (799)
T ss_pred             cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence            1111111  11      1134445556667777777777777776652 4455566666667777788888888887777


Q ss_pred             HCCCCcCHHHHHHHHHHHHhcCCHHHHHH--HHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          473 IEGTKLDAITFNIIIYAYCKQGKVNNAIQ--LLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       473 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      ..+ +.++.+...++.++.+.|+..-|..  ++..+.+   +.| +...|..++..+.+.|+.+.|.+.|+.+.+.
T Consensus       712 ~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr---~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  712 ALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALR---LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             hcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            754 4466677778888888887766666  7777777   456 6677888888888888888888888877653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.62  E-value=4.1e-10  Score=103.26  Aligned_cols=451  Identities=14%  Similarity=0.085  Sum_probs=195.3

Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 008022           42 RVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYK  121 (581)
Q Consensus        42 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  121 (581)
                      ..+++...+++.+.+++ ..+...++.....-.+...|+.++|........+.+ ..+.+.|..+.-.+...+++++|++
T Consensus        19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK   96 (700)
T KOG1156|consen   19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK   96 (700)
T ss_pred             HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence            44444444444444444 111222222222222333444444544444444432 2333444444444444445555555


Q ss_pred             HHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC-C
Q 008022          122 LLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRG-I  196 (581)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~  196 (581)
                      .|......+.. |...+..+.-.-++.|+++.....-.++    +.....|..++.+..-.|++..|..++++..+.. -
T Consensus        97 cy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~  175 (700)
T KOG1156|consen   97 CYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT  175 (700)
T ss_pred             HHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            55544443211 3333333333334444443333332222    3334445555555555555555555555554442 1


Q ss_pred             CCCcccHHHHH------HHHHccCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 008022          197 DPNVITYSTII------SSLCDVGNVETSLGILGQMFVRGCNPN-IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPN  269 (581)
Q Consensus       197 ~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  269 (581)
                      .|+...+....      ....+.|.++.|++.+......  ..| ...-..-...+.+.++.++|..++..+...  .||
T Consensus       176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPd  251 (700)
T KOG1156|consen  176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPD  251 (700)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cch
Confidence            23333332211      2234455555565555443222  111 111122334455566666666666666655  344


Q ss_pred             HHhHHHHH-HHHHhcCChhhHH-HHHHHHHhCCCCCcHHhHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 008022          270 VVAYSTLI-HGLCSNGSMDEAV-SVSYQMEENSCPPNVTTYSAL-IDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCM  346 (581)
Q Consensus       270 ~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  346 (581)
                      ...|...+ .++.+..+..++. .+|....+.-  |....-..+ +.......-.+....++....+.|+++   ++..+
T Consensus       252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl  326 (700)
T KOG1156|consen  252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDL  326 (700)
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhh
Confidence            44433332 3332233333333 3444333321  111111111 111111111223334444445555433   22222


Q ss_pred             HHHHHccCChhHHHHHHHHH----hhCC----------CCCChhhH--HHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh
Q 008022          347 VKVLCQNNMFHQAHSLIEKM----AFEN----------CPPNTVTF--NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI  410 (581)
Q Consensus       347 ~~~~~~~~~~~~a~~~~~~~----~~~~----------~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  410 (581)
                      ...|-.....+-..++...+    ...+          -+|....|  ..++..+-..|+++.|...++....+.  |+.
T Consensus       327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT--PTl  404 (700)
T KOG1156|consen  327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT--PTL  404 (700)
T ss_pred             HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC--chH
Confidence            22221111111111111111    0000          13343333  345566667777777777777666542  443


Q ss_pred             h-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-----CHH-HH
Q 008022          411 T-TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL-----DAI-TF  483 (581)
Q Consensus       411 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~-~~  483 (581)
                      . .|..-.+.+...|.+++|..++++..+.+ .+|...-..-+....++++.++|.++.....+.|...     +.. .|
T Consensus       405 iEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmW  483 (700)
T KOG1156|consen  405 IELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMW  483 (700)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHH
Confidence            2 44444566666777777777777776654 4454444445555566777777777777776665310     001 12


Q ss_pred             HH--HHHHHHhcCCHHHHHHHHHHHh
Q 008022          484 NI--IIYAYCKQGKVNNAIQLLDRIR  507 (581)
Q Consensus       484 ~~--l~~~~~~~g~~~~A~~~~~~~~  507 (581)
                      ..  -+.+|.+.|++..|++-|..+.
T Consensus       484 f~~E~g~ay~r~~k~g~ALKkfh~i~  509 (700)
T KOG1156|consen  484 FQLEDGEAYLRQNKLGLALKKFHEIE  509 (700)
T ss_pred             HhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence            11  1356666666666666555443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.61  E-value=4.8e-10  Score=102.82  Aligned_cols=218  Identities=11%  Similarity=0.043  Sum_probs=100.8

Q ss_pred             hcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHH
Q 008022           77 AENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARE  156 (581)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  156 (581)
                      ..+++...+++.+.+.+. .+-...+.....-.+...|+.++|..........++. +...|..+.-.+-...++++|++
T Consensus        19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiK   96 (700)
T KOG1156|consen   19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIK   96 (700)
T ss_pred             HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHH
Confidence            445555555555555542 2333334433333444455555555555554443222 44445555444555555555555


Q ss_pred             HHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcC-C
Q 008022          157 LAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRG-C  231 (581)
Q Consensus       157 ~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~  231 (581)
                      .+...    +.|...+..+.-.-++.++++.....-..+.+.. +.....|..+..++.-.|+...|..+++...+.. -
T Consensus        97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~  175 (700)
T KOG1156|consen   97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT  175 (700)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            55555    4455555555555555555555555444444431 1123344445555555555555555555555442 1


Q ss_pred             CCCcccHHHH------HHHHHccCCHHHHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 008022          232 NPNIHSFTSL------LKGYLLGGRTHEASDLWNRMIREGFLPNVV-AYSTLIHGLCSNGSMDEAVSVSYQMEEN  299 (581)
Q Consensus       232 ~~~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~  299 (581)
                      .|+...+...      .......|..+.|.+.+......  ..|-. .-..-...+.+.+++++|..++..+...
T Consensus       176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r  248 (700)
T KOG1156|consen  176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER  248 (700)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence            2333333221      12233445555555544433222  11111 1222233445555555555555555554

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=9.9e-10  Score=95.15  Aligned_cols=309  Identities=17%  Similarity=0.083  Sum_probs=212.5

Q ss_pred             ccCCHHHHHHHHHHHHhC-CCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHH
Q 008022          247 LGGRTHEASDLWNRMIRE-GFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGAS  325 (581)
Q Consensus       247 ~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  325 (581)
                      ..++...+...+-.+... -++-|......+..++...|+.++|+..|++.+..+ +.+..........+.+.|+.+...
T Consensus       208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~  286 (564)
T KOG1174|consen  208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDS  286 (564)
T ss_pred             HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHH
Confidence            344544444444333333 234466678888888999999999999998877653 223333444444556778888887


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCC
Q 008022          326 QIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYE  405 (581)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  405 (581)
                      .+...+.... .-....|-.-.......++++.|+.+-++.++.+ +.+...+-.-..++...+++++|.-.|+......
T Consensus       287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La  364 (564)
T KOG1174|consen  287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA  364 (564)
T ss_pred             HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence            7777766542 1122233333444566788899999988888764 4455555555567778899999998898887654


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 008022          406 CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTIL-HGVC-RAGMVVEAFQLLGKMLIEGTKLDAITF  483 (581)
Q Consensus       406 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~  483 (581)
                       +-+...|.-|+.+|...|++.+|.-+-....+. .+.+..++..+. ..+. ...--++|.+++++.++.. +.-....
T Consensus       365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV  441 (564)
T KOG1174|consen  365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAV  441 (564)
T ss_pred             -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHH
Confidence             346778999999999999999998887776654 355566665552 2222 2233488999998888753 2234566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 008022          484 NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFS  563 (581)
Q Consensus       484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  563 (581)
                      +.++..+...|.+++++.++++...   ..||....+.|+..+...+.+++|.+.|..++.  +.|+..--..=++.+-+
T Consensus       442 ~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~~lEK  516 (564)
T KOG1174|consen  442 NLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGLRLLEK  516 (564)
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHh
Confidence            7788889999999999999999887   458888889999999999999999999999887  45654433333444444


Q ss_pred             ccC
Q 008022          564 NLG  566 (581)
Q Consensus       564 ~g~  566 (581)
                      +.+
T Consensus       517 ~~~  519 (564)
T KOG1174|consen  517 SDD  519 (564)
T ss_pred             ccC
Confidence            433

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.54  E-value=2.4e-10  Score=108.44  Aligned_cols=90  Identities=13%  Similarity=0.177  Sum_probs=74.1

Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 008022           52 MFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGC  131 (581)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  131 (581)
                      ++..+...|+.|+-.+|..+|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+..+.++.+.+.           
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------   79 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------   79 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence            4555667788899889999999999999988888 8888887777788888999888888888877665           


Q ss_pred             CCCcchHHHHHHHHHccCCHHH
Q 008022          132 APDAVSYTTIVSSICKLGQVEE  153 (581)
Q Consensus       132 ~~~~~~~~~l~~~~~~~g~~~~  153 (581)
                      .|.+.+|+.|...|...|+...
T Consensus        80 ep~aDtyt~Ll~ayr~hGDli~  101 (1088)
T KOG4318|consen   80 EPLADTYTNLLKAYRIHGDLIL  101 (1088)
T ss_pred             CCchhHHHHHHHHHHhccchHH
Confidence            6788889999999998888654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.54  E-value=3.9e-10  Score=106.21  Aligned_cols=293  Identities=15%  Similarity=0.134  Sum_probs=151.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 008022           34 ISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKN  113 (581)
Q Consensus        34 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  113 (581)
                      ......+...|++++|++.++.... .+.............+.+.|++++|...|..+.+.+ |.|...|..+..+..-.
T Consensus         8 LY~~~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~   85 (517)
T PF12569_consen    8 LYKNSILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQ   85 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhh
Confidence            3344445566666666666655443 222334444555566666666666666666666654 33333333344333111


Q ss_pred             -----CChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHH-HHHHh--CCCcchHHHHHHHHHhcCChhHHH
Q 008022          114 -----NRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARE-LAMRF--GSGVSVYNALINGLCKEHKIEEAF  185 (581)
Q Consensus       114 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~  185 (581)
                           .+.+...++++++...  .|.......+.-.+..-..+..... .+...  ..-+.+|+.+-..|....+..-..
T Consensus        86 ~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   86 LQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             cccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence                 2345555556655444  2333332222222222111111111 11111  222344444444444333333334


Q ss_pred             HHHHHHHHC----C----------CCCCc--ccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-cccHHHHHHHHHcc
Q 008022          186 WLLCEMVDR----G----------IDPNV--ITYSTIISSLCDVGNVETSLGILGQMFVRGCNPN-IHSFTSLLKGYLLG  248 (581)
Q Consensus       186 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  248 (581)
                      +++......    +          -+|..  .++..+...|...|++++|+..+++.+++  .|+ +..|..-.+.+-..
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~  241 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHC
Confidence            444443322    1          11222  23344556666777777777777777776  344 55666667777777


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH--------HhHHHHHHHHHhcCC
Q 008022          249 GRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNV--------TTYSALIDGFAKAGN  320 (581)
Q Consensus       249 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~  320 (581)
                      |++.+|.+.++.....+.. |...-+.....+.+.|+.++|.+++....+.+..|..        ........+|.+.|+
T Consensus       242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~  320 (517)
T PF12569_consen  242 GDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD  320 (517)
T ss_pred             CCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence            7777777777777776533 5555556666677777777777777776665432211        112344566677777


Q ss_pred             HHHHHHHHHHHHh
Q 008022          321 LLGASQIWNRMIS  333 (581)
Q Consensus       321 ~~~a~~~~~~~~~  333 (581)
                      +..|+..|..+.+
T Consensus       321 ~~~ALk~~~~v~k  333 (517)
T PF12569_consen  321 YGLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHHH
Confidence            7776666655544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.54  E-value=3.2e-09  Score=99.59  Aligned_cols=404  Identities=13%  Similarity=-0.010  Sum_probs=268.2

Q ss_pred             CCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh------CCCcch
Q 008022           94 DGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF------GSGVSV  167 (581)
Q Consensus        94 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~------~~~~~~  167 (581)
                      ..++.++.+|..+.-++...|+++.+.+.|++....-+ -....|..+...|...|.-..|..+++..      |++...
T Consensus       317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~  395 (799)
T KOG4162|consen  317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV  395 (799)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence            34567888999999999999999999999998876533 36677888889999999999999998887      233444


Q ss_pred             HHHHHHHHH-hcCChhHHHHHHHHHHHC--CC--CCCcccHHHHHHHHHcc-----------CChhHHHHHHHHHHHcCC
Q 008022          168 YNALINGLC-KEHKIEEAFWLLCEMVDR--GI--DPNVITYSTIISSLCDV-----------GNVETSLGILGQMFVRGC  231 (581)
Q Consensus       168 ~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~  231 (581)
                      +-.....|. +-+..++++....+....  +.  ...+..|..+.-+|...           ....++++.+++..+.+ 
T Consensus       396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-  474 (799)
T KOG4162|consen  396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-  474 (799)
T ss_pred             HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-
Confidence            444444444 456677777766666552  11  12334455444444322           12355777788877765 


Q ss_pred             CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHH
Q 008022          232 NPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSAL  311 (581)
Q Consensus       232 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  311 (581)
                      +.|+.+...+.--|+..++...|.+...+..+.+...+...|..|.-.+...+++.+|+.+.+.....- +.|......-
T Consensus       475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~  553 (799)
T KOG4162|consen  475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK  553 (799)
T ss_pred             CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence            224444444555577889999999999999988667788899999999999999999999988766531 1111111111


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhC---------------------C-------CCCChhhHHHHHHHHHccC---ChhHHH
Q 008022          312 IDGFAKAGNLLGASQIWNRMISN---------------------G-------CSPNVVAYTCMVKVLCQNN---MFHQAH  360 (581)
Q Consensus       312 ~~~~~~~~~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~---~~~~a~  360 (581)
                      +..-...++.+++......+...                     |       ......++..+.......+   ..+.. 
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~-  632 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK-  632 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-
Confidence            22222244444444333322210                     0       0001112222211111000   00111 


Q ss_pred             HHHHHHhhCCCCCC--------hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008022          361 SLIEKMAFENCPPN--------TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFEL  432 (581)
Q Consensus       361 ~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  432 (581)
                           +......|+        ...|......+.+.++.++|...+.+..... +-....|......+...|+.++|.+.
T Consensus       633 -----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~a  706 (799)
T KOG4162|consen  633 -----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEA  706 (799)
T ss_pred             -----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence                 111111121        1234566777888899999988888876644 44566777777888889999999999


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 008022          433 VTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQ--LLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGG  509 (581)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  509 (581)
                      |......+ |.++.+..++...+.+.|+..-|..  ++..+.+.+ +.+...|..++..+-+.|+.+.|.+.|..+.+.
T Consensus       707 f~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  707 FLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            99988764 5567788899999999998877777  999999986 668999999999999999999999999998873

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.52  E-value=2.6e-12  Score=107.18  Aligned_cols=232  Identities=13%  Similarity=0.046  Sum_probs=196.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcC
Q 008022          309 SALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGC  388 (581)
Q Consensus       309 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  388 (581)
                      ..+..+|.+.|.+.+|+..++...+.  .|-+.||..|.++|.+..+++.|+.++.+-.+. .|-+........+.+...
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence            56788999999999999999988776  456677888999999999999999999998876 366666667788888899


Q ss_pred             CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHH
Q 008022          389 GRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLL  468 (581)
Q Consensus       389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  468 (581)
                      ++.++|.++|+...+.. +.+++....+...|.-.++++-|+..++.+...| ..++..|+.+.-+|.-.++++-++..|
T Consensus       304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHHH
Confidence            99999999999998765 4567777777888888999999999999999998 458889999999999999999999999


Q ss_pred             HHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          469 GKMLIEGTKL--DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       469 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      ++.+..-..|  -..+|..+.......||+.-|.+.|+-+..   .+| +..+++.|...-.+.|++++|..+++.+.. 
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~---~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s-  457 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT---SDAQHGEALNNLAVLAARSGDILGARSLLNAAKS-  457 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc---cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh-
Confidence            9998764333  456789999999999999999999999887   234 677899999888999999999999999876 


Q ss_pred             CCCCC
Q 008022          546 GICPN  550 (581)
Q Consensus       546 ~~~~~  550 (581)
                       +.|+
T Consensus       458 -~~P~  461 (478)
T KOG1129|consen  458 -VMPD  461 (478)
T ss_pred             -hCcc
Confidence             3454

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=3.5e-09  Score=96.27  Aligned_cols=454  Identities=14%  Similarity=0.098  Sum_probs=241.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 008022           32 VFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALC  111 (581)
Q Consensus        32 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  111 (581)
                      .+..=++.+...|++++|.+...++...+ +.+...+..-+.++++.+.|++|+.+.+.-...  ..+...+..-.-+..
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y   90 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY   90 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence            33444555666777777777777777655 345556666666677777777777544332211  111111112223334


Q ss_pred             hcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-CCCcchHHHHHHHHHh-cCChhHHHHHHH
Q 008022          112 KNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF-GSGVSVYNALINGLCK-EHKIEEAFWLLC  189 (581)
Q Consensus       112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~l~~~~~~-~~~~~~a~~~~~  189 (581)
                      +.+..++|+..++-....    +..+...-...+.+.|++++|..+++.+ ..+...+...+++-+. .+-.-.+ +   
T Consensus        91 rlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~-~---  162 (652)
T KOG2376|consen   91 RLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV-Q---  162 (652)
T ss_pred             HcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH-H---
Confidence            677777777777622211    2234455556667777777777777777 4444433333322111 1100111 1   


Q ss_pred             HHHHCCCCCCcccHHHHH---HHHHccCChhHHHHHHHHHHHcC-------CCCC-------cccHHHHHHHHHccCCHH
Q 008022          190 EMVDRGIDPNVITYSTII---SSLCDVGNVETSLGILGQMFVRG-------CNPN-------IHSFTSLLKGYLLGGRTH  252 (581)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~~~~~  252 (581)
                      .+......| ..+|..+.   ..+...|++.+|+++++.....+       ..-+       ...-..+..++-..|+..
T Consensus       163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~  241 (652)
T KOG2376|consen  163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA  241 (652)
T ss_pred             HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence            122222222 33444333   34556788888888877762211       0000       011223555666788899


Q ss_pred             HHHHHHHHHHhCCCCCCHHh----HHHHHHHHHhcCCh-h-hHHHHHHHHHhCCC----------CCcHHhHH-HHHHHH
Q 008022          253 EASDLWNRMIREGFLPNVVA----YSTLIHGLCSNGSM-D-EAVSVSYQMEENSC----------PPNVTTYS-ALIDGF  315 (581)
Q Consensus       253 ~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~-~-~a~~~~~~~~~~~~----------~~~~~~~~-~l~~~~  315 (581)
                      +|..++..+.+.... |...    .|.|+.. ....++ + .++..++.......          .......+ .++..|
T Consensus       242 ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~  319 (652)
T KOG2376|consen  242 EASSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF  319 (652)
T ss_pred             HHHHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988888877532 3322    2233222 111111 1 11112111111000          00111111 122222


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH-HH-HccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHH
Q 008022          316 AKAGNLLGASQIWNRMISNGCSPNVVAYTCMVK-VL-CQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDW  393 (581)
Q Consensus       316 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  393 (581)
                        .+..+.+.++-....  +..|... +..++. +. ++...+..+..++..........+..+.-..++.....|+++.
T Consensus       320 --tnk~~q~r~~~a~lp--~~~p~~~-~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~  394 (652)
T KOG2376|consen  320 --TNKMDQVRELSASLP--GMSPESL-FPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV  394 (652)
T ss_pred             --hhhHHHHHHHHHhCC--ccCchHH-HHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence              222333333332221  1223332 333333 22 2233577788888877765422234556667788889999999


Q ss_pred             HHHHHH--------HHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCcccHHH----HHHHHHHHHhcC
Q 008022          394 AMKLLD--------QMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC--GIQLNIVT----YNTILHGVCRAG  459 (581)
Q Consensus       394 a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~----~~~l~~~~~~~~  459 (581)
                      |.+++.        .+.+.+..|-  +...+...+.+.++.+.|..++.+....  .-.+....    +..++..-.+.|
T Consensus       395 A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G  472 (652)
T KOG2376|consen  395 ALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG  472 (652)
T ss_pred             HHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence            999999        5555554443  4455667777777777777777766532  01122222    333333445679


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +.++|..+++++.+.+ ++|..+...++.+|++. |++.|..+-+.+..
T Consensus       473 ~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p  519 (652)
T KOG2376|consen  473 NEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPP  519 (652)
T ss_pred             chHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence            9999999999999875 77899999999999876 88899888877654

>PRK12370 invasion protein regulator; Provisional

Probab=99.51  E-value=1.2e-11  Score=120.93  Aligned_cols=215  Identities=13%  Similarity=0.071  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHH---------ccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCCh
Q 008022          321 LLGASQIWNRMISNGCSPNVVAYTCMVKVLC---------QNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRV  391 (581)
Q Consensus       321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  391 (581)
                      .++|...|++..+..+. +...+..+..++.         ..+++++|...+++....+ |.+...+..+...+...|++
T Consensus       277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence            45677777776665322 2334444443332         2234677777777777664 55666777777777777778


Q ss_pred             HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022          392 DWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKM  471 (581)
Q Consensus       392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  471 (581)
                      ++|...|++..+.+ +.+...+..+...+...|++++|...++...+.. +.+...+..++..+...|++++|...++++
T Consensus       355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~  432 (553)
T PRK12370        355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDEL  432 (553)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence            88888887777665 3345566667777777788888888887777653 222223333344455577777787777777


Q ss_pred             HHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          472 LIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       472 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      .....+.++..+..++.++...|++++|...+.++..   ..|+ ....+.+...|...|  ++|...++++.+
T Consensus       433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            6653222444566677777777888888887777665   2343 334455555666666  466666666644

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=2.7e-09  Score=97.01  Aligned_cols=120  Identities=11%  Similarity=0.042  Sum_probs=68.6

Q ss_pred             HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCH
Q 008022           72 LDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQV  151 (581)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  151 (581)
                      ++.+...+++++|.+....+...+ +.+...+..-+.++.+.++|++|+.+.+.-...  ..+..-+..-+-+..+.+..
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~   95 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL   95 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence            455666777778887777777665 556666667677777778888777555432211  10111111122333456666


Q ss_pred             HHHHHHHHHh-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 008022          152 EEARELAMRF-GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDR  194 (581)
Q Consensus       152 ~~a~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  194 (581)
                      ++|+..++.. +.+..+...-.+.+.+.+++++|+.+|+.+.++
T Consensus        96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn  139 (652)
T KOG2376|consen   96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN  139 (652)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            6666666644 223334444555566666666666666666555

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=3.5e-09  Score=91.87  Aligned_cols=302  Identities=14%  Similarity=0.060  Sum_probs=224.1

Q ss_pred             CCCHHhHHHHHHH--HHhcCChhhHHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hh
Q 008022          267 LPNVVAYSTLIHG--LCSNGSMDEAVSVSYQMEENS-CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNV-VA  342 (581)
Q Consensus       267 ~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~  342 (581)
                      .|........+.+  .+-.++...+...+-.+.... ++.|......+..++...|+..+|+..|++....+  |+. ..
T Consensus       191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~  268 (564)
T KOG1174|consen  191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEA  268 (564)
T ss_pred             CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhh
Confidence            3333333333433  334455556655555554433 67788899999999999999999999999987653  332 23


Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 008022          343 YTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLR  422 (581)
Q Consensus       343 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  422 (581)
                      .......+.+.|++++...+...+.... .-....|-.-........++..|+.+-++.++.+ +.+...+..-...+..
T Consensus       269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~  346 (564)
T KOG1174|consen  269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA  346 (564)
T ss_pred             HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence            3334455677888888888877776542 2233333333444456678999999998888765 3355566666778889


Q ss_pred             cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH-HHHH-hcCCHHHHH
Q 008022          423 VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIII-YAYC-KQGKVNNAI  500 (581)
Q Consensus       423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~  500 (581)
                      .+++++|.-.|+...... |.+..+|..|+.+|...|.+.+|.-+-+...+. ++.+..++..++ ..+. ...--++|.
T Consensus       347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK  424 (564)
T KOG1174|consen  347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK  424 (564)
T ss_pred             ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence            999999999999988763 568899999999999999999999988887765 355666666663 3333 333468899


Q ss_pred             HHHHHHhcCCCCCCCH-HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          501 QLLDRIRGGGEWNPDI-ISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       501 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      +++++...   ++|+. ...+.+...+...|..++++.++++.+.  ..||......+.+.+...+.+.+|.+.+...+.
T Consensus       425 kf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  425 KFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            99999888   67864 4677888889999999999999999987  578999999999999999999999998887765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.49  E-value=2.6e-11  Score=106.18  Aligned_cols=196  Identities=12%  Similarity=0.031  Sum_probs=83.4

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 008022          342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLL  421 (581)
Q Consensus       342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  421 (581)
                      .+..+...+...|++++|...+++..... |.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence            34444444555555555555555544332 3333444444444444555555555554444432 122233344444444


Q ss_pred             hcCCHHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 008022          422 RVNRVKEAFELVTEIEKCGI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAI  500 (581)
Q Consensus       422 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  500 (581)
                      ..|++++|.+.++....... +.....+..+...+...|++++|...+++..... +.+...+..++..+...|++++|.
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence            44444444444444443211 1122233333444444444444444444444432 222333444444444444444444


Q ss_pred             HHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022          501 QLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKM  542 (581)
Q Consensus       501 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (581)
                      ..++++.+..  +++...+..++..+...|+.++|..+.+.+
T Consensus       190 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  229 (234)
T TIGR02521       190 AYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQL  229 (234)
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4444444310  112333333444444444444444444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.48  E-value=3.6e-11  Score=117.59  Aligned_cols=251  Identities=14%  Similarity=0.127  Sum_probs=178.4

Q ss_pred             ChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHH---------hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 008022          285 SMDEAVSVSYQMEENSCPPNVTTYSALIDGFA---------KAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM  355 (581)
Q Consensus       285 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  355 (581)
                      +.++|...+++..+.. |.+...+..+..++.         ..+++++|...++++.+..+. +...+..+...+...|+
T Consensus       276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence            3567888888887764 334555655555443         224478899999998887543 66777788888889999


Q ss_pred             hhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008022          356 FHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTE  435 (581)
Q Consensus       356 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  435 (581)
                      +++|...+++....+ |.+...+..+..++...|++++|...+++..+.+.. +...+..++..+...|++++|...+++
T Consensus       354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            999999999998875 667778888889999999999999999999887622 222333444456668899999999999


Q ss_pred             HHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC
Q 008022          436 IEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD  515 (581)
Q Consensus       436 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~  515 (581)
                      +.+...+.++..+..+..++...|++++|...+.++.... +.+....+.+...|...|  ++|...++.+.+.....|.
T Consensus       432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~  508 (553)
T PRK12370        432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN  508 (553)
T ss_pred             HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence            8765323345567777888889999999999998876642 234445566667777777  4788877777664444443


Q ss_pred             HHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          516 IISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      ...+  +...+.-.|+.+.+..+ +++.+.
T Consensus       509 ~~~~--~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        509 NPGL--LPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             CchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence            3333  33345556776666666 777654

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.47  E-value=1.1e-11  Score=103.47  Aligned_cols=234  Identities=11%  Similarity=0.032  Sum_probs=192.5

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 008022          274 STLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQN  353 (581)
Q Consensus       274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  353 (581)
                      +.+..+|.+.|-+.+|.+.++...+.  .|-+.||..+-.+|.+..++..|+.++.+-.+. ++-|+.....+.+.+...
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence            45778888999999999988887775  456778888889999999999999999887775 223444455677888888


Q ss_pred             CChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 008022          354 NMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELV  433 (581)
Q Consensus       354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  433 (581)
                      ++.++|.++++...+.. +.+......+...|.-.++++.|..+|+++.+.|+. +...|+.+.-+|.-.++++-++.-|
T Consensus       304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence            99999999999988775 667777777788888889999999999999999854 8888999988999999999999999


Q ss_pred             HHHHHcCCccc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 008022          434 TEIEKCGIQLN--IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE  511 (581)
Q Consensus       434 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  511 (581)
                      +.....--.|+  ...|-.+.......||+.-|.+.|+-.+..+ ..+...++.|+-.-.+.|++++|..++..+..   
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s---  457 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS---  457 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh---
Confidence            98876543344  3456677777778899999999999998875 55788999999999999999999999999988   


Q ss_pred             CCCCH
Q 008022          512 WNPDI  516 (581)
Q Consensus       512 ~~p~~  516 (581)
                      +.|+.
T Consensus       458 ~~P~m  462 (478)
T KOG1129|consen  458 VMPDM  462 (478)
T ss_pred             hCccc
Confidence            55653

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.46  E-value=8e-11  Score=103.10  Aligned_cols=198  Identities=14%  Similarity=0.044  Sum_probs=130.6

Q ss_pred             hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 008022          375 TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG  454 (581)
Q Consensus       375 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  454 (581)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            4555666677777777777777777776543 3345566666777777777777777777777653 4455566666777


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCH
Q 008022          455 VCRAGMVVEAFQLLGKMLIEGT-KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGM  532 (581)
Q Consensus       455 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~  532 (581)
                      +...|++++|.+.++++..... +.....+..++.++...|++++|.+.+.++..   ..| +...+..++..+...|++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~  185 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRGQY  185 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcCCH
Confidence            7777777777777777776421 22344566667777777777777777777776   234 455666777777777777


Q ss_pred             HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022          533 QEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM  578 (581)
Q Consensus       533 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  578 (581)
                      ++|...++++.+. .+++...+..+...+...|+.++|..+.+.+.
T Consensus       186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            7777777777664 23344555555666666777777777666554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.43  E-value=2.6e-09  Score=102.86  Aligned_cols=179  Identities=13%  Similarity=-0.018  Sum_probs=106.9

Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 008022           11 IDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSN   90 (581)
Q Consensus        11 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   90 (581)
                      ...|+..|-+..+.++. =...|..+...|....+...|.+.|+.+...+. .+...+......|++..+++.|..+.-.
T Consensus       474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            55566666665555443 344666777777777777777777777766543 4566677777777777777777766333


Q ss_pred             HHhCCCCCChh--hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCC
Q 008022           91 MKRDGMEPNVF--TYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSG  164 (581)
Q Consensus        91 ~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~  164 (581)
                      ..+.. +.-..  -|..+.-.+...++...|..-|+...+..+ .|...|..+..+|.+.|++..|.+.|.+.    |.+
T Consensus       552 ~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s  629 (1238)
T KOG1127|consen  552 AAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS  629 (1238)
T ss_pred             Hhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh
Confidence            32221 11111  222234445566777777777777666532 26667777777777777777777777666    222


Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008022          165 VSVYNALINGLCKEHKIEEAFWLLCEMVD  193 (581)
Q Consensus       165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  193 (581)
                      ...--......+..|.+.++...+.....
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            22222233344566777777776666543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.41  E-value=5.3e-08  Score=92.21  Aligned_cols=360  Identities=15%  Similarity=0.128  Sum_probs=223.2

Q ss_pred             CHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-C-------CCC
Q 008022           29 SEGVFISVIN--SYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRD-G-------MEP   98 (581)
Q Consensus        29 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-------~~~   98 (581)
                      ++.+...++.  .|..-|+.+.|.+-.+.+..      ..+|..+.+.|.+.++++-|.-++..|... |       .+.
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~  798 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN  798 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            5555555554  46778999999988887754      468999999999999999998888777543 1       111


Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh--CCCcchHHHHHHHHH
Q 008022           99 NVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF--GSGVSVYNALINGLC  176 (581)
Q Consensus        99 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~l~~~~~  176 (581)
                      +...=..+.......|..++|..+|.+-++.         ..|-..|...|.+++|.++.+.-  -.-..+|......+-
T Consensus       799 ~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le  869 (1416)
T KOG3617|consen  799 GEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLE  869 (1416)
T ss_pred             CcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence            1122233444455889999999999988764         34556788899999999987765  222456777777778


Q ss_pred             hcCChhHHHHHHHHHHHCCC-------------------CCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccc
Q 008022          177 KEHKIEEAFWLLCEMVDRGI-------------------DPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHS  237 (581)
Q Consensus       177 ~~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  237 (581)
                      ..++.+.|++.|++.....+                   ..|...|.-....+-..|+.+.|+.+|....         -
T Consensus       870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D  940 (1416)
T KOG3617|consen  870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------D  940 (1416)
T ss_pred             hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------h
Confidence            88899999988876422100                   1122223223333344566666666665543         2


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 008022          238 FTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK  317 (581)
Q Consensus       238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (581)
                      |-++++..+-.|+.++|.++-++-      -|......|.+.|-..|++.+|..+|.+.+.         +...|+.|-.
T Consensus       941 ~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKE 1005 (1416)
T KOG3617|consen  941 YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKE 1005 (1416)
T ss_pred             hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHh
Confidence            455666677788888888776542      2666677888999999999999998877653         3333333322


Q ss_pred             cC---------------CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHH--------HhhC--CCC
Q 008022          318 AG---------------NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEK--------MAFE--NCP  372 (581)
Q Consensus       318 ~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~  372 (581)
                      .+               +.-.|.++|++.-   .     -....+..|-+.|.+.+|+++--.        ++..  ...
T Consensus      1006 nd~~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred             cCHHHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence            22               2222333333221   0     112234456667777766665221        1111  223


Q ss_pred             CChhhHHHHHHHhhcCCChHHHHHHHHHHhh----------CCC----------------CCCh----hhHHHHHHHHHh
Q 008022          373 PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ----------YEC----------------LPNI----TTYNELLDGLLR  422 (581)
Q Consensus       373 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~----------------~~~~----~~~~~l~~~~~~  422 (581)
                      .|+...+...+.++...++++|..++-...+          .++                .|+.    ..+..+...|.+
T Consensus      1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred             CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence            5667777777777777777777776654322          111                1222    234556677788


Q ss_pred             cCCHHHHHHHHHH
Q 008022          423 VNRVKEAFELVTE  435 (581)
Q Consensus       423 ~~~~~~a~~~~~~  435 (581)
                      +|.+..|-+-|.+
T Consensus      1158 QG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQ 1170 (1416)
T ss_pred             ccchHHHHHHHhh
Confidence            8887777665544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.40  E-value=4.6e-10  Score=89.56  Aligned_cols=203  Identities=14%  Similarity=0.002  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022           31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKAL  110 (581)
Q Consensus        31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (581)
                      .+...+.-.|.+.|++..|..-+++.++..+ .+..+|..+...|.+.|+.+.|.+.|++..+.. +.+..+.|.....+
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL  113 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence            4677889999999999999999999998765 667789999999999999999999999999886 66778899999999


Q ss_pred             HhcCChhHHHHHHHHHhhCCCCC-CcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHH
Q 008022          111 CKNNRVDGAYKLLVEMGNKGCAP-DAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAF  185 (581)
Q Consensus       111 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~  185 (581)
                      +.+|++++|...|++....-.-+ -..+|..+.-+..+.|+++.|...+++.    |....+...+.....+.|++-.|.
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence            99999999999999988763222 3457888888889999999999999887    777888888899999999999999


Q ss_pred             HHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccH
Q 008022          186 WLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSF  238 (581)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  238 (581)
                      ..++.....+. ++..+....|+.--..|+.+.+.+.=.++...  .|...-+
T Consensus       194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~  243 (250)
T COG3063         194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEY  243 (250)
T ss_pred             HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHH
Confidence            99988888765 78888888888888889888887776666655  4554443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.40  E-value=1.2e-08  Score=95.28  Aligned_cols=396  Identities=15%  Similarity=0.088  Sum_probs=193.5

Q ss_pred             HhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh--CCCcchHHHHHHHHHhcCChhHHHHHH
Q 008022          111 CKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF--GSGVSVYNALINGLCKEHKIEEAFWLL  188 (581)
Q Consensus       111 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~  188 (581)
                      .-.+++.+|..+|-+-         ......+.+|....++++++.+.+..  |.-...-.+.++++...|+-+.|-++-
T Consensus       542 il~kkfk~ae~ifleq---------n~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk  612 (1636)
T KOG3616|consen  542 ILEKKFKEAEMIFLEQ---------NATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELK  612 (1636)
T ss_pred             HHHhhhhHHHHHHHhc---------ccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence            3445666666665432         11234566777777788887776655  222333455566666677766665432


Q ss_pred             HHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC---
Q 008022          189 CEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREG---  265 (581)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---  265 (581)
                          .    .+..+. ..|..|.+.|.+..|.+....=..  +..|......+..++.+..-+++|-++|+++..-.   
T Consensus       613 ----~----sdgd~l-aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkal  681 (1636)
T KOG3616|consen  613 ----E----SDGDGL-AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKAL  681 (1636)
T ss_pred             ----c----ccCccH-HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHH
Confidence                1    122332 457778888877766654322111  12244444444444555555555555555443210   


Q ss_pred             -------------------CCCCHHh-HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHH
Q 008022          266 -------------------FLPNVVA-YSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGAS  325 (581)
Q Consensus       266 -------------------~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  325 (581)
                                         ++....+ -......+...|+++.|+..|-+..         .....+.+-.....|..|+
T Consensus       682 e~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai  752 (1636)
T KOG3616|consen  682 ECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAI  752 (1636)
T ss_pred             HHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhH
Confidence                               0000000 0001111222233333332221111         1122233344455566666


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCC
Q 008022          326 QIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYE  405 (581)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  405 (581)
                      .+++.+.....  ...-|..+...|...|+++.|.++|.+.         ..++..|.+|.+.|+++.|.++-.+...  
T Consensus       753 ~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~--  819 (1636)
T KOG3616|consen  753 SILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG--  819 (1636)
T ss_pred             hHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC--
Confidence            66666555421  2233455556666666666666666442         2244455666666666666665544432  


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008022          406 CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNI  485 (581)
Q Consensus       406 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  485 (581)
                      .......|..-..-+-++|++.+|.+++-.+.    .|+.     .+..|-+.|..+..+++.++-..   ..-..|...
T Consensus       820 ~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~  887 (1636)
T KOG3616|consen  820 PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKH  887 (1636)
T ss_pred             chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHH
Confidence            22233344444445556666666666554332    2332     24456666666666666555432   112344556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcc
Q 008022          486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNL  565 (581)
Q Consensus       486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  565 (581)
                      +..-|-..|+...|..-|-++.+          |..-+..|...+.|++|-++-+.   .| ..|..-  +++....++-
T Consensus       888 f~~e~e~~g~lkaae~~flea~d----------~kaavnmyk~s~lw~dayriakt---eg-g~n~~k--~v~flwaksi  951 (1636)
T KOG3616|consen  888 FAKELEAEGDLKAAEEHFLEAGD----------FKAAVNMYKASELWEDAYRIAKT---EG-GANAEK--HVAFLWAKSI  951 (1636)
T ss_pred             HHHHHHhccChhHHHHHHHhhhh----------HHHHHHHhhhhhhHHHHHHHHhc---cc-cccHHH--HHHHHHHHhh
Confidence            66667777777777766655544          33444556666666666554332   22 122222  2222333433


Q ss_pred             CCCChHHHHHH
Q 008022          566 GHLGPVYILDD  576 (581)
Q Consensus       566 ~~~~a~~~~~~  576 (581)
                      .-+.|.+++++
T Consensus       952 ggdaavkllnk  962 (1636)
T KOG3616|consen  952 GGDAAVKLLNK  962 (1636)
T ss_pred             CcHHHHHHHHh
Confidence            44566676664

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.39  E-value=3.1e-09  Score=100.24  Aligned_cols=290  Identities=18%  Similarity=0.151  Sum_probs=170.6

Q ss_pred             HHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHH-c--
Q 008022          140 TIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLC-D--  212 (581)
Q Consensus       140 ~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~--  212 (581)
                      .....+...|++++|++.+...    .............+.+.|+.++|..++..+.+.+  |+...|...+..+. -  
T Consensus         9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen    9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence            3455667778888888887776    3445556667778888888888888888888773  45555444433333 1  


Q ss_pred             ---cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHH-HHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 008022          213 ---VGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTH-EASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDE  288 (581)
Q Consensus       213 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  288 (581)
                         ..+.+....+++++...  .|...+...+.-.+.....+. .+..++..+...|+++   +|+.+-..|.......-
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~  161 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI  161 (517)
T ss_pred             ccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence               12456667777777665  344444444433333323332 3445555666666442   34444444544444343


Q ss_pred             HHHHHHHHHhC----C----------CCCcH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 008022          289 AVSVSYQMEEN----S----------CPPNV--TTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ  352 (581)
Q Consensus       289 a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  352 (581)
                      ...++......    +          -+|+.  .++..+...|...|++++|.+..+..++..+. .+..|..-.+.+-.
T Consensus       162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh  240 (517)
T PF12569_consen  162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKH  240 (517)
T ss_pred             HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence            44444443321    1          12333  23345566666777777777777777776322 24566666677777


Q ss_pred             cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChh------hH--HHHHHHHHhcC
Q 008022          353 NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNIT------TY--NELLDGLLRVN  424 (581)
Q Consensus       353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~~  424 (581)
                      .|++.+|...++...... ..|..+-+..+..+.+.|++++|.+++......+..|-..      .|  .....+|.+.|
T Consensus       241 ~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~  319 (517)
T PF12569_consen  241 AGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG  319 (517)
T ss_pred             CCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            777777777777777664 4566666667777777777777777777776544322211      11  23345666777


Q ss_pred             CHHHHHHHHHHHHH
Q 008022          425 RVKEAFELVTEIEK  438 (581)
Q Consensus       425 ~~~~a~~~~~~~~~  438 (581)
                      ++..|++.|..+.+
T Consensus       320 ~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  320 DYGLALKRFHAVLK  333 (517)
T ss_pred             hHHHHHHHHHHHHH
Confidence            77777777766654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.37  E-value=2.5e-07  Score=89.72  Aligned_cols=129  Identities=11%  Similarity=0.100  Sum_probs=83.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhh
Q 008022           29 SEGVFISVINSYRRVGLAEQALKMFYRIREFG------LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFT  102 (581)
Q Consensus        29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  102 (581)
                      ++.-+..+++.|-+.|-+..|++.+.++....      ...+++    .+..+.-.-.++.+.++++.|...++..|..+
T Consensus       605 tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pE----wLv~yFg~lsve~s~eclkaml~~NirqNlQi  680 (1666)
T KOG0985|consen  605 THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPE----WLVNYFGSLSVEDSLECLKAMLSANIRQNLQI  680 (1666)
T ss_pred             ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHH----HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHH
Confidence            33346667888888888888887776654310      001111    12334444567778888888888777777766


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhC-----------CCCCCcchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022          103 YNILLKALCKNNRVDGAYKLLVEMGNK-----------GCAPDAVSYTTIVSSICKLGQVEEARELAMRF  161 (581)
Q Consensus       103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  161 (581)
                      ...+..-|..+=-.+...++|+..+..           ++.-|+......|.+.++.|++.+..++.+..
T Consensus       681 ~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicres  750 (1666)
T KOG0985|consen  681 VVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRES  750 (1666)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhcc
Confidence            666666666655556666666665442           24557777778888888888888887775543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=2.6e-09  Score=88.52  Aligned_cols=313  Identities=11%  Similarity=0.077  Sum_probs=140.3

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHH-HHHHHHH
Q 008022           68 YNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYT-TIVSSIC  146 (581)
Q Consensus        68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~  146 (581)
                      +.+++..+.+..++..|++++..-.+.. +.+......+..+|....++..|-..++++-..  .|...-|. .-...+.
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY   89 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence            3444444455555555555555544443 224444455555555555555555555555443  22222221 1223344


Q ss_pred             ccCCHHHHHHHHHHhCCCcchHHHHHH----HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHH
Q 008022          147 KLGQVEEARELAMRFGSGVSVYNALIN----GLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGI  222 (581)
Q Consensus       147 ~~g~~~~a~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  222 (581)
                      +.+.+..|+.+...+..+....+..++    .....+++..+..+.+.....   -+..+.+.......+.|+++.|.+-
T Consensus        90 ~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk  166 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK  166 (459)
T ss_pred             HhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence            445555555555555333333332222    122344444444444443321   1233333333344455555555555


Q ss_pred             HHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHh----HHHHHHHHHhcCChhhHHHHHHHHHh
Q 008022          223 LGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVA----YSTLIHGLCSNGSMDEAVSVSYQMEE  298 (581)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~  298 (581)
                      |+...+.+--.....|+..+. ..+.++.+.|++...++.++|++..+..    ....+++    +.....+.+.    .
T Consensus       167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv----rsvgNt~~lh----~  237 (459)
T KOG4340|consen  167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV----RSVGNTLVLH----Q  237 (459)
T ss_pred             HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch----hcccchHHHH----H
Confidence            555544432223333333322 2344555555555555555544321110    0000000    0000000000    0


Q ss_pred             CCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhh
Q 008022          299 NSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISN-GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVT  377 (581)
Q Consensus       299 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  377 (581)
                      +   .-...++.-...+.+.++++.|.+.+-.|..+ ....|+.|...+.-. -..+++.....-+.-+...+ |-...+
T Consensus       238 S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ET  312 (459)
T KOG4340|consen  238 S---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPET  312 (459)
T ss_pred             H---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHH
Confidence            0   00112333333455677777777777766443 223355555444322 12344555555555555553 456677


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHH
Q 008022          378 FNTFIKGLCGCGRVDWAMKLLDQ  400 (581)
Q Consensus       378 ~~~l~~~~~~~~~~~~a~~~~~~  400 (581)
                      |..++-.||+..-++.|-.++.+
T Consensus       313 FANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  313 FANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHHHHHhhhHHHhHHHHHHhh
Confidence            88888888888777777776654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.36  E-value=1.7e-09  Score=86.40  Aligned_cols=208  Identities=16%  Similarity=0.020  Sum_probs=162.1

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 008022          342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLL  421 (581)
Q Consensus       342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  421 (581)
                      +...+.-.|.+.|++..|..-+++.++.. |.+..++..+...|.+.|+.+.|.+.|++..+.. +.+....|.....++
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            34456667888899999999998888875 6677888888888999999999999999888766 446667888888888


Q ss_pred             hcCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 008022          422 RVNRVKEAFELVTEIEKCG-IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAI  500 (581)
Q Consensus       422 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  500 (581)
                      ..|++++|...|+.....- ...-..+|..+.-+..+.|+++.|...|++.+... +..+.+...+.......|++-.|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence            8999999999998887642 22235677788888888999999999999998875 445666778888888899999999


Q ss_pred             HHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 008022          501 QLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNV  556 (581)
Q Consensus       501 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  556 (581)
                      .++++.....+  ++..++...++.-...|+.+.+-++=.++..  .-|....+..
T Consensus       194 ~~~~~~~~~~~--~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~  245 (250)
T COG3063         194 LYLERYQQRGG--AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQT  245 (250)
T ss_pred             HHHHHHHhccc--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHh
Confidence            99998887444  7777777777777788888888777666665  3566555443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.33  E-value=3e-08  Score=95.87  Aligned_cols=153  Identities=10%  Similarity=0.034  Sum_probs=112.6

Q ss_pred             hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCcch
Q 008022            5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLK-PTVKIYNHILDALLAENRFSM   83 (581)
Q Consensus         5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~   83 (581)
                      |..-.|.-.|.+.|+...+-+.. +..........|++..+++.|..+.-...+..+. .-...|....-.+.+.++...
T Consensus       502 Yrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~  580 (1238)
T KOG1127|consen  502 YRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHG  580 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhh
Confidence            33444677888888888887655 7888889999999999999999985444332210 111233334445677889999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-cchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022           84 INPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPD-AVSYTTIVSSICKLGQVEEARELAMRF  161 (581)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~  161 (581)
                      +..-|+...+.. |.|...|..+..+|.+.|++..|.++|......  .|+ ....-...-..+..|.+.+|+..+..+
T Consensus       581 aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~i  656 (1238)
T KOG1127|consen  581 AVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLI  656 (1238)
T ss_pred             HHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            999999999876 678889999999999999999999999888765  232 222223345567789999999887776

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=1.1e-06  Score=85.57  Aligned_cols=183  Identities=9%  Similarity=0.072  Sum_probs=87.8

Q ss_pred             hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 008022          375 TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG  454 (581)
Q Consensus       375 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  454 (581)
                      +..|+.+..+-...|.+.+|++-|-+.      .|+..|..++....+.|.+++-.+.+...++..-.|...+  .++-+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFA 1175 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHH
Confidence            445555666655556655555544222      2444555666666666666666666655555443333332  44555


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------------------CCCCCCC
Q 008022          455 VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG-------------------GGEWNPD  515 (581)
Q Consensus       455 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~p~  515 (581)
                      |++.++..+.++++       ..|+......++.-|...|.++.|.-++..+..                   ......+
T Consensus      1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred             HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            55555555544333       134444444444444444444444444332221                   0000012


Q ss_pred             HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHH
Q 008022          516 IISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDI  577 (581)
Q Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  577 (581)
                      ..+|...-.+|...+.+.-|     +|-...+.--..-...++.-|-..|-++|-+.+++..
T Consensus      1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred             hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence            33444444444444433222     1211112233444556666666777777777776654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=4.8e-08  Score=88.16  Aligned_cols=249  Identities=13%  Similarity=0.074  Sum_probs=168.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHH-------
Q 008022          308 YSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNT-------  380 (581)
Q Consensus       308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------  380 (581)
                      ...+..+..+..++..+.+.+.......  -+..-++....+|...|.+...........+.|. .....++.       
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence            5567777778888888999888887764  3555566667778888888877777776665542 22222222       


Q ss_pred             HHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHhcC
Q 008022          381 FIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNI-VTYNTILHGVCRAG  459 (581)
Q Consensus       381 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~  459 (581)
                      +..+|.+.++++.++..|++.......|+.         ..+....+++........-.  .|.. .-...-...+.+.|
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~g  372 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKG  372 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhcc
Confidence            334666778899999999887654433332         22333445555555444332  2222 12222366778999


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHH
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIY  538 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~  538 (581)
                      ++..|...|.++++.. +.|...|...+-+|.+.|.+..|++-.+...+   +.|+ ...|..=+.++....++++|.+.
T Consensus       373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie---L~p~~~kgy~RKg~al~~mk~ydkAlea  448 (539)
T KOG0548|consen  373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE---LDPNFIKAYLRKGAALRAMKEYDKALEA  448 (539)
T ss_pred             CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999986 66888899999999999999999999999998   4564 55677677778888899999999


Q ss_pred             HHHHHHcCCCCCHHhHH-HHHHHHHhccCCCChHHHHHH
Q 008022          539 LQKMLNEGICPNFATWN-VLVRSLFSNLGHLGPVYILDD  576 (581)
Q Consensus       539 ~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~  576 (581)
                      |++.++.  .|+..-+. .+.++...........+..++
T Consensus       449 y~eale~--dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  449 YQEALEL--DPSNAEAIDGYRRCVEAQRGDETPEETKRR  485 (539)
T ss_pred             HHHHHhc--CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence            9999985  46654443 444444332333344444443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.32  E-value=2.8e-07  Score=87.56  Aligned_cols=487  Identities=13%  Similarity=0.085  Sum_probs=271.6

Q ss_pred             HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---------CCCCCHHHHHHHHHH
Q 008022            4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREF---------GLKPTVKIYNHILDA   74 (581)
Q Consensus         4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~~l~~~   74 (581)
                      -|..-|+.+.|.+-.+-+.      +..+|..+++.|.+..+.+-|.-.+-.|...         ...++ +.-..+...
T Consensus       737 fyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL  809 (1416)
T KOG3617|consen  737 FYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL  809 (1416)
T ss_pred             EEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence            3556788888888777555      5567888888888877777665544333210         01121 233334445


Q ss_pred             HHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHH
Q 008022           75 LLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEA  154 (581)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  154 (581)
                      ....|..++|+.+|.+..+         |..+=+.|-..|.+++|.++-+.-.+..+   ..||.....-+-..++.+.|
T Consensus       810 AieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~A  877 (1416)
T KOG3617|consen  810 AIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAA  877 (1416)
T ss_pred             HHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHH
Confidence            5677889999999988874         34455667778999999988765433322   24555666666777888888


Q ss_pred             HHHHHHh------------------------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 008022          155 RELAMRF------------------------GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSL  210 (581)
Q Consensus       155 ~~~~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (581)
                      ++.+++.                        ..+...|.-..+.+-..|+.+.|+.+|.....         |.++++..
T Consensus       878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~  948 (1416)
T KOG3617|consen  878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK  948 (1416)
T ss_pred             HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence            8887775                        22333444455555678888888888876554         45677788


Q ss_pred             HccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC--CC--CCHHhHHHHHHHHHhcC--
Q 008022          211 CDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREG--FL--PNVVAYSTLIHGLCSNG--  284 (581)
Q Consensus       211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~~--  284 (581)
                      |-.|+.++|-++-++      .-|..+...+.+.|-..|++.+|..+|.+.....  +.  .....-..|...+..+|  
T Consensus       949 C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen  949 CIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGS 1022 (1416)
T ss_pred             eeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCch
Confidence            889999999988765      3366777788999999999999999997754320  00  00000011111111121  


Q ss_pred             ChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHH--------HHHhCC--CCCChhhHHHHHHHHHccC
Q 008022          285 SMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWN--------RMISNG--CSPNVVAYTCMVKVLCQNN  354 (581)
Q Consensus       285 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~--~~~~~~~~~~l~~~~~~~~  354 (581)
                      +.-.|-++|++.--        .+......|.+.|.+.+|+++--        +++...  ...|+...+.-...++...
T Consensus      1023 d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1023 DLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred             hHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence            22223333332211        12233445666666666655421        112222  2234555555555566666


Q ss_pred             ChhHHHHHHHHHhh----------CCC----------------CCC----hhhHHHHHHHhhcCCChHHHHHHHHHHhhC
Q 008022          355 MFHQAHSLIEKMAF----------ENC----------------PPN----TVTFNTFIKGLCGCGRVDWAMKLLDQMKQY  404 (581)
Q Consensus       355 ~~~~a~~~~~~~~~----------~~~----------------~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  404 (581)
                      ++++|..++-...+          +++                .|+    ...+..+...|.+.|.+..|-+-|.+.-..
T Consensus      1095 qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK 1174 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK 1174 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH
Confidence            66666555432211          111                122    234566778888889888877666543210


Q ss_pred             CCCCChhhHHHHHHHHHhcCCHH----------------------------HHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q 008022          405 ECLPNITTYNELLDGLLRVNRVK----------------------------EAFELVTEIEKCGIQLNIVTYNTILHGVC  456 (581)
Q Consensus       405 ~~~~~~~~~~~l~~~~~~~~~~~----------------------------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  456 (581)
                               ...++++.+.|+.+                            .--++++.+...  -.....+..|...|.
T Consensus      1175 ---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tF--YTKgqafd~LanFY~ 1243 (1416)
T KOG3617|consen 1175 ---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETF--YTKGQAFDHLANFYK 1243 (1416)
T ss_pred             ---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhh--hhcchhHHHHHHHHH
Confidence                     11223333333332                            222222222110  001112222222221


Q ss_pred             ---------------hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH-----------hcCCHHHHHHHHHHHhcCC
Q 008022          457 ---------------RAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYC-----------KQGKVNNAIQLLDRIRGGG  510 (581)
Q Consensus       457 ---------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~g~~~~A~~~~~~~~~~~  510 (581)
                                     ..|-.++|.+++.++...+  .....++.|-.-..           -..|..+.+.-+..+.+..
T Consensus      1244 ~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep 1321 (1416)
T KOG3617|consen 1244 SCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEP 1321 (1416)
T ss_pred             HHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCc
Confidence                           1244555666666665443  11222322221111           1236666666666666633


Q ss_pred             CCC---CCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          511 EWN---PDIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       511 ~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      .++   |-...|..++..+....++..|-+.+++|..+
T Consensus      1322 ~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1322 ILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred             CCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence            221   12347888999999999999999999999775

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.32  E-value=1.3e-09  Score=101.52  Aligned_cols=199  Identities=16%  Similarity=0.049  Sum_probs=120.5

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHhh-----CCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-Cccc-H
Q 008022          380 TFIKGLCGCGRVDWAMKLLDQMKQ-----YEC--LPNITTYNELLDGLLRVNRVKEAFELVTEIEKC-----G-IQLN-I  445 (581)
Q Consensus       380 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~  445 (581)
                      .+...|...+++++|..+|+++..     .|.  +.-..+++.|..+|.+.|++++|...++...+-     + ..|. .
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~  325 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA  325 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence            455566666777777666666532     110  111235566666677777777776666654321     1 1122 1


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-----CCC
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIE---GTKLD----AITFNIIIYAYCKQGKVNNAIQLLDRIRGGG-----EWN  513 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~  513 (581)
                      ..++.+...|...+++++|..++++..+.   -+.++    ..+++.++..|...|++++|.++++++.+..     +..
T Consensus       326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~  405 (508)
T KOG1840|consen  326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD  405 (508)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence            23455666677777777777777766543   11122    3457777888888888888888887765421     112


Q ss_pred             C-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH----cCCC-CC-HHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022          514 P-DIISYTSLLWGICNSGGMQEAFIYLQKMLN----EGIC-PN-FATWNVLVRSLFSNLGHLGPVYILDDIM  578 (581)
Q Consensus       514 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  578 (581)
                      + ....++.+...|.+.+.+++|.++|.+...    .|.. |+ ..+|..|...|.+.|++++|+++.+.++
T Consensus       406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            2 234567777777777777777777776532    2221 23 3567778888888888888888777665

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=7.8e-08  Score=86.86  Aligned_cols=426  Identities=12%  Similarity=0.053  Sum_probs=213.7

Q ss_pred             HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022            4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM   83 (581)
Q Consensus         4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (581)
                      +.++.|+++.|..+|...+.-+++ |+..|..-..+|+..|++++|++=-...++..+ .-+..|.....++.-.|++++
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p-~w~kgy~r~Gaa~~~lg~~~e   88 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNP-DWAKGYSRKGAALFGLGDYEE   88 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC-chhhHHHHhHHHHHhcccHHH
Confidence            456789999999999999887765 888898899999999999999887777776554 335678888888888999999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHH-----HHHHccCCHHHHHHHH
Q 008022           84 INPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIV-----SSICKLGQVEEARELA  158 (581)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~  158 (581)
                      |+.-|.+-++.. +.+...+..+..++.    .+.+.     +..   .-++..|..+.     +.+...-.+-.-++.+
T Consensus        89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~  155 (539)
T KOG0548|consen   89 AILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILEII  155 (539)
T ss_pred             HHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence            999999888765 556666666666661    11111     110   01222222211     1111111122222222


Q ss_pred             HHhCCCcchHHHHHHHHHhcCChhHHHHHHHH-----HHHCCCCCCccc---HHHHHHHHHccCChhHHHHHHHHHHHcC
Q 008022          159 MRFGSGVSVYNALINGLCKEHKIEEAFWLLCE-----MVDRGIDPNVIT---YSTIISSLCDVGNVETSLGILGQMFVRG  230 (581)
Q Consensus       159 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~  230 (581)
                      ++.|.+...|       ....++..+...+..     ....|..+.+..   -.......-..++..+-.+.        
T Consensus       156 ~~~p~~l~~~-------l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~--------  220 (539)
T KOG0548|consen  156 QKNPTSLKLY-------LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRV--------  220 (539)
T ss_pred             hcCcHhhhcc-------cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHH--------
Confidence            2222211111       111111111111100     000000000000   00000000000000000000        


Q ss_pred             CCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHH-
Q 008022          231 CNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYS-  309 (581)
Q Consensus       231 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-  309 (581)
                       ..-..-...+.....+..++..+++-+....+..  .+..-++....+|...|.............+.|.. ....++ 
T Consensus       221 -k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~kl  296 (539)
T KOG0548|consen  221 -KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKL  296 (539)
T ss_pred             -HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHH
Confidence             0011223445566666677777777777766653  24444555666677777666666555554444311 111122 


Q ss_pred             ------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022          310 ------ALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIK  383 (581)
Q Consensus       310 ------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  383 (581)
                            .+..++.+.++++.++..|.+.......|+.         ..+....+++....+...-.+... ..-...-..
T Consensus       297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGn  366 (539)
T KOG0548|consen  297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGN  366 (539)
T ss_pred             HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHH
Confidence                  2223444556666666666665443322221         112222333433333332221111 111222244


Q ss_pred             HhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHH
Q 008022          384 GLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE  463 (581)
Q Consensus       384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  463 (581)
                      .+.+.|++..|++.|.+++... +.|...|....-+|.+.|.+..|++=.+..++.. ++....|..=..++....++++
T Consensus       367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydk  444 (539)
T KOG0548|consen  367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDK  444 (539)
T ss_pred             HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHH
Confidence            5566677777777777766655 4455566666666777777776666666665542 3334444444444555566666


Q ss_pred             HHHHHHHHHHCC
Q 008022          464 AFQLLGKMLIEG  475 (581)
Q Consensus       464 a~~~~~~~~~~~  475 (581)
                      |.+.|.+.++.+
T Consensus       445 Aleay~eale~d  456 (539)
T KOG0548|consen  445 ALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHhcC
Confidence            777766666653

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.31  E-value=4.5e-09  Score=93.97  Aligned_cols=227  Identities=14%  Similarity=-0.012  Sum_probs=144.8

Q ss_pred             CHHHHHHHHHHHHhCC-CCCC--hhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHH
Q 008022          320 NLLGASQIWNRMISNG-CSPN--VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMK  396 (581)
Q Consensus       320 ~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  396 (581)
                      ..+.++.-+.+++... ..|+  ...|..+...+...|++++|...|++..... |.++..|..+...+...|+++.|..
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            4455666666665432 1222  3456666677788888888888888887765 5667888888888888888888888


Q ss_pred             HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008022          397 LLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT  476 (581)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  476 (581)
                      .|+...+.. +.+...+..+..++...|++++|.+.++...+..  |+..........+...+++++|...+.+..... 
T Consensus       120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-  195 (296)
T PRK11189        120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-  195 (296)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence            888887765 2245567777777888888888888888888753  332211222222345677888888887665432 


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC----C-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 008022          477 KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWN----P-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF  551 (581)
Q Consensus       477 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  551 (581)
                      .++...   ........|+...+ +.+..+.+.....    | ...+|..++..+...|++++|+..|+++++.. +|+.
T Consensus       196 ~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~  270 (296)
T PRK11189        196 DKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNF  270 (296)
T ss_pred             CccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchH
Confidence            222222   12233345555444 3444444321111    2 23578888888899999999999999988742 3455


Q ss_pred             HhHHH
Q 008022          552 ATWNV  556 (581)
Q Consensus       552 ~~~~~  556 (581)
                      .-+..
T Consensus       271 ~e~~~  275 (296)
T PRK11189        271 VEHRY  275 (296)
T ss_pred             HHHHH
Confidence            54443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.30  E-value=2.2e-07  Score=87.21  Aligned_cols=216  Identities=13%  Similarity=0.167  Sum_probs=114.5

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHH
Q 008022          174 GLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHE  253 (581)
Q Consensus       174 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  253 (581)
                      .+...|+++.|+.-|-+..         .....+.+......|.+|..+++.+...  +.....|..+...|...|+++.
T Consensus       715 hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~dfe~  783 (1636)
T KOG3616|consen  715 HLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKGDFEI  783 (1636)
T ss_pred             HHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccchhHHH
Confidence            3344555555555443321         1223345555666677777777766655  2234445566666777777777


Q ss_pred             HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008022          254 ASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMIS  333 (581)
Q Consensus       254 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  333 (581)
                      |.++|.+.-         .++..+.+|.+.|+++.|.++-.+..  +.......|-.-..-.-+.|++.+|+++|-.+..
T Consensus       784 ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~  852 (1636)
T KOG3616|consen  784 AEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE  852 (1636)
T ss_pred             HHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC
Confidence            777664321         24455666777777777766654433  2223344444445555566667666666544321


Q ss_pred             CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhH
Q 008022          334 NGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTY  413 (581)
Q Consensus       334 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  413 (581)
                          |+     ..+..|-+.|..+..+++.++-...   .-..+...+..-+...|+...|...|-+..+         |
T Consensus       853 ----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~  911 (1636)
T KOG3616|consen  853 ----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------F  911 (1636)
T ss_pred             ----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------H
Confidence                32     2345566666666666666554321   1123344455555566666666665543322         2


Q ss_pred             HHHHHHHHhcCCHHHHHHH
Q 008022          414 NELLDGLLRVNRVKEAFEL  432 (581)
Q Consensus       414 ~~l~~~~~~~~~~~~a~~~  432 (581)
                      ...+..|...+-+++|.++
T Consensus       912 kaavnmyk~s~lw~dayri  930 (1636)
T KOG3616|consen  912 KAAVNMYKASELWEDAYRI  930 (1636)
T ss_pred             HHHHHHhhhhhhHHHHHHH
Confidence            3334445445555554443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.28  E-value=4.1e-09  Score=98.17  Aligned_cols=237  Identities=21%  Similarity=0.172  Sum_probs=153.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCChh-hHHHHHHHHHccCChhHHHHHHHHHhhC-----C--CC
Q 008022          307 TYSALIDGFAKAGNLLGASQIWNRMISN-----G-CSPNVV-AYTCMVKVLCQNNMFHQAHSLIEKMAFE-----N--CP  372 (581)
Q Consensus       307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~  372 (581)
                      +...+...|...|+++.|+.+++...+.     | ..|... ..+.+...|...+++.+|..+|+++...     |  -+
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            3333445555555555555555444332     1 012222 2223556677777777777777776542     1  12


Q ss_pred             CChhhHHHHHHHhhcCCChHHHHHHHHHHhh-----CC-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCc
Q 008022          373 PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ-----YE-CLPNIT-TYNELLDGLLRVNRVKEAFELVTEIEKC---GIQ  442 (581)
Q Consensus       373 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~  442 (581)
                      .-..++..|..+|.+.|++++|...++...+     .+ ..|.+. .++.+...+...+++++|..+++...+.   -+.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence            2244566777778888888887777766532     11 112222 3456666777888999998888876532   112


Q ss_pred             c----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---
Q 008022          443 L----NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG----TK--L-DAITFNIIIYAYCKQGKVNNAIQLLDRIRG---  508 (581)
Q Consensus       443 ~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---  508 (581)
                      +    -..+++.+...|...|++++|.+++++++...    ..  + ....++.++..|.+.+.+++|.++|.+...   
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~  440 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK  440 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            2    24578889999999999999999999988541    11  1 234578889999999999988888887542   


Q ss_pred             -CCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022          509 -GGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       509 -~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                       -++-.|+ ..+|..|+..|...|++++|.++.+...
T Consensus       441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence             1222343 3478999999999999999999988875

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.27  E-value=5.7e-09  Score=93.31  Aligned_cols=97  Identities=15%  Similarity=0.070  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022           31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKAL  110 (581)
Q Consensus        31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (581)
                      ..|..+...|...|++++|...|++..+..+ .++..|+.+...+...|+++.|...|+...+.. +.+..++..+..++
T Consensus        65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l  142 (296)
T PRK11189         65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL  142 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3455555555555555555555555555443 344555555555555555555555555555443 23344445555555


Q ss_pred             HhcCChhHHHHHHHHHhhC
Q 008022          111 CKNNRVDGAYKLLVEMGNK  129 (581)
Q Consensus       111 ~~~~~~~~a~~~~~~~~~~  129 (581)
                      ...|++++|.+.++...+.
T Consensus       143 ~~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        143 YYGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHh
Confidence            5555555555555555543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.26  E-value=2.8e-08  Score=82.59  Aligned_cols=316  Identities=12%  Similarity=0.081  Sum_probs=202.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHH-HHHH
Q 008022           31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNI-LLKA  109 (581)
Q Consensus        31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~  109 (581)
                      .-+..++..+.+..+++.|++++..-.+.++ .+......+..+|....++..|-.+++++...  .|...-|.. -.+.
T Consensus        11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   11 GEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS   87 (459)
T ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            3456667777788889999988887776553 35566777778888888899999999998876  344444432 3466


Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCcch--HHHHHHHHHccCCHHHHHHHHHHhC--CCcchHHHHHHHHHhcCChhHHH
Q 008022          110 LCKNNRVDGAYKLLVEMGNKGCAPDAVS--YTTIVSSICKLGQVEEARELAMRFG--SGVSVYNALINGLCKEHKIEEAF  185 (581)
Q Consensus       110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~  185 (581)
                      +.+.+.+..|+++...|...   ++...  ...-.......+++..+..++++.|  .+..+.+...-...+.|++++|.
T Consensus        88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv  164 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV  164 (459)
T ss_pred             HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence            67888899999988887653   11111  1111122345678888888888885  45666666677777899999999


Q ss_pred             HHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHH----HHHHHccCCHHHHHHHHHHH
Q 008022          186 WLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSL----LKGYLLGGRTHEASDLWNRM  261 (581)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~  261 (581)
                      +-|....+.+--.....|+..+ +..+.|+.+.|++...+++++|+...+..-..+    +.+- ..|+.   .    .|
T Consensus       165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~----~l  235 (459)
T KOG4340|consen  165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---L----VL  235 (459)
T ss_pred             HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---H----HH
Confidence            9999988875443556776555 445778999999999999998865332211000    0000 00100   0    00


Q ss_pred             HhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 008022          262 IREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENS-CPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNV  340 (581)
Q Consensus       262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  340 (581)
                      ...+   -...+|.-...+.+.++++.|.+.+-.|..+. ...|+.|...+.-. -..+++.+..+-+.-+...++ ...
T Consensus       236 h~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~  310 (459)
T KOG4340|consen  236 HQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPP  310 (459)
T ss_pred             HHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CCh
Confidence            0000   12234444555677888888888877776443 33466665554322 123445555555555555544 345


Q ss_pred             hhHHHHHHHHHccCChhHHHHHHHHH
Q 008022          341 VAYTCMVKVLCQNNMFHQAHSLIEKM  366 (581)
Q Consensus       341 ~~~~~l~~~~~~~~~~~~a~~~~~~~  366 (581)
                      .|+..++-.||+..-++.|-+++.+-
T Consensus       311 ETFANlLllyCKNeyf~lAADvLAEn  336 (459)
T KOG4340|consen  311 ETFANLLLLYCKNEYFDLAADVLAEN  336 (459)
T ss_pred             HHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence            67888888899998888888887653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.22  E-value=1.8e-07  Score=79.51  Aligned_cols=307  Identities=14%  Similarity=0.121  Sum_probs=175.3

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHH---HHHHHccCCHHHHHHHHHHHHhCCCCCCHHh-HHHHHHHH
Q 008022          205 TIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSL---LKGYLLGGRTHEASDLWNRMIREGFLPNVVA-YSTLIHGL  280 (581)
Q Consensus       205 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~  280 (581)
                      -+...+...|++..|+.-|...++.    |+..|.++   ...|...|+...|+.-+.+.++.  +||... --.-...+
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence            3555566666666666666666544    23333332   34555666666666666666655  444432 11222345


Q ss_pred             HhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHH
Q 008022          281 CSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAH  360 (581)
Q Consensus       281 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  360 (581)
                      .+.|.++.|..-|+.+....  |+..+   ...++.+.--.++-                ......+..+...|+...|+
T Consensus       117 lK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~~ai  175 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQNAI  175 (504)
T ss_pred             hhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchhhHH
Confidence            56666666666666666543  11110   00011100000000                01122233445567777777


Q ss_pred             HHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 008022          361 SLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCG  440 (581)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  440 (581)
                      .....+.+.. +.+...+..-..+|...|++..|+.-++...+.. ..+....--+...+...|+.+.++...++.++. 
T Consensus       176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-  252 (504)
T KOG0624|consen  176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-  252 (504)
T ss_pred             HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-
Confidence            7777776653 5666777777777777777777777766665543 334555555666667777777777777777764 


Q ss_pred             CcccHH-HH---HH---HH------HHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHH
Q 008022          441 IQLNIV-TY---NT---IL------HGVCRAGMVVEAFQLLGKMLIEGTKLDA---ITFNIIIYAYCKQGKVNNAIQLLD  504 (581)
Q Consensus       441 ~~~~~~-~~---~~---l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~  504 (581)
                       .||.. +|   ..   +.      ......+++.++.+..+..++..+....   ..+..+-.++...|++.+|++...
T Consensus       253 -dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~  331 (504)
T KOG0624|consen  253 -DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK  331 (504)
T ss_pred             -CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence             34322 11   11   11      1223456777777777777765433122   223444556667778888888888


Q ss_pred             HHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          505 RIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       505 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      ++.+   +.| |+.++..-..+|.-..++++|+.-|+++.+.
T Consensus       332 evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  332 EVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            8877   566 4667777777888888888888888877764

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.19  E-value=1.8e-07  Score=87.52  Aligned_cols=199  Identities=12%  Similarity=0.016  Sum_probs=97.0

Q ss_pred             HHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCC-CCh--hhHHHHHHHHH
Q 008022          345 CMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECL-PNI--TTYNELLDGLL  421 (581)
Q Consensus       345 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~  421 (581)
                      .+...+...|++++|...+++..... |.+...+..+...+...|++++|...+++....... |+.  ..|..+...+.
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~  197 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL  197 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence            34445556666666666666666553 444555555666666666666666666665543211 111  12334555666


Q ss_pred             hcCCHHHHHHHHHHHHHcCC-cccHHHH-H--HHHHHHHhcCCHHHHHHH---HHHHHHCCC-CcCHHHHHHHHHHHHhc
Q 008022          422 RVNRVKEAFELVTEIEKCGI-QLNIVTY-N--TILHGVCRAGMVVEAFQL---LGKMLIEGT-KLDAITFNIIIYAYCKQ  493 (581)
Q Consensus       422 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~a~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~~  493 (581)
                      ..|++++|..++++...... .+..... +  .++..+...|....+.+.   ......... ..........+.++...
T Consensus       198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  277 (355)
T cd05804         198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA  277 (355)
T ss_pred             HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence            66677777666666543211 1111111 1  122222233322222222   111111100 11111222455666777


Q ss_pred             CCHHHHHHHHHHHhcCCCC------CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          494 GKVNNAIQLLDRIRGGGEW------NP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       494 g~~~~A~~~~~~~~~~~~~------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      |+.++|..+++.+.....-      .. ..........++...|++++|.+.+...+.
T Consensus       278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~  335 (355)
T cd05804         278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD  335 (355)
T ss_pred             CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7777777777776541111      00 122333444456677888888888777764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.19  E-value=2.9e-07  Score=86.09  Aligned_cols=305  Identities=10%  Similarity=0.007  Sum_probs=181.4

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH---H
Q 008022          272 AYSTLIHGLCSNGSMDEAVSVSYQMEENSC-PPNVT-TYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTC---M  346 (581)
Q Consensus       272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l  346 (581)
                      .+..+...+...|+.+.+.+.+........ .++.. ........+...|++++|...+++..+..+. +...+..   .
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~~   86 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLGA   86 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHHH
Confidence            355555556666667766555555443321 12221 1222233456678888888888887776322 3333331   1


Q ss_pred             HHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 008022          347 VKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRV  426 (581)
Q Consensus       347 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  426 (581)
                      .......+....+...+.... ...+........+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus        87 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~  164 (355)
T cd05804          87 FGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF  164 (355)
T ss_pred             HHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence            111122344555555554421 1223334455566678889999999999999998876 44566778888899999999


Q ss_pred             HHHHHHHHHHHHcCC-cccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHH-H--HHHHHHHhcCCHHHH
Q 008022          427 KEAFELVTEIEKCGI-QLNI--VTYNTILHGVCRAGMVVEAFQLLGKMLIEGT-KLDAITF-N--IIIYAYCKQGKVNNA  499 (581)
Q Consensus       427 ~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~~~~A  499 (581)
                      ++|...+++...... .++.  ..|..+...+...|++++|..++++...... .+..... +  .++..+...|....+
T Consensus       165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  244 (355)
T cd05804         165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG  244 (355)
T ss_pred             HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence            999999999887532 1232  3455678889999999999999999865432 1222211 1  223334445543333


Q ss_pred             HHH--H-HHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-------C-CHHhHHHHHHHHHhccCCC
Q 008022          500 IQL--L-DRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGIC-------P-NFATWNVLVRSLFSNLGHL  568 (581)
Q Consensus       500 ~~~--~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~-~~~~~~~l~~~~~~~g~~~  568 (581)
                      .++  + .....................++...|+.++|...++.+......       . .....-....++...|+.+
T Consensus       245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~  324 (355)
T cd05804         245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA  324 (355)
T ss_pred             HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence            333  2 221111000111222235777888999999999999998653211       0 1122222333567889999


Q ss_pred             ChHHHHHHHhh
Q 008022          569 GPVYILDDIMA  579 (581)
Q Consensus       569 ~a~~~~~~~~~  579 (581)
                      +|.+.+...+.
T Consensus       325 ~A~~~L~~al~  335 (355)
T cd05804         325 TALELLGPVRD  335 (355)
T ss_pred             HHHHHHHHHHH
Confidence            99999988765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.16  E-value=9.6e-06  Score=86.26  Aligned_cols=416  Identities=14%  Similarity=-0.031  Sum_probs=232.6

Q ss_pred             hHHHHHHHHHhhCCCC--C-C----cchHHHHHHHHHcc----CCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHH
Q 008022          117 DGAYKLLVEMGNKGCA--P-D----AVSYTTIVSSICKL----GQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAF  185 (581)
Q Consensus       117 ~~a~~~~~~~~~~~~~--~-~----~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  185 (581)
                      +.+.++++++...|+-  + +    ...+..++.-+.+.    ...++...+          .......+...|++.+|.
T Consensus       292 ~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~l----------h~raa~~~~~~g~~~~Al  361 (903)
T PRK04841        292 ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPEL----------HRAAAEAWLAQGFPSEAI  361 (903)
T ss_pred             CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHH----------HHHHHHHHHHCCCHHHHH
Confidence            3456677777766641  1 1    23345555444332    223333333          233445566677777666


Q ss_pred             HHHHHHHHCCCCCC-cccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 008022          186 WLLCEMVDRGIDPN-VITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIRE  264 (581)
Q Consensus       186 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  264 (581)
                      ..+......   +. ..............|+++.+..++..+.......+..........+...|+++++...+......
T Consensus       362 ~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~  438 (903)
T PRK04841        362 HHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQE  438 (903)
T ss_pred             HHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            544332111   00 00111122334456777777666665422111122333334445556778888888888776543


Q ss_pred             CC------CCCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH----HhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          265 GF------LPNV--VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNV----TTYSALIDGFAKAGNLLGASQIWNRMI  332 (581)
Q Consensus       265 ~~------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~  332 (581)
                      -.      .+..  .....+...+...|++++|...++.........+.    .....+...+...|+++.|...+.+..
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al  518 (903)
T PRK04841        439 LKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTE  518 (903)
T ss_pred             ccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            10      1111  11222334456788899998888887653111121    233455566777899999988888775


Q ss_pred             hCCC---CC--ChhhHHHHHHHHHccCChhHHHHHHHHHhhC----CCCC---ChhhHHHHHHHhhcCCChHHHHHHHHH
Q 008022          333 SNGC---SP--NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE----NCPP---NTVTFNTFIKGLCGCGRVDWAMKLLDQ  400 (581)
Q Consensus       333 ~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~  400 (581)
                      ....   .+  .......+...+...|+++.|...+++....    +...   ....+..+...+...|++++|...+..
T Consensus       519 ~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~  598 (903)
T PRK04841        519 QMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK  598 (903)
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4311   11  1223445566778889999998888775442    2111   122344455566777999999888887


Q ss_pred             HhhCC--CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CcccHH--HH--HHHHHHHHhcCCHHHHHHHHHH
Q 008022          401 MKQYE--CLP--NITTYNELLDGLLRVNRVKEAFELVTEIEKCG--IQLNIV--TY--NTILHGVCRAGMVVEAFQLLGK  470 (581)
Q Consensus       401 ~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~~~~~~a~~~~~~  470 (581)
                      .....  ..+  ....+..+...+...|++++|.+.+.......  ......  ..  ...+..+...|+.+.|.+.+..
T Consensus       599 al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~  678 (903)
T PRK04841        599 GLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQ  678 (903)
T ss_pred             hHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            64421  111  12334445667778899999988888775421  111110  00  1112334557888888888777


Q ss_pred             HHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022          471 MLIEGTKLD---AITFNIIIYAYCKQGKVNNAIQLLDRIRGG---GEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       471 ~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                      .........   ...+..+..++...|++++|...++++...   .+..+ ...+...+..++...|+.++|...+.+++
T Consensus       679 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al  758 (903)
T PRK04841        679 APKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEAL  758 (903)
T ss_pred             cCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            554211111   112345677888889999999988887652   12222 23456677788889999999999999887


Q ss_pred             Hc
Q 008022          544 NE  545 (581)
Q Consensus       544 ~~  545 (581)
                      +.
T Consensus       759 ~l  760 (903)
T PRK04841        759 KL  760 (903)
T ss_pred             HH
Confidence            64

>PF13041 PPR_2: PPR repeat family

Probab=99.16  E-value=1.1e-10  Score=72.08  Aligned_cols=49  Identities=37%  Similarity=0.799  Sum_probs=28.5

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q 008022          408 PNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVC  456 (581)
Q Consensus       408 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  456 (581)
                      ||..+|+.++.+|++.|++++|.++|++|.+.|++||..+|+.++++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.15  E-value=6.8e-09  Score=91.16  Aligned_cols=148  Identities=17%  Similarity=0.148  Sum_probs=64.9

Q ss_pred             HhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh----cC
Q 008022          384 GLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR----AG  459 (581)
Q Consensus       384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~  459 (581)
                      .+...|++++|++++...      .+.......+..+.+.++++.|.+.++.|.+.  ..|. +...+..++..    .+
T Consensus       111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGE  181 (290)
T ss_dssp             HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTT
T ss_pred             HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCch
Confidence            344445555555444321      23334444445555555555555555555442  2222 22222222221    12


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCH-HHHHH
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGM-QEAFI  537 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~-~~A~~  537 (581)
                      .+.+|..+|+++... .++++.+++.++.+....|++++|.+++.++..   ..| ++.++..++.+....|+. +.+.+
T Consensus       182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---~~~~~~d~LaNliv~~~~~gk~~~~~~~  257 (290)
T PF04733_consen  182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---KDPNDPDTLANLIVCSLHLGKPTEAAER  257 (290)
T ss_dssp             CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---C-CCHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hccCCHHHHHHHHHHHHHhCCChhHHHH
Confidence            355555555554433 234555555555555555555555555555544   223 344444455444444444 44444


Q ss_pred             HHHHHHH
Q 008022          538 YLQKMLN  544 (581)
Q Consensus       538 ~~~~~~~  544 (581)
                      ++.++..
T Consensus       258 ~l~qL~~  264 (290)
T PF04733_consen  258 YLSQLKQ  264 (290)
T ss_dssp             HHHHCHH
T ss_pred             HHHHHHH
Confidence            5555544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.15  E-value=5.9e-07  Score=76.48  Aligned_cols=313  Identities=12%  Similarity=0.102  Sum_probs=185.1

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHH---HHHHccCChhHHHHHHHHHHHcCCCCCccc-HH
Q 008022          164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTII---SSLCDVGNVETSLGILGQMFVRGCNPNIHS-FT  239 (581)
Q Consensus       164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~  239 (581)
                      ++.-...+...+...|++..|+.-|....+.    |+..|..+.   ..|...|+...|+.=+..+++.  +||-.. -.
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi  110 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI  110 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence            3444566788889999999999999888775    555665554   5778889999999999998887  677332 22


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 008022          240 SLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAG  319 (581)
Q Consensus       240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  319 (581)
                      .-...+.+.|.+++|..-|+.+++..  |+..+-   ..++.+.--.++-+                .....+..+...|
T Consensus       111 QRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~~G  169 (504)
T KOG0624|consen  111 QRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASGSG  169 (504)
T ss_pred             HhchhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhcCC
Confidence            33456789999999999999999874  322111   11111111111111                1111222333445


Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHH
Q 008022          320 NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLD  399 (581)
Q Consensus       320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  399 (581)
                      +...|+.....+.+..+ .|...+..-..+|...|++..|+.-++...+.. ..+...+-.+-..+...|+.+.++...+
T Consensus       170 D~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iR  247 (504)
T KOG0624|consen  170 DCQNAIEMITHLLEIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIR  247 (504)
T ss_pred             chhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            55555555555554422 244445555555555555555555555444332 2344444444455555555555555555


Q ss_pred             HHhhCCCCCChh----hHHH---H------HHHHHhcCCHHHHHHHHHHHHHcCCcccHH---HHHHHHHHHHhcCCHHH
Q 008022          400 QMKQYECLPNIT----TYNE---L------LDGLLRVNRVKEAFELVTEIEKCGIQLNIV---TYNTILHGVCRAGMVVE  463 (581)
Q Consensus       400 ~~~~~~~~~~~~----~~~~---l------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~  463 (581)
                      +..+.+  ||..    .|..   +      +......+++.++++..+...+........   .+..+-.++...|++.+
T Consensus       248 ECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e  325 (504)
T KOG0624|consen  248 ECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE  325 (504)
T ss_pred             HHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH
Confidence            555433  3321    1111   1      122334566777777777776653221222   23344455666778888


Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          464 AFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       464 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      |++...+.+... +.|..++..-+.+|.-...|+.|+.-|+++.+
T Consensus       326 AiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  326 AIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             HHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            888888887753 33577787788888888888888888888887

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.14  E-value=3.3e-06  Score=76.67  Aligned_cols=174  Identities=10%  Similarity=0.019  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc-cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008022          391 VDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQL-NIVTYNTILHGVCRAGMVVEAFQLLG  469 (581)
Q Consensus       391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~  469 (581)
                      .+.....++++.......-..+|..++....+..-+..|..+|.++.+.+..+ +...+++++..+| .++.+.|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            44444555555433222223355566666666666667777777776665444 4555555555443 356666777776


Q ss_pred             HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 008022          470 KMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGI  547 (581)
Q Consensus       470 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  547 (581)
                      --++.- ..++.--...+.-+...++-..+..+|+++... .+.|  ....|..++.--..-|+...++++-+++... +
T Consensus       426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a-f  502 (656)
T KOG1914|consen  426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA-F  502 (656)
T ss_pred             HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-c
Confidence            666542 233444455556666666666777777776663 3444  2456666666666667777776666666442 2


Q ss_pred             C----CCHHhHHHHHHHHHhccCCC
Q 008022          548 C----PNFATWNVLVRSLFSNLGHL  568 (581)
Q Consensus       548 ~----~~~~~~~~l~~~~~~~g~~~  568 (581)
                      +    +....-..+++.|--.+...
T Consensus       503 ~~~qe~~~~~~~~~v~RY~~~d~~~  527 (656)
T KOG1914|consen  503 PADQEYEGNETALFVDRYGILDLYP  527 (656)
T ss_pred             chhhcCCCChHHHHHHHHhhccccc
Confidence            2    22233444444444444443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.14  E-value=7.3e-09  Score=90.98  Aligned_cols=256  Identities=16%  Similarity=0.166  Sum_probs=170.8

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCH
Q 008022          242 LKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNL  321 (581)
Q Consensus       242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  321 (581)
                      ++-+.-.|++..++.-.+ ........+......+.+++...|+.+.++   .++.+.. +|.......+...+...++-
T Consensus         8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~   82 (290)
T PF04733_consen    8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK   82 (290)
T ss_dssp             HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred             HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence            455667899999987666 333322223445566778899999877544   4444433 55555555555444433455


Q ss_pred             HHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHH
Q 008022          322 LGASQIWNRMISNGCSP-NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQ  400 (581)
Q Consensus       322 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  400 (581)
                      +.+..-++........+ +..........+...|++++|++++...      .+.......+..+.+.++++.|.+.++.
T Consensus        83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~  156 (290)
T PF04733_consen   83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN  156 (290)
T ss_dssp             HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55555555444333222 2333333345677789999999888653      4567777888999999999999999999


Q ss_pred             HhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008022          401 MKQYECLPNITTYNELLDGLLR----VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT  476 (581)
Q Consensus       401 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  476 (581)
                      |.+.+  .| .+...+..++..    .+.+.+|..+|+++.+. .++++.+.+.+..+....|++++|.+++.+.+..+ 
T Consensus       157 ~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-  231 (290)
T PF04733_consen  157 MQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-  231 (290)
T ss_dssp             HHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred             HHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence            98754  33 444445554433    34699999999998765 57889999999999999999999999999998765 


Q ss_pred             CcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhcCCCCCCCH
Q 008022          477 KLDAITFNIIIYAYCKQGKV-NNAIQLLDRIRGGGEWNPDI  516 (581)
Q Consensus       477 ~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~p~~  516 (581)
                      +.++.++..++.+....|+. +.+.+.+.++..   ..|+.
T Consensus       232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~---~~p~h  269 (290)
T PF04733_consen  232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ---SNPNH  269 (290)
T ss_dssp             CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH---HTTTS
T ss_pred             cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH---hCCCC
Confidence            45778888888888888888 678889898887   34653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13041 PPR_2: PPR repeat family

Probab=99.14  E-value=1.2e-10  Score=71.92  Aligned_cols=49  Identities=37%  Similarity=0.830  Sum_probs=31.9

Q ss_pred             CChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHH
Q 008022           98 PNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSIC  146 (581)
Q Consensus        98 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  146 (581)
                      ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            5566666666666666666666666666666666666666666666654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.13  E-value=1e-05  Score=86.02  Aligned_cols=368  Identities=14%  Similarity=-0.019  Sum_probs=221.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHhCCCcchH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChh
Q 008022          141 IVSSICKLGQVEEARELAMRFGSGVSVY---NALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVE  217 (581)
Q Consensus       141 l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  217 (581)
                      ....+...|++.+|.......+......   ..........|+++.+..++..+.......++.........+...|+++
T Consensus       347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~  426 (903)
T PRK04841        347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS  426 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence            3444556677776666555553332222   2223345567777777777665522111123333334455566788999


Q ss_pred             HHHHHHHHHHHcCCC------CC--cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCC
Q 008022          218 TSLGILGQMFVRGCN------PN--IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNV----VAYSTLIHGLCSNGS  285 (581)
Q Consensus       218 ~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~  285 (581)
                      ++..++......-..      +.  ......+...+...|++++|...++.........+.    ...+.+...+...|+
T Consensus       427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~  506 (903)
T PRK04841        427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE  506 (903)
T ss_pred             HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence            998888876543111      11  111122334556789999999999887763211121    234555666778899


Q ss_pred             hhhHHHHHHHHHhCCC---CC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHcc
Q 008022          286 MDEAVSVSYQMEENSC---PP--NVTTYSALIDGFAKAGNLLGASQIWNRMISN----GCS--P-NVVAYTCMVKVLCQN  353 (581)
Q Consensus       286 ~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~  353 (581)
                      +++|...+.+......   .+  .......+...+...|+++.|...+++....    +..  + ....+..+...+...
T Consensus       507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  586 (903)
T PRK04841        507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW  586 (903)
T ss_pred             HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence            9999988888764211   11  1234455667788899999999988876542    211  1 122344455667778


Q ss_pred             CChhHHHHHHHHHhhCC--CCC--ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCC-ChhhH-----HHHHHHHHhc
Q 008022          354 NMFHQAHSLIEKMAFEN--CPP--NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLP-NITTY-----NELLDGLLRV  423 (581)
Q Consensus       354 ~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~  423 (581)
                      |++++|...+.+.....  ..+  ....+..+...+...|+++.|...+.......... ....+     ...+..+...
T Consensus       587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (903)
T PRK04841        587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT  666 (903)
T ss_pred             cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence            99999998888765421  111  23334445667778899999999888874421011 11111     1122344557


Q ss_pred             CCHHHHHHHHHHHHHcCCcccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCC
Q 008022          424 NRVKEAFELVTEIEKCGIQLNI---VTYNTILHGVCRAGMVVEAFQLLGKMLIE----GTKL-DAITFNIIIYAYCKQGK  495 (581)
Q Consensus       424 ~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~  495 (581)
                      |+.+.|..++............   ..+..+..++...|++++|...+++....    +... ...+...++.++...|+
T Consensus       667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~  746 (903)
T PRK04841        667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR  746 (903)
T ss_pred             CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence            8889988887765542111111   11345666778889999999999888754    2222 22356677788899999


Q ss_pred             HHHHHHHHHHHhc
Q 008022          496 VNNAIQLLDRIRG  508 (581)
Q Consensus       496 ~~~A~~~~~~~~~  508 (581)
                      .++|...+.++.+
T Consensus       747 ~~~A~~~L~~Al~  759 (903)
T PRK04841        747 KSEAQRVLLEALK  759 (903)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999876

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.08  E-value=5.1e-09  Score=95.14  Aligned_cols=219  Identities=17%  Similarity=0.146  Sum_probs=120.0

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHH
Q 008022          315 FAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWA  394 (581)
Q Consensus       315 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  394 (581)
                      +.+.|++.+|.-.|+..+...+. +...|..|.......++-..|+..+++..+.. |.+......|.-.|...|.-..|
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence            34566666666666666665332 45566666666666666666666666666554 45555666666666666666666


Q ss_pred             HHHHHHHhhCCCCCChhhHHHHHHH-----------HHhcCCHHHHHHHHHHHH-HcCCcccHHHHHHHHHHHHhcCCHH
Q 008022          395 MKLLDQMKQYECLPNITTYNELLDG-----------LLRVNRVKEAFELVTEIE-KCGIQLNIVTYNTILHGVCRAGMVV  462 (581)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~  462 (581)
                      .+.++.-....++     |..+...           +.....+....++|-++. ..+..+|+.....|.-.|.-.|+++
T Consensus       373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd  447 (579)
T KOG1125|consen  373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD  447 (579)
T ss_pred             HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence            6666665543311     1111100           001111223333333333 2222355555556665666666666


Q ss_pred             HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHH
Q 008022          463 EAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQK  541 (581)
Q Consensus       463 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~  541 (581)
                      +|..+|+.++... +.|..+||.|+..++...+.++|+..|.++.+   +.|. +.+.-.|+.+|...|.+++|.+.|-.
T Consensus       448 raiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  448 RAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE  523 (579)
T ss_pred             HHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence            6666666666543 33555666666666666666666666666666   5564 33455566666666666666666655


Q ss_pred             HHH
Q 008022          542 MLN  544 (581)
Q Consensus       542 ~~~  544 (581)
                      ++.
T Consensus       524 AL~  526 (579)
T KOG1125|consen  524 ALS  526 (579)
T ss_pred             HHH
Confidence            543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.06  E-value=2.6e-08  Score=90.65  Aligned_cols=218  Identities=11%  Similarity=0.054  Sum_probs=158.9

Q ss_pred             HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022            4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM   83 (581)
Q Consensus         4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (581)
                      .+.+.|++..|.-.|+..++.++. +.++|..|......+++-..|+..+++..+..+ .+..+...+...|...|.-..
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence            467889999999999999988765 889999999999999999999999999998765 677788888888888898889


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHH---------HHHHhcCChhHHHHHHHHHhh-CCCCCCcchHHHHHHHHHccCCHHH
Q 008022           84 INPIYSNMKRDGMEPNVFTYNILL---------KALCKNNRVDGAYKLLVEMGN-KGCAPDAVSYTTIVSSICKLGQVEE  153 (581)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~  153 (581)
                      |++++.......+ +-.  |....         ..+.....+....++|-++.. .+..+|+.+...|.-.|.-.|++++
T Consensus       372 Al~~L~~Wi~~~p-~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  372 ALKMLDKWIRNKP-KYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHhCc-cch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            9999988876531 110  00000         111122223344555555443 3434677777888888888888888


Q ss_pred             HHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHHccCChhHHHHHHHHHHH
Q 008022          154 ARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPN-VITYSTIISSLCDVGNVETSLGILGQMFV  228 (581)
Q Consensus       154 a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  228 (581)
                      |...|+..    |.|...||.|...+....+.++|+..|.+.++.  .|+ ++....|.-.|...|.+++|.+.|-..+.
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            88888877    777888888888888888888888888888776  333 44445566667788888888777766543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.02  E-value=6.9e-08  Score=90.44  Aligned_cols=219  Identities=16%  Similarity=0.096  Sum_probs=159.4

Q ss_pred             CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 008022          338 PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELL  417 (581)
Q Consensus       338 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  417 (581)
                      |-...-..+...+...|-...|..++++..         .|..++.+|...|+..+|..+..+..+.  +|+...|..+.
T Consensus       396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG  464 (777)
T KOG1128|consen  396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG  464 (777)
T ss_pred             CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence            333344556677777888888888887653         4667778888888888888888777663  57777887777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 008022          418 DGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVN  497 (581)
Q Consensus       418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  497 (581)
                      .......-+++|.++.+.....       .-..+.....+.++++++.+.++...+.+ +....+|..++.+..+.++++
T Consensus       465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q  536 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ  536 (777)
T ss_pred             hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence            7777766777777777665432       11112222334678888888888887764 556778888888888888888


Q ss_pred             HHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHH
Q 008022          498 NAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDD  576 (581)
Q Consensus       498 ~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  576 (581)
                      .|.+.|.....   +.| +...|+++..+|.+.|+-.+|...++++.+.. ..+..+|.........-|.+++|++.+.+
T Consensus       537 ~av~aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r  612 (777)
T KOG1128|consen  537 AAVKAFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR  612 (777)
T ss_pred             HHHHHHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence            88888888887   567 56688888888888888888888888888775 44555666666677778888888888887


Q ss_pred             Hhh
Q 008022          577 IMA  579 (581)
Q Consensus       577 ~~~  579 (581)
                      +++
T Consensus       613 ll~  615 (777)
T KOG1128|consen  613 LLD  615 (777)
T ss_pred             HHH
Confidence            765

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.97  E-value=2.7e-05  Score=70.99  Aligned_cols=210  Identities=11%  Similarity=0.012  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc---cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHH
Q 008022          321 LLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ---NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKL  397 (581)
Q Consensus       321 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  397 (581)
                      .+++..++++.+..-...+..+|..+...--.   .+..+.....++++.......-..+|...+..-.+..-+..|..+
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i  388 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI  388 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence            45666667666554222233344433322111   123566666777766543334456778888888888889999999


Q ss_pred             HHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008022          398 LDQMKQYECLP-NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT  476 (581)
Q Consensus       398 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  476 (581)
                      |.+..+.+..+ .+...++++..++ .++.+-|.++|+--.+. ...++.--...++.+...|+-..+..+|++.+..++
T Consensus       389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l  466 (656)
T KOG1914|consen  389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL  466 (656)
T ss_pred             HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence            99998877666 6667777887766 47789999999987665 344455556677888889999999999999998855


Q ss_pred             Cc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCCHHhHHHHHHHHHccCCH
Q 008022          477 KL--DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE--WNPDIISYTSLLWGICNSGGM  532 (581)
Q Consensus       477 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~  532 (581)
                      ++  ...+|..++.--+.-|+...+.++-++....+.  ..|....-..++.-|.-.+.+
T Consensus       467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~  526 (656)
T KOG1914|consen  467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY  526 (656)
T ss_pred             ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence            54  456899999988999999999999888776443  332222223344445444443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.93  E-value=5.3e-07  Score=90.67  Aligned_cols=213  Identities=15%  Similarity=0.070  Sum_probs=153.9

Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCC---CHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 008022           16 YLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIRE-FGLKP---TVKIYNHILDALLAENRFSMINPIYSNM   91 (581)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~   91 (581)
                      +-|++++... |.+...|...+......++.+.|++++++++. .++.-   -..+|.++++.-..-|.-+...++|+++
T Consensus      1445 eDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred             HHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence            3344444443 34777888889999999999999999998885 33332   2347778888777778888888999998


Q ss_pred             HhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CC--Cc
Q 008022           92 KRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GS--GV  165 (581)
Q Consensus        92 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~--~~  165 (581)
                      .+..  ..-.+|..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+.++-+.|.+++.+.    |.  ..
T Consensus      1524 cqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1524 CQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred             HHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence            8763  22346788889999999999999999999876 2246677888888888888888888887776    33  34


Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCC
Q 008022          166 SVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNP  233 (581)
Q Consensus       166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  233 (581)
                      ......+..-.+.|+.+.+..+|+...... +-....|+..++.-.+.|+.+.+..+|+++...++.|
T Consensus      1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            445555566667777777777777776652 2255667777777777777777777777777665544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.93  E-value=1.2e-06  Score=88.38  Aligned_cols=243  Identities=12%  Similarity=0.022  Sum_probs=183.9

Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhC-CCC---CChhhHHHHHHHhhcCCChHHHHHHH
Q 008022          323 GASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE-NCP---PNTVTFNTFIKGLCGCGRVDWAMKLL  398 (581)
Q Consensus       323 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~  398 (581)
                      .|.++-+.++..  +.+...|...|....+.++.++|.++.++.... ++.   .-...|.++++.-..-|.-+...++|
T Consensus      1443 saeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred             CHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence            344444444433  234567888888889999999999999998754 111   12356777777777778888999999


Q ss_pred             HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 008022          399 DQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK-  477 (581)
Q Consensus       399 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-  477 (581)
                      +++.+..  .....|..|...|.+.+.+++|.++++.|.+. .......|..++..+.+.++-+.|..++.+++..-++ 
T Consensus      1521 eRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1521 ERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred             HHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence            9998854  33456788899999999999999999999876 3467889999999999999999999999999986211 


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HhHH
Q 008022          478 LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF--ATWN  555 (581)
Q Consensus       478 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~  555 (581)
                      .........+..-.+.||.+.+..+|+.....++  .....|+.+++.-.++|+.+.++.+|++++..++.|-.  ..|.
T Consensus      1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP--KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP--KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred             hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc--cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence            2455666777788899999999999999887442  25668999999999999999999999999998887753  3455


Q ss_pred             HHHHHHHhccCCCChHHH
Q 008022          556 VLVRSLFSNLGHLGPVYI  573 (581)
Q Consensus       556 ~l~~~~~~~g~~~~a~~~  573 (581)
                      ..+..-..-|+ ++++++
T Consensus      1676 kwLeyEk~~Gd-e~~vE~ 1692 (1710)
T KOG1070|consen 1676 KWLEYEKSHGD-EKNVEY 1692 (1710)
T ss_pred             HHHHHHHhcCc-hhhHHH
Confidence            55543333344 333333

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.93  E-value=7e-05  Score=72.72  Aligned_cols=218  Identities=14%  Similarity=0.106  Sum_probs=98.2

Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHH
Q 008022           42 RVGLAEQALKMFYRIREFGLKPTVKIYNHILDA--LLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGA  119 (581)
Q Consensus        42 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  119 (581)
                      ..+++..|++-...+.+..  |+. .|..++.+  ..+.|+.++|..+++.....+ ..|..+...+-.+|.+.++.++|
T Consensus        21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHH
Confidence            3445555555555555432  221 12222222  234555555555555554443 22445555555555555555555


Q ss_pred             HHHHHHHhhCCCCCCcchHHHHHHHHHccCCHH----HHHHHHHHhCCCcchHHHHHHHHHhcCC----------hhHHH
Q 008022          120 YKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVE----EARELAMRFGSGVSVYNALINGLCKEHK----------IEEAF  185 (581)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~  185 (581)
                      ..+|+.....  .|+......+..+|.+.+.+.    .|+++++.+|.+...+=++++.....-.          ..-|.
T Consensus        97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~  174 (932)
T KOG2053|consen   97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAE  174 (932)
T ss_pred             HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence            5555555544  334444444445555544432    3344444444444443333333322111          11233


Q ss_pred             HHHHHHHHCC-CCCCcccHHHHHHHHHccCChhHHHHHH-HHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008022          186 WLLCEMVDRG-IDPNVITYSTIISSLCDVGNVETSLGIL-GQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIR  263 (581)
Q Consensus       186 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  263 (581)
                      ..++.+.+.+ .--+..-...-...+...|.+++|..++ ....+.-..-+...-+.-+..+...+++.+..++-.++..
T Consensus       175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            3444444332 1101111112223344566677777766 2333322222233333445556666777777666666666


Q ss_pred             CC
Q 008022          264 EG  265 (581)
Q Consensus       264 ~~  265 (581)
                      .+
T Consensus       255 k~  256 (932)
T KOG2053|consen  255 KG  256 (932)
T ss_pred             hC
Confidence            64

>PLN02789 farnesyltranstransferase

Probab=98.92  E-value=1.4e-06  Score=77.89  Aligned_cols=203  Identities=11%  Similarity=0.047  Sum_probs=101.4

Q ss_pred             cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCC-ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH--HHH
Q 008022          353 NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCG-RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRV--KEA  429 (581)
Q Consensus       353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a  429 (581)
                      .+..++|+.+..+++..+ |.+..+|.....++...| ++++++..++.+.+.+ +.+..+|+.....+.+.|+.  +++
T Consensus        50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e  127 (320)
T PLN02789         50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE  127 (320)
T ss_pred             CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence            344555555555555443 333344444434444444 3455666665555543 22333444443334444432  455


Q ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCH----HHHHHH
Q 008022          430 FELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ---GKV----NNAIQL  502 (581)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~  502 (581)
                      +.+++.+.+.. +-+..+|......+...|+++++++.++++++.+ +.+..+|+....++.+.   |..    ++++++
T Consensus       128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y  205 (320)
T PLN02789        128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY  205 (320)
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence            55665655543 3455556555555666666666666666666654 33455555555444433   212    345555


Q ss_pred             HHHHhcCCCCCC-CHHhHHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 008022          503 LDRIRGGGEWNP-DIISYTSLLWGICNS----GGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFS  563 (581)
Q Consensus       503 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  563 (581)
                      ..+++.   ..| +...|+.+...+...    +...+|.+.+.+..+.+ ..+...+..++..+..
T Consensus       206 ~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        206 TIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence            555555   344 455566666555552    23345666666655421 2234445555555554

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.91  E-value=3.9e-07  Score=74.94  Aligned_cols=165  Identities=15%  Similarity=0.057  Sum_probs=116.6

Q ss_pred             CCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHH
Q 008022          372 PPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTI  451 (581)
Q Consensus       372 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  451 (581)
                      |.+..+ ..+...+...|+-+....+........ +.+.......+....+.|++.+|...+++..... ++|...|+.+
T Consensus        64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l  140 (257)
T COG5010          64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL  140 (257)
T ss_pred             cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence            334444 556666777777777777766654322 3344455557777778888888888888877653 6777888888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccC
Q 008022          452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSG  530 (581)
Q Consensus       452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g  530 (581)
                      ..+|.+.|+++.|..-|.+..+.. .-++...+.++..|.-.|+++.|..++.....   ..+ |...-..+..+....|
T Consensus       141 gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l---~~~ad~~v~~NLAl~~~~~g  216 (257)
T COG5010         141 GAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYL---SPAADSRVRQNLALVVGLQG  216 (257)
T ss_pred             HHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh---CCCCchHHHHHHHHHHhhcC
Confidence            888888888888888888887763 33566677777777778888888888888776   223 6666677777778888


Q ss_pred             CHHHHHHHHHHHH
Q 008022          531 GMQEAFIYLQKML  543 (581)
Q Consensus       531 ~~~~A~~~~~~~~  543 (581)
                      ++++|..+...-.
T Consensus       217 ~~~~A~~i~~~e~  229 (257)
T COG5010         217 DFREAEDIAVQEL  229 (257)
T ss_pred             ChHHHHhhccccc
Confidence            8888877765554

>PLN02789 farnesyltranstransferase

Probab=98.89  E-value=1.7e-06  Score=77.24  Aligned_cols=204  Identities=9%  Similarity=0.001  Sum_probs=127.9

Q ss_pred             HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc-
Q 008022            4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVG-LAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRF-   81 (581)
Q Consensus         4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-   81 (581)
                      ++...++.++|+.+...+++.++. +..+|......+...| ++++++..++.+...++ .+..+|+...-.+.+.|+. 
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~  123 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDA  123 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchh
Confidence            344567778888888888876544 5566666666666666 56888888888887655 4555666555445555543 


Q ss_pred             -chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHcc---CCH----HH
Q 008022           82 -SMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKL---GQV----EE  153 (581)
Q Consensus        82 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~  153 (581)
                       +.++.+++.+.+.+ +.+..+|+....++...|+++++++.++++++.+.. +..+|+.....+.+.   |..    ++
T Consensus       124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~  201 (320)
T PLN02789        124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS  201 (320)
T ss_pred             hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence             56777777777765 567778888777777888888888888888877544 556666555544443   222    33


Q ss_pred             HHHHHHHh----CCCcchHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHc
Q 008022          154 ARELAMRF----GSGVSVYNALINGLCKE----HKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCD  212 (581)
Q Consensus       154 a~~~~~~~----~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  212 (581)
                      .++...+.    |.+..+|+-+...+...    ++..+|.+.+.+..+.++ .+...+..|+..|+.
T Consensus       202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~  267 (320)
T PLN02789        202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence            44444333    66777777766666652    233456666655544322 244455555555553

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.88  E-value=4.3e-07  Score=79.06  Aligned_cols=187  Identities=12%  Similarity=-0.035  Sum_probs=107.2

Q ss_pred             ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh--hhH
Q 008022          339 NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNT---VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI--TTY  413 (581)
Q Consensus       339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~  413 (581)
                      ....+..+...+...|++++|...++++.... |.++   ..+..+..++...|+++.|...++.+.+.......  ..+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            34455556666777777777777777766543 2222   34555666777777777777777777654311111  123


Q ss_pred             HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008022          414 NELLDGLLRV--------NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNI  485 (581)
Q Consensus       414 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  485 (581)
                      ..+..++...        |++++|.+.++.+.+.. +.+...+..+.... .   ....      .        ......
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~-~---~~~~------~--------~~~~~~  171 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMD-Y---LRNR------L--------AGKELY  171 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHH-H---HHHH------H--------HHHHHH
Confidence            3444444433        55666666666666542 22222221111110 0   0000      0        001124


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      ++..|.+.|++++|+..++++....+-.| ....+..++.++...|++++|..+++.+...
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            56677888888888888888877544334 3567778888888888888888888877653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.88  E-value=5e-07  Score=74.95  Aligned_cols=123  Identities=10%  Similarity=0.079  Sum_probs=89.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HhcCC--HHHH
Q 008022          423 VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY-CKQGK--VNNA  499 (581)
Q Consensus       423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A  499 (581)
                      .++.+++...++...+.. +.+...|..+...|...|++++|...+++..... +.+...+..++.++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            556677777777776654 6677778888888888888888888888888765 44677777777753 56666  4788


Q ss_pred             HHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 008022          500 IQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF  551 (581)
Q Consensus       500 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  551 (581)
                      .++++++.+   ..| +..++..++..+...|++++|+..|+++++. .+|+.
T Consensus       130 ~~~l~~al~---~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~  178 (198)
T PRK10370        130 REMIDKALA---LDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRV  178 (198)
T ss_pred             HHHHHHHHH---hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCc
Confidence            888888887   445 5667777888888888888888888888775 34443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.83  E-value=1.3e-06  Score=71.98  Aligned_cols=161  Identities=14%  Similarity=0.063  Sum_probs=113.8

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 008022          344 TCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRV  423 (581)
Q Consensus       344 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  423 (581)
                      ..+...+...|+-+....+........ +.+.......+....+.|++..|...+++..... ++|...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            555666777777777777766655432 4555666667777777788888888887776654 66777788888888888


Q ss_pred             CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 008022          424 NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLL  503 (581)
Q Consensus       424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  503 (581)
                      |++++|..-|.+..+.. +-++..++.+.-.+.-.|+++.|..++......+ .-|..+-..+.......|++++|.++.
T Consensus       148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            88888888777777752 4456666777777777788888888877777654 336666777777777788888877776


Q ss_pred             HHHhc
Q 008022          504 DRIRG  508 (581)
Q Consensus       504 ~~~~~  508 (581)
                      ..-..
T Consensus       226 ~~e~~  230 (257)
T COG5010         226 VQELL  230 (257)
T ss_pred             ccccc
Confidence            65443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.83  E-value=1.9e-07  Score=73.17  Aligned_cols=112  Identities=8%  Similarity=-0.082  Sum_probs=84.0

Q ss_pred             HHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 008022          431 ELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG  510 (581)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  510 (581)
                      .+++...+.  .|+  .+..+...+...|++++|...|+.++... +.+...+..++.++...|++++|+..|+++..  
T Consensus        14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--   86 (144)
T PRK15359         14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM--   86 (144)
T ss_pred             HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--
Confidence            345555543  333  34456677788888888888888888765 55777888888888888888888888888887  


Q ss_pred             CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022          511 EWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA  552 (581)
Q Consensus       511 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  552 (581)
                       +.| ++..+..++.++...|++++|...|+++++.  .|+..
T Consensus        87 -l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~  126 (144)
T PRK15359         87 -LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADA  126 (144)
T ss_pred             -cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCh
Confidence             456 6778888888888888888888888888773  45543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.83  E-value=6.6e-07  Score=84.11  Aligned_cols=233  Identities=15%  Similarity=0.111  Sum_probs=171.8

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 008022          273 YSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ  352 (581)
Q Consensus       273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  352 (581)
                      -..+...+...|-..+|..+++++.         .|..++.+|...|+..+|..+..+-.+.  +|++..|..+......
T Consensus       401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d  469 (777)
T KOG1128|consen  401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD  469 (777)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence            3456667778888888888887654         4667788888888888888888877773  6788888888887777


Q ss_pred             cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008022          353 NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFEL  432 (581)
Q Consensus       353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  432 (581)
                      ..-+++|.++.+.....       .-..+.....+.+++.++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.|.+.
T Consensus       470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence            77788888887765332       11222222334688889999888877655 34566787788888888999999999


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 008022          433 VTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW  512 (581)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  512 (581)
                      |....... +.+...||.+..+|.+.++..+|...+.+..+.+ ..+...|...+....+.|.+++|++.+.++......
T Consensus       542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~  619 (777)
T KOG1128|consen  542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK  619 (777)
T ss_pred             HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence            99888753 5567789999999999999999999999999887 556777888888888999999999999888652222


Q ss_pred             CCCHHhHHHHHHHH
Q 008022          513 NPDIISYTSLLWGI  526 (581)
Q Consensus       513 ~p~~~~~~~l~~~~  526 (581)
                      ..|......++...
T Consensus       620 ~~d~~vl~~iv~~~  633 (777)
T KOG1128|consen  620 YKDDEVLLIIVRTV  633 (777)
T ss_pred             cccchhhHHHHHHH
Confidence            22444444444433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.82  E-value=6.5e-07  Score=77.94  Aligned_cols=184  Identities=10%  Similarity=-0.050  Sum_probs=100.5

Q ss_pred             hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHH---HH
Q 008022          375 TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI---TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIV---TY  448 (581)
Q Consensus       375 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~  448 (581)
                      ...+..+...+...|+++.|...|+++..... .+.   ..+..+..++...|++++|...++.+.+.. +.+..   .+
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~  110 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAY  110 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHH
Confidence            44445555555666666666666666554331 111   234445555666666666666666665542 11111   23


Q ss_pred             HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHH
Q 008022          449 NTILHGVCRA--------GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYT  520 (581)
Q Consensus       449 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~  520 (581)
                      ..+..++...        |++++|.+.++++.... +.+...+..+.....    ....      .         .....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~---------~~~~~  170 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------L---------AGKEL  170 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------H---------HHHHH
Confidence            3333334332        44555555555555542 111111111111000    0000      0         00112


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCC-CC-CHHhHHHHHHHHHhccCCCChHHHHHHHhhc
Q 008022          521 SLLWGICNSGGMQEAFIYLQKMLNEGI-CP-NFATWNVLVRSLFSNLGHLGPVYILDDIMAN  580 (581)
Q Consensus       521 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  580 (581)
                      .++..+.+.|++++|+..++++++..- .| ....+..++.++...|++++|.+.++.+..+
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            566778899999999999999987521 12 2467788999999999999999998887643

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.78  E-value=5.9e-07  Score=74.52  Aligned_cols=116  Identities=11%  Similarity=0.054  Sum_probs=57.4

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCC--hhHH
Q 008022           43 VGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKAL-CKNNR--VDGA  119 (581)
Q Consensus        43 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a  119 (581)
                      .++.+++...++...+.++ .+...|..+...+...|+++.|...|++..+.. +.+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            3444555555555554433 445555555555555555555555555555543 33444444444432 34344  3555


Q ss_pred             HHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022          120 YKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF  161 (581)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  161 (581)
                      .+++++..+.+.. +..++..+...+...|++++|+..++++
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~a  170 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKV  170 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5555555554222 4444555555555555555555555554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.77  E-value=1e-06  Score=69.10  Aligned_cols=121  Identities=8%  Similarity=-0.103  Sum_probs=95.4

Q ss_pred             HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022          395 MKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE  474 (581)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  474 (581)
                      ..+++...+.+  |+.  +......+...|++++|...|+...... +.+...+..+..++.+.|++++|...|+++...
T Consensus        13 ~~~~~~al~~~--p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l   87 (144)
T PRK15359         13 EDILKQLLSVD--PET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML   87 (144)
T ss_pred             HHHHHHHHHcC--HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34566666543  443  4456777888999999999999998874 567888888999999999999999999999987


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHH
Q 008022          475 GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLW  524 (581)
Q Consensus       475 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~  524 (581)
                      + +.+...+..++.++...|++++|+..|+++..   +.| ++..+.....
T Consensus        88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~---~~p~~~~~~~~~~~  134 (144)
T PRK15359         88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK---MSYADASWSEIRQN  134 (144)
T ss_pred             C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHH
Confidence            5 56888899999999999999999999999988   556 4444444433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.76  E-value=9.6e-06  Score=81.11  Aligned_cols=146  Identities=9%  Similarity=-0.013  Sum_probs=71.6

Q ss_pred             hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 008022          375 TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG  454 (581)
Q Consensus       375 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  454 (581)
                      ...+..++.+|-+.|+.++|..+|+++.+.. +.+....|.+...|... +.++|.+++.+....-  .+..-|+.+...
T Consensus       116 k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~--i~~kq~~~~~e~  191 (906)
T PRK14720        116 KLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF--IKKKQYVGIEEI  191 (906)
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH--HhhhcchHHHHH
Confidence            3344455555555555555555555555544 33444555555555555 5555555555444320  000001000000


Q ss_pred             ---H--HhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHH
Q 008022          455 ---V--CRAGMVVEAFQLLGKMLIE-GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGIC  527 (581)
Q Consensus       455 ---~--~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~  527 (581)
                         +  ....+.+.-..+.+++... +..--..++..+...|....++++++.+++.+.+   ..| |..+...++.+|.
T Consensus       192 W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~---~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        192 WSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE---HDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh---cCCcchhhHHHHHHHHH
Confidence               0  0111222223333333332 2222344556666777778888888888888887   445 5556677777766

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.75  E-value=2.8e-06  Score=83.96  Aligned_cols=148  Identities=14%  Similarity=0.054  Sum_probs=124.3

Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008022          406 CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNI  485 (581)
Q Consensus       406 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  485 (581)
                      .+.+...+..|.......|.+++|..+++.+.+.. |.+......+...+.+.+++++|...+++.+... +.+......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence            34568889999999999999999999999999863 4456677788889999999999999999999875 557778889


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 008022          486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVR  559 (581)
Q Consensus       486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  559 (581)
                      ++.++.+.|++++|..+|+++..   ..| +..++..++.++...|+.++|...|+++++. ..|-...|..++.
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~  230 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV  230 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH
Confidence            99999999999999999999997   245 4778999999999999999999999999875 3444455554443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=1.3e-05  Score=66.15  Aligned_cols=251  Identities=14%  Similarity=0.099  Sum_probs=160.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 008022           37 INSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRV  116 (581)
Q Consensus        37 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (581)
                      ++-+.-.|++..++..-+......  .++..-..+.++|...|.+.....-   +.... .|.......+.......++.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchh
Confidence            455566788888887766554322  4555566677888888887665432   22222 23333333333333334444


Q ss_pred             hHH-HHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 008022          117 DGA-YKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRG  195 (581)
Q Consensus       117 ~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  195 (581)
                      +.- .++.+.+.......+......-...|++.|++++|++.... ..+..+...=...+.+..+.+-|.+.++.|.+..
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id  167 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-GENLEAAALNVQILLKMHRFDLAEKELKKMQQID  167 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            433 34455555443332323333445678888999999998887 5555555555677788888999999999998762


Q ss_pred             CCCCcccHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 008022          196 IDPNVITYSTIISSLCD----VGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVV  271 (581)
Q Consensus       196 ~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  271 (581)
                         +..|.+.|..++.+    .+...+|.-+|+++.+. .+|+..+.+....++...|++++|..+++..+..... ++.
T Consensus       168 ---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpe  242 (299)
T KOG3081|consen  168 ---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPE  242 (299)
T ss_pred             ---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHH
Confidence               55666666665553    45678888888888764 3778888888888888888899998888888877543 566


Q ss_pred             hHHHHHHHHHhcCChhh-HHHHHHHHHhC
Q 008022          272 AYSTLIHGLCSNGSMDE-AVSVSYQMEEN  299 (581)
Q Consensus       272 ~~~~l~~~~~~~~~~~~-a~~~~~~~~~~  299 (581)
                      +...++-+-...|...+ ..+.+.++...
T Consensus       243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  243 TLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence            66666655555555443 34455555543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=1.3e-05  Score=65.62  Aligned_cols=187  Identities=13%  Similarity=0.074  Sum_probs=113.1

Q ss_pred             cCCHHHHHHHHHHHHhC---C-CCCChh-hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChH
Q 008022          318 AGNLLGASQIWNRMISN---G-CSPNVV-AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVD  392 (581)
Q Consensus       318 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  392 (581)
                      ..+.++..+++..+...   | ..++.. .|..++-+....++.+.|..+++.+...- |.+...-..-...+...|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            34567777777776543   3 233333 33444455556677777777777766553 444443333334455567777


Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          393 WAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKML  472 (581)
Q Consensus       393 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  472 (581)
                      +|+++++.+.+.+ +.|..++..-+...-..|+.-+|++-+.+..+. +..|...|..+...|...|++++|.-++++++
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            7777777776655 445555555555555666666777766666655 46677777777777777777777777777776


Q ss_pred             HCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhc
Q 008022          473 IEGTKLDAITFNIIIYAYCKQG---KVNNAIQLLDRIRG  508 (581)
Q Consensus       473 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~  508 (581)
                      -.. |.++..+..++..+.-.|   +++.|.+.+.+..+
T Consensus       182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            653 335555555665544433   45566777777766

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.72  E-value=0.00035  Score=68.10  Aligned_cols=516  Identities=13%  Similarity=0.087  Sum_probs=276.2

Q ss_pred             hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 008022            5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMI   84 (581)
Q Consensus         5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   84 (581)
                      ....+++..|......+.++.+. ...+...-+-.+.+.|..++|...++.....+. .|..+...+-..|...++.++|
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHH
Confidence            34678899999999999887433 334444445566899999999988888776554 3777888888899999999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHcc-CCH---------HHH
Q 008022           85 NPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKL-GQV---------EEA  154 (581)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~---------~~a  154 (581)
                      ..+|++..+.  -|+......+..+|.+.+++.+-.++--++-+. .+.++..+=.++..+... ...         .-|
T Consensus        97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA  173 (932)
T KOG2053|consen   97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA  173 (932)
T ss_pred             HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence            9999999977  466777777888888888876554444343332 233444433344333321 111         233


Q ss_pred             HHHHHHh--CC-Ccch---HHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHH
Q 008022          155 RELAMRF--GS-GVSV---YNALINGLCKEHKIEEAFWLLC-EMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMF  227 (581)
Q Consensus       155 ~~~~~~~--~~-~~~~---~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  227 (581)
                      ...+++.  .+ ...+   .......+...|++++|+.++. ...+.-...+...-+.-+..+...+++.+..++-.++.
T Consensus       174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll  253 (932)
T KOG2053|consen  174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL  253 (932)
T ss_pred             HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            3444444  12 1111   1222344557888999999983 44443333344444556778888899999999999988


Q ss_pred             HcCCCCCcccHHHHHHHH----------------HccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH---HHhcCChhh
Q 008022          228 VRGCNPNIHSFTSLLKGY----------------LLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHG---LCSNGSMDE  288 (581)
Q Consensus       228 ~~~~~~~~~~~~~l~~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~  288 (581)
                      ..| +.|   |...+..+                ...+..+...+...+......+ ++  |-+-+.+   +..-|+.++
T Consensus       254 ~k~-~Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R-gp--~LA~lel~kr~~~~gd~ee  326 (932)
T KOG2053|consen  254 EKG-NDD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR-GP--YLARLELDKRYKLIGDSEE  326 (932)
T ss_pred             HhC-Ccc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc-Cc--HHHHHHHHHHhcccCChHH
Confidence            885 222   33222211                1112222333333333222111 11  2222222   234467777


Q ss_pred             HHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-------hHHHHHHHHHccCC-----h
Q 008022          289 AVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVV-------AYTCMVKVLCQNNM-----F  356 (581)
Q Consensus       289 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-----~  356 (581)
                      +...|-+-.  |..   ..+..=+..|...=..+.-..++.......  ++..       .+...+....-.|.     -
T Consensus       327 ~~~~y~~kf--g~k---pcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~a  399 (932)
T KOG2053|consen  327 MLSYYFKKF--GDK---PCCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPA  399 (932)
T ss_pred             HHHHHHHHh--CCC---cHhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCCh
Confidence            654443322  111   122222223333323333334444333221  1111       01111111111221     1


Q ss_pred             hHHHHHHHHHh---hCC------CCCCh---------hhHHHHHHHhhcCCChH---HHHHHHHHHhhCCCCCChhhHHH
Q 008022          357 HQAHSLIEKMA---FEN------CPPNT---------VTFNTFIKGLCGCGRVD---WAMKLLDQMKQYECLPNITTYNE  415 (581)
Q Consensus       357 ~~a~~~~~~~~---~~~------~~~~~---------~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~  415 (581)
                      +....++.+..   .+|      .-|+.         .+.+.+++.|.+.++..   +|+-+++...... +.|..+-..
T Consensus       400 d~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLl  478 (932)
T KOG2053|consen  400 DSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLL  478 (932)
T ss_pred             HHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHH
Confidence            22233332221   111      11221         23356777888887766   3444444443332 344455566


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008022          416 LLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK  495 (581)
Q Consensus       416 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  495 (581)
                      ++..|.-.|-+..|.++|..+.-..+..|...|.. ...+...|++..+...+....+---..-..+-..++.+| +.|.
T Consensus       479 LiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~  556 (932)
T KOG2053|consen  479 LIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGA  556 (932)
T ss_pred             HHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCc
Confidence            78888888988999999888876666666555533 345566788888888887776542111222333333333 5566


Q ss_pred             HHHHHHHHH---HHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022          496 VNNAIQLLD---RIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       496 ~~~A~~~~~---~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                      +.+..++..   ++.. ....--..+-+..+..+...++.++-...+..|.
T Consensus       557 ySkI~em~~fr~rL~~-S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~  606 (932)
T KOG2053|consen  557 YSKIPEMLAFRDRLMH-SLQKWACRVENLQLSLLCNADRGTQLLKLLESMK  606 (932)
T ss_pred             hhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence            666555443   2222 0000112233455566667777777666666664

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=2.8e-05  Score=63.76  Aligned_cols=190  Identities=14%  Similarity=0.091  Sum_probs=135.2

Q ss_pred             hcCChhhHHHHHHHHHhC---C-CCCcHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 008022          282 SNGSMDEAVSVSYQMEEN---S-CPPNVTT-YSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMF  356 (581)
Q Consensus       282 ~~~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  356 (581)
                      ...+.++..+++.++...   + ..++..+ +..++-+....|+.+.|...++++...- +.+..+-..-...+-..|.+
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence            345678888888877642   3 3344433 4556666677888888888888887763 32333333334445667888


Q ss_pred             hHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022          357 HQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEI  436 (581)
Q Consensus       357 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  436 (581)
                      ++|.++++.+...+ |.|..++..-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus       103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            89999998888776 677777777777777778777888888877664 3568888888889999999999998888888


Q ss_pred             HHcCCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCC
Q 008022          437 EKCGIQLNIVTYNTILHGVCRAG---MVVEAFQLLGKMLIEG  475 (581)
Q Consensus       437 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~  475 (581)
                      .-.. |.++..+..+...+...|   +.+.+.++|.+.++..
T Consensus       181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            7652 556666666766655444   5677888888888764

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=7.5e-06  Score=67.53  Aligned_cols=248  Identities=13%  Similarity=0.132  Sum_probs=165.9

Q ss_pred             hHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 008022            3 EKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFS   82 (581)
Q Consensus         3 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (581)
                      +.+.-.|.+..++..-......  +..+..-..+.++|...|.+.....-   +.. +-.|.......+......-++.+
T Consensus        16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~   89 (299)
T KOG3081|consen   16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKK   89 (299)
T ss_pred             HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhH
Confidence            3444557777776665555443  24677777889999999987655432   332 22344445555445444445544


Q ss_pred             hH-HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022           83 MI-NPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF  161 (581)
Q Consensus        83 ~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  161 (581)
                      .- ..+.+.+.......+......-...|...|++++|++......      +......=+.++.+..+++-|.+.++++
T Consensus        90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m  163 (299)
T KOG3081|consen   90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM  163 (299)
T ss_pred             HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43 3445555544334444444455567889999999999988732      2233333456677888999999999998


Q ss_pred             --CCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc
Q 008022          162 --GSGVSVYNALINGLCK----EHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNI  235 (581)
Q Consensus       162 --~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  235 (581)
                        -.+..+.+.|.+++++    .+.+.+|.-+|++|.++ .+|++.+.+....++...|++++|..+++....... .++
T Consensus       164 q~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dp  241 (299)
T KOG3081|consen  164 QQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDP  241 (299)
T ss_pred             HccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCH
Confidence              4556677767777664    55689999999999886 678888899999999999999999999999998753 345


Q ss_pred             ccHHHHHHHHHccCCH-HHHHHHHHHHHhC
Q 008022          236 HSFTSLLKGYLLGGRT-HEASDLWNRMIRE  264 (581)
Q Consensus       236 ~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~  264 (581)
                      .+...++-.....|.. +-..+.+.++...
T Consensus       242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  242 ETLANLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence            5555555554455544 4455666666665

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.69  E-value=1.3e-06  Score=68.46  Aligned_cols=115  Identities=11%  Similarity=0.077  Sum_probs=75.1

Q ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 008022          432 LVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE  511 (581)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  511 (581)
                      .++.+.... +.+......+...+...|++++|.+.++.+...+ +.+...+..++.++...|++++|...++++..   
T Consensus         5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---   79 (135)
T TIGR02552         5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA---   79 (135)
T ss_pred             hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            344444432 2233445556666777777777777777776654 44666777777777777777777777777766   


Q ss_pred             CCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 008022          512 WNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFAT  553 (581)
Q Consensus       512 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  553 (581)
                      ..| +...+..++.++...|++++|...|++.++.  .|+...
T Consensus        80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~  120 (135)
T TIGR02552        80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE  120 (135)
T ss_pred             cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence            234 4566667777777777777777777777763  455444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.67  E-value=3.2e-05  Score=69.84  Aligned_cols=151  Identities=22%  Similarity=0.272  Sum_probs=102.9

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHhc
Q 008022          380 TFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN-IVTYNTILHGVCRA  458 (581)
Q Consensus       380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  458 (581)
                      .....+...|+++.|+..++.+.... +.|...+......+.+.++.++|.+.++.+...  .|+ ....-.+..++.+.
T Consensus       311 G~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~  387 (484)
T COG4783         311 GRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKG  387 (484)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhc
Confidence            33344556677888888888876654 345555566667777888888888888888775  344 55556667778888


Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 008022          459 GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIY  538 (581)
Q Consensus       459 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  538 (581)
                      |++.+|+.+++...... +.|+..|..|..+|...|+..++...                   ....|...|+++.|...
T Consensus       388 g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A-------------------~AE~~~~~G~~~~A~~~  447 (484)
T COG4783         388 GKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLA-------------------RAEGYALAGRLEQAIIF  447 (484)
T ss_pred             CChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHH-------------------HHHHHHhCCCHHHHHHH
Confidence            88888888888877764 56777788888888887776665443                   33345567778888888


Q ss_pred             HHHHHHcCCCCCHHhH
Q 008022          539 LQKMLNEGICPNFATW  554 (581)
Q Consensus       539 ~~~~~~~~~~~~~~~~  554 (581)
                      +..+.+. .+++..++
T Consensus       448 l~~A~~~-~~~~~~~~  462 (484)
T COG4783         448 LMRASQQ-VKLGFPDW  462 (484)
T ss_pred             HHHHHHh-ccCCcHHH
Confidence            7777665 34444443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.66  E-value=2.3e-05  Score=77.67  Aligned_cols=182  Identities=10%  Similarity=0.008  Sum_probs=141.9

Q ss_pred             CCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHH
Q 008022          371 CPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNT  450 (581)
Q Consensus       371 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  450 (581)
                      .+.+...+..|.......|.+++|..+++...+.. +.+......+...+.+.+++++|...++...... +.+......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence            46678999999999999999999999999999875 3344567778889999999999999999999874 556777888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccC
Q 008022          451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSG  530 (581)
Q Consensus       451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  530 (581)
                      +..++.+.|++++|..+|+++...+ +.+..++..++.++...|+.++|...|+++.+..  .|-...|+.++      +
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~~------~  230 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRRL------V  230 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHHH------H
Confidence            8889999999999999999999853 4568899999999999999999999999998833  35555555543      3


Q ss_pred             CHHHHHHHHHHHHHc----CCCCCHHhHHHHHHHHHh
Q 008022          531 GMQEAFIYLQKMLNE----GICPNFATWNVLVRSLFS  563 (581)
Q Consensus       531 ~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~  563 (581)
                      +...-..+++++.-.    |.+.......+.+..+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (694)
T PRK15179        231 DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR  267 (694)
T ss_pred             HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence            344555666766332    222233455666655544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.63  E-value=3.5e-05  Score=77.30  Aligned_cols=224  Identities=13%  Similarity=0.040  Sum_probs=139.5

Q ss_pred             cCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC---
Q 008022           24 EGVS-CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPN---   99 (581)
Q Consensus        24 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---   99 (581)
                      .+.. .+..++..|+..+...+++++|.++.+......+ .....|-.....+.+.+++..+..+  .+...- ..+   
T Consensus        24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~-~~~~~~   99 (906)
T PRK14720         24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--NLIDSF-SQNLKW   99 (906)
T ss_pred             ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--hhhhhc-ccccch
Confidence            3444 3667899999999999999999999997776543 3333444444466677776665554  332221 112   


Q ss_pred             ----------------hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCC
Q 008022          100 ----------------VFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGS  163 (581)
Q Consensus       100 ----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  163 (581)
                                      ...+..+..+|-+.|+.++|..+|+++.+.. +-|+.+.+.+...|... +.++|++++.+   
T Consensus       100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~K---  174 (906)
T PRK14720        100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKK---  174 (906)
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHH---
Confidence                            2445556666667777777777777777775 33666777777777777 77777776544   


Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHc-CCCCCcccHHHHH
Q 008022          164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVR-GCNPNIHSFTSLL  242 (581)
Q Consensus       164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~  242 (581)
                             .+..+...+++..+.+++.++....+. +...+.                .+.+.+... |...-..++..+-
T Consensus       175 -------AV~~~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~----------------~i~~ki~~~~~~~~~~~~~~~l~  230 (906)
T PRK14720        175 -------AIYRFIKKKQYVGIEEIWSKLVHYNSD-DFDFFL----------------RIERKVLGHREFTRLVGLLEDLY  230 (906)
T ss_pred             -------HHHHHHhhhcchHHHHHHHHHHhcCcc-cchHHH----------------HHHHHHHhhhccchhHHHHHHHH
Confidence                   344466666777777777777765211 222222                222222221 1122233444555


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 008022          243 KGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLC  281 (581)
Q Consensus       243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  281 (581)
                      ..|-..++++++..+++.+++.... |.....-++.+|.
T Consensus       231 ~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        231 EPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence            6677788899999999998887533 6666677777765

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.60  E-value=3.2e-06  Score=66.17  Aligned_cols=116  Identities=13%  Similarity=0.032  Sum_probs=88.2

Q ss_pred             HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008022          397 LLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT  476 (581)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  476 (581)
                      .++...... +.+......+...+...|++++|.+.++.+...+ +.+...+..+...+...|++++|...++.....+ 
T Consensus         5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-   81 (135)
T TIGR02552         5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-   81 (135)
T ss_pred             hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            445555543 2234455667777888899999999998888764 5577788888888888899999999998888765 


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHh
Q 008022          477 KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIIS  518 (581)
Q Consensus       477 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~  518 (581)
                      +.+...+..++.+|...|++++|.+.++++.+   +.|+...
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~  120 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIE---ICGENPE  120 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hccccch
Confidence            55677888888899999999999999998888   4464443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12854 PPR_1: PPR repeat

Probab=98.52  E-value=2e-07  Score=51.31  Aligned_cols=32  Identities=50%  Similarity=0.937  Sum_probs=20.4

Q ss_pred             CCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022          440 GIQLNIVTYNTILHGVCRAGMVVEAFQLLGKM  471 (581)
Q Consensus       440 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  471 (581)
                      |++||..+|+.++.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45666666666666666666666666666655

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.49  E-value=1.3e-05  Score=63.27  Aligned_cols=116  Identities=16%  Similarity=0.054  Sum_probs=63.2

Q ss_pred             cCCHHHHHHHHHHHHHcCCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHH
Q 008022          423 VNRVKEAFELVTEIEKCGIQLN---IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVN  497 (581)
Q Consensus       423 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~  497 (581)
                      .++...+...++.+.+.. +.+   ......+...+...|++++|...|+.+......|+  ......++.++...|+++
T Consensus        24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            556666666666666542 222   12223344555666666666666666666542222  123344556666666666


Q ss_pred             HHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022          498 NAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKM  542 (581)
Q Consensus       498 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (581)
                      +|+..++....   -...+..+...+.+|...|++++|...|+++
T Consensus       103 ~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  103 EALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            66666655332   1123445556666666666666666666654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.49  E-value=4.4e-05  Score=69.05  Aligned_cols=110  Identities=13%  Similarity=0.142  Sum_probs=56.0

Q ss_pred             HHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-cchHHHHHHHHHccCCHHH
Q 008022           75 LLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPD-AVSYTTIVSSICKLGQVEE  153 (581)
Q Consensus        75 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~  153 (581)
                      ....|+++.|+..++.+...- |.|+..+......+...++.++|.+.++.+...  .|+ ......+..++.+.|++.+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence            344555555555555555442 233333344445555555555555555555554  222 3334444555555555555


Q ss_pred             HHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHH
Q 008022          154 ARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWL  187 (581)
Q Consensus       154 a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~  187 (581)
                      |+..++..    |.++..|..|.++|...|+..++...
T Consensus       393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A  430 (484)
T COG4783         393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA  430 (484)
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence            55555554    45555555555555555555555443

>PF12854 PPR_1: PPR repeat

Probab=98.46  E-value=3e-07  Score=50.60  Aligned_cols=32  Identities=53%  Similarity=0.941  Sum_probs=19.8

Q ss_pred             CCCCChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 008022           95 GMEPNVFTYNILLKALCKNNRVDGAYKLLVEM  126 (581)
Q Consensus        95 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  126 (581)
                      |+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45566666666666666666666666666655

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.41  E-value=0.00012  Score=56.92  Aligned_cols=133  Identities=13%  Similarity=0.070  Sum_probs=76.4

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHH
Q 008022          407 LPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK-LDAITFNI  485 (581)
Q Consensus       407 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~  485 (581)
                      .|+...-..|..++...|+..+|...|++...--...|......+.++....+++..|...++++.+.+.. -++.....
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            45555555666666666666666666666655434455666666666666666666666666666654210 02223344


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022          486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKM  542 (581)
Q Consensus       486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (581)
                      +.+.|...|.+.+|...|+.+..   .-|+...-......+.++|+.++|..-+...
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            55666666666666666666666   3355544444445555666555555444443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.40  E-value=1.6e-05  Score=72.60  Aligned_cols=126  Identities=21%  Similarity=0.172  Sum_probs=75.7

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q 008022          377 TFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVC  456 (581)
Q Consensus       377 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  456 (581)
                      ....++..+...++++.|..+++++.+..  |+.  ...++..+...++-.+|.+++++..+.. +.+...+..-...+.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34455555666666777777777666543  332  3345555556666666666666666542 334555555555566


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          457 RAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       457 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +.++++.|.++.+++.... +.+..+|..|+.+|...|+++.|+-.+..+.-
T Consensus       246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            6666666777666666652 33455666666677777777776666665554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.38  E-value=1.7e-05  Score=62.55  Aligned_cols=128  Identities=16%  Similarity=0.120  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC--HHhHH
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD---AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD--IISYT  520 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~  520 (581)
                      ..|..++..+ ..++...+...++.+.... +.+   ......++..+...|++++|...|+.+.... -.|+  .....
T Consensus        13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l   89 (145)
T PF09976_consen   13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARL   89 (145)
T ss_pred             HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHH
Confidence            3444555444 4889999999999999874 223   3345567788999999999999999999833 2222  23556


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022          521 SLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM  578 (581)
Q Consensus       521 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  578 (581)
                      .+...+...|++++|+..++.....  ...+..+...+..+.+.|+.++|++.+++.+
T Consensus        90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            6788999999999999999775432  3345567788889999999999999998764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.30  E-value=2.3e-05  Score=60.22  Aligned_cols=94  Identities=10%  Similarity=-0.115  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHH
Q 008022          448 YNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGI  526 (581)
Q Consensus       448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~  526 (581)
                      .-.+...+...|++++|.++|+-+.... +-+..-|..|+-++-..|++++|+..|..+..   +.| |+..+..++.++
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~~~ag~c~  113 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHHHHHH
Confidence            3344555667788888888887777654 44666677777788888888888888888777   445 666777788888


Q ss_pred             HccCCHHHHHHHHHHHHHc
Q 008022          527 CNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       527 ~~~g~~~~A~~~~~~~~~~  545 (581)
                      ...|+.+.|.+.|+..+..
T Consensus       114 L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        114 LACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            8888888888888877653

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=1.6e-05  Score=67.14  Aligned_cols=96  Identities=22%  Similarity=0.209  Sum_probs=56.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022          419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN  498 (581)
Q Consensus       419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  498 (581)
                      -+.+.+++++|+..|.+.++.. +-|.+.|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence            3445566666666666666642 4455555555666666666666666666666543 2234456666666666666666


Q ss_pred             HHHHHHHHhcCCCCCCCHHhH
Q 008022          499 AIQLLDRIRGGGEWNPDIISY  519 (581)
Q Consensus       499 A~~~~~~~~~~~~~~p~~~~~  519 (581)
                      |++.|++..+   +.|+..+|
T Consensus       168 A~~aykKaLe---ldP~Ne~~  185 (304)
T KOG0553|consen  168 AIEAYKKALE---LDPDNESY  185 (304)
T ss_pred             HHHHHHhhhc---cCCCcHHH
Confidence            6666666666   55644443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.29  E-value=0.0035  Score=59.64  Aligned_cols=200  Identities=13%  Similarity=0.108  Sum_probs=119.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC-CCCC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC
Q 008022           62 KPTVKIYNHILDALLAENRFSMINPIYSNMKRD-GMEP--------NVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCA  132 (581)
Q Consensus        62 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  132 (581)
                      .|.+..|..+.......-.++.|...|-+.... |++.        +...-.+  ..-+--|++++|.++|-++.+++  
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~a--ei~~~~g~feeaek~yld~drrD--  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRA--EISAFYGEFEEAEKLYLDADRRD--  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhH--hHhhhhcchhHhhhhhhccchhh--
Confidence            388889998888777777777777766555432 2211        0111111  22223588999999988887662  


Q ss_pred             CCcchHHHHHHHHHccCCHHHHHHHHHHhCCC------cchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 008022          133 PDAVSYTTIVSSICKLGQVEEARELAMRFGSG------VSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTI  206 (581)
Q Consensus       133 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  206 (581)
                             ..+..+.+.|++-...++++.-..+      ..+|+.+...+.....|++|.+.|..-...         ...
T Consensus       765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~  828 (1189)
T KOG2041|consen  765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ  828 (1189)
T ss_pred             -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence                   2366777888888888877765221      345777777777777777777777543221         234


Q ss_pred             HHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCh
Q 008022          207 ISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSM  286 (581)
Q Consensus       207 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  286 (581)
                      +.++.+..++++-+.+...+     +.+....-.+..++...|.-++|.+.+-+.-.    |     ...+..|...+++
T Consensus       829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW  894 (1189)
T KOG2041|consen  829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQW  894 (1189)
T ss_pred             HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHH
Confidence            55666655555554444333     33455556666777777777777665533211    1     1234556666677


Q ss_pred             hhHHHHHHH
Q 008022          287 DEAVSVSYQ  295 (581)
Q Consensus       287 ~~a~~~~~~  295 (581)
                      .+|.++-+.
T Consensus       895 ~~avelaq~  903 (1189)
T KOG2041|consen  895 GEAVELAQR  903 (1189)
T ss_pred             HHHHHHHHh
Confidence            777665443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.26  E-value=5.5e-05  Score=69.15  Aligned_cols=126  Identities=15%  Similarity=0.128  Sum_probs=98.0

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 008022          342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLL  421 (581)
Q Consensus       342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  421 (581)
                      ....++..+...++++.|..+++++....  |  .....++..+...++..+|.+++++..+.. +.+...+..-...+.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--p--ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--P--EVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC--C--cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            34456666777888999999999988764  3  345557778888888889999998887654 346666666777788


Q ss_pred             hcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022          422 RVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLI  473 (581)
Q Consensus       422 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  473 (581)
                      +.++++.|+.+.+++.+.. |.+..+|..|..+|...|+++.|+..++.+-.
T Consensus       246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            8999999999999998862 55566899999999999999999988877654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.24  E-value=0.0031  Score=60.01  Aligned_cols=156  Identities=15%  Similarity=0.087  Sum_probs=78.4

Q ss_pred             cCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcC-CCCCcccHHHHHHHHHccCCHHHHHH
Q 008022          178 EHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRG-CNPNIHSFTSLLKGYLLGGRTHEASD  256 (581)
Q Consensus       178 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~  256 (581)
                      -|++++|.++|-++-+++         ..+..+.+.|++-...++++.--... ...-..+++.+...+.....|+.|.+
T Consensus       747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~  817 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK  817 (1189)
T ss_pred             hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466677777766655441         24555666666666665554311000 00013445556666666666666666


Q ss_pred             HHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 008022          257 LWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGC  336 (581)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  336 (581)
                      .|......         ...+.++.+..++++-..+...     .|.+....-.+..++.+.|.-++|.+.|-+...   
T Consensus       818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---  880 (1189)
T KOG2041|consen  818 YYSYCGDT---------ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL---  880 (1189)
T ss_pred             HHHhccch---------HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC---
Confidence            66543221         1234455555555544433322     233445555666666666666666655543211   


Q ss_pred             CCChhhHHHHHHHHHccCChhHHHHHHHH
Q 008022          337 SPNVVAYTCMVKVLCQNNMFHQAHSLIEK  365 (581)
Q Consensus       337 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  365 (581)
                       |     ...+..|...++|.+|.++-+.
T Consensus       881 -p-----kaAv~tCv~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  881 -P-----KAAVHTCVELNQWGEAVELAQR  903 (1189)
T ss_pred             -c-----HHHHHHHHHHHHHHHHHHHHHh
Confidence             1     1233445555566666655544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.22  E-value=7.5e-05  Score=56.87  Aligned_cols=99  Identities=20%  Similarity=0.142  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTK--LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      ++..++..+.+.|++++|.+.+..+......  .....+..++.++.+.|+++.|.+.++.+....+-.| ...++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            4455566677778888888888887765311  1134566677888888888888888888776332222 245677777


Q ss_pred             HHHHccCCHHHHHHHHHHHHHc
Q 008022          524 WGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       524 ~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      .++...|++++|...++++++.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            7788888888888888888774

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.21  E-value=0.00013  Score=56.08  Aligned_cols=104  Identities=13%  Similarity=-0.043  Sum_probs=85.0

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008022          410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA  489 (581)
Q Consensus       410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  489 (581)
                      ....-.+...+...|++++|..+|+.+...+ +-+..-|..|..++-..|++++|+..|..+.... +.|+..+..++.+
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c  112 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAEC  112 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHH
Confidence            3344455666778999999999999988764 4566777788888889999999999999999886 4688889999999


Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCCC
Q 008022          490 YCKQGKVNNAIQLLDRIRGGGEWNPD  515 (581)
Q Consensus       490 ~~~~g~~~~A~~~~~~~~~~~~~~p~  515 (581)
                      +...|+.+.|.+.|+.+....+-.|.
T Consensus       113 ~L~lG~~~~A~~aF~~Ai~~~~~~~~  138 (157)
T PRK15363        113 YLACDNVCYAIKALKAVVRICGEVSE  138 (157)
T ss_pred             HHHcCCHHHHHHHHHHHHHHhccChh
Confidence            99999999999999998885544443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.20  E-value=5.6e-05  Score=69.56  Aligned_cols=89  Identities=16%  Similarity=0.004  Sum_probs=50.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 008022          418 DGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVN  497 (581)
Q Consensus       418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  497 (581)
                      ..+...|++++|++.|+++++.. +.+...|..+..+|...|++++|+..+++++... +.+...|..++.+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence            34445566666666666665543 3345555555555666666666666666665543 334555555566666666666


Q ss_pred             HHHHHHHHHhc
Q 008022          498 NAIQLLDRIRG  508 (581)
Q Consensus       498 ~A~~~~~~~~~  508 (581)
                      +|+..|+++..
T Consensus        88 eA~~~~~~al~   98 (356)
T PLN03088         88 TAKAALEKGAS   98 (356)
T ss_pred             HHHHHHHHHHH
Confidence            66666666655

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=0.00025  Score=62.76  Aligned_cols=258  Identities=14%  Similarity=0.032  Sum_probs=110.5

Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHH
Q 008022          245 YLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGA  324 (581)
Q Consensus       245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  324 (581)
                      +.+..++..|+..+....+..+. +...|..-+..+...++++++.--.+.-.+.. +.........-+++...++..+|
T Consensus        59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A  136 (486)
T KOG0550|consen   59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEA  136 (486)
T ss_pred             HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHH
Confidence            44455566666666666655432 23334444445555555555544433332221 11122223333333333444444


Q ss_pred             HHHHH---------------HHHhCCC-CCChhhHHHH-HHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 008022          325 SQIWN---------------RMISNGC-SPNVVAYTCM-VKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCG  387 (581)
Q Consensus       325 ~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  387 (581)
                      .+.++               ....... +|.-..+..+ ..++.-.+++++|.+.--...+.. +.+......-..++.-
T Consensus       137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy  215 (486)
T KOG0550|consen  137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYY  215 (486)
T ss_pred             HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccccccc
Confidence            43333               1111110 1111222222 233445556666665555554432 2222222222233344


Q ss_pred             CCChHHHHHHHHHHhhCCCCCChhhHH-------------HHHHHHHhcCCHHHHHHHHHHHHHc---CCcccHHHHHHH
Q 008022          388 CGRVDWAMKLLDQMKQYECLPNITTYN-------------ELLDGLLRVNRVKEAFELVTEIEKC---GIQLNIVTYNTI  451 (581)
Q Consensus       388 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l  451 (581)
                      .++.+.+...|++.+..+  |+...-.             .-..-..+.|++..|.+.|.+.+..   ...++...|...
T Consensus       216 ~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr  293 (486)
T KOG0550|consen  216 NDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR  293 (486)
T ss_pred             ccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence            456666666666665544  3322111             1111223445555555555555532   122333344444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ..+..+.|+.++|+.--+..+..+ +.=...+..-+.++...++|++|.+-++++.+
T Consensus       294 a~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  294 ALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             HhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444455555555555555554421 11112233333444455555555555555554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.15  E-value=7.4e-06  Score=57.43  Aligned_cols=80  Identities=24%  Similarity=0.255  Sum_probs=41.3

Q ss_pred             cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHH
Q 008022          458 AGMVVEAFQLLGKMLIEGTK-LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEA  535 (581)
Q Consensus       458 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A  535 (581)
                      .|+++.|+.+++++.+.... ++...+..++.+|.+.|++++|++++++ .+   ..| +......++.++.+.|++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            35566666666666654321 1333444456666666666666666655 22   122 223333445566666666666


Q ss_pred             HHHHHH
Q 008022          536 FIYLQK  541 (581)
Q Consensus       536 ~~~~~~  541 (581)
                      ++++++
T Consensus        78 i~~l~~   83 (84)
T PF12895_consen   78 IKALEK   83 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            666654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.10  E-value=7.8e-05  Score=54.18  Aligned_cols=91  Identities=22%  Similarity=0.213  Sum_probs=50.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHc
Q 008022          450 TILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICN  528 (581)
Q Consensus       450 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~  528 (581)
                      .+...+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.++.....   .| +..++..++..+..
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~   80 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHHHHH
Confidence            34445555666666666666665542 223345555566666666666666666665552   23 33455555566666


Q ss_pred             cCCHHHHHHHHHHHHH
Q 008022          529 SGGMQEAFIYLQKMLN  544 (581)
Q Consensus       529 ~g~~~~A~~~~~~~~~  544 (581)
                      .|++++|...+++..+
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            6666666666666554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.09  E-value=6.2e-05  Score=57.34  Aligned_cols=98  Identities=13%  Similarity=-0.022  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHhHH
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN----FATWN  555 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~  555 (581)
                      .++..++..+.+.|++++|.+.+..+.+..+-.| ....+..++.++...|++++|...++++...  .|+    ...+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~   80 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALL   80 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHH
Confidence            4567788899999999999999999987432222 2456777999999999999999999999874  233    45677


Q ss_pred             HHHHHHHhccCCCChHHHHHHHhhc
Q 008022          556 VLVRSLFSNLGHLGPVYILDDIMAN  580 (581)
Q Consensus       556 ~l~~~~~~~g~~~~a~~~~~~~~~~  580 (581)
                      .+..++...|+.++|.+.++++++.
T Consensus        81 ~~~~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        81 KLGMSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHH
Confidence            8888999999999999999988763

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.09  E-value=0.00046  Score=56.39  Aligned_cols=113  Identities=14%  Similarity=0.116  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      .+..+...+...|++++|...+++.++....+.  ...+..++.++.+.|++++|+..++++..   ..| +...+..++
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg  113 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence            445555566666777777777766665432221  34566666677777777777777777666   334 344555556


Q ss_pred             HHHHccCC--------------HHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccC
Q 008022          524 WGICNSGG--------------MQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLG  566 (581)
Q Consensus       524 ~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  566 (581)
                      .++...|+              +++|.++++++...  .|+.  +..++.-+...|+
T Consensus       114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~~  166 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcCc
Confidence            66655554              45666666666652  3443  4444444444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.07  E-value=0.00011  Score=53.44  Aligned_cols=94  Identities=19%  Similarity=0.168  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008022          413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK  492 (581)
Q Consensus       413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  492 (581)
                      +..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++...... +.+..++..++..+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            4455666777888888888888877653 3344666777777888888888888888887764 3455677788888888


Q ss_pred             cCCHHHHHHHHHHHhc
Q 008022          493 QGKVNNAIQLLDRIRG  508 (581)
Q Consensus       493 ~g~~~~A~~~~~~~~~  508 (581)
                      .|++++|...+..+.+
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            8888888888888776

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.07  E-value=0.00015  Score=58.97  Aligned_cols=95  Identities=14%  Similarity=0.026  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHH
Q 008022          445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL--DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTS  521 (581)
Q Consensus       445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~  521 (581)
                      ...+..+...+...|++++|...+++.+.....+  ...++..++.+|...|++++|+..++++..   +.| ...++..
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~  111 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence            4455666677777888888888888887653222  234778888888888888888888888887   344 3455666


Q ss_pred             HHHHHH-------ccCCHHHHHHHHHHH
Q 008022          522 LLWGIC-------NSGGMQEAFIYLQKM  542 (581)
Q Consensus       522 l~~~~~-------~~g~~~~A~~~~~~~  542 (581)
                      ++..+.       ..|+++.|+..+++.
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            666666       777877665555544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.06  E-value=7.4e-05  Score=63.24  Aligned_cols=97  Identities=12%  Similarity=0.050  Sum_probs=68.0

Q ss_pred             HhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHH
Q 008022          384 GLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE  463 (581)
Q Consensus       384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  463 (581)
                      -..+.+++.+|+..|...++.. +.|.+-|..-..+|.+.|.++.|++-.+..+..+ +--..+|..|..+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence            3556677888888888877765 3456666677777888888888877777776643 3345677777778888888888


Q ss_pred             HHHHHHHHHHCCCCcCHHHHH
Q 008022          464 AFQLLGKMLIEGTKLDAITFN  484 (581)
Q Consensus       464 a~~~~~~~~~~~~~~~~~~~~  484 (581)
                      |++.|++.++.  .|+-.+|.
T Consensus       168 A~~aykKaLel--dP~Ne~~K  186 (304)
T KOG0553|consen  168 AIEAYKKALEL--DPDNESYK  186 (304)
T ss_pred             HHHHHHhhhcc--CCCcHHHH
Confidence            88888877763  55555443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=98.05  E-value=0.0089  Score=54.11  Aligned_cols=127  Identities=18%  Similarity=0.192  Sum_probs=85.2

Q ss_pred             HHhcCC-HHHHHHHHHHHHHcCCcccHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHHCCCCc----CHHHHHHHH
Q 008022          420 LLRVNR-VKEAFELVTEIEKCGIQLNIVTYNTIL----HGVCR---AGMVVEAFQLLGKMLIEGTKL----DAITFNIII  487 (581)
Q Consensus       420 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~  487 (581)
                      +-+.|. -++|+++++.+.+.. +-|..+-+.+.    ..|.+   ...+.+-..+-+-+.+.|++|    +...-|.+.
T Consensus       389 lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La  467 (549)
T PF07079_consen  389 LWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA  467 (549)
T ss_pred             HHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence            444555 788899998888752 33443333322    22322   234455555555556667766    333445554


Q ss_pred             H--HHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 008022          488 Y--AYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWN  555 (581)
Q Consensus       488 ~--~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  555 (581)
                      +  -+...|++.++.-.-.-+.+   +.|++.+|..++-++....++++|..++..+     +|+..+++
T Consensus       468 DAEyLysqgey~kc~~ys~WL~~---iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~d  529 (549)
T PF07079_consen  468 DAEYLYSQGEYHKCYLYSSWLTK---IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRD  529 (549)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHH---hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHH
Confidence            3  35678999999988888887   7899999999999999999999999999876     45555544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.04  E-value=1e-05  Score=56.71  Aligned_cols=81  Identities=9%  Similarity=0.124  Sum_probs=53.3

Q ss_pred             cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 008022            8 KCEIDGVQYLLQQMKVEGVS-CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINP   86 (581)
Q Consensus         8 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~   86 (581)
                      +|+++.|..+++++.+..+. ++...+..++.+|.+.|++++|..+++. ...++ .+......+..++.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            57788888888888876542 2445566678888888888888888877 32222 233444455677778888888887


Q ss_pred             HHHH
Q 008022           87 IYSN   90 (581)
Q Consensus        87 ~~~~   90 (581)
                      .|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7765

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.04  E-value=0.00054  Score=66.03  Aligned_cols=142  Identities=13%  Similarity=0.020  Sum_probs=85.1

Q ss_pred             CCChhhHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHH
Q 008022          407 LPNITTYNELLDGLLR--V---NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA--------GMVVEAFQLLGKMLI  473 (581)
Q Consensus       407 ~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~  473 (581)
                      +.+...|...+++...  .   ++...|..+|++..+.. |.....+..+..++...        .+...+.+...+...
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            4455566666555332  2   23556777777777652 22233444333333221        123344444444333


Q ss_pred             C-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022          474 E-GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA  552 (581)
Q Consensus       474 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  552 (581)
                      . ..+.++.++..++......|++++|...++++..   +.|+...|..++..+...|+.++|.+.++++..  +.|...
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~p  487 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGEN  487 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCc
Confidence            2 1233556677676666667888888888888887   557777788888888888888888888888876  456655


Q ss_pred             hH
Q 008022          553 TW  554 (581)
Q Consensus       553 ~~  554 (581)
                      +|
T Consensus       488 t~  489 (517)
T PRK10153        488 TL  489 (517)
T ss_pred             hH
Confidence            54

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.02  E-value=0.00021  Score=65.87  Aligned_cols=86  Identities=15%  Similarity=-0.004  Sum_probs=43.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHH
Q 008022          455 VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQ  533 (581)
Q Consensus       455 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~  533 (581)
                      +...|++++|++.|++++... +.+...+..++.+|...|++++|+..++++..   +.| +...|..++.+|...|+++
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCCHH
Confidence            344455555555555555443 23444455555555555555555555555554   233 3444455555555555555


Q ss_pred             HHHHHHHHHHH
Q 008022          534 EAFIYLQKMLN  544 (581)
Q Consensus       534 ~A~~~~~~~~~  544 (581)
                      +|+..|+++++
T Consensus        88 eA~~~~~~al~   98 (356)
T PLN03088         88 TAKAALEKGAS   98 (356)
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.02  E-value=0.0002  Score=63.45  Aligned_cols=131  Identities=11%  Similarity=0.007  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022          412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG-VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY  490 (581)
Q Consensus       412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  490 (581)
                      +|..++....+.+..+.|..+|.++.+.+ ..+...|...... +...++.+.|.++|+..++. .+.+...|...+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            45555666666666666666666666432 2233334333333 22245555567777666665 344556666666666


Q ss_pred             HhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          491 CKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       491 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      ...|+.+.|..+|+++....+... ....|...+.-=.+.|+.+.+.++.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            666777777777776666321111 123566666666666777666666666665

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.01  E-value=0.0025  Score=49.94  Aligned_cols=134  Identities=10%  Similarity=-0.065  Sum_probs=77.5

Q ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHH
Q 008022          442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTS  521 (581)
Q Consensus       442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~  521 (581)
                      .|+...-..|..+....|+..+|...|++...--...|...+..+.++....+++..|...++++.+..+-..++.....
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            45555555566666666666666666666665434445666666666666666666666666666652211113334455


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHH
Q 008022          522 LLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDI  577 (581)
Q Consensus       522 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  577 (581)
                      +.+.|...|++.+|...|+.+++.  .|++.........+.++|+.++|...+.++
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            666666666666666666666653  444444333444456666666655544443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=0.00055  Score=58.54  Aligned_cols=128  Identities=10%  Similarity=0.037  Sum_probs=99.2

Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---cchHHHH
Q 008022           11 IDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR---FSMINPI   87 (581)
Q Consensus        11 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~   87 (581)
                      .+....-++.-+..++. |.+.|..|...|...|+++.|...|.+..+..+ ++++.+..+..++....+   ..++..+
T Consensus       138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            34444555555556554 999999999999999999999999999998665 788888888877665433   5578999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHH
Q 008022           88 YSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVS  143 (581)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  143 (581)
                      |+++.+.+ +.|+.....+...+...|++.+|...|+.|.+.. + ....+..++.
T Consensus       216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l-p-~~~~rr~~ie  268 (287)
T COG4235         216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL-P-ADDPRRSLIE  268 (287)
T ss_pred             HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-C-CCCchHHHHH
Confidence            99999886 6777888888889999999999999999999873 3 3333444443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.96  E-value=1.9e-05  Score=44.35  Aligned_cols=33  Identities=55%  Similarity=1.037  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 008022          167 VYNALINGLCKEHKIEEAFWLLCEMVDRGIDPN  199 (581)
Q Consensus       167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  199 (581)
                      +||.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            577777777777777777777777777777776

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.96  E-value=0.00083  Score=49.97  Aligned_cols=94  Identities=18%  Similarity=0.140  Sum_probs=62.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHH
Q 008022          451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGIC  527 (581)
Q Consensus       451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~  527 (581)
                      +..++-..|+.++|+.+|++.+..|+...  ...+..+...+...|++++|..++++....++-.+ +......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            34566677888888888888887765543  33566677788888888888888888776332211 1222233445667


Q ss_pred             ccCCHHHHHHHHHHHHH
Q 008022          528 NSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       528 ~~g~~~~A~~~~~~~~~  544 (581)
                      ..|+.++|++.+-..+.
T Consensus        87 ~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   87 NLGRPKEALEWLLEALA  103 (120)
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            78888888887766653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.95  E-value=0.0034  Score=54.17  Aligned_cols=67  Identities=7%  Similarity=-0.005  Sum_probs=42.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 008022           29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVK--IYNHILDALLAENRFSMINPIYSNMKRDG   95 (581)
Q Consensus        29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   95 (581)
                      ++..+...+..+...|++++|.+.|+.+....+.+...  ..-.+..++.+.++++.|...+++..+..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            44455556666677777777777777777644322111  12344566677777777777777777663

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.93  E-value=5.5e-05  Score=49.91  Aligned_cols=56  Identities=21%  Similarity=0.325  Sum_probs=38.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      ++..+.+.|++++|++.|+++.+   ..| +...+..++.++...|++++|..+|+++++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALK---QDPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHC---CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45566777777777777777777   335 556677777777777777777777777765

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.92  E-value=2.3e-05  Score=44.01  Aligned_cols=33  Identities=36%  Similarity=0.824  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 008022          518 SYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN  550 (581)
Q Consensus       518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  550 (581)
                      +|+.++.+|.+.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            688889999999999999999999988888887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.92  E-value=0.00016  Score=51.29  Aligned_cols=80  Identities=25%  Similarity=0.416  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCC--------cchHHHHHHHHHhCCCCCChhhH
Q 008022           33 FISVINSYRRVGLAEQALKMFYRIREFGL-KPTVKIYNHILDALLAENR--------FSMINPIYSNMKRDGMEPNVFTY  103 (581)
Q Consensus        33 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~  103 (581)
                      ....+..+...+++.....+|+.+.+.|+ .|++.+|+.++.+.++..-        .-..+.+|+.|...+++|+..+|
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34456667777888888888888888888 7888888888887766432        33567788888888888888888


Q ss_pred             HHHHHHHHh
Q 008022          104 NILLKALCK  112 (581)
Q Consensus       104 ~~l~~~~~~  112 (581)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            888877653

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.92  E-value=0.00025  Score=65.23  Aligned_cols=120  Identities=13%  Similarity=0.089  Sum_probs=63.3

Q ss_pred             CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHH
Q 008022          302 PPNVTTYSALIDGFAKAGNLLGASQIWNRMISN--GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFN  379 (581)
Q Consensus       302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  379 (581)
                      +.+......++..+....+.+.+..++-+....  ....-..+...+++.|...|..+.++.++..-...|+-||..+++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            444445555555555555555555555555443  111112233455566666666666666666655556556666666


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 008022          380 TFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLL  421 (581)
Q Consensus       380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  421 (581)
                      .+++.+.+.|++..|.++...|...+...+..++...+.+|.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~  184 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY  184 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence            666666666666666666555554444444444444444433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.92  E-value=0.00053  Score=59.50  Aligned_cols=104  Identities=12%  Similarity=0.050  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      .|...+..+.+.|++++|...|+.+++..+...  +..+..++.+|...|++++|+..|+++...++-.| ....+..++
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            344444444556788888888888777532211  35667778888888888888888888876554444 355666677


Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022          524 WGICNSGGMQEAFIYLQKMLNEGICPNFA  552 (581)
Q Consensus       524 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  552 (581)
                      .++...|+.++|..+|+++++.  .|+..
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~--yP~s~  251 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKK--YPGTD  251 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence            7777888888888888888763  45543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.90  E-value=0.00091  Score=59.66  Aligned_cols=144  Identities=13%  Similarity=0.068  Sum_probs=80.6

Q ss_pred             CHHHHHHHHHHHHH----cCCccc--HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHH
Q 008022          425 RVKEAFELVTEIEK----CGIQLN--IVTYNTILHGVCRA-GMVVEAFQLLGKMLIE----GTKL--DAITFNIIIYAYC  491 (581)
Q Consensus       425 ~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~  491 (581)
                      ++++|.+.+++...    .| .++  ..++..+...|... |++++|.+.|+++.+.    + .+  -..++..++..+.
T Consensus        89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~  166 (282)
T PF14938_consen   89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA  166 (282)
T ss_dssp             THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence            56666666655432    22 222  23455556666666 7888888888887754    2 11  1335667778888


Q ss_pred             hcCCHHHHHHHHHHHhcCCCCCC----CHH-hHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCC--HHhHHHHHHHHH
Q 008022          492 KQGKVNNAIQLLDRIRGGGEWNP----DII-SYTSLLWGICNSGGMQEAFIYLQKMLNE--GICPN--FATWNVLVRSLF  562 (581)
Q Consensus       492 ~~g~~~~A~~~~~~~~~~~~~~p----~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~~~  562 (581)
                      +.|++++|+++|+++....--.|    +.. .+...+-++...|++..|...+++....  ++..+  ......++.++-
T Consensus       167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~  246 (282)
T PF14938_consen  167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE  246 (282)
T ss_dssp             HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence            88888888888888765221111    121 2334455667778888888888888653  22222  234555665555


Q ss_pred             hccCCCChH
Q 008022          563 SNLGHLGPV  571 (581)
Q Consensus       563 ~~g~~~~a~  571 (581)
                      . |+.+.-.
T Consensus       247 ~-~D~e~f~  254 (282)
T PF14938_consen  247 E-GDVEAFT  254 (282)
T ss_dssp             T-T-CCCHH
T ss_pred             h-CCHHHHH
Confidence            4 5555433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.90  E-value=4.9e-05  Score=50.92  Aligned_cols=63  Identities=22%  Similarity=0.325  Sum_probs=39.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccC-CHHHHHHHHHHHHH
Q 008022          479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSG-GMQEAFIYLQKMLN  544 (581)
Q Consensus       479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~  544 (581)
                      ++.+|..++..+...|++++|+..|+++.+   +.| ++..|..++.++...| ++++|++.+++.++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~---~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE---LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH---HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            345566666666666666666666666666   344 4556666666666666 56666666666655

...

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.89  E-value=0.016  Score=51.50  Aligned_cols=245  Identities=12%  Similarity=0.019  Sum_probs=106.0

Q ss_pred             cCChhhHHHHHHHHHhCCCCCcHHhHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhH
Q 008022          283 NGSMDEAVSVSYQMEENSCPPNVTTYSA----LIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQ  358 (581)
Q Consensus       283 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  358 (581)
                      .|+++.|.+-|+.|...     +.+-..    +.-.-.+.|+.+.|.++-++....-+. -.......+...+..|+|+.
T Consensus       133 eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~  206 (531)
T COG3898         133 EGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG  206 (531)
T ss_pred             cCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence            46666666666666542     222111    111223455555555555554443211 22344555555666666666


Q ss_pred             HHHHHHHHhhCC-CCCChhh--HHHHHHHhh---cCCChHHHHHHHHHHhhCCCCCChhh-HHHHHHHHHhcCCHHHHHH
Q 008022          359 AHSLIEKMAFEN-CPPNTVT--FNTFIKGLC---GCGRVDWAMKLLDQMKQYECLPNITT-YNELLDGLLRVNRVKEAFE  431 (581)
Q Consensus       359 a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~  431 (581)
                      |+++++.-.... +.++..-  -..|+.+-.   -..+...|...-.+..+.  .|+... -.....++.+.|+..++-.
T Consensus       207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~  284 (531)
T COG3898         207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK  284 (531)
T ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence            666665543321 1122111  111222111   012333444433333332  233322 1222345555666666666


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 008022          432 LVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE-GT-KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGG  509 (581)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  509 (581)
                      +++.+-+.  .|.+..+...  ...+.|+..  ..-+++..+. .+ +.+......+..+....|++..|..--+.+.. 
T Consensus       285 ilE~aWK~--ePHP~ia~lY--~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-  357 (531)
T COG3898         285 ILETAWKA--EPHPDIALLY--VRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-  357 (531)
T ss_pred             HHHHHHhc--CCChHHHHHH--HHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence            66666554  3333332221  123334322  1112221111 01 22344445555555556666666555555554 


Q ss_pred             CCCCCCHHhHHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 008022          510 GEWNPDIISYTSLLWGICNS-GGMQEAFIYLQKMLN  544 (581)
Q Consensus       510 ~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~  544 (581)
                        ..|....|..|...-... |+-.++...+-+.++
T Consensus       358 --~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         358 --EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             --hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence              445555555555544332 555566655555554

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.89  E-value=2.4e-05  Score=43.52  Aligned_cols=33  Identities=42%  Similarity=0.624  Sum_probs=23.8

Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC
Q 008022          101 FTYNILLKALCKNNRVDGAYKLLVEMGNKGCAP  133 (581)
Q Consensus       101 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  133 (581)
                      .+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777665

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.88  E-value=3.1e-05  Score=43.04  Aligned_cols=33  Identities=33%  Similarity=0.561  Sum_probs=20.3

Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 008022          166 SVYNALINGLCKEHKIEEAFWLLCEMVDRGIDP  198 (581)
Q Consensus       166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  198 (581)
                      .+|+.++.++.+.|+++.|.++|+.|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            356666666666666666666666666666554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.88  E-value=0.00077  Score=55.06  Aligned_cols=88  Identities=11%  Similarity=-0.011  Sum_probs=69.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 008022           29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPT--VKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL  106 (581)
Q Consensus        29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  106 (581)
                      ....+..++..+...|++++|...|+++....+.+.  ...+..+...+.+.|+++.|...+++..+.. +.+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            445678888899999999999999999986544332  4678888899999999999999999998864 4456667777


Q ss_pred             HHHHHhcCChh
Q 008022          107 LKALCKNNRVD  117 (581)
Q Consensus       107 ~~~~~~~~~~~  117 (581)
                      ...+...|+..
T Consensus       113 g~~~~~~g~~~  123 (172)
T PRK02603        113 AVIYHKRGEKA  123 (172)
T ss_pred             HHHHHHcCChH
Confidence            77777777643

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.88  E-value=0.0051  Score=53.08  Aligned_cols=59  Identities=7%  Similarity=-0.102  Sum_probs=42.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022          485 IIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                      .++..|.+.|.+..|+.-++.+.+.++-.| .......++.+|...|..++|..+...+.
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            456677788888888888888877665555 45567777788888888888877766553

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=0.0018  Score=55.52  Aligned_cols=100  Identities=16%  Similarity=0.106  Sum_probs=69.6

Q ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCC-CHH
Q 008022          442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG---KVNNAIQLLDRIRGGGEWNP-DII  517 (581)
Q Consensus       442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p-~~~  517 (581)
                      +.|...|..|...|...|+...|..-|.+..+.. ++++..+..++.++..+.   ...++.++++++..   .+| |+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~ir  228 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIR  228 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHH
Confidence            5567777777777777777777777777777763 456666666666554432   35567777777776   445 566


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          518 SYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      +...|...+...|++.+|...|+.|++.
T Consensus       229 al~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         229 ALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            6667777777777777777777777765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.86  E-value=0.00052  Score=55.85  Aligned_cols=116  Identities=11%  Similarity=-0.011  Sum_probs=82.1

Q ss_pred             ChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCcchHHH
Q 008022           10 EIDGVQYLLQQMKVE-GVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKP--TVKIYNHILDALLAENRFSMINP   86 (581)
Q Consensus        10 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~   86 (581)
                      .+..+...+..+.+. +.......+..++..+...|++++|...|+.+......+  ...++..+...+...|++++|..
T Consensus        14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~   93 (168)
T CHL00033         14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE   93 (168)
T ss_pred             ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence            355666666666433 222345677888888899999999999999998654332  23578888899999999999999


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHH-------hcCChhHHHHHHHHH
Q 008022           87 IYSNMKRDGMEPNVFTYNILLKALC-------KNNRVDGAYKLLVEM  126 (581)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~  126 (581)
                      .++...... +.....+..+...+.       ..|+++.|...+++.
T Consensus        94 ~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033         94 YYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            999988764 444555666666666       667777555555443

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.84  E-value=0.00054  Score=63.11  Aligned_cols=124  Identities=17%  Similarity=0.153  Sum_probs=101.6

Q ss_pred             CCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhh
Q 008022          335 GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFEN--CPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITT  412 (581)
Q Consensus       335 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  412 (581)
                      +.+.+......++..+....+.+.+..++-+.....  ...-+.+..++++.|...|..+.++.+++.=...|+.||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            344567777888888888888899999988887652  223355667999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Q 008022          413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA  458 (581)
Q Consensus       413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  458 (581)
                      ++.++..+.+.|++..|.++...|...+...++.++...+.+|.+-
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999999988777677777777666666665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.83  E-value=7.9e-05  Score=49.73  Aligned_cols=55  Identities=15%  Similarity=0.172  Sum_probs=43.6

Q ss_pred             hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008022            5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFG   60 (581)
Q Consensus         5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~   60 (581)
                      +.++|++++|..+|+.+....+. +..++..++.+|.+.|++++|.++++++....
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             ChhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            35678888888888888887654 88888888888888888888888888888754

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.77  E-value=0.00013  Score=48.89  Aligned_cols=64  Identities=19%  Similarity=0.179  Sum_probs=47.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhc
Q 008022          444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG-KVNNAIQLLDRIRG  508 (581)
Q Consensus       444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~  508 (581)
                      +...|..+...+...|++++|+..|++.++.. +.+...+..++.+|...| ++++|++.++++.+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            34566777777777888888888888887764 446667777778888887 68888888877766

...

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.0056  Score=51.01  Aligned_cols=138  Identities=9%  Similarity=0.039  Sum_probs=78.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCcCHHHHHHHHH
Q 008022          414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG-----TKLDAITFNIIIY  488 (581)
Q Consensus       414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~  488 (581)
                      +.++..+.-.|.+.-....+.+.++...+.++.....++..-.+.||.+.|..+|++..+..     ...+.........
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            34455555566666666677766666555566666666666667777777777776555432     1222222333334


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 008022          489 AYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWN  555 (581)
Q Consensus       489 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  555 (581)
                      .+.-++++..|...+.++....+  .++...|.-.-++.-.|+..+|++.++.|+..  .|.+.+..
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e  323 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE  323 (366)
T ss_pred             heecccchHHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence            44555666677777766665221  14444455555555566777777777777653  44444433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=0.021  Score=51.20  Aligned_cols=256  Identities=12%  Similarity=-0.003  Sum_probs=115.8

Q ss_pred             HHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHH
Q 008022           73 DALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVE  152 (581)
Q Consensus        73 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  152 (581)
                      ..+.+..++..|+..+..+.+.. +.+...|..-...+...|++++|.--.+.-++.... .+......-+++...++..
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i  134 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLI  134 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHH
Confidence            34445555666666666666654 334445555555555566666655544443332100 1122223333333333333


Q ss_pred             HHHHHHHH---------------h-C-----CCcchHHHH-HHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 008022          153 EARELAMR---------------F-G-----SGVSVYNAL-INGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSL  210 (581)
Q Consensus       153 ~a~~~~~~---------------~-~-----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (581)
                      +|.+.++.               + +     |.-..|-.+ ..++.-.+++++|.+.--...+.... +......-..++
T Consensus       135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~  213 (486)
T KOG0550|consen  135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCL  213 (486)
T ss_pred             HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccc
Confidence            33333221               1 1     111111111 23455566666666655555444211 111111112233


Q ss_pred             HccCChhHHHHHHHHHHHcCCCCCcccHHH-------------HHHHHHccCCHHHHHHHHHHHHhCC---CCCCHHhHH
Q 008022          211 CDVGNVETSLGILGQMFVRGCNPNIHSFTS-------------LLKGYLLGGRTHEASDLWNRMIREG---FLPNVVAYS  274 (581)
Q Consensus       211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~  274 (581)
                      .-.++.+.+...|++.+..  .|+......             -..-..+.|++..|.+.|.+.+..+   ..|+...|.
T Consensus       214 yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~  291 (486)
T KOG0550|consen  214 YYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG  291 (486)
T ss_pred             ccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence            3455666666666666554  222211111             1122345566666666666665542   233444455


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008022          275 TLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISN  334 (581)
Q Consensus       275 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  334 (581)
                      ....+..+.|+..+|+.-.+...+.. +.-...+..-..++...++|++|.+-+++..+.
T Consensus       292 nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  292 NRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             HhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55555566666666666555555431 001112222233444555666666666665544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.73  E-value=0.0033  Score=60.76  Aligned_cols=141  Identities=13%  Similarity=0.123  Sum_probs=91.7

Q ss_pred             CCChhhHHHHHHHhhcC-----CChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 008022          372 PPNTVTFNTFIKGLCGC-----GRVDWAMKLLDQMKQYECLPNI-TTYNELLDGLLRV--------NRVKEAFELVTEIE  437 (581)
Q Consensus       372 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------~~~~~a~~~~~~~~  437 (581)
                      +.+...|...+++....     ++...|..+|++..+..  |+. ..+..+..++...        .+...+.+......
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            45566666665553322     23557777777777654  432 3343333333221        12233444444433


Q ss_pred             Hc-CCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH
Q 008022          438 KC-GIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDI  516 (581)
Q Consensus       438 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~  516 (581)
                      .. ..+.++..|..+.......|++++|...+++++..+  |+...|..++..+...|++++|.+.++++..   +.|..
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~---L~P~~  486 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN---LRPGE  486 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCC
Confidence            32 134456777777666777899999999999999975  5788999999999999999999999999998   55654


Q ss_pred             HhH
Q 008022          517 ISY  519 (581)
Q Consensus       517 ~~~  519 (581)
                      .+|
T Consensus       487 pt~  489 (517)
T PRK10153        487 NTL  489 (517)
T ss_pred             chH
Confidence            443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.71  E-value=0.00016  Score=47.62  Aligned_cols=57  Identities=14%  Similarity=0.214  Sum_probs=42.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +...+...|++++|.+.|+++++.. +-+...+..++.++...|++++|+..|+++.+
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3456677888888888888888765 44677777788888888888888888888776

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.71  E-value=0.00099  Score=59.09  Aligned_cols=129  Identities=9%  Similarity=0.073  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHH-hhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 008022          342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKG-LCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL  420 (581)
Q Consensus       342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  420 (581)
                      +|..+++...+.+..+.|..+|.+....+ ..+..+|...+.. +...++.+.|.++|+...+. ++.+...|...+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            34445555555555555555555554322 2233333333333 12234444455555555432 233444444555555


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCcccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022          421 LRVNRVKEAFELVTEIEKCGIQLNI---VTYNTILHGVCRAGMVVEAFQLLGKMLI  473 (581)
Q Consensus       421 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~  473 (581)
                      ...++.+.|..+|+..... ++++.   ..|...+..=.+.|+.+.+.++.+++..
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5555555555555555443 22221   2444444444455555555555555544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.71  E-value=0.0027  Score=56.65  Aligned_cols=21  Identities=19%  Similarity=0.067  Sum_probs=9.8

Q ss_pred             HHHccCCHHHHHHHHHHHHhC
Q 008022          244 GYLLGGRTHEASDLWNRMIRE  264 (581)
Q Consensus       244 ~~~~~~~~~~a~~~~~~~~~~  264 (581)
                      ++...||...|...+++....
T Consensus       205 ~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  205 CHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHHcCCHHHHHHHHHHHHhh
Confidence            334445555555555554433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.69  E-value=0.0048  Score=45.96  Aligned_cols=92  Identities=20%  Similarity=0.121  Sum_probs=47.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCccc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHh
Q 008022          417 LDGLLRVNRVKEAFELVTEIEKCGIQLN--IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK--LDAITFNIIIYAYCK  492 (581)
Q Consensus       417 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~  492 (581)
                      ..++-..|+.++|+.+|+.....|....  ...+-.+...+...|++++|..++++.......  .+......+..++..
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~   87 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN   87 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence            3445556666666666666666554332  223444555566666666666666666554211  012222223345555


Q ss_pred             cCCHHHHHHHHHHHhc
Q 008022          493 QGKVNNAIQLLDRIRG  508 (581)
Q Consensus       493 ~g~~~~A~~~~~~~~~  508 (581)
                      .|+.++|++.+-....
T Consensus        88 ~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   88 LGRPKEALEWLLEALA  103 (120)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            6666666666554443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.69  E-value=0.00022  Score=47.58  Aligned_cols=50  Identities=30%  Similarity=0.351  Sum_probs=21.3

Q ss_pred             cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          458 AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       458 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      .|++++|+++++++.... +.+...+..++.+|.+.|++++|.++++++..
T Consensus         4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444444444444432 22344444444444444444444444444443

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.61  E-value=0.00044  Score=46.87  Aligned_cols=61  Identities=21%  Similarity=0.290  Sum_probs=38.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 008022          488 YAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFAT  553 (581)
Q Consensus       488 ~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  553 (581)
                      ..|.+.+++++|+++++++..   +.| ++..|...+.++...|++++|.+.+++.++.  .|+...
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~---~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~--~p~~~~   64 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALE---LDPDDPELWLQRARCLFQLGRYEEALEDLERALEL--SPDDPD   64 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHH---hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH--CCCcHH
Confidence            456666677777777777666   344 4555666666667777777777777777653  454443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.59  E-value=0.0014  Score=46.69  Aligned_cols=76  Identities=25%  Similarity=0.304  Sum_probs=66.2

Q ss_pred             hhHhhhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008022            2 IEKLGEKCEIDGVQYLLQQMKVEGV-SCSEGVFISVINSYRRVG--------LAEQALKMFYRIREFGLKPTVKIYNHIL   72 (581)
Q Consensus         2 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~   72 (581)
                      |..+...|++...-.+|+.+.+.|+ -|+.++|..++.+..++.        ...+.+.+++.|+..+.+|+.++|+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            4566778999999999999999999 789999999999987754        3446788999999999999999999999


Q ss_pred             HHHHh
Q 008022           73 DALLA   77 (581)
Q Consensus        73 ~~~~~   77 (581)
                      ..+.+
T Consensus       112 ~~Llk  116 (120)
T PF08579_consen  112 GSLLK  116 (120)
T ss_pred             HHHHH
Confidence            88765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.58  E-value=0.0011  Score=58.78  Aligned_cols=132  Identities=14%  Similarity=0.053  Sum_probs=79.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCcCHH
Q 008022          412 TYNELLDGLLRVNRVKEAFELVTEIE----KCGIQ-LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----G-TKLDAI  481 (581)
Q Consensus       412 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~  481 (581)
                      .|..|...|.-.|+++.|+...+.-.    +.|-. .....+..+..++.-.|+++.|.+.|+.....    | -.....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            34455555555677777776555322    22211 12345666777777778888888877765532    1 122344


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHh----cCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022          482 TFNIIIYAYCKQGKVNNAIQLLDRIR----GGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       482 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                      ....|.+.|.-..++++|+.++.+-.    +.....-...++..|+.++...|..++|+.+.+..+
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            55667777777778888887776532    211112234567777888888888888887766554

>PRK15331 chaperone protein SicA; Provisional

Probab=97.56  E-value=0.01  Score=46.25  Aligned_cols=89  Identities=9%  Similarity=-0.176  Sum_probs=61.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCH
Q 008022          453 HGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGM  532 (581)
Q Consensus       453 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  532 (581)
                      ..+...|++++|..+|.-+...+ .-+..-+..|+.++-..+++++|+..|..+.....  .|+..+-..+.++...|+.
T Consensus        45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHHhCCH
Confidence            34456788888888887777654 34566677777777777888888888877765221  2444455677777888888


Q ss_pred             HHHHHHHHHHHH
Q 008022          533 QEAFIYLQKMLN  544 (581)
Q Consensus       533 ~~A~~~~~~~~~  544 (581)
                      +.|...|+..++
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            888888887776

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.11  Score=51.34  Aligned_cols=179  Identities=18%  Similarity=0.174  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 008022           32 VFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALC  111 (581)
Q Consensus        32 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  111 (581)
                      ....-+..+.+...++.|+.+-..-.. +...-..+.......+.+.|++++|...|-+....- .|     ..++.-|.
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kfL  408 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKFL  408 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHhc
Confidence            344456667777788888766543221 110112234444456678899999998887766431 22     24566667


Q ss_pred             hcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcch--HHHHHHHHHhcCChhHHHHHHH
Q 008022          112 KNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSV--YNALINGLCKEHKIEEAFWLLC  189 (581)
Q Consensus       112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~  189 (581)
                      ...+...--..++.+.+.|+. +....+.|+.+|.+.++.++..++.+..+.....  ....+..+.+.+-.++|.-+-.
T Consensus       409 daq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~  487 (933)
T KOG2114|consen  409 DAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT  487 (933)
T ss_pred             CHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence            777777778888888888876 5666678899999999999988888877643333  4566677777777777776655


Q ss_pred             HHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHH
Q 008022          190 EMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQM  226 (581)
Q Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  226 (581)
                      ....     ......   -.+-..+++++|++.+..+
T Consensus       488 k~~~-----he~vl~---ille~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  488 KFKK-----HEWVLD---ILLEDLHNYEEALRYISSL  516 (933)
T ss_pred             Hhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence            4332     222222   3344568888888888765

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.49  E-value=0.0065  Score=48.07  Aligned_cols=71  Identities=24%  Similarity=0.344  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCCCCHHhHH
Q 008022          482 TFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKML-----NEGICPNFATWN  555 (581)
Q Consensus       482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~  555 (581)
                      +...++..+...|++++|.++++++..   ..| +...|..++.+|...|+..+|+++|+++.     +.|+.|++.+-.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~---~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALA---LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH---HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            456677788889999999999999998   567 77899999999999999999999998873     358889887643

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.49  E-value=0.067  Score=47.72  Aligned_cols=282  Identities=15%  Similarity=0.106  Sum_probs=141.6

Q ss_pred             ccCChhHHHHHHHHHHHcCCCCCcccHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCHHh--HHHHHHHHHhcCChh
Q 008022          212 DVGNVETSLGILGQMFVRGCNPNIHSFTSLLKG--YLLGGRTHEASDLWNRMIREGFLPNVVA--YSTLIHGLCSNGSMD  287 (581)
Q Consensus       212 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~  287 (581)
                      ..|+-..|.++-.+..+. +..|......++.+  -.-.|+++.|.+-|+.|...   |....  +..|.-...+.|+.+
T Consensus        96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare  171 (531)
T COG3898          96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE  171 (531)
T ss_pred             ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence            355666666665544322 12343334444332  33467777777777777652   22211  222222234556666


Q ss_pred             hHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhh--HHHHHHHHH--c-cCChhHHHH
Q 008022          288 EAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNG-CSPNVVA--YTCMVKVLC--Q-NNMFHQAHS  361 (581)
Q Consensus       288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~--~-~~~~~~a~~  361 (581)
                      .|..+-+..-..- +.-...+...+...+..|+++.|+++++.-.... +.++..-  -..|+.+-.  . ..+...|..
T Consensus       172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~  250 (531)
T COG3898         172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD  250 (531)
T ss_pred             HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence            6666665554432 3344566667777777777777777776554432 2233221  122222211  1 124445555


Q ss_pred             HHHHHhhCCCCCChh-hHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 008022          362 LIEKMAFENCPPNTV-TFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC-  439 (581)
Q Consensus       362 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-  439 (581)
                      .-.+..+.  .|+.. .--.-..++.+.|+..++-.+++.+-+..  |....+  .+..+.+.|+  .+..-++...+. 
T Consensus       251 ~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia--~lY~~ar~gd--ta~dRlkRa~~L~  322 (531)
T COG3898         251 DALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIA--LLYVRARSGD--TALDRLKRAKKLE  322 (531)
T ss_pred             HHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHH--HHHHHhcCCC--cHHHHHHHHHHHH
Confidence            54444433  23322 22233456667777777777777776554  332222  1222334443  233333322211 


Q ss_pred             CC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhc
Q 008022          440 GI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK-QGKVNNAIQLLDRIRG  508 (581)
Q Consensus       440 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~  508 (581)
                      .. +.+..+...+..+-...|++..|..--+....  ..|....|..+.+.-.. .||-.++..++.+...
T Consensus       323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            01 23444555556666667777777666655554  35566666666655433 4777777777777766

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.48  E-value=0.0002  Score=38.60  Aligned_cols=29  Identities=34%  Similarity=0.684  Sum_probs=22.1

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 008022          518 SYTSLLWGICNSGGMQEAFIYLQKMLNEG  546 (581)
Q Consensus       518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (581)
                      +|+.++.+|.+.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            57777777777777777777777777665

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.48  E-value=0.022  Score=47.89  Aligned_cols=51  Identities=24%  Similarity=0.132  Sum_probs=30.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHH
Q 008022          485 IIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEA  535 (581)
Q Consensus       485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A  535 (581)
                      .++..|.+.|.+..|..-++.+.+.++-.| ...+...++.+|.+.|..+.|
T Consensus       146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            356667777777777777777776543333 233556666777777766533

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.47  E-value=0.027  Score=53.45  Aligned_cols=99  Identities=14%  Similarity=0.180  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChh
Q 008022          103 YNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIE  182 (581)
Q Consensus       103 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~  182 (581)
                      +..-+..+...|.+++|.++--      +-....-|..|.......-+++-|++.+.+.               +.-.+-
T Consensus       559 ~~~~m~q~Ieag~f~ea~~iac------lgVv~~DW~~LA~~ALeAL~f~~ARkAY~rV---------------Rdl~~L  617 (1081)
T KOG1538|consen  559 QSAPMYQYIERGLFKEAYQIAC------LGVTDTDWRELAMEALEALDFETARKAYIRV---------------RDLRYL  617 (1081)
T ss_pred             ccccchhhhhccchhhhhcccc------cceecchHHHHHHHHHhhhhhHHHHHHHHHH---------------hccHHH
Confidence            3333444556666666654311      1122334555554444444445444432221               222344


Q ss_pred             HHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHH
Q 008022          183 EAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQ  225 (581)
Q Consensus       183 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  225 (581)
                      +.+.-+++++++|-.|+...   +...++-.|.+.+|.++|.+
T Consensus       618 ~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  618 ELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             HHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence            55566778888887777643   44566778888888888764

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.46  E-value=0.00022  Score=38.51  Aligned_cols=29  Identities=48%  Similarity=0.802  Sum_probs=19.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 008022          167 VYNALINGLCKEHKIEEAFWLLCEMVDRG  195 (581)
Q Consensus       167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  195 (581)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            46666666666666666666666666654

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.42  E-value=0.083  Score=48.07  Aligned_cols=31  Identities=19%  Similarity=0.173  Sum_probs=22.4

Q ss_pred             CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          515 DIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      +.-.+.+++.++.-.|++++|.+.+++|.+.
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            3334567777777788888888888888764

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.41  E-value=0.00091  Score=45.31  Aligned_cols=59  Identities=12%  Similarity=0.089  Sum_probs=46.7

Q ss_pred             hhHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008022            2 IEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGL   61 (581)
Q Consensus         2 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~   61 (581)
                      -..+.++++++.|...++.++..++. ++..+...+..+...|++++|.+.|+.+.+.++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            45677888888888888888887654 777888888888888888888888888887554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.41  E-value=0.0033  Score=53.23  Aligned_cols=98  Identities=18%  Similarity=0.194  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGT--KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      .|+.-+. +.+.|++..|..-|...++..+  .-....+..|+.++...|++++|...|..+.+.++-.| -+.++..|+
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            4555443 4567788888888888887632  22345677788888888888888888888887676666 457888888


Q ss_pred             HHHHccCCHHHHHHHHHHHHHc
Q 008022          524 WGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       524 ~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      .+..+.|+.++|..+|++..+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            8888888888888888888775

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.41  E-value=0.0077  Score=50.64  Aligned_cols=66  Identities=11%  Similarity=0.051  Sum_probs=37.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 008022           29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLK--PTVKIYNHILDALLAENRFSMINPIYSNMKRD   94 (581)
Q Consensus        29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   94 (581)
                      +...+...+..+...|++.+|.+.|+.+....+.  -.....-.++.++.+.|+++.|...+++..+.
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3445555666666777777777777777653221  22334455556666666777766666666654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.37  E-value=0.0059  Score=53.15  Aligned_cols=98  Identities=10%  Similarity=-0.036  Sum_probs=71.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHH
Q 008022          412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN---IVTYNTILHGVCRAGMVVEAFQLLGKMLIEG--TKLDAITFNII  486 (581)
Q Consensus       412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l  486 (581)
                      .|......+.+.|++++|+..|+.+.+.. |-+   +..+..+...|...|++++|...|+.+.+..  .+.....+..+
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            45554444456788888888888888763 222   3466677888888899999999998888652  12235566677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhcCC
Q 008022          487 IYAYCKQGKVNNAIQLLDRIRGGG  510 (581)
Q Consensus       487 ~~~~~~~g~~~~A~~~~~~~~~~~  510 (581)
                      +.++...|++++|..+++++.+.+
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC
Confidence            788888899999999999888733

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.36  E-value=0.11  Score=47.33  Aligned_cols=83  Identities=8%  Similarity=0.175  Sum_probs=66.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 008022           27 SCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL  106 (581)
Q Consensus        27 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  106 (581)
                      |.+...|..++.-+-.+|.+++.+++++++.. .++--+.+|..-+.+-...+++.....+|.+.+..  ..+...|...
T Consensus        39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k--~l~ldLW~lY  115 (660)
T COG5107          39 PTNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK--SLNLDLWMLY  115 (660)
T ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh--hccHhHHHHH
Confidence            45889999999999999999999999999986 22234567888888888889999999999999876  3456667666


Q ss_pred             HHHHHh
Q 008022          107 LKALCK  112 (581)
Q Consensus       107 ~~~~~~  112 (581)
                      +.--.+
T Consensus       116 l~YIRr  121 (660)
T COG5107         116 LEYIRR  121 (660)
T ss_pred             HHHHHh
Confidence            654433

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.34  E-value=0.12  Score=47.14  Aligned_cols=146  Identities=13%  Similarity=0.145  Sum_probs=99.1

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHH
Q 008022          410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCG-IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAIT-FNIII  487 (581)
Q Consensus       410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~  487 (581)
                      ...|...+....+....+.|..+|-++.+.+ +.++...+++++..+ ..|++..|..+|+--+..  -||... -+..+
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl  473 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYL  473 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence            3456666777777777888888888888877 556677777777654 457788888888877765  234333 34556


Q ss_pred             HHHHhcCCHHHHHHHHHHHhcCCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008022          488 YAYCKQGKVNNAIQLLDRIRGGGEWNPD--IISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLF  562 (581)
Q Consensus       488 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  562 (581)
                      ..+...++-+.|..+|++..++.  ..+  ...|..++.--..-|+...+..+=+++.+  ..|...+.......+.
T Consensus       474 ~fLi~inde~naraLFetsv~r~--~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~  546 (660)
T COG5107         474 LFLIRINDEENARALFETSVERL--EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA  546 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHH--HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence            66777888888888888665421  222  45677777777778888888888777766  3566555544444443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.31  E-value=0.00093  Score=45.97  Aligned_cols=64  Identities=22%  Similarity=0.263  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CC-CCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGG---GE-WNPD-IISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      .+++.++..|...|++++|++.++++.+.   .| -.|+ ..++..++.++...|++++|++++++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34556666666666666666666665431   11 1121 33556666666666777777666666543

...

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.30  E-value=0.13  Score=46.96  Aligned_cols=226  Identities=12%  Similarity=0.154  Sum_probs=127.4

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhCCCC----CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-----
Q 008022          274 STLIHGLCSNGSMDEAVSVSYQMEENSCP----PNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYT-----  344 (581)
Q Consensus       274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----  344 (581)
                      ..+...+..  +.+++..+.+.+....+.    .-..++..++....+.++...|.+.+.-+...  +|+...-.     
T Consensus       265 ~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls  340 (549)
T PF07079_consen  265 EPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLS  340 (549)
T ss_pred             HHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcC
Confidence            334444433  455555554444332111    12456777888888888888888888877664  33332111     


Q ss_pred             --HHHHHHHcc-C---ChhHHHHHHHHHhhCCCCCCh-hhHHHH---HHHhhcCCC-hHHHHHHHHHHhhCCCCCChhhH
Q 008022          345 --CMVKVLCQN-N---MFHQAHSLIEKMAFENCPPNT-VTFNTF---IKGLCGCGR-VDWAMKLLDQMKQYECLPNITTY  413 (581)
Q Consensus       345 --~l~~~~~~~-~---~~~~a~~~~~~~~~~~~~~~~-~~~~~l---~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~  413 (581)
                        .+....+.. .   +...=+.+++.....++  |. .....+   +.-+-+.|. -++|+++++.+.+.. .-|...-
T Consensus       341 ~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~  417 (549)
T PF07079_consen  341 PKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECE  417 (549)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHH
Confidence              122222211 1   12223334444443321  21 111112   222334444 788999999887753 2344333


Q ss_pred             HHHH----HHHHh---cCCHHHHHHHHHHHHHcCCcccHH----HHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022          414 NELL----DGLLR---VNRVKEAFELVTEIEKCGIQLNIV----TYNTILHG--VCRAGMVVEAFQLLGKMLIEGTKLDA  480 (581)
Q Consensus       414 ~~l~----~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~  480 (581)
                      |.+.    ..|.+   ...+.+-+.+-.-+.+.|++|-..    .-|.+.++  +...|++.++.-.-..+.+  +.|++
T Consensus       418 n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~  495 (549)
T PF07079_consen  418 NIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSP  495 (549)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcH
Confidence            3322    22322   233444444445556677776433    34444433  4578999999877766666  68899


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      .+|..++-++....++++|..++..+..
T Consensus       496 ~~~RLlGl~l~e~k~Y~eA~~~l~~LP~  523 (549)
T PF07079_consen  496 QAYRLLGLCLMENKRYQEAWEYLQKLPP  523 (549)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence            9999999999999999999999987653

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.027  Score=48.33  Aligned_cols=142  Identities=14%  Similarity=0.084  Sum_probs=72.8

Q ss_pred             hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 008022            5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMI   84 (581)
Q Consensus         5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a   84 (581)
                      +...|++.+|..+|.......+. +..+...++.+|...|+.+.|..++..+...-..........-+..+.+.....+.
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~  222 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI  222 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence            44556666666666666665443 45566666666666666666666666554322111111222234445555555555


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCcchHHHHHHHHHccC
Q 008022           85 NPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKG-CAPDAVSYTTIVSSICKLG  149 (581)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g  149 (581)
                      ..+-+.+...  +.|...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+...|
T Consensus       223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            5555554433  3355555555566666666666655555444331 1113344445555544444

>PRK15331 chaperone protein SicA; Provisional

Probab=97.24  E-value=0.012  Score=45.93  Aligned_cols=90  Identities=12%  Similarity=-0.096  Sum_probs=70.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 008022          417 LDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKV  496 (581)
Q Consensus       417 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  496 (581)
                      ..-+...|++++|..+|+-+...+ +-+..-+..|..++-..+++++|...|......+ ..|+......+.+|...|+.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence            344557889999999998877654 4466667778888888889999999988877664 34555567788889999999


Q ss_pred             HHHHHHHHHHhc
Q 008022          497 NNAIQLLDRIRG  508 (581)
Q Consensus       497 ~~A~~~~~~~~~  508 (581)
                      +.|...|..+..
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988887

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.21  E-value=0.11  Score=49.69  Aligned_cols=79  Identities=19%  Similarity=0.050  Sum_probs=44.7

Q ss_pred             CcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHH
Q 008022          199 NVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIH  278 (581)
Q Consensus       199 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  278 (581)
                      +..+...+...+.+...+..|-++|.++-..         .+++......++|++|..+-++..+.  .|+.  |....+
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dV--y~pyaq  812 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDV--YMPYAQ  812 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccc--cchHHH
Confidence            3344555555555666677777777766432         35566677788888888777665543  2332  223333


Q ss_pred             HHHhcCChhhHH
Q 008022          279 GLCSNGSMDEAV  290 (581)
Q Consensus       279 ~~~~~~~~~~a~  290 (581)
                      -++...++++|.
T Consensus       813 wLAE~DrFeEAq  824 (1081)
T KOG1538|consen  813 WLAENDRFEEAQ  824 (1081)
T ss_pred             HhhhhhhHHHHH
Confidence            444444444443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.19  E-value=0.0052  Score=54.70  Aligned_cols=134  Identities=10%  Similarity=0.032  Sum_probs=82.5

Q ss_pred             cccHHHHHHHHHccCChhHHHHHHHHHH----HcCCC-CCcccHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCC
Q 008022          200 VITYSTIISSLCDVGNVETSLGILGQMF----VRGCN-PNIHSFTSLLKGYLLGGRTHEASDLWNRMIRE----GF-LPN  269 (581)
Q Consensus       200 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~  269 (581)
                      ...|..|.+.|.-.|+++.|....+.-.    +.|.. ....++..+..++.-.|+++.|.+.|+.....    |- ...
T Consensus       195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE  274 (639)
T KOG1130|consen  195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE  274 (639)
T ss_pred             cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence            3556677777777888888877655432    22211 12345566777777888888888887764332    21 123


Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhC----C-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008022          270 VVAYSTLIHGLCSNGSMDEAVSVSYQMEEN----S-CPPNVTTYSALIDGFAKAGNLLGASQIWNRMIS  333 (581)
Q Consensus       270 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  333 (581)
                      ......|...|.-..++++|+.++.+-...    + ..-....+-.+..+|...|..+.|..+.+.-.+
T Consensus       275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            344556777777777788887776653321    1 112345566777777778888887776665443

>PRK11906 transcriptional regulator; Provisional

Probab=97.17  E-value=0.043  Score=50.70  Aligned_cols=78  Identities=13%  Similarity=0.030  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          429 AFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       429 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      |.++-+...+.+ +.|+.....+..+..-.++++.|...|++....+ +....+|...+..+.-.|+.++|.+.+++..+
T Consensus       323 a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        323 ALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            333444444433 3344444444444444444445555555444432 22333344444444444555555555554444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.14  E-value=0.12  Score=43.45  Aligned_cols=139  Identities=14%  Similarity=0.111  Sum_probs=91.6

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHH-----H
Q 008022          378 FNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTI-----L  452 (581)
Q Consensus       378 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~  452 (581)
                      .+.++......+.+.-....+++..+...+.++.....+++.-.+.|+.+.|...|++..+..-..+....+.+     .
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            34555566666777777777777777665566667777777777788888887777766543223333333332     2


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHH
Q 008022          453 HGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYT  520 (581)
Q Consensus       453 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~  520 (581)
                      ..+.-++++..|...+.+....+ +.++...|.-+-+..-.|+..+|++.++.+.+   ..|.+.+-+
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~---~~P~~~l~e  323 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ---QDPRHYLHE  323 (366)
T ss_pred             hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc---cCCccchhh
Confidence            33455678888888888887664 34555566666666667888899999888887   456554444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.14  E-value=0.0071  Score=54.12  Aligned_cols=126  Identities=11%  Similarity=-0.030  Sum_probs=81.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc-----CCcc---------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022          415 ELLDGLLRVNRVKEAFELVTEIEKC-----GIQL---------NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA  480 (581)
Q Consensus       415 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  480 (581)
                      .-...|.+.|++..|...|+.+...     +.++         -..+++.+..++.+.+++..|++..++.+..+ ++|.
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~  291 (397)
T KOG0543|consen  213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV  291 (397)
T ss_pred             HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence            3466778888888888888876532     1111         12356666677777788888888888877775 5677


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH-hHHHHHHHHHccCCHH-HHHHHHHHHHH
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDII-SYTSLLWGICNSGGMQ-EAFIYLQKMLN  544 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~-~A~~~~~~~~~  544 (581)
                      ..+..-+.+|...|+++.|+..|+++.+   +.|+.. +-+.++..--+..... ...++|..|..
T Consensus       292 KALyRrG~A~l~~~e~~~A~~df~ka~k---~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  292 KALYRRGQALLALGEYDLARDDFQKALK---LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             hHHHHHHHHHHhhccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7777777788888888888888888877   566433 3333433333333332 33556666644

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.13  E-value=0.26  Score=46.99  Aligned_cols=185  Identities=11%  Similarity=0.012  Sum_probs=105.9

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022          304 NVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIK  383 (581)
Q Consensus       304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  383 (581)
                      +..+|...+.--...|+.+.+.-+|++..-. +..=...|-..+.-....|+.+-|..++....+-..+..+.+.-.-..
T Consensus       296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~  374 (577)
T KOG1258|consen  296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR  374 (577)
T ss_pred             HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence            4556777777777788888888888776531 011122344445555555777777777766655443333333222233


Q ss_pred             HhhcCCChHHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhcCCHHHHH---HHHHHHHHcCCcccHHHHHHHHHH-----
Q 008022          384 GLCGCGRVDWAMKLLDQMKQYECLPNIT-TYNELLDGLLRVNRVKEAF---ELVTEIEKCGIQLNIVTYNTILHG-----  454 (581)
Q Consensus       384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~l~~~-----  454 (581)
                      ..-..|+++.|..+++.+.+.-  |+.. .-..-+....+.|+.+.+.   +++..... | .-+......+.--     
T Consensus       375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~  450 (577)
T KOG1258|consen  375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLR  450 (577)
T ss_pred             HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHH
Confidence            3445678889999988887653  4433 2222344455677777776   33333322 1 1222222222222     


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008022          455 VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG  494 (581)
Q Consensus       455 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  494 (581)
                      +.-.++.+.|..++.++... .+++...|..++......+
T Consensus       451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence            23357888888888888876 3667777777776665544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.013  Score=52.58  Aligned_cols=126  Identities=13%  Similarity=0.024  Sum_probs=84.6

Q ss_pred             HHHHhhcCCChHHHHHHHHHHhhC-----CCC---------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHH
Q 008022          381 FIKGLCGCGRVDWAMKLLDQMKQY-----ECL---------PNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIV  446 (581)
Q Consensus       381 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  446 (581)
                      -...+.+.|++..|..-|++....     ...         .-...+..+.-++.+.+++.+|+..-...+..+ ++|..
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K  292 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK  292 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence            346777888888888888775431     111         112345667777888888888888888888775 66777


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhc
Q 008022          447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVN-NAIQLLDRIRG  508 (581)
Q Consensus       447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~  508 (581)
                      .+-.-..++...|+++.|+..|+++++.. +.|..+-+.++.+-.+...+. +..++|..|..
T Consensus       293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  293 ALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            77777788888888888888888888753 334444555555444444333 34677777766

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.11  E-value=0.014  Score=44.32  Aligned_cols=75  Identities=23%  Similarity=0.278  Sum_probs=50.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHH
Q 008022          452 LHGVCRAGMVVEAFQLLGKMLIEGT--KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGIC  527 (581)
Q Consensus       452 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~  527 (581)
                      .....+.|++++|.+.|+.+...-+  +-....-..++.+|.+.|++++|+..++++++.++-.|++ -|.....++.
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~   93 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLS   93 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHH
Confidence            3445677888888888888877621  2244566778888888888888888888888855555543 2333444433

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.32  Score=47.58  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=78.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022          411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY  490 (581)
Q Consensus       411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  490 (581)
                      -+.+--+.-+...|+..+|.++-.+.+    -||...|..=+.+++..+++++-+++-+...      ++.-|.....+|
T Consensus       685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c  754 (829)
T KOG2280|consen  685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC  754 (829)
T ss_pred             CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence            345555666777788888888777765    5677777777788888888887666654432      244577788888


Q ss_pred             HhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHH
Q 008022          491 CKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQ  540 (581)
Q Consensus       491 ~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  540 (581)
                      .+.|+.++|.+++-++..   . +      ....+|.+.|++.+|.+.--
T Consensus       755 ~~~~n~~EA~KYiprv~~---l-~------ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  755 LKQGNKDEAKKYIPRVGG---L-Q------EKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             HhcccHHHHhhhhhccCC---h-H------HHHHHHHHhccHHHHHHHHH
Confidence            999999999888876655   1 1      45667888888888876543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.057  Score=46.46  Aligned_cols=144  Identities=15%  Similarity=0.152  Sum_probs=87.8

Q ss_pred             HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCH
Q 008022           72 LDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQV  151 (581)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  151 (581)
                      .......|++..|..+|....... +-+...-..++.++...|+++.|..++..+...--.........-+..+.+....
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~  219 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT  219 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence            445667788888888888877764 3445566677788888888888888888776542221222222233444444333


Q ss_pred             ---HHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCcccHHHHHHHHHccCChh
Q 008022          152 ---EEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDR--GIDPNVITYSTIISSLCDVGNVE  217 (581)
Q Consensus       152 ---~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~  217 (581)
                         ....+-+..-|.|...-..+...+...|+.++|++.+-.+.++  |.. |...-..++..+.-.|..+
T Consensus       220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D  289 (304)
T COG3118         220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD  289 (304)
T ss_pred             CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence               3333333333667777777888888888888888776666554  222 4444555666665555433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.06  E-value=0.0094  Score=50.57  Aligned_cols=90  Identities=16%  Similarity=0.077  Sum_probs=49.7

Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCC
Q 008022           40 YRRVGLAEQALKMFYRIREFGLK--PTVKIYNHILDALLAENRFSMINPIYSNMKRDG--MEPNVFTYNILLKALCKNNR  115 (581)
Q Consensus        40 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~  115 (581)
                      +...|++..|.+.|...++..+.  -.+..+-.+..++...|+++.|...|..+.+..  .+.-+.....+..+..+.|+
T Consensus       151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~  230 (262)
T COG1729         151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN  230 (262)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence            34455566666666666653322  223445556666666666666666666665542  11123445555555666666


Q ss_pred             hhHHHHHHHHHhhC
Q 008022          116 VDGAYKLLVEMGNK  129 (581)
Q Consensus       116 ~~~a~~~~~~~~~~  129 (581)
                      .++|...|+++.+.
T Consensus       231 ~d~A~atl~qv~k~  244 (262)
T COG1729         231 TDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666666666655

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.06  E-value=0.0074  Score=55.40  Aligned_cols=65  Identities=9%  Similarity=-0.032  Sum_probs=53.9

Q ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD-A---ITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +.+...++.+..+|...|++++|+..|++.++.+  |+ .   .+|..++.+|...|++++|++.++++.+
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5567788888888999999999999999988864  44 2   3588889999999999999999999888

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.03  E-value=0.017  Score=47.12  Aligned_cols=71  Identities=20%  Similarity=0.243  Sum_probs=36.7

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----------------CChhhHHHHHHHHHhCCCCCcHHhHHHH
Q 008022          248 GGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSN----------------GSMDEAVSVSYQMEENSCPPNVTTYSAL  311 (581)
Q Consensus       248 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l  311 (581)
                      .|..+=....+..|.+-|+..|..+|+.|++.+-+.                .+-+-|++++++|...|+-||..++..+
T Consensus        65 RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~l  144 (228)
T PF06239_consen   65 RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQML  144 (228)
T ss_pred             cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            345555555566666666666666666666655431                1123344444555555544555555554


Q ss_pred             HHHHHhc
Q 008022          312 IDGFAKA  318 (581)
Q Consensus       312 ~~~~~~~  318 (581)
                      +..+.+.
T Consensus       145 l~iFG~~  151 (228)
T PF06239_consen  145 LNIFGRK  151 (228)
T ss_pred             HHHhccc
Confidence            4444433

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.03  E-value=0.043  Score=41.82  Aligned_cols=76  Identities=8%  Similarity=0.048  Sum_probs=51.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC--cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008022          416 LLDGLLRVNRVKEAFELVTEIEKCGI--QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYC  491 (581)
Q Consensus       416 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  491 (581)
                      -.....+.|++++|.+.|+.+..+-.  +-....-..++.+|.+.+++++|...+++.++..+.-...-|.....+++
T Consensus        16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            34455678999999999999887621  22345566788889999999999999999998753222223444444444

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.02  E-value=0.0026  Score=43.76  Aligned_cols=63  Identities=24%  Similarity=0.260  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIE----GT-KLD-AITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      .+++.+...|...|++++|+..+++.++.    |. .|+ ..++..++.+|...|++++|++.++++.+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45666777777777777777777777643    11 111 34567777777777888888777777654

...

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.99  E-value=0.35  Score=46.13  Aligned_cols=98  Identities=9%  Similarity=-0.054  Sum_probs=39.7

Q ss_pred             hhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q 008022          376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGV  455 (581)
Q Consensus       376 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  455 (581)
                      ..|..-+......|+++.+.-.|++..--- ..=...|-..+......|+.+-|..++....+--.+..+.+...-....
T Consensus       298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~  376 (577)
T KOG1258|consen  298 KNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE  376 (577)
T ss_pred             HHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence            344444444555555555555555543200 0111223333333333355555555444443332222222211111122


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 008022          456 CRAGMVVEAFQLLGKMLIE  474 (581)
Q Consensus       456 ~~~~~~~~a~~~~~~~~~~  474 (581)
                      ...|++..|..+++.+...
T Consensus       377 e~~~n~~~A~~~lq~i~~e  395 (577)
T KOG1258|consen  377 ESNGNFDDAKVILQRIESE  395 (577)
T ss_pred             HhhccHHHHHHHHHHHHhh
Confidence            2345555555555555544

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.98  E-value=0.26  Score=44.93  Aligned_cols=31  Identities=13%  Similarity=0.196  Sum_probs=23.7

Q ss_pred             CcccHHHHHHHHHccCChhHHHHHHHHHHHc
Q 008022          199 NVITYSTIISSLCDVGNVETSLGILGQMFVR  229 (581)
Q Consensus       199 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  229 (581)
                      +-..+.+++.+..-.|+.+.|.+..+++...
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            4445567778888888888888888888766

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=0.063  Score=46.80  Aligned_cols=155  Identities=9%  Similarity=0.014  Sum_probs=109.1

Q ss_pred             hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHH----HHHHHHHHHhcCCH
Q 008022          386 CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVT----YNTILHGVCRAGMV  461 (581)
Q Consensus       386 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~  461 (581)
                      -..|+..+|-..++++.+. .+.|...+...-.++.-.|+.+.-...++++... +.++..+    ...+.-++...|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence            3457777777788888764 3667777888888888889888888888888754 3444433    33444556678999


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHH
Q 008022          462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYL  539 (581)
Q Consensus       462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~  539 (581)
                      ++|++.-++..+.+ +.|...-..+...+--.|++.++.++..+-...-....  -...|-...-.+...+.++.|+++|
T Consensus       192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            99999999988876 55777777788888888999999998887665221100  1223444455566778999999998


Q ss_pred             HHHH
Q 008022          540 QKML  543 (581)
Q Consensus       540 ~~~~  543 (581)
                      ++=+
T Consensus       271 D~ei  274 (491)
T KOG2610|consen  271 DREI  274 (491)
T ss_pred             HHHH
Confidence            7643

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.065  Score=44.47  Aligned_cols=55  Identities=13%  Similarity=0.179  Sum_probs=27.7

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHhcCChhhHHHHH
Q 008022          238 FTSLLKGYLLGGRTHEASDLWNRMIREG---FLPNVVAYSTLIHGLCSNGSMDEAVSVS  293 (581)
Q Consensus       238 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~  293 (581)
                      +...+-.+....++..|...++...+.+   -..+..+...|+.+| ..|+.+++.+++
T Consensus       193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            4444445555566666666666543331   112344555566554 345555555443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.88  E-value=0.035  Score=45.44  Aligned_cols=36  Identities=19%  Similarity=0.217  Sum_probs=29.1

Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK  495 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  495 (581)
                      +-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus       118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            346688888888888888888888888888876654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.87  E-value=0.07  Score=51.39  Aligned_cols=84  Identities=21%  Similarity=0.190  Sum_probs=42.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHH
Q 008022          459 GMVVEAFQLLGKMLIEGTKLDAITF-NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEA  535 (581)
Q Consensus       459 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A  535 (581)
                      .+.+.|.++++.+...  -|+...| ..-++.+...|++++|++.++++......-|  ....+..+++.+.-.++|++|
T Consensus       247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            3455566666666554  2333333 2233455556666666666665443111111  223444556666666666666


Q ss_pred             HHHHHHHHH
Q 008022          536 FIYLQKMLN  544 (581)
Q Consensus       536 ~~~~~~~~~  544 (581)
                      ...|.++.+
T Consensus       325 ~~~f~~L~~  333 (468)
T PF10300_consen  325 AEYFLRLLK  333 (468)
T ss_pred             HHHHHHHHh
Confidence            666666655

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.84  E-value=0.018  Score=45.50  Aligned_cols=57  Identities=18%  Similarity=0.300  Sum_probs=29.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          415 ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKML  472 (581)
Q Consensus       415 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  472 (581)
                      .++..+...|++++|..+.+.+.... |.+...+..++.++...|+...|.+.|+++.
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            34444555555666666555555543 4455555555566666666655555555553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.83  E-value=0.62  Score=46.39  Aligned_cols=173  Identities=16%  Similarity=0.186  Sum_probs=111.4

Q ss_pred             hHhhhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 008022            3 EKLGEKCEIDGVQYLLQQMKVEGVS--CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR   80 (581)
Q Consensus         3 ~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (581)
                      +.+.+..-++-|..+-..   .+.+  .-.......+.-+.+.|++++|...|-+.+.  ....    ..++.-+....+
T Consensus       342 ~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~----s~Vi~kfLdaq~  412 (933)
T KOG2114|consen  342 DILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEP----SEVIKKFLDAQR  412 (933)
T ss_pred             HHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCCh----HHHHHHhcCHHH
Confidence            334445555555544332   2211  1223444455556789999999988866654  2122    234555555666


Q ss_pred             cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHH
Q 008022           81 FSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMR  160 (581)
Q Consensus        81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  160 (581)
                      ...-..+++.+.+.|. .+...-..|+.+|.+.++.+.-.+..+... .|.-  ..-....+..+.+.+-.++|.-+..+
T Consensus       413 IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k  488 (933)
T KOG2114|consen  413 IKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATK  488 (933)
T ss_pred             HHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHH
Confidence            6667778888888884 566667789999999999988877776554 2211  12245667777778888888888777


Q ss_pred             hCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 008022          161 FGSGVSVYNALINGLCKEHKIEEAFWLLCEM  191 (581)
Q Consensus       161 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  191 (581)
                      ...+......+++   ..+++++|++.+..+
T Consensus       489 ~~~he~vl~ille---~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  489 FKKHEWVLDILLE---DLHNYEEALRYISSL  516 (933)
T ss_pred             hccCHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence            7666655555554   468899999888765

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.72  E-value=0.18  Score=46.94  Aligned_cols=56  Identities=16%  Similarity=0.118  Sum_probs=26.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022          451 ILHGVCRAGMVVEAFQLLGKMLIEGTK-LDAITFNIIIYAYCKQGKVNNAIQLLDRI  506 (581)
Q Consensus       451 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  506 (581)
                      +..++.+.|+.++|++.+.++++.... .+..+...|+.++...+.+.++..++.+-
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            334444555555555555555543211 12234445555555555555555555554

The molecular function of this protein is uncertain.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.67  E-value=0.037  Score=41.74  Aligned_cols=79  Identities=13%  Similarity=0.063  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH---------------HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKML---------------IEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG  510 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  510 (581)
                      .++..++.++++.|+.+....+++..-               .....|+..++.+++.+|+..|++..|.++++.+.+.+
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y   82 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY   82 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence            344445555555555555544444332               11234556666666666666666666666666666656


Q ss_pred             CCCCCHHhHHHHHH
Q 008022          511 EWNPDIISYTSLLW  524 (581)
Q Consensus       511 ~~~p~~~~~~~l~~  524 (581)
                      +++-+...|..|+.
T Consensus        83 ~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   83 PIPIPKEFWRRLLE   96 (126)
T ss_pred             CCCCCHHHHHHHHH
Confidence            55445555555544

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.76  Score=45.16  Aligned_cols=104  Identities=18%  Similarity=0.235  Sum_probs=51.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCC
Q 008022          310 ALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCG  389 (581)
Q Consensus       310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  389 (581)
                      .-+.-+...|+..+|.++-.+..    -||-..|-.-+.++...++|++-+++-+...      ++.-|.....+|.+.|
T Consensus       689 dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~  758 (829)
T KOG2280|consen  689 DTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQG  758 (829)
T ss_pred             HHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcc
Confidence            33344445555555555554443    2455555555555556566555444433321      2444555555566666


Q ss_pred             ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008022          390 RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFEL  432 (581)
Q Consensus       390 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  432 (581)
                      +.++|.+++.+....         .-...+|.+.|++.+|.++
T Consensus       759 n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~  792 (829)
T KOG2280|consen  759 NKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADL  792 (829)
T ss_pred             cHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHH
Confidence            666665555433211         1334455555555555443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.65  E-value=0.067  Score=40.41  Aligned_cols=87  Identities=14%  Similarity=0.166  Sum_probs=71.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHh--------------cCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHH-
Q 008022          479 DAITFNIIIYAYCKQGKVNNAIQLLDRIR--------------GGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKML-  543 (581)
Q Consensus       479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-  543 (581)
                      |..++..++.++++.|+.+....++++.-              ...++.|+.....+++.+|+..|++..|+++++... 
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            45678899999999999999999998652              223566888999999999999999999999999985 


Q ss_pred             HcCCCCCHHhHHHHHHHHHhcc
Q 008022          544 NEGICPNFATWNVLVRSLFSNL  565 (581)
Q Consensus       544 ~~~~~~~~~~~~~l~~~~~~~g  565 (581)
                      ..+++-+..+|..|+.-....-
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~~v~s  102 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWAYVLS  102 (126)
T ss_pred             HcCCCCCHHHHHHHHHHHHHhc
Confidence            4577777889999888554433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.62  E-value=0.21  Score=48.23  Aligned_cols=115  Identities=18%  Similarity=0.132  Sum_probs=64.3

Q ss_pred             CCHHHHHHHHHHHHHcCCcccHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCCHHHH
Q 008022          424 NRVKEAFELVTEIEKCGIQLNIVTYNT-ILHGVCRAGMVVEAFQLLGKMLIEG---TKLDAITFNIIIYAYCKQGKVNNA  499 (581)
Q Consensus       424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A  499 (581)
                      .+.+.|.++++.+.+.  -|+...|.. -.+.+...|++++|++.+++.....   .+.....+..++.++.-.++|++|
T Consensus       247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            4556677777777665  344444332 2334455677777777777655321   012333455566667777777777


Q ss_pred             HHHHHHHhcCCCCCCCHHhHHHHHH-HHHccCCH-------HHHHHHHHHH
Q 008022          500 IQLLDRIRGGGEWNPDIISYTSLLW-GICNSGGM-------QEAFIYLQKM  542 (581)
Q Consensus       500 ~~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~-------~~A~~~~~~~  542 (581)
                      .+.|.++.+....  +...|..+.. ++...|+.       ++|.++|.+.
T Consensus       325 ~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  325 AEYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            7777777763322  3333433333 23445555       6666666665

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.51  E-value=0.1  Score=38.51  Aligned_cols=53  Identities=23%  Similarity=0.242  Sum_probs=26.1

Q ss_pred             hhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008022            5 LGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIRE   58 (581)
Q Consensus         5 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~   58 (581)
                      ++..|+++.|++.|.+.+..-+. ...+|+.-.+++.-+|+.++|+.=+++...
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            34445555555555555443222 444555555555555555555555554443

>PRK11906 transcriptional regulator; Provisional

Probab=96.50  E-value=0.32  Score=45.21  Aligned_cols=108  Identities=15%  Similarity=0.088  Sum_probs=60.0

Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHH
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIY  538 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~  538 (581)
                      +..+|.++.++..+.+ +.|+.+...++.+..-.|+++.|..+|+++..   ++|| ..+|...++.+.-.|+.++|.+.
T Consensus       319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~~  394 (458)
T PRK11906        319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARIC  394 (458)
T ss_pred             HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3455556666666654 44666666666666666666666666666666   4553 44555566666666666666666


Q ss_pred             HHHHHHcCCCCCH---HhHHHHHHHHHhccCCCChHHHH
Q 008022          539 LQKMLNEGICPNF---ATWNVLVRSLFSNLGHLGPVYIL  574 (581)
Q Consensus       539 ~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~  574 (581)
                      +++..+  ..|..   ......+..|+. ...++|++++
T Consensus       395 i~~alr--LsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~  430 (458)
T PRK11906        395 IDKSLQ--LEPRRRKAVVIKECVDMYVP-NPLKNNIKLY  430 (458)
T ss_pred             HHHHhc--cCchhhHHHHHHHHHHHHcC-CchhhhHHHH
Confidence            666554  23432   223333334444 3344555444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.44  E-value=0.14  Score=44.68  Aligned_cols=156  Identities=12%  Similarity=0.041  Sum_probs=115.1

Q ss_pred             HHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHH----HHHHHHHhcCC
Q 008022          350 LCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYN----ELLDGLLRVNR  425 (581)
Q Consensus       350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~  425 (581)
                      ....|+..+|-..++++.+. .|.|...++..=.+|.-.|+.+.-...++++... ..++...|.    .+.-++...|-
T Consensus       113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence            34567888888888888776 4788888888889999999999988888888653 124544333    23345567899


Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 008022          426 VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE---GTKLDAITFNIIIYAYCKQGKVNNAIQL  502 (581)
Q Consensus       426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~  502 (581)
                      +++|.+.-++..+.+ +.|.-........+...|+..++.++..+-...   +.-.-...|...+-.+...+.++.|+++
T Consensus       191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI  269 (491)
T KOG2610|consen  191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI  269 (491)
T ss_pred             chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence            999999999888764 556667777888888899999999988776543   1111123455666777888999999999


Q ss_pred             HHHHhc
Q 008022          503 LDRIRG  508 (581)
Q Consensus       503 ~~~~~~  508 (581)
                      |++-.-
T Consensus       270 yD~ei~  275 (491)
T KOG2610|consen  270 YDREIW  275 (491)
T ss_pred             HHHHHH
Confidence            987544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.43  E-value=0.058  Score=49.83  Aligned_cols=66  Identities=17%  Similarity=0.037  Sum_probs=57.4

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022          407 LPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNI----VTYNTILHGVCRAGMVVEAFQLLGKMLIE  474 (581)
Q Consensus       407 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  474 (581)
                      +.+...++.+..+|...|++++|+..|++.++.  .|+.    .+|..+..+|...|+.++|++.++++++.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345668899999999999999999999999986  4553    35888999999999999999999999985

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.43  E-value=0.25  Score=38.74  Aligned_cols=121  Identities=12%  Similarity=0.093  Sum_probs=62.0

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChh-h--HHHHHHHHHhcCCh
Q 008022           41 RRVGLAEQALKMFYRIREFGLKPTVK-IYNHILDALLAENRFSMINPIYSNMKRDGMEPNVF-T--YNILLKALCKNNRV  116 (581)
Q Consensus        41 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--~~~l~~~~~~~~~~  116 (581)
                      ++.+..++|+..|..+.+.|...-+. ....+.....+.|+...|...|.++-.....|-.. -  ...-.-.+..+|.+
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            34555566666666666544322111 12222334455666666666666665542222221 0  01111223456666


Q ss_pred             hHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022          117 DGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF  161 (581)
Q Consensus       117 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  161 (581)
                      +......+.+...+.+.....-..|.-+-.+.|++..|.++|.++
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qi  193 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQI  193 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence            666666666655544444445555555666666666666666666

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.43  E-value=0.015  Score=34.32  Aligned_cols=41  Identities=15%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 008022           31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHIL   72 (581)
Q Consensus        31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~   72 (581)
                      .++..+...|.+.|++++|.++|+++++..+ .++..|..+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P-~~~~a~~~La   42 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDP-DDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CCHHHHHHhh
Confidence            4677788888888888888888888887654 5566665543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.41  E-value=0.7  Score=41.80  Aligned_cols=102  Identities=15%  Similarity=0.148  Sum_probs=50.6

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 008022          276 LIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM  355 (581)
Q Consensus       276 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  355 (581)
                      -+.-+...|+...|.++-.+..    -|+...|...+.+++..++|++-..+...      .-++..|..++.+|.+.|.
T Consensus       183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence            3444445555555554433321    24555555566666666666555443221      1133555556666666666


Q ss_pred             hhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHH
Q 008022          356 FHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKL  397 (581)
Q Consensus       356 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  397 (581)
                      ..+|..++..+.          +..-+..|.+.|++.+|.+.
T Consensus       253 ~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  253 KKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence            666555554411          13344555555555555544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.35  E-value=0.62  Score=40.60  Aligned_cols=223  Identities=20%  Similarity=0.117  Sum_probs=150.5

Q ss_pred             cCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHhhC-CCCCChhhHHHHHHHhhcCCChHHHH
Q 008022          318 AGNLLGASQIWNRMISNGCSP-NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE-NCPPNTVTFNTFIKGLCGCGRVDWAM  395 (581)
Q Consensus       318 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~  395 (581)
                      .+....+...+.......... ...........+...+.+..+...+...... ..+.....+......+...+++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            355566666666665543221 2456667777788888888888888877652 23455666777777777888888888


Q ss_pred             HHHHHHhhCCCCCChhhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--cccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          396 KLLDQMKQYECLPNITTYNELLD-GLLRVNRVKEAFELVTEIEKCGI--QLNIVTYNTILHGVCRAGMVVEAFQLLGKML  472 (581)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  472 (581)
                      +.+.........+ ......... .+...|+++.|...+........  ......+......+...++.+.+...+.+..
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            8888887654332 122223333 67788899999998888865321  1233334444444667788888888888888


Q ss_pred             HCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          473 IEGTKL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       473 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      ... +. ....+..+...+...++++.|...+.....   ..|+ ...+..+...+...+..+.+...+.+....
T Consensus       195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE---LDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh---hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            763 33 466777888888888888888888888887   3444 445555666666667788888888888763

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.32  E-value=0.94  Score=42.35  Aligned_cols=100  Identities=12%  Similarity=-0.006  Sum_probs=70.8

Q ss_pred             cccHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhcCCCCCCCHHh
Q 008022          442 QLNIVTY-NTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK--QGKVNNAIQLLDRIRGGGEWNPDIIS  518 (581)
Q Consensus       442 ~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~p~~~~  518 (581)
                      .|+..++ +.++..+.+.|-.++|...+..+.... +|+...|..++..-..  +-+...+.++++.+...+|  .|+..
T Consensus       456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l  532 (568)
T KOG2396|consen  456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL  532 (568)
T ss_pred             CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence            3444433 456777778888899999998888763 6777777777653221  2237788888888888777  56667


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          519 YTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       519 ~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      |.....--...|..+.+-.++.++.+
T Consensus       533 w~~y~~~e~~~g~~en~~~~~~ra~k  558 (568)
T KOG2396|consen  533 WMDYMKEELPLGRPENCGQIYWRAMK  558 (568)
T ss_pred             HHHHHHhhccCCCcccccHHHHHHHH
Confidence            77766666678888888888777755

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.30  E-value=0.014  Score=34.44  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=12.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          483 FNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       483 ~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +..++..|.+.|++++|+++++++.+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33444444444444444444444444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.27  E-value=0.081  Score=50.11  Aligned_cols=129  Identities=19%  Similarity=0.168  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCCh
Q 008022          102 TYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKI  181 (581)
Q Consensus       102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~  181 (581)
                      ..+.++..+.+.|..+.|+++...-.            .-.+...+.|+.+.|.++.++.. +...|..|.....++|++
T Consensus       297 ~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~~-~~~~W~~Lg~~AL~~g~~  363 (443)
T PF04053_consen  297 QGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKELD-DPEKWKQLGDEALRQGNI  363 (443)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCCS-THHHHHHHHHHHHHTTBH
T ss_pred             HHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhcC-cHHHHHHHHHHHHHcCCH
Confidence            34555555555566655555433221            12344455555555555433332 334555555555555555


Q ss_pred             hHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHH
Q 008022          182 EEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLW  258 (581)
Q Consensus       182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  258 (581)
                      +-|.+.|.+...         +..|+-.|.-.|+.+...++.+.....|      -++....++...|+.++..+++
T Consensus       364 ~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL  425 (443)
T PF04053_consen  364 ELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLL  425 (443)
T ss_dssp             HHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred             HHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence            555555543321         3344444555555555555444444332      1333334444445555544444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.25  E-value=0.86  Score=41.25  Aligned_cols=106  Identities=19%  Similarity=0.188  Sum_probs=53.4

Q ss_pred             HHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCH
Q 008022          382 IKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV  461 (581)
Q Consensus       382 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  461 (581)
                      +.-+...|+...|.++-++..    .|+...|-..+.+++..++|++-.++-..      +-.+.-|..++.+|.+.|+.
T Consensus       184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~  253 (319)
T PF04840_consen  184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK  253 (319)
T ss_pred             HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence            344444555555555544432    24555555556666666666554443221      11234555556666666666


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008022          462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIR  507 (581)
Q Consensus       462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  507 (581)
                      .+|..+..++     ++     ..-+..|.+.|++.+|.+...+..
T Consensus       254 ~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  254 KEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             HHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHHcC
Confidence            6666555541     11     233445555666666655544443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.17  E-value=0.68  Score=39.34  Aligned_cols=54  Identities=11%  Similarity=0.074  Sum_probs=22.1

Q ss_pred             HhcCChhHHHHHHHHHHHCCC--CCCcccHHHHHHHHHccCChhHHHHHHHHHHHc
Q 008022          176 CKEHKIEEAFWLLCEMVDRGI--DPNVITYSTIISSLCDVGNVETSLGILGQMFVR  229 (581)
Q Consensus       176 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  229 (581)
                      .+.|++++|...|+.+....+  +-...+...++-++.+.++++.|...+++....
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            344455555555554443310  111222233334444444444444444444443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.14  E-value=0.71  Score=39.24  Aligned_cols=184  Identities=10%  Similarity=0.047  Sum_probs=102.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 008022           29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLK--PTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL  106 (581)
Q Consensus        29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  106 (581)
                      .+..+..-+....+.|++++|...|+.+....+-  -...+...++-++-+.++++.|+..+++..+.........|...
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            3444555566667889999999999888864321  23445556667777888899998888888776433333344444


Q ss_pred             HHHHHh-------cCChhH---HHHHHHHHhhCCCCCCcc-hHHHHHHHHHccCCHHHHHHHHHHhCCCcchH-HHHHHH
Q 008022          107 LKALCK-------NNRVDG---AYKLLVEMGNKGCAPDAV-SYTTIVSSICKLGQVEEARELAMRFGSGVSVY-NALING  174 (581)
Q Consensus       107 ~~~~~~-------~~~~~~---a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~l~~~  174 (581)
                      |.+++.       .++...   |..-|+++++.  -||+. +-..              ...+..+.....-+ -.+.+.
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya~dA--------------~~~i~~~~d~LA~~Em~Iary  176 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSRYAPDA--------------KARIVKLNDALAGHEMAIARY  176 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCcchhhH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence            444432       123333   33334444443  22221 1110              00000000000001 134567


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCc---ccHHHHHHHHHccCChhHHHHHHHHHHHc
Q 008022          175 LCKEHKIEEAFWLLCEMVDRGIDPNV---ITYSTIISSLCDVGNVETSLGILGQMFVR  229 (581)
Q Consensus       175 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  229 (581)
                      |.+.|.+..|..-+++|.+. .+-..   ..+..+.++|...|-.++|...-.-+...
T Consensus       177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            88888888888888888876 22222   23445567777788777777665544443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.14  E-value=0.6  Score=38.30  Aligned_cols=89  Identities=16%  Similarity=0.083  Sum_probs=44.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhH
Q 008022           39 SYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDG  118 (581)
Q Consensus        39 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  118 (581)
                      .|-..|-+.-|+-=|.......+ .-+.+||.+.--+...|+++.|.+.|+...+.+...+-...|.-|. +.--|+++-
T Consensus        74 lYDSlGL~~LAR~DftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L  151 (297)
T COG4785          74 LYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL  151 (297)
T ss_pred             hhhhhhHHHHHhhhhhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence            34444555555555555554332 2344566666666666666666666666665542222222222222 224566666


Q ss_pred             HHHHHHHHhhC
Q 008022          119 AYKLLVEMGNK  129 (581)
Q Consensus       119 a~~~~~~~~~~  129 (581)
                      |.+-+...-+.
T Consensus       152 Aq~d~~~fYQ~  162 (297)
T COG4785         152 AQDDLLAFYQD  162 (297)
T ss_pred             hHHHHHHHHhc
Confidence            65555554443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.11  E-value=0.13  Score=37.93  Aligned_cols=92  Identities=17%  Similarity=0.079  Sum_probs=56.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH--HhHHHHHHHHHccCC
Q 008022          454 GVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDI--ISYTSLLWGICNSGG  531 (581)
Q Consensus       454 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~  531 (581)
                      +....|+.+.|++.|.+.+..- +.....||.-..++.-.|+.++|++-+.++.+..|-....  .+|..-+..|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            3456677777777777776642 3456667777777777777777777777776644322111  133334445666777


Q ss_pred             HHHHHHHHHHHHHcC
Q 008022          532 MQEAFIYLQKMLNEG  546 (581)
Q Consensus       532 ~~~A~~~~~~~~~~~  546 (581)
                      -+.|..-|+.+.+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            777777777766554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.09  E-value=0.97  Score=40.33  Aligned_cols=166  Identities=13%  Similarity=0.099  Sum_probs=83.0

Q ss_pred             hhHHHHHHHhhcCCChH---HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHH
Q 008022          376 VTFNTFIKGLCGCGRVD---WAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTIL  452 (581)
Q Consensus       376 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  452 (581)
                      .++..++.+|...+..+   +|..+++.+.... +.....+..-+..+.+.++.+++.+.+..|...- ......+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence            34566677777766654   3444555553322 2224444455666666788888888888888752 22334444444


Q ss_pred             HHHH--hcCCHHHHHHHHHHHHHCCCCcCHH-HHHHH-H---HHHHhcCC------HHHHHHHHHHHhcCCCCCCCHH--
Q 008022          453 HGVC--RAGMVVEAFQLLGKMLIEGTKLDAI-TFNII-I---YAYCKQGK------VNNAIQLLDRIRGGGEWNPDII--  517 (581)
Q Consensus       453 ~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l-~---~~~~~~g~------~~~A~~~~~~~~~~~~~~p~~~--  517 (581)
                      ..+.  .......|...++.++.....|+.. ....+ +   ....+.++      .+...++++.+....+.+.+..  
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~  242 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA  242 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence            4432  1233456666676666554444443 11111 1   11112111      3444444443332121111222  


Q ss_pred             -hHHHHHH----HHHccCCHHHHHHHHHHHH
Q 008022          518 -SYTSLLW----GICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       518 -~~~~l~~----~~~~~g~~~~A~~~~~~~~  543 (581)
                       +..+++|    .+.+.+++++|...|+-..
T Consensus       243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence             2334433    3456778888888777554

It is also involved in sporulation [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.89  E-value=0.27  Score=43.62  Aligned_cols=24  Identities=13%  Similarity=0.099  Sum_probs=11.7

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHH
Q 008022          519 YTSLLWGICNSGGMQEAFIYLQKM  542 (581)
Q Consensus       519 ~~~l~~~~~~~g~~~~A~~~~~~~  542 (581)
                      ...+...|...|+.+.|..-|+.+
T Consensus       249 ~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  249 LLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHhcccHhHHHHHHHHH
Confidence            334444555555555555544443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.82  E-value=1.1  Score=38.89  Aligned_cols=223  Identities=17%  Similarity=0.081  Sum_probs=149.1

Q ss_pred             cCChhhHHHHHHHHHhCCCC-CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCChhHHH
Q 008022          283 NGSMDEAVSVSYQMEENSCP-PNVTTYSALIDGFAKAGNLLGASQIWNRMISN-GCSPNVVAYTCMVKVLCQNNMFHQAH  360 (581)
Q Consensus       283 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~  360 (581)
                      .+....+...+......... ............+...+.+..+...+...... ........+......+...+.+..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            34555566666655554322 13566677777788888888888888877652 22334556666677777788888888


Q ss_pred             HHHHHHhhCCCCCChhhHHHHHH-HhhcCCChHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          361 SLIEKMAFENCPPNTVTFNTFIK-GLCGCGRVDWAMKLLDQMKQYEC--LPNITTYNELLDGLLRVNRVKEAFELVTEIE  437 (581)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  437 (581)
                      ..+.........+ ......... .+...|+++.+...+........  ......+......+...++.+.+...+....
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            8888887653222 222333333 67888999999999988855321  1123334444444667788899999998888


Q ss_pred             HcCCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          438 KCGIQL-NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       438 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ... +. ....+..+...+...++++.|...+....... +.....+..+...+...|.++.+...+.+...
T Consensus       195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            763 33 46677777888888888899999998888753 22344555555566677778888888888887

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.80  E-value=0.25  Score=46.87  Aligned_cols=75  Identities=19%  Similarity=0.234  Sum_probs=33.4

Q ss_pred             HHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 008022          209 SLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDE  288 (581)
Q Consensus       209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  288 (581)
                      ...+.|+++.|.++.++      .++...|..|.......|+++-|.+.|.+...         +..|+-.|.-.|+.+.
T Consensus       327 LAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~  391 (443)
T PF04053_consen  327 LALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREK  391 (443)
T ss_dssp             HHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHH
T ss_pred             HHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHH
Confidence            33445555555544322      12344555555555555555555555544322         2333444444555544


Q ss_pred             HHHHHHHHHh
Q 008022          289 AVSVSYQMEE  298 (581)
Q Consensus       289 a~~~~~~~~~  298 (581)
                      -.++......
T Consensus       392 L~kl~~~a~~  401 (443)
T PF04053_consen  392 LSKLAKIAEE  401 (443)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.78  E-value=1.7  Score=40.72  Aligned_cols=244  Identities=11%  Similarity=0.087  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC------ChhhHHHHHHHHHhCC--CCCcHHhHHHHHHHHHhcCCHHH
Q 008022          252 HEASDLWNRMIREGFLPNVVAYSTLIHGLCSNG------SMDEAVSVSYQMEENS--CPPNVTTYSALIDGFAKAGNLLG  323 (581)
Q Consensus       252 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~  323 (581)
                      +....+|+...+.  .|+...|+..|..|...-      .....+.+++.....+  .+.....|..+.-.+.......+
T Consensus       299 s~~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~  376 (568)
T KOG2396|consen  299 SRCCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEARE  376 (568)
T ss_pred             HHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhH
Confidence            3444666666654  455666666666554432      2333444444444332  12334455555555554443322


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHccC-ChhHH-HHHHHHHhhCCCCCChhhHHHHHHHhhcCCC-h--HHHHHHH
Q 008022          324 ASQIWNRMISNGCSPNVVAYTCMVKVLCQNN-MFHQA-HSLIEKMAFENCPPNTVTFNTFIKGLCGCGR-V--DWAMKLL  398 (581)
Q Consensus       324 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~--~~a~~~~  398 (581)
                         .-..+...++..+...|..-+....... +++-- ..++......-..+....|+...     .++ .  +.-..++
T Consensus       377 ---~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii  448 (568)
T KOG2396|consen  377 ---VAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLII  448 (568)
T ss_pred             ---HHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHH
Confidence               2222222223345555554444443221 22111 11222222221112222233222     122 1  1112233


Q ss_pred             HHHhhCCCCCChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCC
Q 008022          399 DQMKQYECLPNITTY-NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVC--RAGMVVEAFQLLGKMLIEG  475 (581)
Q Consensus       399 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~  475 (581)
                      ....+.+ .|+..++ +.++..+.+.+-.++|...+..+... .+|+...|..++..=.  ..-+..-+.++|+.+...-
T Consensus       449 ~a~~s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f  526 (568)
T KOG2396|consen  449 SALLSVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF  526 (568)
T ss_pred             HHHHHhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh
Confidence            3333333 3455443 56778888899999999999999886 4677777777765422  1234788999999998872


Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       476 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                       ..|+..|...+..-...|..+.+-.++.++.+
T Consensus       527 -g~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k  558 (568)
T KOG2396|consen  527 -GADSDLWMDYMKEELPLGRPENCGQIYWRAMK  558 (568)
T ss_pred             -CCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence             26888888888777789999988888877765

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.69  E-value=0.47  Score=37.14  Aligned_cols=50  Identities=14%  Similarity=0.021  Sum_probs=21.2

Q ss_pred             hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008022            7 EKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIR   57 (581)
Q Consensus         7 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~   57 (581)
                      +.++.+++..+++.+..-.+. ..+.-..-...+..+|+|.+|..+|+.+.
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELE   71 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            334444444444444433221 22222333333444455555555555444

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.64  E-value=0.82  Score=36.01  Aligned_cols=132  Identities=12%  Similarity=0.125  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcc-hHHH
Q 008022           63 PTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPN-VFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAV-SYTT  140 (581)
Q Consensus        63 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~  140 (581)
                      .+...|...++ +.+.+..++|+.-|..+.+.|...- +...........+.|+...|...|+++-.....|-.. -...
T Consensus        57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR  135 (221)
T COG4649          57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR  135 (221)
T ss_pred             cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence            44556666555 4567778888888988887753222 2233344555678899999999999887764333322 1111


Q ss_pred             --HHHHHHccCCHHHHHHHHHHhCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 008022          141 --IVSSICKLGQVEEARELAMRFGSG-----VSVYNALINGLCKEHKIEEAFWLLCEMVDRG  195 (581)
Q Consensus       141 --l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  195 (581)
                        -.-.+...|.++......+.+..+     ......|.-+-.+.|++..|.++|..+....
T Consensus       136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da  197 (221)
T COG4649         136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA  197 (221)
T ss_pred             HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence              123456778888888888877322     2334556667778899999999998877653

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.51  E-value=0.89  Score=35.51  Aligned_cols=84  Identities=11%  Similarity=0.070  Sum_probs=39.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008022          415 ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG  494 (581)
Q Consensus       415 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  494 (581)
                      .++..+...+.+.....+++.+...+ +.+...++.++..|++.+ ..+..+.+..   .   .+......++..|.+.+
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence            34444444555555555555555544 244555555555555432 2333333321   0   11122233455555555


Q ss_pred             CHHHHHHHHHHH
Q 008022          495 KVNNAIQLLDRI  506 (581)
Q Consensus       495 ~~~~A~~~~~~~  506 (581)
                      -++++.-++.++
T Consensus        84 l~~~~~~l~~k~   95 (140)
T smart00299       84 LYEEAVELYKKD   95 (140)
T ss_pred             cHHHHHHHHHhh
Confidence            555555555544

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.41  E-value=0.96  Score=35.31  Aligned_cols=84  Identities=11%  Similarity=0.098  Sum_probs=44.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 008022           35 SVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNN  114 (581)
Q Consensus        35 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  114 (581)
                      .++..+...+.+.....+++.+...+. .++..++.++..+++.+. ......++.      ..+......++..|.+.+
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence            445555556667777777777666553 566666777776665432 222222221      112233334555555555


Q ss_pred             ChhHHHHHHHHH
Q 008022          115 RVDGAYKLLVEM  126 (581)
Q Consensus       115 ~~~~a~~~~~~~  126 (581)
                      -++++.-++..+
T Consensus        84 l~~~~~~l~~k~   95 (140)
T smart00299       84 LYEEAVELYKKD   95 (140)
T ss_pred             cHHHHHHHHHhh
Confidence            555555555443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.28  E-value=0.87  Score=34.01  Aligned_cols=56  Identities=18%  Similarity=0.183  Sum_probs=24.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +......|+-+.-.+++..+.+.+ .+++..+..++.+|.+.|+..++.+++.++-+
T Consensus        93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen   93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            344444555555555555544322 44555555555555555555555555555544

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.27  E-value=7.2  Score=44.53  Aligned_cols=322  Identities=12%  Similarity=0.054  Sum_probs=162.8

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 008022          240 SLLKGYLLGGRTHEASDLWNRMIREGFL--PNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK  317 (581)
Q Consensus       240 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (581)
                      .+..+-.+.+.+.+|.-.++.-.....+  .....+..+...|...+++|...-+...-..     ++..+ .-+-....
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence            3455666778888888888874221111  1222344444588888888887776553111     22223 33445567


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHH-HHHHHhhcCCChHHHHH
Q 008022          318 AGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFN-TFIKGLCGCGRVDWAMK  396 (581)
Q Consensus       318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~  396 (581)
                      .|++..|...|+++.+.+.+ ...+++.++......+.++......+...... .+....++ .-+.+--+.++++....
T Consensus      1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred             hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence            89999999999999887432 36677777777777788877777666555432 22332232 23444456677776666


Q ss_pred             HHHHHhhCCCCCChhhHHH--HHHHHHhcC--CHHHHHHHHHHHHHcCCcc---------cHHHHHHHHHHHHhcCCHHH
Q 008022          397 LLDQMKQYECLPNITTYNE--LLDGLLRVN--RVKEAFELVTEIEKCGIQL---------NIVTYNTILHGVCRAGMVVE  463 (581)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~  463 (581)
                      ...   ..    +..+|..  +...+.+..  +.-.-.+.++.+.+.-+.|         -...|..++....-. +.+.
T Consensus      1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELEN 1611 (2382)
T ss_pred             hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHH
Confidence            554   11    2222222  222222222  1111112333332211111         012233333222111 1111


Q ss_pred             HHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-----CHHhHHHHHHHHHccCCHHHHHH
Q 008022          464 AFQLLGKMLIE-GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-----DIISYTSLLWGICNSGGMQEAFI  537 (581)
Q Consensus       464 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~  537 (581)
                      -.+.+...... ....+...|..-+..-....+..+-+-.+++..-....+|     -..+|...++.....|.++.|..
T Consensus      1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred             HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence            11111111100 0111122222222221112223333322333221111122     24578888888888999999998


Q ss_pred             HHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhhc
Q 008022          538 YLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMAN  580 (581)
Q Consensus       538 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  580 (581)
                      .+-.+.+.+ .|.  .+-..+.-++..|+...|+.++++.+++
T Consensus      1692 all~A~e~r-~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR-LPE--IVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred             HHHhhhhcc-cch--HHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            888887754 233  3445666678889999999998887753

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=95.22  E-value=0.019  Score=31.46  Aligned_cols=22  Identities=27%  Similarity=0.317  Sum_probs=11.2

Q ss_pred             CHHhHHHHHHHHHccCCHHHHH
Q 008022          515 DIISYTSLLWGICNSGGMQEAF  536 (581)
Q Consensus       515 ~~~~~~~l~~~~~~~g~~~~A~  536 (581)
                      ++.+|..++..|...|++++|+
T Consensus        12 n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhhc
Confidence            4445555555555555555543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.22  E-value=0.27  Score=42.75  Aligned_cols=61  Identities=13%  Similarity=0.251  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIR  507 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  507 (581)
                      .++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            344444445555555555555555555443 3344455555555555555555555555443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.16  E-value=0.59  Score=41.57  Aligned_cols=167  Identities=8%  Similarity=-0.019  Sum_probs=100.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCcc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---Cc--CHHHH
Q 008022          413 YNELLDGLLRVNRVKEAFELVTEIEKC-GIQL---NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT---KL--DAITF  483 (581)
Q Consensus       413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~  483 (581)
                      |..+.+++.+..++.+++.+-+.-... |..|   .-.....+..++.-.+.++++++.|+.+.+...   .|  ...++
T Consensus        86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc  165 (518)
T KOG1941|consen   86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC  165 (518)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence            344444444444455555444433321 1111   112333456666677788888888888875411   11  23467


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhc---CCCCCC-C----HHhHHHHHHHHHccCCHHHHHHHHHHHH----HcCCCCC-
Q 008022          484 NIIIYAYCKQGKVNNAIQLLDRIRG---GGEWNP-D----IISYTSLLWGICNSGGMQEAFIYLQKML----NEGICPN-  550 (581)
Q Consensus       484 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~-  550 (581)
                      ..+...|.+..|+++|.-+..++.+   ..++.. +    ..+.-.+..++...|..-+|.+.-++..    ..|-.+- 
T Consensus       166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~  245 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ  245 (518)
T ss_pred             hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence            8888889999999998888777654   122211 1    1233456667788888888888877663    3443332 


Q ss_pred             HHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          551 FATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       551 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      ......+...|...|+.+.|..-++..|.
T Consensus       246 arc~~~~aDIyR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  246 ARCLLCFADIYRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence            23345666778888999888888877653

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.08  E-value=1  Score=33.68  Aligned_cols=59  Identities=12%  Similarity=0.093  Sum_probs=27.5

Q ss_pred             HHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCC
Q 008022          346 MVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYE  405 (581)
Q Consensus       346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  405 (581)
                      .+..+...|.-++-.+++.++...+ .+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus        92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            3344445555555555555554322 4455555555555555555555555555555544

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.06  E-value=1.8  Score=36.43  Aligned_cols=25  Identities=8%  Similarity=0.130  Sum_probs=12.3

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHH
Q 008022          273 YSTLIHGLCSNGSMDEAVSVSYQME  297 (581)
Q Consensus       273 ~~~l~~~~~~~~~~~~a~~~~~~~~  297 (581)
                      |..-..+|....++++|...+.+..
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~   58 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKAS   58 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHH
Confidence            4444445555555555555444433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.63  E-value=0.052  Score=29.71  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=24.2

Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008022           18 LQQMKVEGVSCSEGVFISVINSYRRVGLAEQAL   50 (581)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~   50 (581)
                      |++.++.++. +..+|..+...|...|++++|+
T Consensus         2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence            4566666544 8888888888888888888875

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=94.60  E-value=4.2  Score=38.45  Aligned_cols=93  Identities=10%  Similarity=0.121  Sum_probs=40.0

Q ss_pred             hhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 008022          341 VAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL  420 (581)
Q Consensus       341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  420 (581)
                      ...-.++..+.....+.-...+..+|...|  .+...+..++++|... ..+.-..+|+++.+..+ .|+..-..|+..|
T Consensus        67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y  142 (711)
T COG1747          67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY  142 (711)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence            333444444444444444444444444432  3344444444544444 33444444444444332 1333333333333


Q ss_pred             HhcCCHHHHHHHHHHHHH
Q 008022          421 LRVNRVKEAFELVTEIEK  438 (581)
Q Consensus       421 ~~~~~~~~a~~~~~~~~~  438 (581)
                      .+ ++.+.+..+|..+..
T Consensus       143 Ek-ik~sk~a~~f~Ka~y  159 (711)
T COG1747         143 EK-IKKSKAAEFFGKALY  159 (711)
T ss_pred             HH-hchhhHHHHHHHHHH
Confidence            33 444444444444443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.55  E-value=6.2  Score=40.22  Aligned_cols=82  Identities=20%  Similarity=0.195  Sum_probs=40.0

Q ss_pred             HHhcCChhHHHHHHHHHhhCCCCCCcc-------hHHHHH-HHHHccCCHHHHHHHHHHh----C-----CCcchHHHHH
Q 008022          110 LCKNNRVDGAYKLLVEMGNKGCAPDAV-------SYTTIV-SSICKLGQVEEARELAMRF----G-----SGVSVYNALI  172 (581)
Q Consensus       110 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~a~~~~~~~----~-----~~~~~~~~l~  172 (581)
                      .....++++|..++.++...-..|+..       .+..+- ......|++++|.++.+..    +     .....+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            345678888888888776552222222       122211 1223345556665554443    1     2223344444


Q ss_pred             HHHHhcCChhHHHHHHHHH
Q 008022          173 NGLCKEHKIEEAFWLLCEM  191 (581)
Q Consensus       173 ~~~~~~~~~~~a~~~~~~~  191 (581)
                      .+..-.|++++|..+....
T Consensus       505 ~a~~~~G~~~~Al~~~~~a  523 (894)
T COG2909         505 EAAHIRGELTQALALMQQA  523 (894)
T ss_pred             HHHHHhchHHHHHHHHHHH
Confidence            5555555555555544443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.53  E-value=0.099  Score=28.55  Aligned_cols=27  Identities=30%  Similarity=0.401  Sum_probs=13.9

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          518 SYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      +|..++.++...|++++|+..|+++++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.50  E-value=0.091  Score=28.70  Aligned_cols=28  Identities=18%  Similarity=0.258  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      .+|..++.+|...|++++|+..|+++.+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            3566777777777777777777777776

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.45  E-value=0.097  Score=29.13  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=18.9

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022          518 SYTSLLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       518 ~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                      +|..|+..|.+.|++++|+++|++++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36677778888888888888888754

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.30  E-value=0.1  Score=28.99  Aligned_cols=26  Identities=23%  Similarity=0.336  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008022          482 TFNIIIYAYCKQGKVNNAIQLLDRIR  507 (581)
Q Consensus       482 ~~~~l~~~~~~~g~~~~A~~~~~~~~  507 (581)
                      +|..|+.+|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46778888888888888888888854

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.27  E-value=0.12  Score=28.14  Aligned_cols=27  Identities=26%  Similarity=0.346  Sum_probs=14.1

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          518 SYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      .|..++.++...|++++|++.|+++++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            344455555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=94.25  E-value=0.79  Score=32.37  Aligned_cols=80  Identities=18%  Similarity=0.193  Sum_probs=49.5

Q ss_pred             CHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 008022           29 SEGVFISVINSYRRVGLAE--QALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL  106 (581)
Q Consensus        29 ~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  106 (581)
                      +.+.+..-...|+...+.+  +.++.++.+......|++.+..+.+++|.+.+++..|.++|+-++..- .+....|..+
T Consensus         7 t~eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~   85 (108)
T PF02284_consen    7 TDEEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYI   85 (108)
T ss_dssp             -HHHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHH
T ss_pred             CHHHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHH
Confidence            3444455555555555444  777778888777788888888888888888888888888888877552 2233366666


Q ss_pred             HHH
Q 008022          107 LKA  109 (581)
Q Consensus       107 ~~~  109 (581)
                      ++-
T Consensus        86 lqE   88 (108)
T PF02284_consen   86 LQE   88 (108)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.23  E-value=0.11  Score=28.29  Aligned_cols=28  Identities=18%  Similarity=0.304  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ..+..++.++...|++++|++.++++.+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3566677777777777777777777776

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.23  E-value=8.7  Score=40.61  Aligned_cols=133  Identities=20%  Similarity=0.198  Sum_probs=69.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHh
Q 008022          310 ALIDGFAKAGNLLGASQIWNRMISNGCSPNVV----AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGL  385 (581)
Q Consensus       310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  385 (581)
                      ..+..-.+.|-+..|..++.        |+..    .|......+.....+++|.-.|+..-+.         ...+.+|
T Consensus       913 e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~  975 (1265)
T KOG1920|consen  913 ECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAY  975 (1265)
T ss_pred             HHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHH
Confidence            33334444555555555443        3333    3444444555566667766666654322         3345666


Q ss_pred             hcCCChHHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHH
Q 008022          386 CGCGRVDWAMKLLDQMKQYECLPNIT--TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE  463 (581)
Q Consensus       386 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  463 (581)
                      ..+|+|.+|..+..++...   .+..  +-..|..-+...+++-+|-++..+....   |.     ..+..+++...+++
T Consensus       976 ~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen  976 KECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEE 1044 (1265)
T ss_pred             HHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHH
Confidence            7777777777776665431   1111  1144556666677777777776665532   11     12233445555555


Q ss_pred             HHHHHHH
Q 008022          464 AFQLLGK  470 (581)
Q Consensus       464 a~~~~~~  470 (581)
                      |..+...
T Consensus      1045 Alrva~~ 1051 (1265)
T KOG1920|consen 1045 ALRVASK 1051 (1265)
T ss_pred             HHHHHHh
Confidence            5554433

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.23  E-value=2.5  Score=34.33  Aligned_cols=93  Identities=19%  Similarity=0.086  Sum_probs=66.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc
Q 008022          451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN  528 (581)
Q Consensus       451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  528 (581)
                      +...+...|++++|...++..+......+  ..+-..|.......|.+++|+..++.... .+  -.......-+..+..
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-~~--w~~~~~elrGDill~  171 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE-ES--WAAIVAELRGDILLA  171 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc-cc--HHHHHHHHhhhHHHH
Confidence            34567788999999999988876421111  12234566778889999999999988776 11  123334566778899


Q ss_pred             cCCHHHHHHHHHHHHHcC
Q 008022          529 SGGMQEAFIYLQKMLNEG  546 (581)
Q Consensus       529 ~g~~~~A~~~~~~~~~~~  546 (581)
                      .|+.++|+.-|++.++.+
T Consensus       172 kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         172 KGDKQEARAAYEKALESD  189 (207)
T ss_pred             cCchHHHHHHHHHHHHcc
Confidence            999999999999998864

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.14  E-value=1.4  Score=33.94  Aligned_cols=50  Identities=10%  Similarity=0.010  Sum_probs=23.6

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008022            8 KCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIRE   58 (581)
Q Consensus         8 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~   58 (581)
                      .++.+++..++..+.--.+. ..+.-..-...+...|+|++|..+|+.+..
T Consensus        23 ~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~   72 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLS   72 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence            45555555555555443222 222223333344555555555555555554

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.05  E-value=4.2  Score=36.32  Aligned_cols=163  Identities=10%  Similarity=-0.001  Sum_probs=87.1

Q ss_pred             hHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022          412 TYNELLDGLLRVNRVK---EAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIY  488 (581)
Q Consensus       412 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  488 (581)
                      ++..++.+|...+..+   +|.++++.+... .+..+..+..-+..+.+.++.+.+.+.+.+|+..- .-....+..++.
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~  163 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH  163 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence            5667778888776554   456666666544 23335555556677777899999999999999873 212233333333


Q ss_pred             ---HHHhcCCHHHHHHHHHHHhcCCCCCCCHH-hHH----HHHHHHHccCC------HHHHHHHHHHHHHc-CCCCCHHh
Q 008022          489 ---AYCKQGKVNNAIQLLDRIRGGGEWNPDII-SYT----SLLWGICNSGG------MQEAFIYLQKMLNE-GICPNFAT  553 (581)
Q Consensus       489 ---~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~----~l~~~~~~~g~------~~~A~~~~~~~~~~-~~~~~~~~  553 (581)
                         -+.... ...|...+..+.. ..+.|... ...    ..++.....++      .+....+++...+. +.+.+..+
T Consensus       164 ~i~~l~~~~-~~~a~~~ld~~l~-~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~  241 (278)
T PF08631_consen  164 HIKQLAEKS-PELAAFCLDYLLL-NRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA  241 (278)
T ss_pred             HHHHHHhhC-cHHHHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence               334443 3455555555443 22334332 111    11222222222      34444445533221 22223322


Q ss_pred             HH---HH----HHHHHhccCCCChHHHHHHHh
Q 008022          554 WN---VL----VRSLFSNLGHLGPVYILDDIM  578 (581)
Q Consensus       554 ~~---~l----~~~~~~~g~~~~a~~~~~~~~  578 (581)
                      ..   .+    +..+++.+++++|.++++-.+
T Consensus       242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            22   22    235566799999999998554

It is also involved in sporulation [].

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.04  E-value=1.3  Score=34.02  Aligned_cols=102  Identities=10%  Similarity=0.055  Sum_probs=57.9

Q ss_pred             HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHH
Q 008022          446 VTYNTILHGV---CRAGMVVEAFQLLGKMLIEGTKLDAI-TFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTS  521 (581)
Q Consensus       446 ~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~  521 (581)
                      ...+.|+...   ...++++++..+++.+.-.  .|+.. .-..-+..+...|++++|+.+++.+.+..+..  +..-..
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~--p~~kAL   83 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP--PYGKAL   83 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc--hHHHHH
Confidence            3444444433   3578899999999888875  34332 22233456788899999999999998833222  222223


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022          522 LLWGICNSGGMQEAFIYLQKMLNEGICPNFA  552 (581)
Q Consensus       522 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  552 (581)
                      +..++...|+. .=..+-+++++.|-+|+..
T Consensus        84 ~A~CL~al~Dp-~Wr~~A~~~le~~~~~~a~  113 (153)
T TIGR02561        84 LALCLNAKGDA-EWHVHADEVLARDADADAV  113 (153)
T ss_pred             HHHHHHhcCCh-HHHHHHHHHHHhCCCHhHH
Confidence            33334444442 3344445555655444433

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=94.03  E-value=1.1  Score=35.71  Aligned_cols=112  Identities=11%  Similarity=0.020  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHH---hcCC-------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-
Q 008022          426 VKEAFELVTEIEKCGIQLNIVTYNTILHGVC---RAGM-------VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG-  494 (581)
Q Consensus       426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-  494 (581)
                      ++.|.+..+.....+ +.|...++....++.   +...       +++|+.-|++++..+ +....++..++.+|...+ 
T Consensus         7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHh
Confidence            456666666654443 556655554444443   3333       344455555555533 223467778888887654 


Q ss_pred             ---C-------HHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 008022          495 ---K-------VNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGIC  548 (581)
Q Consensus       495 ---~-------~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  548 (581)
                         +       +++|.+.|+++..   .+|+...|+.-+...      ++|-++..++.+++..
T Consensus        85 l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~~  139 (186)
T PF06552_consen   85 LTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMA------AKAPELHMEIHKQGLG  139 (186)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence               2       4555666666665   568777776655543      3577777777666543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.87  E-value=0.9  Score=39.69  Aligned_cols=79  Identities=16%  Similarity=0.147  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCcchHH
Q 008022           65 VKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGN-----KGCAPDAVSYT  139 (581)
Q Consensus        65 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  139 (581)
                      ..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            3456667777777777777777777777665 56677777777777777777777777777654     36677666655


Q ss_pred             HHHHH
Q 008022          140 TIVSS  144 (581)
Q Consensus       140 ~l~~~  144 (581)
                      .....
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            55544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.81  E-value=6.2  Score=37.40  Aligned_cols=67  Identities=13%  Similarity=0.085  Sum_probs=51.9

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008022          409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQ-LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG  475 (581)
Q Consensus       409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  475 (581)
                      -...-..+..++.+.|+.++|++.++++.+.... .+......|+.++...+.+.++..++.+.-+..
T Consensus       258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~  325 (539)
T PF04184_consen  258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS  325 (539)
T ss_pred             hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence            3444456777788899999999999999875322 234467788999999999999999999976543

The molecular function of this protein is uncertain.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.78  E-value=8.2  Score=38.72  Aligned_cols=165  Identities=12%  Similarity=0.069  Sum_probs=87.5

Q ss_pred             hhhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 008022            5 LGEKCEIDGVQYLLQQMKVEGVSC---SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRF   81 (581)
Q Consensus         5 ~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (581)
                      +.+.+.+++|++.-+.....  .+   .-.+....+..+...|++++|-...-.|..    .+...|...+..+...++.
T Consensus       366 ll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l  439 (846)
T KOG2066|consen  366 LLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQL  439 (846)
T ss_pred             HHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccccc
Confidence            45666677777666544422  22   234556667777778888888877777765    5666777777777666665


Q ss_pred             chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022           82 SMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF  161 (581)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  161 (581)
                      .....   -+.......++..|..++..+.. .+.   ...++-....    +...|+.+.-.-       ....-+++.
T Consensus       440 ~~Ia~---~lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~W----p~~Lys~l~iis-------a~~~q~~q~  501 (846)
T KOG2066|consen  440 TDIAP---YLPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKEW----PGHLYSVLTIIS-------ATEPQIKQN  501 (846)
T ss_pred             chhhc---cCCCCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHhC----ChhhhhhhHHHh-------hcchHHHhh
Confidence            44332   22222222456677777777665 222   2222222222    222222221110       001111111


Q ss_pred             CCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008022          162 GSGVSVYNALINGLCKEHKIEEAFWLLCEMVD  193 (581)
Q Consensus       162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  193 (581)
                      ..+......|+..|...+++..|++++-..++
T Consensus       502 Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~  533 (846)
T KOG2066|consen  502 SESTALLEVLAHLYLYDNKYEKALPIYLKLQD  533 (846)
T ss_pred             ccchhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence            22223334477788888888888887766543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.65  E-value=0.85  Score=37.18  Aligned_cols=98  Identities=12%  Similarity=0.008  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHH--H
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYT--S  521 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~--~  521 (581)
                      ..+..+...|++.|+.+.|.+.|.++.+....+.  ...+..+++.....|++..+...+.++........|...-+  .
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            4566777888888888888888888877643332  34566777778888888888888877765221111222111  1


Q ss_pred             --HHHHHHccCCHHHHHHHHHHHH
Q 008022          522 --LLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       522 --l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                        -+-.+...+++.+|-+.|-...
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence              1223456788888888876663

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.60  E-value=0.99  Score=36.81  Aligned_cols=98  Identities=12%  Similarity=0.130  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCC---CChhhHHH
Q 008022           31 GVFISVINSYRRVGLAEQALKMFYRIREFGLK--PTVKIYNHILDALLAENRFSMINPIYSNMKRDGME---PNVFTYNI  105 (581)
Q Consensus        31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~  105 (581)
                      ..+..++..|.+.|+.+.|++.|.++......  .-.+.+-.+++.....+++..+...+.++...-..   ++......
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            56778899999999999999999998864333  33456778888888899999888888877654212   22111111


Q ss_pred             HHH--HHHhcCChhHHHHHHHHHhh
Q 008022          106 LLK--ALCKNNRVDGAYKLLVEMGN  128 (581)
Q Consensus       106 l~~--~~~~~~~~~~a~~~~~~~~~  128 (581)
                      +..  .+...+++..|-+.|-+...
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCc
Confidence            222  12356788888777776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=93.42  E-value=1.6  Score=35.49  Aligned_cols=88  Identities=15%  Similarity=0.049  Sum_probs=41.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCccc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 008022          419 GLLRVNRVKEAFELVTEIEKCGIQLN-----IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ  493 (581)
Q Consensus       419 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  493 (581)
                      -+...|++++|..-|...+..- ++.     ...|..-..++.+.+.++.|+.-..+.+..+ +.....+..-+.+|.+.
T Consensus       104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM  181 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence            3445555555555555555431 221     1233333344445555555555555555443 22223333334455555


Q ss_pred             CCHHHHHHHHHHHhc
Q 008022          494 GKVNNAIQLLDRIRG  508 (581)
Q Consensus       494 g~~~~A~~~~~~~~~  508 (581)
                      ..+++|++-|+++.+
T Consensus       182 ek~eealeDyKki~E  196 (271)
T KOG4234|consen  182 EKYEEALEDYKKILE  196 (271)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            555555555555555

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=93.42  E-value=10  Score=38.77  Aligned_cols=226  Identities=12%  Similarity=0.015  Sum_probs=116.5

Q ss_pred             HHccCChhHHHHHHHHHhhCCCCCChh-------hHHHH-HHHhhcCCChHHHHHHHHHHhhC----CCCCChhhHHHHH
Q 008022          350 LCQNNMFHQAHSLIEKMAFENCPPNTV-------TFNTF-IKGLCGCGRVDWAMKLLDQMKQY----ECLPNITTYNELL  417 (581)
Q Consensus       350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~  417 (581)
                      .....++.+|..++.++...-..|+..       .++.+ .......|+++.|.++.+.....    ...+....+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            345678888888888776542222211       22222 22334568888888887776542    2224455666777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHH-----HHHHhcCCHHH--HHHHHHHHHHC---CCC---cCHHHHH
Q 008022          418 DGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTIL-----HGVCRAGMVVE--AFQLLGKMLIE---GTK---LDAITFN  484 (581)
Q Consensus       418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~--a~~~~~~~~~~---~~~---~~~~~~~  484 (581)
                      .+..-.|++++|..+..+..+..-.-+...+..+.     ..+...|+...  ....+......   ..+   +-..+..
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            77788899999998888766542223333332222     23445663322  22233322221   111   1122344


Q ss_pred             HHHHHHHh-cCCHHHHHHHHHHHhcCCCCCCCHHh--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHhHHHH
Q 008022          485 IIIYAYCK-QGKVNNAIQLLDRIRGGGEWNPDIIS--YTSLLWGICNSGGMQEAFIYLQKMLNEGICPN----FATWNVL  557 (581)
Q Consensus       485 ~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l  557 (581)
                      .+..++.+ .+...++..-++--.. ....|-...  +..|+......|+.++|...++++......+.    .......
T Consensus       585 ~ll~~~~r~~~~~~ear~~~~~~~~-~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~  663 (894)
T COG2909         585 QLLRAWLRLDLAEAEARLGIEVGSV-YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK  663 (894)
T ss_pred             HHHHHHHHHhhhhHHhhhcchhhhh-cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            44455544 1222333333333332 111222222  23678888899999999999988865433332    2222222


Q ss_pred             HHHH--HhccCCCChHHHHHH
Q 008022          558 VRSL--FSNLGHLGPVYILDD  576 (581)
Q Consensus       558 ~~~~--~~~g~~~~a~~~~~~  576 (581)
                      +...  ...|+.+++..++.+
T Consensus       664 v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         664 VKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             hhHHHhcccCCHHHHHHHHHh
Confidence            2222  235777777666554

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.32  E-value=1.4  Score=37.91  Aligned_cols=34  Identities=24%  Similarity=0.266  Sum_probs=24.3

Q ss_pred             hhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC
Q 008022          287 DEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGN  320 (581)
Q Consensus       287 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  320 (581)
                      +-+++++++|...|+.||..+-..++.++.+.+-
T Consensus       140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            3466777777777777777777777777766654

>PRK11619 lytic murein transglycosylase; Provisional

Probab=93.20  E-value=11  Score=38.35  Aligned_cols=118  Identities=9%  Similarity=-0.023  Sum_probs=70.1

Q ss_pred             cCChhhHHHHHHHHHhCC-CCCcH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHH
Q 008022          283 NGSMDEAVSVSYQMEENS-CPPNV--TTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQA  359 (581)
Q Consensus       283 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  359 (581)
                      ..+.+.|...+....... ..+..  ..+..+.......+..+++...+.......  .+......-++.-...++++.+
T Consensus       254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~  331 (644)
T PRK11619        254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL  331 (644)
T ss_pred             HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence            345678888888765443 22221  223333333333322556666666544332  2444445555555688888888


Q ss_pred             HHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhh
Q 008022          360 HSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ  403 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  403 (581)
                      ...+..|.... .....-.--+..++...|+.++|...|+.+..
T Consensus       332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            88888875532 23444555667776778999999999988743

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.05  E-value=3.6  Score=32.41  Aligned_cols=50  Identities=18%  Similarity=0.141  Sum_probs=23.0

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          457 RAGMVVEAFQLLGKMLIEGTKLDAIT-FNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       457 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +.++.+++..++.-+...  .|.... -..-+..+...|++.+|+.+|+.+.+
T Consensus        22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            344555555555555443  222221 11223344555555555555555544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.89  E-value=1.9  Score=34.98  Aligned_cols=89  Identities=12%  Similarity=0.038  Sum_probs=40.7

Q ss_pred             hhcCCChHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC
Q 008022          385 LCGCGRVDWAMKLLDQMKQYECLPNI----TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM  460 (581)
Q Consensus       385 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  460 (581)
                      +...|++++|..-|...+..-.....    ..|..-..++.+.+.++.|++-....++.+ +.....+..-..+|.+...
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek  183 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK  183 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence            44555555555555555543211111    122222334445555555555555555442 2223333333444555555


Q ss_pred             HHHHHHHHHHHHHC
Q 008022          461 VVEAFQLLGKMLIE  474 (581)
Q Consensus       461 ~~~a~~~~~~~~~~  474 (581)
                      +++|++-|.+++..
T Consensus       184 ~eealeDyKki~E~  197 (271)
T KOG4234|consen  184 YEEALEDYKKILES  197 (271)
T ss_pred             HHHHHHHHHHHHHh
Confidence            55555555555543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.76  E-value=4.2  Score=32.48  Aligned_cols=31  Identities=16%  Similarity=0.427  Sum_probs=16.9

Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022           53 FYRIREFGLKPTVKIYNHILDALLAENRFSM   83 (581)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (581)
                      +..+...+.+|+...+..+++.+.+.|++..
T Consensus        17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~   47 (167)
T PF07035_consen   17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ   47 (167)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            3334445555666666666666666665443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=92.69  E-value=3.3  Score=33.19  Aligned_cols=107  Identities=14%  Similarity=0.035  Sum_probs=53.1

Q ss_pred             hHHHHHHHHHHhhCCCCCChhhHHH---HHHHHHhcCCHHHHHHHHH-------HHHHcCCccc-HHHHHHHHHHHHhcC
Q 008022          391 VDWAMKLLDQMKQYECLPNITTYNE---LLDGLLRVNRVKEAFELVT-------EIEKCGIQLN-IVTYNTILHGVCRAG  459 (581)
Q Consensus       391 ~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~-~~~~~~l~~~~~~~~  459 (581)
                      ++.|.+.++.....+ +.|...++.   .+.-+.+..+..++.++++       +.+.  +.|+ ..++..+..++...+
T Consensus         7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A   83 (186)
T PF06552_consen    7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA   83 (186)
T ss_dssp             HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence            456666666654444 344444333   3333333444344444444       4444  3444 456677777776433


Q ss_pred             ----C-------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          460 ----M-------VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       460 ----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                          +       +++|...|+++...  .|+...|+.-+...      ++|-++..++.+
T Consensus        84 ~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~  135 (186)
T PF06552_consen   84 FLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHK  135 (186)
T ss_dssp             HH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHH
Confidence                2       45555566655553  67777776655433      456666666654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.57  E-value=16  Score=38.77  Aligned_cols=54  Identities=19%  Similarity=0.138  Sum_probs=25.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAI--TFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +.+|..+|++.+|..+..++...   .+..  +-..|+..+...+++-+|-++......
T Consensus       972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen  972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence            34455555555555555544321   1111  113444555555555555555555443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.41  E-value=4.7  Score=32.21  Aligned_cols=29  Identities=14%  Similarity=0.330  Sum_probs=14.2

Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 008022           88 YSNMKRDGMEPNVFTYNILLKALCKNNRV  116 (581)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  116 (581)
                      ++.+.+.+++|+...+..++..+.+.|++
T Consensus        17 irSl~~~~i~~~~~L~~lli~lLi~~~~~   45 (167)
T PF07035_consen   17 IRSLNQHNIPVQHELYELLIDLLIRNGQF   45 (167)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence            33333444555555555555555555543

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.21  E-value=15  Score=37.59  Aligned_cols=49  Identities=20%  Similarity=0.216  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHH
Q 008022          168 YNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQ  225 (581)
Q Consensus       168 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  225 (581)
                      +.+.-+.+...|+.+.....-.-+..         |..++..+...+.+++|++++..
T Consensus       507 retv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~  555 (911)
T KOG2034|consen  507 RETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLN  555 (911)
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444555566666666655444432         44566677777777777777654

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.10  E-value=6.5  Score=33.07  Aligned_cols=20  Identities=10%  Similarity=0.220  Sum_probs=10.3

Q ss_pred             HHHhcCCHHHHHHHHHHHhc
Q 008022          489 AYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       489 ~~~~~g~~~~A~~~~~~~~~  508 (581)
                      .-+..+++.+|+++|+++..
T Consensus       163 yaa~leqY~~Ai~iyeqva~  182 (288)
T KOG1586|consen  163 YAAQLEQYSKAIDIYEQVAR  182 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555544

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=92.04  E-value=6.2  Score=32.73  Aligned_cols=183  Identities=15%  Similarity=0.060  Sum_probs=111.9

Q ss_pred             HHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 008022          349 VLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKE  428 (581)
Q Consensus       349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  428 (581)
                      .|-..|-+.-|..-|.+..... |.-+..||-+.-.+...|+++.|.+.|+...+.+..-+....|.-+. +.--|+++-
T Consensus        74 lYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~L  151 (297)
T COG4785          74 LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKL  151 (297)
T ss_pred             hhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHh
Confidence            3556677777777777766653 55678899998888999999999999999988764333333333332 234588998


Q ss_pred             HHHHHHHHHHcCCcccH--HHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008022          429 AFELVTEIEKCGIQLNI--VTYNTILHGVCRAGMVVEAFQLL-GKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDR  505 (581)
Q Consensus       429 a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  505 (581)
                      |.+=+...-+.+ +.|+  ..|..+.   .+.-++.+|..-+ ++...    .|..-|...+-.|.- |++. ...++++
T Consensus       152 Aq~d~~~fYQ~D-~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~  221 (297)
T COG4785         152 AQDDLLAFYQDD-PNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMER  221 (297)
T ss_pred             hHHHHHHHHhcC-CCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHH
Confidence            888777776653 3233  2232222   2344677776543 44433    244444433322221 3222 2334444


Q ss_pred             HhcCCCCCCC------HHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          506 IRGGGEWNPD------IISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       506 ~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      +.. +.-+..      .++|..++.-+...|+.++|..+|+-++.
T Consensus       222 ~~a-~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         222 LKA-DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             HHh-hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            444 111111      34778888889999999999999998875

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=92.03  E-value=3.8  Score=35.37  Aligned_cols=103  Identities=16%  Similarity=0.200  Sum_probs=55.6

Q ss_pred             ChhhHHHHHHHhhc-----CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHH
Q 008022          374 NTVTFNTFIKGLCG-----CGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTY  448 (581)
Q Consensus       374 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  448 (581)
                      +...|-..+..+..     .+.++-....++.|.+.|+.-|..+|+.|+..+-+-.                ..|. ..+
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nvf  128 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NVF  128 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HHH
Confidence            44445444444432     2444555555566666666666666666665543311                0111 111


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008022          449 NTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK  495 (581)
Q Consensus       449 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  495 (581)
                      ....-.|  -.+-+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus       129 Q~~F~HY--P~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  129 QKVFLHY--PQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHhhC--chhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            1111111  12234577788888888888888888888888877664

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.80  E-value=11  Score=35.14  Aligned_cols=66  Identities=20%  Similarity=0.144  Sum_probs=45.2

Q ss_pred             CChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022          373 PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLP---NITTYNELLDGLLRVNRVKEAFELVTEIEK  438 (581)
Q Consensus       373 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  438 (581)
                      ....++..++..+.+.|.++.|...+..+...+...   .......-+..+-..|+..+|+..++....
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345667777888888888888888888876643221   223333445566677888888888887776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=91.76  E-value=0.29  Score=26.62  Aligned_cols=26  Identities=12%  Similarity=0.249  Sum_probs=12.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          483 FNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       483 ~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      |..++..|...|++++|.+.|++..+
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34444444445555555555444443

...

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=91.62  E-value=17  Score=36.91  Aligned_cols=16  Identities=13%  Similarity=0.137  Sum_probs=9.7

Q ss_pred             HHhccCCCChHHHHHH
Q 008022          561 LFSNLGHLGPVYILDD  576 (581)
Q Consensus       561 ~~~~g~~~~a~~~~~~  576 (581)
                      ++.+|++++|++.+++
T Consensus       515 ~~~~g~~~~AL~~i~~  530 (613)
T PF04097_consen  515 LYHAGQYEQALDIIEK  530 (613)
T ss_dssp             HHHTT-HHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHh
Confidence            4556777777776665

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.49  E-value=9  Score=33.46  Aligned_cols=69  Identities=23%  Similarity=0.250  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHh
Q 008022          482 TFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN-----EGICPNFAT  553 (581)
Q Consensus       482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~  553 (581)
                      ++......|..+|.+.+|.++.++..+   +.| +...+..++..+...|+--.|.+.++++.+     .|+..+...
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~lt---ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi  355 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALT---LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI  355 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhh---cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence            455667889999999999999999998   567 777888999999999998888888887743     355555443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.48  E-value=5.7  Score=32.67  Aligned_cols=75  Identities=11%  Similarity=-0.048  Sum_probs=53.3

Q ss_pred             CcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCcchHHHHHHHHHccCCHHHHH
Q 008022           80 RFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNK---GCAPDAVSYTTIVSSICKLGQVEEAR  155 (581)
Q Consensus        80 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~  155 (581)
                      .-+.|.+.|-.+...+.--++.....+...| ...+.+++.+++....+.   +-.+|+..+.+|+..+.+.|+++.|-
T Consensus       121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  121 GDQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            3456777787777766444555555555444 577888888888877654   33667888889999999998888875

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=91.47  E-value=3.6  Score=28.88  Aligned_cols=63  Identities=17%  Similarity=0.185  Sum_probs=43.3

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022           45 LAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK  108 (581)
Q Consensus        45 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (581)
                      +.-++++.++.+......|++.+..+.+++|.+.+++..|.++|+-++... ..+...|..+++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence            444677777777777777888888888888888888888888888766431 223445655543

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.39  E-value=18  Score=36.81  Aligned_cols=51  Identities=16%  Similarity=0.154  Sum_probs=29.5

Q ss_pred             cCCHHHHHHHHHHHHHCCCCc---CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          458 AGMVVEAFQLLGKMLIEGTKL---DAITF-----NIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       458 ~~~~~~a~~~~~~~~~~~~~~---~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      .|+..+..+..........+.   ....|     ..+...+...|+.++|.....+...
T Consensus       547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            677776555555443321111   33344     2344557778999998888777654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.12  E-value=2.2  Score=40.97  Aligned_cols=25  Identities=24%  Similarity=0.207  Sum_probs=11.9

Q ss_pred             ccHHHHHHHHHccCCHHHHHHHHHH
Q 008022          236 HSFTSLLKGYLLGGRTHEASDLWNR  260 (581)
Q Consensus       236 ~~~~~l~~~~~~~~~~~~a~~~~~~  260 (581)
                      .-|..|.++....+++..|.+.|.+
T Consensus       667 ~Kw~~Lg~~al~~~~l~lA~EC~~~  691 (794)
T KOG0276|consen  667 VKWRQLGDAALSAGELPLASECFLR  691 (794)
T ss_pred             HHHHHHHHHHhhcccchhHHHHHHh
Confidence            3444444444444555444444443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.93  E-value=19  Score=36.11  Aligned_cols=272  Identities=11%  Similarity=0.022  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHhHHHHHHH-----HHhcCChhhHHHHHHHHHh-------CCCCCcHHhHHHHHHHHHhc
Q 008022          251 THEASDLWNRMIREGFLPNVVAYSTLIHG-----LCSNGSMDEAVSVSYQMEE-------NSCPPNVTTYSALIDGFAKA  318 (581)
Q Consensus       251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~  318 (581)
                      ...+.++++...+.|   +...-..+..+     +....+++.|+.+++.+.+       .+   .+.....+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            345666666665554   22221122211     2344566777777766655       33   233445555556553


Q ss_pred             C-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc---cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhh----
Q 008022          319 G-----NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ---NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLC----  386 (581)
Q Consensus       319 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----  386 (581)
                      .     +...|..++......|.+ +....  +...+..   ..+...|..+|......|.. .  .+-.+..+|.    
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~g  375 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLG  375 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCC
Confidence            2     456677777777766532 33222  2222222   23567888888888777632 2  2222222221    


Q ss_pred             cCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH---Hh----cC
Q 008022          387 GCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGV---CR----AG  459 (581)
Q Consensus       387 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~  459 (581)
                      -..+...|..++++..+.| .|...-....+..+.. ++++.+.-.+..+...|.+.....-..++...   ..    ..
T Consensus       376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~  453 (552)
T KOG1550|consen  376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIS  453 (552)
T ss_pred             cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccccccc
Confidence            2346778888888887766 2232222222333333 66777766666666655332222221121111   01    22


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc----cCC
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ----GKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN----SGG  531 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~  531 (581)
                      +...+...+.+....|   +......+...|...    .+++.|...+......    + ......+...+-.    .. 
T Consensus       454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~----~-~~~~~nlg~~~e~g~g~~~-  524 (552)
T KOG1550|consen  454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ----G-AQALFNLGYMHEHGEGIKV-  524 (552)
T ss_pred             chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh----h-hHHHhhhhhHHhcCcCcch-
Confidence            4566777777766654   555556666666543    3588888888887762    2 3344344443322    23 


Q ss_pred             HHHHHHHHHHHHHc
Q 008022          532 MQEAFIYLQKMLNE  545 (581)
Q Consensus       532 ~~~A~~~~~~~~~~  545 (581)
                      +..|.+++++....
T Consensus       525 ~~~a~~~~~~~~~~  538 (552)
T KOG1550|consen  525 LHLAKRYYDQASEE  538 (552)
T ss_pred             hHHHHHHHHHHHhc
Confidence            67788888877664

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=90.87  E-value=0.48  Score=25.70  Aligned_cols=28  Identities=29%  Similarity=0.288  Sum_probs=24.9

Q ss_pred             HhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          517 ISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      .+|..++..|...|++++|...|++.++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4677889999999999999999999987

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=90.60  E-value=0.59  Score=41.20  Aligned_cols=104  Identities=13%  Similarity=0.034  Sum_probs=75.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHcc
Q 008022          451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNS  529 (581)
Q Consensus       451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~  529 (581)
                      -.+.|.+.|.+++|+.+|.+.+... +-++.++..-+.+|.+...+..|..-+..+..   +.. =...|..-+.+-...
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---Ld~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---LDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---hhHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999988753 33888888888999999999998888887776   211 122455555555566


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 008022          530 GGMQEAFIYLQKMLNEGICPNFATWNVLVRS  560 (581)
Q Consensus       530 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  560 (581)
                      |+..+|.+-++..++  ++|+..-+......
T Consensus       179 g~~~EAKkD~E~vL~--LEP~~~ELkK~~a~  207 (536)
T KOG4648|consen  179 GNNMEAKKDCETVLA--LEPKNIELKKSLAR  207 (536)
T ss_pred             hhHHHHHHhHHHHHh--hCcccHHHHHHHHH
Confidence            777888888888876  57775555444433

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.44  E-value=0.6  Score=25.01  Aligned_cols=29  Identities=17%  Similarity=0.329  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 008022           32 VFISVINSYRRVGLAEQALKMFYRIREFG   60 (581)
Q Consensus        32 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~   60 (581)
                      ++..++.++.+.|++++|.+.|++++...
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            45567777888888888888888887643

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.34  E-value=0.41  Score=37.56  Aligned_cols=53  Identities=15%  Similarity=0.153  Sum_probs=25.1

Q ss_pred             HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 008022           72 LDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLV  124 (581)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  124 (581)
                      +..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            34444445555555555555544333444555555555555554444444444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PRK09687 putative lyase; Provisional

Probab=90.34  E-value=13  Score=33.24  Aligned_cols=202  Identities=11%  Similarity=0.000  Sum_probs=104.5

Q ss_pred             ChhhHHHHHHHHHccCCh----hHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCCh-----HHHHHHHHHHhhCCCCCC
Q 008022          339 NVVAYTCMVKVLCQNNMF----HQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRV-----DWAMKLLDQMKQYECLPN  409 (581)
Q Consensus       339 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~  409 (581)
                      |...-...+.++.+.|+.    +++...+..+...  .++..+-...+.++...+..     ..+...+.....   .++
T Consensus        67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~  141 (280)
T PRK09687         67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS  141 (280)
T ss_pred             CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence            444444445555555542    3455555544322  23444444444444333211     122333333222   234


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022          410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG-MVVEAFQLLGKMLIEGTKLDAITFNIIIY  488 (581)
Q Consensus       410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  488 (581)
                      ...-...+.++.+.++ ++++..+-.+.+.   ++...-...+.++.+.+ +.+.+...+..++.   .++..+-...+.
T Consensus       142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~  214 (280)
T PRK09687        142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII  214 (280)
T ss_pred             HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence            4555556666666665 4566666666542   33334333444444432 23456666666664   446666666777


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008022          489 AYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLF  562 (581)
Q Consensus       489 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  562 (581)
                      ++.+.|+ ..|+..+-+..+.    ++.  ....+.++...|.. +|+..+.++.+.  .||..+....+.++.
T Consensus       215 aLg~~~~-~~av~~Li~~L~~----~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~  278 (280)
T PRK09687        215 GLALRKD-KRVLSVLIKELKK----GTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK  278 (280)
T ss_pred             HHHccCC-hhHHHHHHHHHcC----Cch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence            7777777 4566666665551    222  33566677777774 677777777763  356666555555543

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=90.17  E-value=23  Score=35.97  Aligned_cols=39  Identities=15%  Similarity=0.254  Sum_probs=21.6

Q ss_pred             HHHHHHHccCCHHHHHHHHH----HhCCCcchHHHHHHHHHhc
Q 008022          140 TIVSSICKLGQVEEARELAM----RFGSGVSVYNALINGLCKE  178 (581)
Q Consensus       140 ~l~~~~~~~g~~~~a~~~~~----~~~~~~~~~~~l~~~~~~~  178 (581)
                      .++-.+.|+|.+++|.++..    .+......+-..+..|...
T Consensus       116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s  158 (613)
T PF04097_consen  116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS  158 (613)
T ss_dssp             HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence            34455667777777777762    2244455566666666554

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.13  E-value=0.78  Score=26.30  Aligned_cols=28  Identities=21%  Similarity=0.251  Sum_probs=19.8

Q ss_pred             HhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          517 ISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      .+++.++..|...|++++|..+++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4567777777777888888887777743

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=90.10  E-value=9.5  Score=33.48  Aligned_cols=119  Identities=11%  Similarity=0.130  Sum_probs=72.6

Q ss_pred             cCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHh-cCC-cchHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhH
Q 008022           43 VGLAEQALKMFYRIRE-FGLKPTVKIYNHILDALLA-ENR-FSMINPIYSNMKRD-GMEPNVFTYNILLKALCKNNRVDG  118 (581)
Q Consensus        43 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~  118 (581)
                      +.-..+|+++|+.... ..+-.|..+...+++.... .+. ...--++.+-+... +-.++..+...++..++..+++..
T Consensus       141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k  220 (292)
T PF13929_consen  141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK  220 (292)
T ss_pred             hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence            4445667766663322 2233566666777766665 222 22222233333322 235666677777778888888888


Q ss_pred             HHHHHHHHhhC-CCCCCcchHHHHHHHHHccCCHHHHHHHHHHh
Q 008022          119 AYKLLVEMGNK-GCAPDAVSYTTIVSSICKLGQVEEARELAMRF  161 (581)
Q Consensus       119 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  161 (581)
                      -.++++..... +...|...|...++.....|+..-...+...-
T Consensus       221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G  264 (292)
T PF13929_consen  221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG  264 (292)
T ss_pred             HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence            88877776655 45557777888888888888877777776654

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.99  E-value=23  Score=35.55  Aligned_cols=272  Identities=13%  Similarity=0.041  Sum_probs=155.7

Q ss_pred             hhHHHHHHHHHHHcCCCCCcccHHHHHHH-----HHccCCHHHHHHHHHHHHh-------CCCCCCHHhHHHHHHHHHhc
Q 008022          216 VETSLGILGQMFVRGCNPNIHSFTSLLKG-----YLLGGRTHEASDLWNRMIR-------EGFLPNVVAYSTLIHGLCSN  283 (581)
Q Consensus       216 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~  283 (581)
                      ...+.++++...+.|   +......+..+     +....+.+.|+.+++...+       .+   .+.....+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            456777777777765   22222222222     3356788888888887766       44   333455566666664


Q ss_pred             C-----ChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----cc
Q 008022          284 G-----SMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK-AGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLC----QN  353 (581)
Q Consensus       284 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~  353 (581)
                      .     +.+.|..++....+.|. |+.......+..... ..+...|.++|......|..   ..+-.+..+|.    ..
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~  377 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE  377 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence            3     55668888888887763 344333333322222 24577899999988887643   22222333222    23


Q ss_pred             CChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHH-HHHH---Hh----cCC
Q 008022          354 NMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNEL-LDGL---LR----VNR  425 (581)
Q Consensus       354 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~----~~~  425 (581)
                      .+.+.|..++.+....+ .+........+..+.. +.++.+.-.+..+.+.+.. ...+-... +...   ..    ..+
T Consensus       378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~  454 (552)
T KOG1550|consen  378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIST  454 (552)
T ss_pred             CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccc
Confidence            47788999999988887 3332222333334444 7777777777666665533 11111111 1111   11    225


Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHH
Q 008022          426 VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA----GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK----QGKVN  497 (581)
Q Consensus       426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~  497 (581)
                      ...+...+......|   +......+.+.|..-    .+++.|...+......+    ......+...+-.    .. +.
T Consensus       455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~  526 (552)
T KOG1550|consen  455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH  526 (552)
T ss_pred             hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence            566777777766654   455555555555433    46788888888887654    4444445444432    23 67


Q ss_pred             HHHHHHHHHhc
Q 008022          498 NAIQLLDRIRG  508 (581)
Q Consensus       498 ~A~~~~~~~~~  508 (581)
                      .|.+++++..+
T Consensus       527 ~a~~~~~~~~~  537 (552)
T KOG1550|consen  527 LAKRYYDQASE  537 (552)
T ss_pred             HHHHHHHHHHh
Confidence            88888888876

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.82  E-value=0.85  Score=26.15  Aligned_cols=28  Identities=29%  Similarity=0.440  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      .+++.++..|...|++++|..+++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4678888888888888888888888764

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=89.75  E-value=15  Score=33.09  Aligned_cols=128  Identities=13%  Similarity=0.189  Sum_probs=57.9

Q ss_pred             hHHHHHHHHHHHCCCCCCcccHHHHHHHHHc--cCC----hhHHHHHHHHHHHcCC---CCCcccHHHHHHHHHccCCH-
Q 008022          182 EEAFWLLCEMVDRGIDPNVITYSTIISSLCD--VGN----VETSLGILGQMFVRGC---NPNIHSFTSLLKGYLLGGRT-  251 (581)
Q Consensus       182 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~----~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-  251 (581)
                      ++.+.+++.|.+.|+.-+..+|.+.......  ..+    ...+..+|+.|.+...   .++...+..++..  ..++. 
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e  156 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence            3455667777777777776666543333222  222    3456667777766532   1223333333322  22332 


Q ss_pred             ---HHHHHHHHHHHhCCCCCCHH--hHHHHHHHHHhcCC--hhhHHHHHHHHHhCCCCCcHHhHHHH
Q 008022          252 ---HEASDLWNRMIREGFLPNVV--AYSTLIHGLCSNGS--MDEAVSVSYQMEENSCPPNVTTYSAL  311 (581)
Q Consensus       252 ---~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l  311 (581)
                         +.+..+|+.+.+.|...+..  ....++........  ..++..+++.+.+.++++....|..+
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence               23445555555545443322  22222222111111  22445555555555555444444433

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.67  E-value=6.8  Score=32.26  Aligned_cols=21  Identities=14%  Similarity=-0.110  Sum_probs=9.3

Q ss_pred             CHHhHHHHHHHHHccCCHHHH
Q 008022          515 DIISYTSLLWGICNSGGMQEA  535 (581)
Q Consensus       515 ~~~~~~~l~~~~~~~g~~~~A  535 (581)
                      |+..+..|+..+.+.|+++.|
T Consensus       177 n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  177 NPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CHHHHHHHHHHHHHhcchhhh
Confidence            344444444444444444443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.66  E-value=9.3  Score=33.74  Aligned_cols=98  Identities=23%  Similarity=0.239  Sum_probs=47.0

Q ss_pred             hhhHHHHHHHHHccCChhHHHHHHHHHhhCCC---CCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 008022          340 VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENC---PPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNEL  416 (581)
Q Consensus       340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  416 (581)
                      ..+...++..-...++++.+...+-++....-   .++. +-..+++.+. .-++.+++.++..-...|+.||..+.+.+
T Consensus        64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l  141 (418)
T KOG4570|consen   64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLL  141 (418)
T ss_pred             eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHH
Confidence            33444444444445555555555555543310   0111 1111222222 23445555555555556666666666666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc
Q 008022          417 LDGLLRVNRVKEAFELVTEIEKC  439 (581)
Q Consensus       417 ~~~~~~~~~~~~a~~~~~~~~~~  439 (581)
                      +..+.+.+++.+|..+...|...
T Consensus       142 ~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  142 MDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHH
Confidence            66666666666666555555443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.49  E-value=10  Score=33.57  Aligned_cols=104  Identities=17%  Similarity=0.157  Sum_probs=70.2

Q ss_pred             cCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC---CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH
Q 008022          229 RGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREG---FLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNV  305 (581)
Q Consensus       229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  305 (581)
                      .|.+....+...++.......+++.++.++-+++...   ..|+.. -.+.++.+ -.-++++++.++..-...|+-||.
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dq  135 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ  135 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence            3445566666666766666778888888877776541   111111 11222222 234667888888777788888899


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 008022          306 TTYSALIDGFAKAGNLLGASQIWNRMISN  334 (581)
Q Consensus       306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  334 (581)
                      .++..+|..+.+.+++.+|.++.-.+...
T Consensus       136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            99999999999999988888887776654

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.30  E-value=7.7  Score=36.55  Aligned_cols=41  Identities=17%  Similarity=0.274  Sum_probs=27.7

Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChh
Q 008022          177 KEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVE  217 (581)
Q Consensus       177 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  217 (581)
                      ..+.++...+++..+...|.......++.....|.+.|...
T Consensus        29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq   69 (696)
T KOG2471|consen   29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ   69 (696)
T ss_pred             CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence            35667777777777777776666666666666677766543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.27  E-value=0.71  Score=23.27  Aligned_cols=23  Identities=9%  Similarity=0.169  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 008022           32 VFISVINSYRRVGLAEQALKMFY   54 (581)
Q Consensus        32 ~~~~l~~~~~~~g~~~~A~~~~~   54 (581)
                      ....+...+...|++++|..+++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45567777888888888887765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.23  E-value=8  Score=32.16  Aligned_cols=76  Identities=18%  Similarity=0.208  Sum_probs=49.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHH
Q 008022          412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG--TKLDAITFNIIIY  488 (581)
Q Consensus       412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~  488 (581)
                      |.+..+..+.+.+...+++...++-.+.. +.|..+-..++..++-.|++++|..-++-.-...  ..+....|..++.
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            34455666777788888888877766653 5566666677778888888888877776665531  1223444555544

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.21  E-value=2.7  Score=34.71  Aligned_cols=72  Identities=14%  Similarity=0.116  Sum_probs=53.3

Q ss_pred             hhHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 008022            2 IEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLK--PTVKIYNHILDA   74 (581)
Q Consensus         2 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~   74 (581)
                      ++.+.+.+..++++.+.+.-++..+. +......+++.++-.|+|++|..-++-+.+..++  +-...|..++.+
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            46778888888888888888877544 7777788888888899999888877777664432  445567777664

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.97  E-value=0.81  Score=26.77  Aligned_cols=23  Identities=17%  Similarity=0.270  Sum_probs=12.3

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHH
Q 008022          522 LLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       522 l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      +..+|...|+.+.|.+++++.+.
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            44555555555555555555554

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.84  E-value=14  Score=31.75  Aligned_cols=168  Identities=11%  Similarity=-0.013  Sum_probs=98.1

Q ss_pred             hhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc-h
Q 008022            6 GEKCEIDGVQYLLQQMKVEGVS-CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFS-M   83 (581)
Q Consensus         6 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~   83 (581)
                      ++....+.|+++-+.++..++. -++..|...+--.. ..+..+=+++++++...++ .+-.+|..--......|++. .
T Consensus        54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l-~~dL~~El~~l~eI~e~np-KNYQvWHHRr~ive~l~d~s~r  131 (318)
T KOG0530|consen   54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHL-MSDLNKELEYLDEIIEDNP-KNYQVWHHRRVIVELLGDPSFR  131 (318)
T ss_pred             hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHhcCcccc
Confidence            3445556666666666665432 12333333322222 2346667778888887554 56666665555555566766 6


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHc-cCCHH---------H
Q 008022           84 INPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK-LGQVE---------E  153 (581)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~---------~  153 (581)
                      -+.+.+.|.... ..+-.+|..--.++...+.++.-+....++.+.++. +..+|+.-.-.... .|-.+         -
T Consensus       132 ELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~y  209 (318)
T KOG0530|consen  132 ELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELNY  209 (318)
T ss_pred             hHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHHH
Confidence            777778887654 556677777777777778899989998998887665 44555532211111 12111         1


Q ss_pred             HHHHHHHhCCCcchHHHHHHHHHh
Q 008022          154 ARELAMRFGSGVSVYNALINGLCK  177 (581)
Q Consensus       154 a~~~~~~~~~~~~~~~~l~~~~~~  177 (581)
                      +.+.+.-.|.+.++||-|...+..
T Consensus       210 t~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  210 TKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             HHHHHHhCCCCccHHHHHHHHHHh
Confidence            111222227888888877665543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.73  E-value=22  Score=33.74  Aligned_cols=108  Identities=15%  Similarity=0.014  Sum_probs=67.1

Q ss_pred             HHHHccCChhHHHHHHHHHHHc---CCCCC-----cccHHHHHHHHHccCCHHHHHHHHHHHHh-------CCCCCCH--
Q 008022          208 SSLCDVGNVETSLGILGQMFVR---GCNPN-----IHSFTSLLKGYLLGGRTHEASDLWNRMIR-------EGFLPNV--  270 (581)
Q Consensus       208 ~~~~~~g~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~--  270 (581)
                      ..+.-.|++..|.+++...--.   |...+     -..+|.+.-.+.+.|.+..+..+|....+       .|+.|..  
T Consensus       248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~  327 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF  327 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence            4455678899988887653221   21111     12235555556667777777777766553       3444321  


Q ss_pred             ---------HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 008022          271 ---------VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK  317 (581)
Q Consensus       271 ---------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (581)
                               .+|| ..-.|...|++-.|.+.|...... +..++..|..+..+|..
T Consensus       328 tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  328 TLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM  381 (696)
T ss_pred             ehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence                     1233 334577889999999988887764 45688899999888864

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=88.56  E-value=7.1  Score=27.84  Aligned_cols=46  Identities=13%  Similarity=0.121  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          463 EAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       463 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +..+-++.+....+-|++.+....+++|.+.+|+..|.++++-++.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~   73 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD   73 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444444555555555666666666666666666666666665554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.32  E-value=13  Score=30.48  Aligned_cols=87  Identities=16%  Similarity=0.043  Sum_probs=38.8

Q ss_pred             HHhhcCCChHHHHHHHHHHhhCCCCCChhhHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Q 008022          383 KGLCGCGRVDWAMKLLDQMKQYECLPNITTYN-----ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR  457 (581)
Q Consensus       383 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  457 (581)
                      ..+...+++++|...++.....   |....+.     .|.......|.+++|+.+++.....++.  ......-.+.+..
T Consensus        97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~  171 (207)
T COG2976          97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA  171 (207)
T ss_pred             HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence            3444555555555555544432   1212221     2233344455555555555554433221  1222223344555


Q ss_pred             cCCHHHHHHHHHHHHHC
Q 008022          458 AGMVVEAFQLLGKMLIE  474 (581)
Q Consensus       458 ~~~~~~a~~~~~~~~~~  474 (581)
                      .|+.++|+.-|++.+..
T Consensus       172 kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         172 KGDKQEARAAYEKALES  188 (207)
T ss_pred             cCchHHHHHHHHHHHHc
Confidence            55555555555555544

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=88.32  E-value=3.7  Score=36.49  Aligned_cols=91  Identities=13%  Similarity=-0.019  Sum_probs=51.6

Q ss_pred             HHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCH
Q 008022          382 IKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV  461 (581)
Q Consensus       382 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  461 (581)
                      ..-|.+.|.+++|+..|....... +.+.+++..-..+|.+...+..|..=....+..+ ..-...|..-+.+-...|..
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence            455667777777777776665543 2266666666667777777766655555544332 11222333333343445566


Q ss_pred             HHHHHHHHHHHHC
Q 008022          462 VEAFQLLGKMLIE  474 (581)
Q Consensus       462 ~~a~~~~~~~~~~  474 (581)
                      .+|.+-++..+..
T Consensus       182 ~EAKkD~E~vL~L  194 (536)
T KOG4648|consen  182 MEAKKDCETVLAL  194 (536)
T ss_pred             HHHHHhHHHHHhh
Confidence            6666666666653

>PRK11619 lytic murein transglycosylase; Provisional

Probab=88.31  E-value=32  Score=35.11  Aligned_cols=54  Identities=9%  Similarity=0.072  Sum_probs=25.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHH
Q 008022          312 IDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKM  366 (581)
Q Consensus       312 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  366 (581)
                      ++.-...++++.+...+..|.... .-...-.--+.+++...|+.++|...|+.+
T Consensus       319 ~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~  372 (644)
T PRK11619        319 VRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL  372 (644)
T ss_pred             HHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            333345555555555555543321 112222333444444456666665555554

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.27  E-value=36  Score=35.66  Aligned_cols=56  Identities=9%  Similarity=-0.013  Sum_probs=34.0

Q ss_pred             hHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHh
Q 008022            3 EKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISV----INSYRRVGLAEQALKMFYRIRE   58 (581)
Q Consensus         3 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~   58 (581)
                      ..+....++++|..+-+.....++.....+...-    +--+..+|++++|.+.|.++..
T Consensus       315 ~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~~  374 (877)
T KOG2063|consen  315 QDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSEI  374 (877)
T ss_pred             HHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence            4556667788888777766554332111111111    2225678999999999998875

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=87.89  E-value=11  Score=31.96  Aligned_cols=119  Identities=9%  Similarity=-0.084  Sum_probs=62.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHH
Q 008022          420 LLRVNRVKEAFELVTEIEKCGIQLNI-VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD-AITFNIIIYAYCKQGKVN  497 (581)
Q Consensus       420 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  497 (581)
                      |....++..|+..|.+.+..  .|+. .-|..-+.++.+..+++.+.+--.+.++.  .|+ ......+.........++
T Consensus        20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence            33445566676666665553  4544 33444555666667777766666666553  333 334445556666667777


Q ss_pred             HHHHHHHHHhcC---CCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022          498 NAIQLLDRIRGG---GEWNPDIISYTSLLWGICNSGGMQEAFIYLQKM  542 (581)
Q Consensus       498 ~A~~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (581)
                      +|+..+.++...   .+.+|....+..|..+-...=...+..++.++.
T Consensus        96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~  143 (284)
T KOG4642|consen   96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL  143 (284)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence            777777766331   223333344444544433333334444444443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.74  E-value=0.85  Score=24.39  Aligned_cols=22  Identities=27%  Similarity=0.444  Sum_probs=9.5

Q ss_pred             HHHHHHccCCHHHHHHHHHHHH
Q 008022          522 LLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       522 l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                      ++.++.+.|++++|.+.|++++
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~   27 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLI   27 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHH
Confidence            3334444444444444444443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=87.53  E-value=1.9  Score=25.26  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=18.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhC
Q 008022           35 SVINSYRRVGLAEQALKMFYRIREF   59 (581)
Q Consensus        35 ~l~~~~~~~g~~~~A~~~~~~~~~~   59 (581)
                      .+.++|...|+.+.|+++++.+...
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHc
Confidence            4667777777777777777777753

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=87.24  E-value=22  Score=32.02  Aligned_cols=145  Identities=13%  Similarity=0.046  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--c----CCHHHHHHHHHHHHHcCC---cccHHHHHHHHHHHHhcCC--
Q 008022          392 DWAMKLLDQMKQYECLPNITTYNELLDGLLR--V----NRVKEAFELVTEIEKCGI---QLNIVTYNTILHGVCRAGM--  460 (581)
Q Consensus       392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~--  460 (581)
                      ++...+++.+.+.|+..+..+|.+.......  .    .....+..+++.|++...   .++...+..++..  ..++  
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e  156 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence            3456677777887777666655443332222  1    234567888888887632   2334445444433  3333  


Q ss_pred             --HHHHHHHHHHHHHCCCCcCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHH
Q 008022          461 --VVEAFQLLGKMLIEGTKLDAI--TFNIIIYAYCKQGK--VNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQE  534 (581)
Q Consensus       461 --~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  534 (581)
                        .+.++.+|+.+.+.|...+..  ....++..+.....  ..++.++++.+.+ .++++....|..++-...-.+..++
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlLall~~~~~~  235 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLLALLEDPEEK  235 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHHHhcCCchHH
Confidence              355677777777766654332  33333333222222  3467777777777 4677766667666554444443324


Q ss_pred             HHHHH
Q 008022          535 AFIYL  539 (581)
Q Consensus       535 A~~~~  539 (581)
                      ...-+
T Consensus       236 ~~~~i  240 (297)
T PF13170_consen  236 IVEEI  240 (297)
T ss_pred             HHHHH
Confidence            33333

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=87.18  E-value=26  Score=32.71  Aligned_cols=66  Identities=17%  Similarity=0.144  Sum_probs=49.5

Q ss_pred             CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCC---ChhhHHHHHHHhhcCCChHHHHHHHHHHhh
Q 008022          338 PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPP---NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ  403 (581)
Q Consensus       338 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  403 (581)
                      ....++..++..+.+.|.++.|...+..+...+...   .+...-.-+...-..|+..+|...++....
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345577888889999999999999999887654222   344455556667778899999999888876

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=87.00  E-value=36  Score=34.29  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=24.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHH
Q 008022           34 ISVINSYRRVGLAEQALKMFYRIR-EFGLKPTVKIYNHILD   73 (581)
Q Consensus        34 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~   73 (581)
                      ..+-..|...|++++|+++--... ...+.++...+..++.
T Consensus        63 L~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etiva  103 (929)
T KOG2062|consen   63 LLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVA  103 (929)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHH
Confidence            445567888888888887655443 3344455555555443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.85  E-value=21  Score=31.36  Aligned_cols=54  Identities=13%  Similarity=0.165  Sum_probs=25.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022          417 LDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKM  471 (581)
Q Consensus       417 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  471 (581)
                      ...|..+|.+.+|.++.+.....+ +.+...+..++..+...||--.+.+.++++
T Consensus       286 a~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         286 ARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            344444555555555555444432 334444444455555555444444444433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.24  E-value=41  Score=34.16  Aligned_cols=72  Identities=15%  Similarity=0.104  Sum_probs=32.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhC--CCcchHHHHHHHHHh
Q 008022          102 TYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFG--SGVSVYNALINGLCK  177 (581)
Q Consensus       102 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~l~~~~~~  177 (581)
                      .....|..+...|++++|-...-.|...    +...|...+..+...++......++-..+  .++.+|..++..+..
T Consensus       394 v~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  394 VGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             HHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence            3444455555555555555555555443    44444444444444444433333322221  233445555544444

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=86.09  E-value=28  Score=32.00  Aligned_cols=119  Identities=8%  Similarity=-0.012  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 008022          427 KEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK---QGKVNNAIQLL  503 (581)
Q Consensus       427 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~  503 (581)
                      +.-+.+++++++.. +.+......++..+.+..+.++..+.+++++... +-+...|..++.....   .-.++....+|
T Consensus        48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y  125 (321)
T PF08424_consen   48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY  125 (321)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            34455666666653 4556666666677777777777777777777653 3355666665544433   22355555555


Q ss_pred             HHHhcCC-----CC------CCC-----HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 008022          504 DRIRGGG-----EW------NPD-----IISYTSLLWGICNSGGMQEAFIYLQKMLNEGI  547 (581)
Q Consensus       504 ~~~~~~~-----~~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  547 (581)
                      .++....     +.      .|+     ...+..+...+...|..+.|+.+++-+++..+
T Consensus       126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            4443211     00      011     01223333344578888888888888877654

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=85.98  E-value=8.5  Score=33.42  Aligned_cols=93  Identities=11%  Similarity=0.036  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022           31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKAL  110 (581)
Q Consensus        31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  110 (581)
                      .....-|++++..++|.+++.+.-+.-+..-+-.+.+...-|-.|.+.+++..+.++-....+..-..+...|..++..|
T Consensus        84 sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy  163 (309)
T PF07163_consen   84 SLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY  163 (309)
T ss_pred             hhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence            34556688999999999998876655543333456667777778899999999999988888763233444577777666


Q ss_pred             Hh-----cCChhHHHHHH
Q 008022          111 CK-----NNRVDGAYKLL  123 (581)
Q Consensus       111 ~~-----~~~~~~a~~~~  123 (581)
                      ..     .|.+++|+++.
T Consensus       164 Ll~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  164 LLHVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHHHhccccHHHHHHHH
Confidence            54     59999999887

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.76  E-value=30  Score=32.08  Aligned_cols=65  Identities=12%  Similarity=0.249  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 008022           30 EGVFISVINSYRRVGLAEQALKMFYRIREF--GLKPTVKIYNHILDALLAENRFSMINPIYSNMKRD   94 (581)
Q Consensus        30 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   94 (581)
                      ...+..+...|...|+.+.|++.+.++...  .....+..|..+|......|+|........+..+.
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st  216 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST  216 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence            356777888999999999999999886642  12234556777777778889988888877777654

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=85.72  E-value=12  Score=32.64  Aligned_cols=91  Identities=14%  Similarity=0.075  Sum_probs=63.5

Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHH----
Q 008022           70 HILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSI----  145 (581)
Q Consensus        70 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----  145 (581)
                      .-|++++..|+|.+++.+.-+--+..-+..+.+...=|-.|.+.+.+..+.++-....+.--.-+...|..+++.|    
T Consensus        88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V  167 (309)
T PF07163_consen   88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV  167 (309)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence            3478899999999988877666554212233455566777889999999999888776652222333466666555    


Q ss_pred             -HccCCHHHHHHHHHH
Q 008022          146 -CKLGQVEEARELAMR  160 (581)
Q Consensus       146 -~~~g~~~~a~~~~~~  160 (581)
                       .-.|.+++|+++...
T Consensus       168 LlPLG~~~eAeelv~g  183 (309)
T PF07163_consen  168 LLPLGHFSEAEELVVG  183 (309)
T ss_pred             HhccccHHHHHHHHhc
Confidence             456999999999854

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PRK10941 hypothetical protein; Provisional

Probab=85.45  E-value=15  Score=32.40  Aligned_cols=75  Identities=11%  Similarity=-0.032  Sum_probs=45.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHH
Q 008022          449 NTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLW  524 (581)
Q Consensus       449 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~  524 (581)
                      +.+-.+|.+.++++.|.++.+.++... +.++.-+..-+-.|.+.|.+..|..-++...+..+-.|+.......+.
T Consensus       185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            344455667777777777777777653 334545555666677777777777777776664444444444444333

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.94  E-value=21  Score=34.90  Aligned_cols=101  Identities=18%  Similarity=0.224  Sum_probs=61.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 008022          420 LLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNA  499 (581)
Q Consensus       420 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  499 (581)
                      ..+.|+.+.|.++..+..      +..-|..|.++....+++..|.+++.+...         |..|+-.+...|+-+.-
T Consensus       647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l  711 (794)
T KOG0276|consen  647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL  711 (794)
T ss_pred             hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence            345666666666544432      455677777777777777777777766654         33455566666666655


Q ss_pred             HHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022          500 IQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKM  542 (581)
Q Consensus       500 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (581)
                      ..+-....+.+       ..|....+|...|+++++++++.+-
T Consensus       712 ~~la~~~~~~g-------~~N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  712 AVLASLAKKQG-------KNNLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             HHHHHHHHhhc-------ccchHHHHHHHcCCHHHHHHHHHhc
Confidence            55544444411       1223344567788888888776654

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=84.63  E-value=48  Score=33.49  Aligned_cols=76  Identities=16%  Similarity=0.093  Sum_probs=28.1

Q ss_pred             HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          395 MKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKML  472 (581)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  472 (581)
                      ....+.+...-...+......++..|.+.|-.+.|.++.+.+-..-  ....-|..-+..+.++|+......+.+.+.
T Consensus       390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll  465 (566)
T PF07575_consen  390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL  465 (566)
T ss_dssp             HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3344444333323344445556666666776666666666554431  122334444555566666655555555444

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=84.36  E-value=12  Score=26.42  Aligned_cols=47  Identities=13%  Similarity=0.107  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      -++.+-++.+....+-|++.+....+++|.+.+|+..|.++++.++.
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~   70 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD   70 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34444555555555566666666666666666666666666665554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PRK09687 putative lyase; Provisional

Probab=84.26  E-value=30  Score=30.91  Aligned_cols=137  Identities=15%  Similarity=0.073  Sum_probs=69.0

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCcccHHHHH
Q 008022          164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVG-NVETSLGILGQMFVRGCNPNIHSFTSLL  242 (581)
Q Consensus       164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~  242 (581)
                      +..+....+.++.+.++ ..++..+-.+.+.   +|...-...+.++...+ ....+...+..+..   .++..+-...+
T Consensus       141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~  213 (280)
T PRK09687        141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI  213 (280)
T ss_pred             CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence            44444555555555554 3444444444442   23333333344444432 13344444444442   33555556666


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHH
Q 008022          243 KGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFA  316 (581)
Q Consensus       243 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (581)
                      .++.+.++. .+...+-...+.+   +  .....+.++...|+. +|...+..+...  .+|..+-...+.++.
T Consensus       214 ~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~  278 (280)
T PRK09687        214 IGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK  278 (280)
T ss_pred             HHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence            666666663 4555554444432   2  233556667777774 577777776653  235555555555543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.94  E-value=0.34  Score=38.03  Aligned_cols=51  Identities=4%  Similarity=0.129  Sum_probs=24.8

Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHH
Q 008022           39 SYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYS   89 (581)
Q Consensus        39 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   89 (581)
                      .+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++
T Consensus        16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            333444555555555555544433445555555555555555555554444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=83.66  E-value=41  Score=31.94  Aligned_cols=20  Identities=15%  Similarity=0.220  Sum_probs=15.8

Q ss_pred             HccCCHHHHHHHHHHHHHcC
Q 008022          527 CNSGGMQEAFIYLQKMLNEG  546 (581)
Q Consensus       527 ~~~g~~~~A~~~~~~~~~~~  546 (581)
                      .+..++..|+++|+++.+.+
T Consensus       787 ~~~~~~~~~~~~~~~~~~~~  806 (831)
T PRK15180        787 MHLRDYTQALQYWQRLEKVN  806 (831)
T ss_pred             hHHHHHHHHHHHHHHHHhcc
Confidence            45568889999999997754

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=83.56  E-value=27  Score=29.76  Aligned_cols=85  Identities=8%  Similarity=-0.084  Sum_probs=47.2

Q ss_pred             hhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 008022            6 GEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMIN   85 (581)
Q Consensus         6 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   85 (581)
                      ....+++.|...|.+.+..++. ....|..-+..+.+..+++.+..=..+.++..+ ..+.....+-........++.|+
T Consensus        21 f~~k~y~~ai~~y~raI~~nP~-~~~Y~tnralchlk~~~~~~v~~dcrralql~~-N~vk~h~flg~~~l~s~~~~eaI   98 (284)
T KOG4642|consen   21 FIPKRYDDAIDCYSRAICINPT-VASYYTNRALCHLKLKHWEPVEEDCRRALQLDP-NLVKAHYFLGQWLLQSKGYDEAI   98 (284)
T ss_pred             cchhhhchHHHHHHHHHhcCCC-cchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh-HHHHHHHHHHHHHHhhccccHHH
Confidence            3445666677766666655332 334555556666667777766666665555321 12223333344555566666776


Q ss_pred             HHHHHHH
Q 008022           86 PIYSNMK   92 (581)
Q Consensus        86 ~~~~~~~   92 (581)
                      ..+.+..
T Consensus        99 ~~Lqra~  105 (284)
T KOG4642|consen   99 KVLQRAY  105 (284)
T ss_pred             HHHHHHH
Confidence            6666653

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=82.64  E-value=29  Score=29.47  Aligned_cols=65  Identities=11%  Similarity=0.123  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHhcCCHH-------HHHHHHHHHhcCCCC--CC-C-HHhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 008022          482 TFNIIIYAYCKQGKVN-------NAIQLLDRIRGGGEW--NP-D-IISYTSLLWGICNSGGMQEAFIYLQKMLNEG  546 (581)
Q Consensus       482 ~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~--~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  546 (581)
                      .+..++..|...|+.+       .|.+.|.++.+....  .+ + ....-.++....+.|+.++|.+.|.+++..+
T Consensus       120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            3455556666666633       355555555442221  11 2 2233345556677888888888888887654

>smart00028 TPR Tetratricopeptide repeats

Probab=82.58  E-value=2.7  Score=21.67  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=9.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHh
Q 008022          485 IIIYAYCKQGKVNNAIQLLDRIR  507 (581)
Q Consensus       485 ~l~~~~~~~g~~~~A~~~~~~~~  507 (581)
                      .++..+...|++++|...++...
T Consensus         6 ~~a~~~~~~~~~~~a~~~~~~~~   28 (34)
T smart00028        6 NLGNAYLKLGDYDEALEYYEKAL   28 (34)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHH
Confidence            33334444444444444444333

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=82.41  E-value=20  Score=27.37  Aligned_cols=66  Identities=9%  Similarity=0.119  Sum_probs=31.7

Q ss_pred             ccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          443 LNIVTYNTILHGVCRAGM---VVEAFQLLGKMLIE-GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       443 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ++..+-..+..++.+..+   ..+.+.+++++.+. ...........|.-++.+.++|++++++.+.+.+
T Consensus        30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~   99 (149)
T KOG3364|consen   30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE   99 (149)
T ss_pred             chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence            344444444444444432   34445555555542 1122233444455555566666666666665555

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=82.40  E-value=4.1  Score=27.38  Aligned_cols=47  Identities=15%  Similarity=0.097  Sum_probs=26.4

Q ss_pred             hcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHHHHHHHccCCHHHHHHH
Q 008022          492 KQGKVNNAIQLLDRIRGGGEWNPD-IISYTSLLWGICNSGGMQEAFIY  538 (581)
Q Consensus       492 ~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~  538 (581)
                      ...+.++|+..|.++.++..-.|+ ..++..++.+|...|++++.+++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666653332222 22455566666666666666654

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=82.11  E-value=5.3  Score=24.60  Aligned_cols=23  Identities=17%  Similarity=0.190  Sum_probs=10.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhc
Q 008022          486 IIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       486 l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ++-++.+.|++++|.+..+.+.+
T Consensus         7 lAig~ykl~~Y~~A~~~~~~lL~   29 (53)
T PF14853_consen    7 LAIGHYKLGEYEKARRYCDALLE   29 (53)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHh
Confidence            33444444444444444444444

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=81.02  E-value=39  Score=29.84  Aligned_cols=26  Identities=15%  Similarity=0.140  Sum_probs=13.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008022          479 DAITFNIIIYAYCKQGKVNNAIQLLD  504 (581)
Q Consensus       479 ~~~~~~~l~~~~~~~g~~~~A~~~~~  504 (581)
                      ++.....++..|.+.|++.+|...|-
T Consensus        89 dp~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   89 DPELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            44555556666666666666555443

; PDB: 3LKU_E 2WPV_G.

>smart00028 TPR Tetratricopeptide repeats

Probab=80.33  E-value=3.4  Score=21.29  Aligned_cols=27  Identities=26%  Similarity=0.282  Sum_probs=23.1

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          518 SYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      .|..++..+...|++++|...+++.++
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            567788888999999999999998876

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=80.28  E-value=18  Score=25.80  Aligned_cols=48  Identities=6%  Similarity=0.029  Sum_probs=19.6

Q ss_pred             HhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 008022           76 LAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNK  129 (581)
Q Consensus        76 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (581)
                      ...|+|++|..+.+...    .||...|.++-..  +.|--+.+..-+.++...
T Consensus        50 mNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~l~~rl~rla~s   97 (115)
T TIGR02508        50 MNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSALESRLNRLAAS   97 (115)
T ss_pred             HccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence            34445555544443331    3444444433222  334444444444444433

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=80.23  E-value=11  Score=23.30  Aligned_cols=38  Identities=24%  Similarity=0.225  Sum_probs=27.9

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 008022          520 TSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVR  559 (581)
Q Consensus       520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  559 (581)
                      -.+..++.+.|++++|.++.+.+++  +.|+......|-.
T Consensus         5 Y~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    5 YYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence            3566788999999999999999998  5787655444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	581
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-20
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 94.9 bits (234), Expect = 2e-20
 Identities = 35/256 (13%), Positives = 84/256 (32%), Gaps = 5/256 (1%)

Query: 198 PNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDL 257
           P     + ++       +++      GQ      +       +  K  LL  +   A  L
Sbjct: 90  PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149

Query: 258 ---WNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDG 314
               +   ++  L  +  Y+ ++ G    G+  E V V + +++    P++ +Y+A +  
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209

Query: 315 FAKAGNLLGASQ-IWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPP 373
             +     G  +    +M   G     +    ++    +  +    H +    +     P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269

Query: 374 NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELV 433
             V  +  ++ +          KL   +K  +CL     + E L   + V  V++     
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHME-LASRVCVVSVEKPTLPS 328

Query: 434 TEIEKCGIQLNIVTYN 449
            E++     L  +   
Sbjct: 329 KEVKHARKTLKTLRDQ 344

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 85.3 bits (209), Expect = 2e-17
 Identities = 30/223 (13%), Positives = 63/223 (28%), Gaps = 9/223 (4%)

Query: 91  MKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQ 150
            ++    P       LL+       +D       +      +                 Q
Sbjct: 83  TRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQ 142

Query: 151 VEEARELAMRFGSG--------VSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVIT 202
           +  A  L +             + +YNA++ G  ++   +E  ++L  + D G+ P++++
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202

Query: 203 YSTIISSLCDVGN-VETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRM 261
           Y+  +  +        T    L QM   G          LL              +    
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262

Query: 262 IREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPN 304
                LP  V  S L+  + +         +   ++   C   
Sbjct: 263 SLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 83.3 bits (204), Expect = 9e-17
 Identities = 26/176 (14%), Positives = 58/176 (32%), Gaps = 5/176 (2%)

Query: 352 QNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYE---CLP 408
                    +   + +             F K      ++  A  LL           L 
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163

Query: 409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQ-L 467
            +  YN ++ G  R    KE   ++  ++  G+  ++++Y   L  + R        +  
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223

Query: 468 LGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLL 523
           L +M  EG KL A+   +++    +   +    ++        +  P  ++ + LL
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ-LPPPVNTSKLL 278

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 75.6 bits (184), Expect = 2e-14
 Identities = 16/189 (8%), Positives = 50/189 (26%), Gaps = 4/189 (2%)

Query: 191 MVDRGIDPNVITYSTIISSLCDVGNVETSLGIL---GQMFVRGCNPNIHSFTSLLKGYLL 247
                +                   +  +  +L        +     +  + +++ G+  
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177

Query: 248 GGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVS-VSYQMEENSCPPNVT 306
            G   E   +   +   G  P++++Y+  +  +         +     QM +        
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237

Query: 307 TYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKM 366
             + L+    +A  L    ++          P  V  + +++ +   +       L   +
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297

Query: 367 AFENCPPNT 375
               C    
Sbjct: 298 KTLQCLFEK 306

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 74.9 bits (182), Expect = 3e-14
 Identities = 19/206 (9%), Positives = 58/206 (28%), Gaps = 9/206 (4%)

Query: 16  YLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDAL 75
            L    +    S  E     ++         +       +  +  L    +         
Sbjct: 78  CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137

Query: 76  LAENRFSMINPI---YSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCA 132
           L  ++  + + +   +   ++      +  YN ++    +         +L  + + G  
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197

Query: 133 PDAVSYTTIVSSICKLGQVEEARELAMRF-----GSGVSVYNALINGLCKEHKIEEAFWL 187
           PD +SY   +  + +  Q     E  +           +++ A++        + +A   
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257

Query: 188 LC-EMVDRGIDPNVITYSTIISSLCD 212
           +          P  +  S ++  +  
Sbjct: 258 VKPTFSLPPQLPPPVNTSKLLRDVYA 283

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 69.1 bits (167), Expect = 3e-12
 Identities = 23/178 (12%), Positives = 51/178 (28%), Gaps = 3/178 (1%)

Query: 390 RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVT---EIEKCGIQLNIV 446
            +D       Q  Q +               L  +++  A  L+       +    L + 
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166

Query: 447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRI 506
            YN ++ G  R G   E   +L  +   G   D +++   +    +Q +    I+     
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226

Query: 507 RGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSN 564
                     +    LL     +  ++               P     + L+R +++ 
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 7e-11
 Identities = 73/613 (11%), Positives = 181/613 (29%), Gaps = 172/613 (28%)

Query: 53  FYRIREFGLKP--TVKIYNHILDALLAENR----FSMI----NPIYSNMKRDGMEPNVFT 102
              +++   K   + +  +HI+ +  A +     F  +      +      + +  N   
Sbjct: 35  CKDVQDM-PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN--- 90

Query: 103 YNILLKALCKNNRV-DGAYKLLVEMGNKGC------APDAVS----YTTIVSSICKLGQV 151
           Y  L+  +    R      ++ +E  ++        A   VS    Y  +  ++ +L   
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL--- 147

Query: 152 EEARELA---MRFGSGVSVYNALINGLCKEHKIEEA-----FWL---LCEMVDRGIDPNV 200
             A+ +    +  GSG +    +   +C  +K++       FWL    C   +  ++   
Sbjct: 148 RPAKNVLIDGV-LGSGKTW---VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 201 ITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEAS----- 255
                I  +     +  +++ +            IHS  + L+  LL  + +E       
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKL-----------RIHSIQAELR-RLLKSKPYENCLLVLL 251

Query: 256 DLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALID-- 313
           ++ N      F  +      L+       +  + V+       +      TT+ +L    
Sbjct: 252 NVQNAKAWNAFNLSC---KILL------TTRFKQVT-------DFLSAATTTHISLDHHS 295

Query: 314 -GFAKAGNL-LGASQIWNRMIS-----NGCSPNVVAYTCMVKVLCQN---------NMFH 357
                     L    +  R           +P  ++   ++    ++         ++  
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKHVNC 352

Query: 358 QAHSLIEKMAFENCPPNT--------VTF--NTFI--KGLCGCGRVDWA-------MKLL 398
              + I + +     P            F  +  I    L     + W        M ++
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS----LIWFDVIKSDVMVVV 408

Query: 399 DQMKQYECL---PNITTYNELLDGLLRV-----------NRVKEAFELVTEIEKCGIQLN 444
           +++ +Y  +   P  +T   +    L +             + + + +    +   +   
Sbjct: 409 NKLHKYSLVEKQPKESTI-SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 445 IVT---YNTILHGVCRAGMVVEAFQLLGKMLIE----GTKLDAITFNIIIYAYCKQGKVN 497
            +    Y+ I H +       E   L   + ++      K+   +      A+   G + 
Sbjct: 468 YLDQYFYSHIGHHLKNIEH-PERMTLFRMVFLDFRFLEQKIRHDS-----TAWNASGSIL 521

Query: 498 NAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIY-LQKMLNEGICPNFATWNV 556
           N +Q              +  Y      IC++    E  +  +   L     P       
Sbjct: 522 NTLQ-------------QLKFYKPY---ICDNDPKYERLVNAILDFL-----PKIEE--N 558

Query: 557 LVRSLFSNLGHLG 569
           L+ S +++L  + 
Sbjct: 559 LICSKYTDLLRIA 571

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-04
 Identities = 71/482 (14%), Positives = 130/482 (26%), Gaps = 154/482 (31%)

Query: 31  GVF-ISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFS--MINPI 87
            +F +++ N      + E   K+ Y+I       +    N  L     +      + +  
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242

Query: 88  YSNMKR-----DGMEPNVFTYNILLKAL---CKNNRVDGAYKLLVEMGNKGCAPDAVSYT 139
           Y   +           NV        A    C         K+L+    K       + T
Sbjct: 243 Y---ENCLLVLL----NVQNAKA-WNAFNLSC---------KILLTTRFKQVTDFLSAAT 285

Query: 140 TIVSSICKLGQV---EEARELAMRFGSGVSVYN-------------ALINGLCKEHKIEE 183
           T   S+         +E + L +++       +             ++I    ++     
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 184 AFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGC-------NPNIH 236
             W            N    +TII         E+SL +L     R          P+ H
Sbjct: 345 DNWK---------HVNCDKLTTII---------ESSLNVLEPAEYRKMFDRLSVFPPSAH 386

Query: 237 SFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQM 296
             T LL            S +W  +I+            ++       S+         +
Sbjct: 387 IPTILL------------SLIWFDVIKSD--------VMVVVNKLHKYSL---------V 417

Query: 297 EENSCPPNVTTYSALIDGFAKAGN-------LLGASQIWNRMISNGCSPNVV-AYTCMVK 348
           E+      ++  S  ++   K  N       ++    I     S+   P  +  Y     
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY--- 474

Query: 349 VLCQNNMFHQAHSL-----IEKMA-FENCPPNTVTFN-TFIKG--------LCGCGRVDW 393
                   H  H L      E+M  F       V  +  F++             G +  
Sbjct: 475 -------SHIGHHLKNIEHPERMTLFRM-----VFLDFRFLEQKIRHDSTAWNASGSI-- 520

Query: 394 AMKLLDQMKQYE--CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTI 451
            +  L Q+K Y+     N   Y  L++ +L        F     + K    L    Y  +
Sbjct: 521 -LNTLQQLKFYKPYICDNDPKYERLVNAILD-------F-----LPKIEENLICSKYTDL 567

Query: 452 LH 453
           L 
Sbjct: 568 LR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 29/204 (14%), Positives = 56/204 (27%), Gaps = 60/204 (29%)

Query: 392 DWAMKLLDQMKQYECL---PNITTYNELLDGLLRVNRVKEAF-----ELVTEIEKCGIQL 443
            +   L+  + + E          Y E  D L   N+V   +     +   ++ +  ++L
Sbjct: 92  KF---LMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 444 NIVTYNTILHGV------CRAGMVVEAFQLLGKMLIEGTKLDAITFNI--IIYAYCKQGK 495
                  ++ GV        A  V  ++++  KM           F I  +    C   +
Sbjct: 148 RPAKN-VLIDGVLGSGKTWVALDVCLSYKVQCKM----------DFKIFWLNLKNCNSPE 196

Query: 496 --VNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFAT 553
             +    +LL +I        D  S   L         +Q     L K            
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKL-----RIHSIQAELRRLLK------------ 239

Query: 554 WNVLVRSLFSNLGHLGPVYILDDI 577
                  L           +L ++
Sbjct: 240 SKPYENCLL----------VLLNV 253

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 35/265 (13%), Positives = 81/265 (30%), Gaps = 27/265 (10%)

Query: 287 DEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCM 346
           +EA  V     E     +V  Y A +              +    I    +P + A    
Sbjct: 20  NEAQRVKPSSPERDVERDVFLYRAYLA--------QRKYGVVLDEIKPSSAPELQAVRMF 71

Query: 347 VKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFI-KGLCGCGRVDWAMKLLDQMKQYE 405
            + L  ++      + +++    +      TF              D A++ L Q     
Sbjct: 72  AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD--- 128

Query: 406 CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCG-----IQLNIVTYNTILHGVCRAGM 460
              ++      +  LL+++R+  A + + +++         QL     + +  G  +   
Sbjct: 129 ---SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVS-LAAGGEKLQ- 183

Query: 461 VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYT 520
             +A+ +  + + +      +  N     +  QG+   A  +L         +P+ +   
Sbjct: 184 --DAYYIF-QEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL 240

Query: 521 SLLWGICNSGGMQEAFIYLQKMLNE 545
            +L      G   E        L +
Sbjct: 241 VVLSQH--LGKPPEVTNRYLSQLKD 263

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 53/395 (13%), Positives = 109/395 (27%), Gaps = 33/395 (8%)

Query: 168 YNALINGLCKEHKIEEAFWLLCEMVDRGIDPN-VITYSTIISSLCDVGNVETSLGILGQM 226
             +   G      ++    +LC+    G+ P  V+  ++       +  V+  L +L Q 
Sbjct: 75  IASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ- 131

Query: 227 FVRGCNPN-IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPN-VVAYSTLIHGLCSNG 284
              G  P  + +  S   G            +  +    G  P  VVA ++   G  +  
Sbjct: 132 -AHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAH--GLTPEQVVAIASNGGGKQALE 188

Query: 285 SMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPN-VVAY 343
           ++   +           P  V   ++   G      +     +  +    G +P  VVA 
Sbjct: 189 TVQRLLP-VLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPQQVVAI 245

Query: 344 TCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ 403
                         +   ++ + A    P   V   +   G      V   + +L Q   
Sbjct: 246 ASNGGGKQALETVQRLLPVLCQ-AHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHG 304

Query: 404 YECLPN-ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN---IVTYNTILHGVCRAG 459
               P  +        G   +  V+    ++ +       L    +V   +   G     
Sbjct: 305 LT--PQQVVAIASNGGGKQALETVQRLLPVLCQA----HGLTPQQVVAIASHDGGKQALE 358

Query: 460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDR-IRGGGEWNPD-II 517
            V     +L +     T    +              V   + +L +         P+ ++
Sbjct: 359 TVQRLLPVLCQ-AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH----GLTPEQVV 413

Query: 518 SYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA 552
           +  S   G      +Q     L +    G+ P   
Sbjct: 414 AIASHDGGKQALETVQRLLPVLCQAH--GLTPQQV 446

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	581
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.91
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.9
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.9
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.89
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.88
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.88
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.87
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.87
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.85
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.83
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.82
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.82
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.81
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.81
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.77
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.74
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.74
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.74
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.74
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.71
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.69
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.69
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.68
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.68
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.67
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.66
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.66
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.66
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.66
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.65
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.64
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.64
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.64
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.63
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.62
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.61
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.61
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.6
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.58
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.58
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.58
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.58
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.57
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.57
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.56
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.56
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.56
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.55
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.54
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.5
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.47
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.47
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.47
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.46
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.46
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.43
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.39
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.39
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.36
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.32
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.31
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.29
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.28
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.28
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.26
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.25
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.23
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.22
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.22
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.21
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.21
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.2
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.19
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.19
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.18
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.17
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.17
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.14
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.14
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.13
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.13
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.11
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.1
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.04
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.03
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.01
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.99
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.99
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.98
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.97
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.95
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.94
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.91
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.9
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.9
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.9
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.88
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.88
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.88
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.86
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.85
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.85
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.85
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.85
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.85
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.84
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.84
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.84
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.83
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.81
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.8
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.8
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.8
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.8
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.78
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.78
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.78
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.78
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.77
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.75
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.72
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.7
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.69
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.68
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.68
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.68
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.68
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.68
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.68
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.67
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.67
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.65
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.64
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.58
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.57
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.57
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.57
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.54
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.54
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.54
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.53
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.51
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.47
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.45
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.44
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.43
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.42
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.42
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.41
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.4
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.4
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.39
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.39
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.39
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.39
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.37
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.37
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.35
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.35
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.33
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.32
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.31
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.25
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.21
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.21
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.11
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.02
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.01
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.99
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.98
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.97
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.96
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.93
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.9
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.82
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.59
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.47
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.42
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.41
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.41
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.39
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.34
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.33
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.16
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.14
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.1
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.05
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.96
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.92
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.88
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.55
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.51
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.43
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.41
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.34
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.21
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.16
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.91
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.91
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.9
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.87
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.71
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.11
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.97
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.76
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.56
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.93
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.89
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.86
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.82
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.52
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.45
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.43
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.37
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.34
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.24
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	92.04
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.61
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.52
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.57
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.53
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	89.88
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	88.83
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	88.42
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	88.26
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	86.92
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	85.57
2p58_C	116	Putative type III secretion protein YSCG; type III	85.29
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	84.77
2p58_C	116	Putative type III secretion protein YSCG; type III	83.45
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	83.16
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	82.61
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	82.15
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	82.06
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	81.72

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-42  Score=345.33  Aligned_cols=500  Identities=13%  Similarity=0.010  Sum_probs=399.7

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 008022           41 RRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY  120 (581)
Q Consensus        41 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  120 (581)
                      ...|.+..+...+..+..    +++..|+.++..+.+.|++++|..+|+++...  .|+..++..++.+|.+.|++++|.
T Consensus        64 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~  137 (597)
T 2xpi_A           64 STDGSFLKERNAQNTDSL----SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK  137 (597)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccCccCCCCCccccchH----HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence            345555555555554432    67888999999999999999999999999864  567788888999999999999999


Q ss_pred             HHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh-CCC-------------------cchHHHHHHHHHhcCC
Q 008022          121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF-GSG-------------------VSVYNALINGLCKEHK  180 (581)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~-------------------~~~~~~l~~~~~~~~~  180 (581)
                      .+|+.+...  +++..++..++.+|.+.|++++|.++|++. +..                   ..+|+.++.+|.+.|+
T Consensus       138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  215 (597)
T 2xpi_A          138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN  215 (597)
T ss_dssp             HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence            999988653  568888999999999999999999999965 433                   6789999999999999


Q ss_pred             hhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHH--HH-HHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHH
Q 008022          181 IEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSL--GI-LGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDL  257 (581)
Q Consensus       181 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  257 (581)
                      +++|.++|+++.+.+.. +...+..+...+...+..+.+.  .+ +..+...+..+...+++.++..|.+.|++++|.++
T Consensus       216 ~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~  294 (597)
T 2xpi_A          216 FDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY  294 (597)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence            99999999999886422 4445555554444333222211  11 33444433333455566667888899999999999


Q ss_pred             HHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008022          258 WNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCS  337 (581)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  337 (581)
                      |+++.+.  +++..++..++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.... +
T Consensus       295 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~  370 (597)
T 2xpi_A          295 LSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-P  370 (597)
T ss_dssp             HHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-c
Confidence            9998876  5788999999999999999999999999998765 4577889999999999999999999999998654 3


Q ss_pred             CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 008022          338 PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELL  417 (581)
Q Consensus       338 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  417 (581)
                      .+..++..++..|.+.|++++|..+|+++.... +.+..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..++
T Consensus       371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~  448 (597)
T 2xpi_A          371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG  448 (597)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence            478889999999999999999999999998764 5678899999999999999999999999998765 45788999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHH
Q 008022          418 DGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----GTKLD--AITFNIIIYAYC  491 (581)
Q Consensus       418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~  491 (581)
                      .+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++++++.+.    +..|+  ..+|..++.+|.
T Consensus       449 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~  527 (597)
T 2xpi_A          449 MQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR  527 (597)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence            99999999999999999998874 567889999999999999999999999999876    55666  789999999999


Q ss_pred             hcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHH
Q 008022          492 KQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSL  561 (581)
Q Consensus       492 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~  561 (581)
                      +.|++++|++.++++.+   ..| +..+|..++.+|...|++++|.++|+++++.  .|+ ...+..+..+|
T Consensus       528 ~~g~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          528 KLKMYDAAIDALNQGLL---LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL  594 (597)
T ss_dssp             HTTCHHHHHHHHHHHHH---HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence            99999999999999987   345 7889999999999999999999999999884  555 44555444433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.4e-42  Score=343.21  Aligned_cols=485  Identities=12%  Similarity=0.026  Sum_probs=416.2

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHH
Q 008022           27 SCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNIL  106 (581)
Q Consensus        27 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  106 (581)
                      .++...|..++..|.+.|++++|+.+|+++....  |+..++..++.++.+.|++++|..+|+.+...  +++..+++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l  156 (597)
T 2xpi_A           81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT--GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA  156 (597)
T ss_dssp             -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC--CCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence            3577889999999999999999999999998643  67788999999999999999999999998654  6889999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHhhC---------------CCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcch
Q 008022          107 LKALCKNNRVDGAYKLLVEMGNK---------------GCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSV  167 (581)
Q Consensus       107 ~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~  167 (581)
                      +.+|.+.|++++|.++|+++...               +.+++..+|..++.+|.+.|++++|++.|+++    |.+...
T Consensus       157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  236 (597)
T 2xpi_A          157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEA  236 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHH
Confidence            99999999999999999953322               22335778999999999999999999999998    566667


Q ss_pred             HHHHHHHHHhcCChhHHHH--H-HHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 008022          168 YNALINGLCKEHKIEEAFW--L-LCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKG  244 (581)
Q Consensus       168 ~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  244 (581)
                      +..+...+...+..+.+..  + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+.  +++..++..++..
T Consensus       237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~  314 (597)
T 2xpi_A          237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT  314 (597)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence            7777665554433332221  1 444554444445566777788899999999999999998876  5789999999999


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHH
Q 008022          245 YLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGA  324 (581)
Q Consensus       245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  324 (581)
                      |.+.|++++|.++|+++.+.+.. +..++..++.++.+.|++++|..++..+.+.. +.+..++..++..|.+.|++++|
T Consensus       315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A  392 (597)
T 2xpi_A          315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA  392 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999987533 77789999999999999999999999998653 66889999999999999999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC
Q 008022          325 SQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY  404 (581)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  404 (581)
                      .++|+++.+..+ .+..++..++.++.+.|++++|..+|+++...+ +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus       393 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  470 (597)
T 2xpi_A          393 RRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL  470 (597)
T ss_dssp             HHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999987643 367799999999999999999999999998875 678899999999999999999999999999876


Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCccc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 008022          405 ECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC----GIQLN--IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL  478 (581)
Q Consensus       405 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  478 (581)
                      . +.+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.+.++++.+.+ +.
T Consensus       471 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~  548 (597)
T 2xpi_A          471 F-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN  548 (597)
T ss_dssp             C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred             C-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence            5 457889999999999999999999999999876    55676  7899999999999999999999999999875 55


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHH
Q 008022          479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGI  526 (581)
Q Consensus       479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~  526 (581)
                      +..+|..++.+|.+.|++++|.+.++++.+   +.| +...+..+..+|
T Consensus       549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          549 DANVHTAIALVYLHKKIPGLAITHLHESLA---ISPNEIMASDLLKRAL  594 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCChHHHHHHHHHH
Confidence            889999999999999999999999999998   567 566676666554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=3.5e-29  Score=236.54  Aligned_cols=381  Identities=15%  Similarity=0.085  Sum_probs=312.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCC
Q 008022          171 LINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGR  250 (581)
Q Consensus       171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  250 (581)
                      +...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...+...|+
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence            3455677888888888888877763 2244556666777888888999888888887764 4567788888888999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 008022          251 THEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNR  330 (581)
Q Consensus       251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  330 (581)
                      +++|++.|+++.+.. +.+..++..+..++...|++++|...+.++.+.. |.+...+..+...+...|++++|...|++
T Consensus        83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  160 (388)
T 1w3b_A           83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999999888763 2245668888889999999999999998888764 44566777888888889999999999999


Q ss_pred             HHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh
Q 008022          331 MISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI  410 (581)
Q Consensus       331 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  410 (581)
                      +....+ .+..++..+...+...|++++|...++++.... |.+...+..+...+...|++++|...+++..... +.+.
T Consensus       161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~  237 (388)
T 1w3b_A          161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA  237 (388)
T ss_dssp             HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred             HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCH
Confidence            887643 256788888899999999999999999998875 6677888889999999999999999999887754 3356


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022          411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY  490 (581)
Q Consensus       411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  490 (581)
                      .++..+...+...|++++|.+.++++.+.+ +.+..++..+...+.+.|++++|.+.++++++.. +.+..++..++..+
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  315 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence            788889999999999999999999998864 4567788999999999999999999999999874 66888999999999


Q ss_pred             HhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcc
Q 008022          491 CKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSLFSNL  565 (581)
Q Consensus       491 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g  565 (581)
                      ...|++++|++.++++.+   ..| +..++..++.++.+.|++++|...|+++++.  .|+ ...+..+...+...|
T Consensus       316 ~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          316 REQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred             HHcCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence            999999999999999988   445 5778999999999999999999999999873  554 566777777666544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=5e-29  Score=235.41  Aligned_cols=375  Identities=15%  Similarity=0.114  Sum_probs=271.3

Q ss_pred             HHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHH
Q 008022          144 SICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETS  219 (581)
Q Consensus       144 ~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  219 (581)
                      .+.+.|++++|.+.+.++    |.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|++++|
T Consensus         8 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A   86 (388)
T 1w3b_A            8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence            344445555555544443    3444444555555566666666666666655542 33555666666677777777777


Q ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 008022          220 LGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN  299 (581)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  299 (581)
                      ...|+++.+.. +.+..++..+...+...|++++|.+.|+++.+..+. +...+..+...+...|++++|...+.++.+.
T Consensus        87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  164 (388)
T 1w3b_A           87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            77777666552 223445666677777777777777777776665321 3344566666677777777777777777665


Q ss_pred             CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHH
Q 008022          300 SCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFN  379 (581)
Q Consensus       300 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  379 (581)
                      . |.+..++..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++..... |.+..++.
T Consensus       165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  241 (388)
T 1w3b_A          165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG  241 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence            3 445677777777788888888888888887776432 45677777888888888888888888877664 55677888


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC
Q 008022          380 TFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG  459 (581)
Q Consensus       380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  459 (581)
                      .+..++...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+...+...|
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  319 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence            88888888999999999998888765 3356678888889999999999999999988874 667888899999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccC
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSG  530 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g  530 (581)
                      ++++|.+.++++.+.. +.+..++..++.+|.+.|++++|.+.++++.+   +.| +...|..++..+...|
T Consensus       320 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          320 NIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             CHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHhHHHHHHHcc
Confidence            9999999999998764 45678889999999999999999999999988   456 5667888877776655

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=3e-28  Score=232.44  Aligned_cols=186  Identities=15%  Similarity=0.162  Sum_probs=117.6

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCcccHHH
Q 008022          377 TFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNR---------VKEAFELVTEIEKCGIQLNIVT  447 (581)
Q Consensus       377 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~  447 (581)
                      .++.+|++|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.+.         .++|.++|++|...|+.||..+
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            3455555666666666666666666555556666666666655554332         4556666666666666666666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHH
Q 008022          448 YNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGIC  527 (581)
Q Consensus       448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~  527 (581)
                      |+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ .|+.||..+|+.|+.+|+
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHh
Confidence            6666666666666666666666666666666666666666666666666666666666666 456666666666666666


Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 008022          528 NSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFS  563 (581)
Q Consensus       528 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  563 (581)
                      +.|++++|.+++++|.+.|..|+..||..+...+..
T Consensus       187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            666666666666666666666666666666555543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=4.4e-28  Score=231.33  Aligned_cols=185  Identities=16%  Similarity=0.257  Sum_probs=99.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC---------hhHHHHHHHHHhhCCCCCChhhH
Q 008022          308 YSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM---------FHQAHSLIEKMAFENCPPNTVTF  378 (581)
Q Consensus       308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~  378 (581)
                      ++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.+.         .+.|.++|++|...|+.||..+|
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            344444444444444444444444444444444444444444443322         34455555555555555555555


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Q 008022          379 NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA  458 (581)
Q Consensus       379 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  458 (581)
                      +.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~  188 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT  188 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008022          459 GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK  492 (581)
Q Consensus       459 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  492 (581)
                      |+.++|.+++++|.+.+..|+..||+.++..+..
T Consensus       189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            5555555555555555555555555555554443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.1e-26  Score=222.86  Aligned_cols=273  Identities=13%  Similarity=-0.026  Sum_probs=203.0

Q ss_pred             HHhHHHHHHHHHh---cCChhhHHHHHHHHHh-----CC-C-------CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008022          270 VVAYSTLIHGLCS---NGSMDEAVSVSYQMEE-----NS-C-------PPNVTTYSALIDGFAKAGNLLGASQIWNRMIS  333 (581)
Q Consensus       270 ~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~-~-------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  333 (581)
                      ...+......+..   .|++++|...+.++.+     .. .       +.+...+..+...+...|++++|...++++..
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~  265 (514)
T 2gw1_A          186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE  265 (514)
T ss_dssp             HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3334444444443   6778888888887776     21 1       22355677777788888888888888888877


Q ss_pred             CCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhH
Q 008022          334 NGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTY  413 (581)
Q Consensus       334 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  413 (581)
                      ..+.  ...+..+..++...|++++|...++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+
T Consensus       266 ~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  341 (514)
T 2gw1_A          266 LFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPY  341 (514)
T ss_dssp             HCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHH
T ss_pred             hCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHH
Confidence            6433  6677778888888888888888888887764 5567778888888888888888888888887765 3356677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHH
Q 008022          414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK-LD----AITFNIIIY  488 (581)
Q Consensus       414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~  488 (581)
                      ..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++...... ++    ...+..++.
T Consensus       342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~  420 (514)
T 2gw1_A          342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT  420 (514)
T ss_dssp             HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            778888888888888888888887763 446677788888888888888888888888765211 11    337888888


Q ss_pred             HHHh---cCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022          489 AYCK---QGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA  552 (581)
Q Consensus       489 ~~~~---~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  552 (581)
                      ++..   .|++++|.+.++++..   ..| +..++..++.+|...|++++|...|+++.+.  .|+..
T Consensus       421 ~~~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~  483 (514)
T 2gw1_A          421 LLTRNPTVENFIEATNLLEKASK---LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL--ARTME  483 (514)
T ss_dssp             HHHTSCCTTHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSHH
T ss_pred             HHhhhhhcCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--ccccH
Confidence            8888   8888888888888877   345 5667888888888888888888888888874  45543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.8e-25  Score=217.68  Aligned_cols=453  Identities=11%  Similarity=-0.030  Sum_probs=323.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022           29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK  108 (581)
Q Consensus        29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (581)
                      ....+...+..+.+.|++++|+..|+++...+  |++..|..+..++.+.|++++|...++.+.+.+ +.+...+..+..
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~   81 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence            45678888999999999999999999999866  688999999999999999999999999998876 567788999999


Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHH
Q 008022          109 ALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLL  188 (581)
Q Consensus       109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  188 (581)
                      ++...|++++|...|+.+...+. ++......++..+........+.+.+..+......-+. +......          
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~----------  149 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTE-LSTQPAK----------  149 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccCChhh----------
Confidence            99999999999999999988753 34444444444333322222222211111000000000 0000000          


Q ss_pred             HHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHc---cCCHHHHHHHHHHHHh--
Q 008022          189 CEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLL---GGRTHEASDLWNRMIR--  263 (581)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~--  263 (581)
                      .........|+......    +..........      .....+.+...+......+..   .|++++|...++++.+  
T Consensus       150 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  219 (514)
T 2gw1_A          150 ERKDKQENLPSVTSMAS----FFGIFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLF  219 (514)
T ss_dssp             -------CCCCHHHHHH----HHTTSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCchhHHHHH----HHhhcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHh
Confidence            00000001111111111    11000000000      000001123334444444444   7889999999988877  


Q ss_pred             ---CCC--------CCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          264 ---EGF--------LPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMI  332 (581)
Q Consensus       264 ---~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  332 (581)
                         ...        +.+...+..+...+...|++++|...++.+.+....  ...+..+...+...|++++|...++++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~  297 (514)
T 2gw1_A          220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKAL  297 (514)
T ss_dssp             HHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred             hhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence               311        123456778888899999999999999998876533  8888889999999999999999999998


Q ss_pred             hCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhh
Q 008022          333 SNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITT  412 (581)
Q Consensus       333 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  412 (581)
                      ...+ .+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++.+.+.. +.+...
T Consensus       298 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  374 (514)
T 2gw1_A          298 KLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEV  374 (514)
T ss_dssp             TTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHH
T ss_pred             hcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHH
Confidence            8643 366788889999999999999999999998875 5677888999999999999999999999987754 345678


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCcCHHHH
Q 008022          413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLN------IVTYNTILHGVCR---AGMVVEAFQLLGKMLIEGTKLDAITF  483 (581)
Q Consensus       413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~  483 (581)
                      +..+...+...|++++|...++.+.+.. +.+      ...+..+...+..   .|++++|.+.++++.... +.+..++
T Consensus       375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~  452 (514)
T 2gw1_A          375 PNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAK  452 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHH
Confidence            8889999999999999999999987652 112      3378888999999   999999999999999875 5578889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH
Q 008022          484 NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDI  516 (581)
Q Consensus       484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~  516 (581)
                      ..++.+|...|++++|.+.++++.+   +.|+.
T Consensus       453 ~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~  482 (514)
T 2gw1_A          453 IGLAQMKLQQEDIDEAITLFEESAD---LARTM  482 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH---HCSSH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHH---hcccc
Confidence            9999999999999999999999998   55753

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.95  E-value=9.2e-25  Score=216.10  Aligned_cols=430  Identities=11%  Similarity=0.026  Sum_probs=216.5

Q ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHc
Q 008022           68 YNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK  147 (581)
Q Consensus        68 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  147 (581)
                      +......+.+.|++++|...|+++.+.. +.++..+..+..++...|++++|.+.++++.+.+ +.+..++..+..++..
T Consensus        28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~  105 (537)
T 3fp2_A           28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANES  105 (537)
T ss_dssp             HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence            3444444444455555555554444433 3344444444444445555555555555444432 1133344444444444


Q ss_pred             cCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCcccHHHHHHHHHccCChhHHHHHHHH
Q 008022          148 LGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRG--IDPNVITYSTIISSLCDVGNVETSLGILGQ  225 (581)
Q Consensus       148 ~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  225 (581)
                      .|++++|...++.+..++......+..+...+....|...++.+....  ..+........+..+....+.+.+...+..
T Consensus       106 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (537)
T 3fp2_A          106 LGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT  185 (537)
T ss_dssp             HTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCC
T ss_pred             cCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhh
Confidence            455555544444332222222222333334444455666666654431  011111122233334444444444333322


Q ss_pred             HHHcCCCCCcc-cHHHHHHHHHc--------cCCHHHHHHHHHHHHhCCCCCCH-------HhHHHHHHHHHhcCChhhH
Q 008022          226 MFVRGCNPNIH-SFTSLLKGYLL--------GGRTHEASDLWNRMIREGFLPNV-------VAYSTLIHGLCSNGSMDEA  289 (581)
Q Consensus       226 ~~~~~~~~~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a  289 (581)
                      ....  .+... ....+...+..        .|++++|..+++++.+..+. +.       .++..+...+...|++++|
T Consensus       186 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A  262 (537)
T 3fp2_A          186 SSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDA  262 (537)
T ss_dssp             CCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence            1111  11100 11222222211        23566777777776665322 21       2344455556666677777


Q ss_pred             HHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhC
Q 008022          290 VSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE  369 (581)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  369 (581)
                      ...+..+.+..  |+...+..+...+...|++++|...++++....+ .+..++..+...+...|++++|...+++....
T Consensus       263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  339 (537)
T 3fp2_A          263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL  339 (537)
T ss_dssp             HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            77776666643  3355666666666666777777777766665532 24556666666666667777777776666655


Q ss_pred             CCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----ccc
Q 008022          370 NCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGI-----QLN  444 (581)
Q Consensus       370 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~  444 (581)
                      . +.+...+..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+...     ...
T Consensus       340 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  417 (537)
T 3fp2_A          340 N-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG  417 (537)
T ss_dssp             C-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence            3 4445566666666666677777777766665543 33445566666666666777777766666654320     011


Q ss_pred             HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          445 IVTYNTILHGVCRA----------GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       445 ~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ...+......+...          |++++|...++++.... +.+..++..++.+|...|++++|.+.++++.+
T Consensus       418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            12233334455555          66677777776666653 34556666666667777777777777776666

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.94  E-value=1.9e-23  Score=206.65  Aligned_cols=430  Identities=13%  Similarity=0.030  Sum_probs=308.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022           29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK  108 (581)
Q Consensus        29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (581)
                      ....+..++..+.+.|++++|+..|+++....+ .++..+..+..++.+.|++++|...|+++.+.+ +.+...+..+..
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~  101 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence            345677778888888888888888888887654 567778888888888888888888888887765 556777778888


Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhC-------CCcchHHHHHHHHHhcCCh
Q 008022          109 ALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFG-------SGVSVYNALINGLCKEHKI  181 (581)
Q Consensus       109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~l~~~~~~~~~~  181 (581)
                      ++...|++++|...|+.+ ..  .|+  .....+..+...+....|...++..-       .........+..+....+.
T Consensus       102 ~~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS  176 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred             HHHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence            888888888888888633 22  122  11222334445555667777777661       1112223444455555665


Q ss_pred             hHHHHHHHHHHHCCCCCCcc-cHHHHHHHHHc--------cCChhHHHHHHHHHHHcCCCCC--------cccHHHHHHH
Q 008022          182 EEAFWLLCEMVDRGIDPNVI-TYSTIISSLCD--------VGNVETSLGILGQMFVRGCNPN--------IHSFTSLLKG  244 (581)
Q Consensus       182 ~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~  244 (581)
                      +.+...+......  .+... ....+...+..        .|++++|..+++++.+..  |+        ..++..+...
T Consensus       177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~  252 (537)
T 3fp2_A          177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIF  252 (537)
T ss_dssp             HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHH
Confidence            5555443322211  11111 22222222222        247888888888888763  33        2245666777


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHH
Q 008022          245 YLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGA  324 (581)
Q Consensus       245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  324 (581)
                      +...|++++|...++++.+.  .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...+...|++++|
T Consensus       253 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  329 (537)
T 3fp2_A          253 HFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA  329 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence            88899999999999999887  4557778888889999999999999999988764 55788899999999999999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC
Q 008022          325 SQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY  404 (581)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  404 (581)
                      ...++++....+. +...+..+..++...|++++|...++++.... +.+...+..+...+...|++++|...|+.+.+.
T Consensus       330 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  407 (537)
T 3fp2_A          330 KEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL  407 (537)
T ss_dssp             HHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            9999999886433 56788889999999999999999999998875 667788899999999999999999999998653


Q ss_pred             CCC-----CChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008022          405 ECL-----PNITTYNELLDGLLRV----------NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLG  469 (581)
Q Consensus       405 ~~~-----~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  469 (581)
                      ...     .....+......+...          |++++|...++.+.+.. +.+...+..+...+...|++++|.+.++
T Consensus       408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~  486 (537)
T 3fp2_A          408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE  486 (537)
T ss_dssp             HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            311     1112234445667777          99999999999999874 5577889999999999999999999999


Q ss_pred             HHHHCC
Q 008022          470 KMLIEG  475 (581)
Q Consensus       470 ~~~~~~  475 (581)
                      ++.+..
T Consensus       487 ~al~~~  492 (537)
T 3fp2_A          487 DSAILA  492 (537)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            999864

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=1.8e-23  Score=201.76  Aligned_cols=374  Identities=14%  Similarity=0.059  Sum_probs=246.2

Q ss_pred             CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 008022          162 GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSL  241 (581)
Q Consensus       162 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  241 (581)
                      |.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++.+.+ +.+..++..+
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  100 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR  100 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence            5556666777777777777777777777766652 2355666666677777777777777777776653 3345566666


Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 008022          242 LKGYLLGGRTHEASDLWNRMIREGFLPNV---VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKA  318 (581)
Q Consensus       242 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  318 (581)
                      ...|...|++++|.+.|+++.+.... +.   ..+..+...+..                       ..+......+...
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~  156 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS  156 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence            66677777777777777766665311 22   334433332110                       0112233446667


Q ss_pred             CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHH
Q 008022          319 GNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLL  398 (581)
Q Consensus       319 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  398 (581)
                      |++++|...++++....+ .+...+..+..++...|++++|...++++.... +.+..++..+..++...|++++|...|
T Consensus       157 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~  234 (450)
T 2y4t_A          157 GDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEV  234 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            777777777777766532 255666677777777777777777777776553 456677777777777777777777777


Q ss_pred             HHHhhCCCCCChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCccc----HHHHHHHHHHHHhcCCHH
Q 008022          399 DQMKQYECLPNITTYNEL------------LDGLLRVNRVKEAFELVTEIEKCGIQLN----IVTYNTILHGVCRAGMVV  462 (581)
Q Consensus       399 ~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~  462 (581)
                      +.+.... +.+...+..+            ...+...|++++|...|+.+.+.. +.+    ...+..+...+.+.|+++
T Consensus       235 ~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~  312 (450)
T 2y4t_A          235 RECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPV  312 (450)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHH
Confidence            7776543 2233333333            778888999999999999988753 222    346778888899999999


Q ss_pred             HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHH------------HHcc
Q 008022          463 EAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWG------------ICNS  529 (581)
Q Consensus       463 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~------------~~~~  529 (581)
                      +|...++++.... +.+..++..++.+|...|++++|.+.++++.+   +.| +...+..+..+            |...
T Consensus       313 ~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~l  388 (450)
T 2y4t_A          313 EAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE---HNENDQQIREGLEKAQRLLKQSQKRDYYKIL  388 (450)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGS
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHhhcccchhHHHHh
Confidence            9999999988764 45778899999999999999999999999988   556 45566666633            3333


Q ss_pred             C-----CHHHHHHHHHHH-HHcCCCCC----H-------HhHHHHHHHHHhccCCCChH
Q 008022          530 G-----GMQEAFIYLQKM-LNEGICPN----F-------ATWNVLVRSLFSNLGHLGPV  571 (581)
Q Consensus       530 g-----~~~~A~~~~~~~-~~~~~~~~----~-------~~~~~l~~~~~~~g~~~~a~  571 (581)
                      |     +.+++.+.|+++ ++.  .|+    .       ..+..+..++...|+.+.+.
T Consensus       389 g~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~  445 (450)
T 2y4t_A          389 GVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK  445 (450)
T ss_dssp             CSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred             CCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            4     567778888874 442  332    1       25566666776666655543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=2.5e-23  Score=200.83  Aligned_cols=357  Identities=12%  Similarity=0.045  Sum_probs=223.2

Q ss_pred             HHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHH
Q 008022          118 GAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVD  193 (581)
Q Consensus       118 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  193 (581)
                      .+...+.+.... .+.+...+..+...+.+.|++++|+..++++    |.+..++..+..++...|++++|...|+++.+
T Consensus        10 ~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           10 GVDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            334444544444 2335677888999999999999999999987    77888999999999999999999999999998


Q ss_pred             CCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC-c---ccHHHHHHH------------HHccCCHHHHHHH
Q 008022          194 RGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPN-I---HSFTSLLKG------------YLLGGRTHEASDL  257 (581)
Q Consensus       194 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~------------~~~~~~~~~a~~~  257 (581)
                      .+. .+..++..+..++...|++++|...|+++.+..  |+ .   ..+..+...            +...|++++|...
T Consensus        89 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~  165 (450)
T 2y4t_A           89 LKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF  165 (450)
T ss_dssp             HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            743 367788899999999999999999999998863  43 3   555555433            5555555666665


Q ss_pred             HHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 008022          258 WNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCS  337 (581)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  337 (581)
                      ++++.+.. +.+...+..+..+|...|++++|...+.++.+.. +.+..++..+...+...|++++|...++++....+.
T Consensus       166 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  243 (450)
T 2y4t_A          166 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD  243 (450)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            55555442 1244445555555555555555555555555432 334455555555555555555555555555443211


Q ss_pred             CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCC-----hhh
Q 008022          338 PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPN-----ITT  412 (581)
Q Consensus       338 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~  412 (581)
                       +...+..+...              .         .......+...+...|++++|...|+.+.+..  |+     ...
T Consensus       244 -~~~~~~~~~~~--------------~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~  297 (450)
T 2y4t_A          244 -HKRCFAHYKQV--------------K---------KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRS  297 (450)
T ss_dssp             -CHHHHHHHHHH--------------H---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHH
T ss_pred             -hHHHHHHHHHH--------------H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHH
Confidence             11112111000              0         00011122566667777777777777776543  33     235


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH---
Q 008022          413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA---  489 (581)
Q Consensus       413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---  489 (581)
                      +..+...+.+.|++++|+..++.+.+.. +.+...+..+..+|...|++++|...++++++.. +.+...+..+..+   
T Consensus       298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          298 KERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRL  375 (450)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHH
Confidence            6666777777777777777777776653 4456777777777777777777777777777653 3345555555532   


Q ss_pred             ---------HHhcC-----CHHHHHHHHHH-Hhc
Q 008022          490 ---------YCKQG-----KVNNAIQLLDR-IRG  508 (581)
Q Consensus       490 ---------~~~~g-----~~~~A~~~~~~-~~~  508 (581)
                               |...|     +.+++.+.+++ ..+
T Consensus       376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~  409 (450)
T 2y4t_A          376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ  409 (450)
T ss_dssp             HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH
T ss_pred             hhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence                     33334     55667777776 443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.91  E-value=2.4e-20  Score=174.11  Aligned_cols=326  Identities=13%  Similarity=0.050  Sum_probs=214.3

Q ss_pred             ccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHH
Q 008022          201 ITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGL  280 (581)
Q Consensus       201 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  280 (581)
                      ..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+... .+...+..+...+
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~   81 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHHHH
Confidence            344455555566666666666666655542 22345555555555566666666666655555421 1344455555555


Q ss_pred             HhcCChhhHHHHHHHHHhCCCC---CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChh
Q 008022          281 CSNGSMDEAVSVSYQMEENSCP---PNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFH  357 (581)
Q Consensus       281 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  357 (581)
                      ...|++++|...+..+.+.. +   .+...+..+.....                       ...+..+...+...|+++
T Consensus        82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~  137 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT  137 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred             HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence            55556666655555555432 1   12222222211100                       001122356677788888


Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          358 QAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIE  437 (581)
Q Consensus       358 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  437 (581)
                      +|...++++.... |.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.
T Consensus       138 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          138 AAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            8888888887764 5667778888888888888888888888887764 4466777888888888888888888888887


Q ss_pred             HcCCcccHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHHHHHH
Q 008022          438 KCGIQLNIVTYN------------TILHGVCRAGMVVEAFQLLGKMLIEGTKLDA----ITFNIIIYAYCKQGKVNNAIQ  501 (581)
Q Consensus       438 ~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~  501 (581)
                      +.. +.+...+.            .+...+.+.|++++|...++++..... .+.    ..+..++.++...|++++|++
T Consensus       216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~~~~~A~~  293 (359)
T 3ieg_A          216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDEKPVEAIR  293 (359)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            753 33333332            235668889999999999999988642 233    235567889999999999999


Q ss_pred             HHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHH
Q 008022          502 LLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSL  561 (581)
Q Consensus       502 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~  561 (581)
                      .++++.+   ..| +..++..++.++...|++++|...|+++++.  .|+ ...+..+..+.
T Consensus       294 ~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~  350 (359)
T 3ieg_A          294 ICSEVLQ---MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ  350 (359)
T ss_dssp             HHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHH---hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence            9999988   346 6778899999999999999999999999874  565 44444444443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.90  E-value=2.8e-20  Score=173.69  Aligned_cols=331  Identities=14%  Similarity=0.071  Sum_probs=233.3

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 008022          164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLK  243 (581)
Q Consensus       164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  243 (581)
                      ++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            34567888999999999999999999998874 3367788889999999999999999999999874 346788889999


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCH
Q 008022          244 GYLLGGRTHEASDLWNRMIREGFL--PNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNL  321 (581)
Q Consensus       244 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  321 (581)
                      .+...|++++|...++++.+....  .+...+..+...+.                       ...+......+...|++
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence            999999999999999999987320  13333433321100                       11122334455556666


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHH
Q 008022          322 LGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQM  401 (581)
Q Consensus       322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  401 (581)
                      ++|...++++.+..+ .+...+..+...+...|++++|...+++..... |.+...+..+...+...|++++|...++..
T Consensus       137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  214 (359)
T 3ieg_A          137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC  214 (359)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            666666666555432 244555555666666666666666666665543 445556666666666666666666666666


Q ss_pred             hhCCCCCChhhH------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH----HHHHHHHHHHHhcCCHHHHH
Q 008022          402 KQYECLPNITTY------------NELLDGLLRVNRVKEAFELVTEIEKCGIQLNI----VTYNTILHGVCRAGMVVEAF  465 (581)
Q Consensus       402 ~~~~~~~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~  465 (581)
                      .+.. +.+...+            ..+...+...|++++|...++.+.+.. +.+.    ..+..+...+...|++++|.
T Consensus       215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~  292 (359)
T 3ieg_A          215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI  292 (359)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence            5433 1122222            233666888999999999999988764 2233    23455778889999999999


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHH
Q 008022          466 QLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGIC  527 (581)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~  527 (581)
                      +.++++.... +.+..++..++.+|...|++++|.+.++++.+   +.| +...+..+..+..
T Consensus       293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE---HNENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCChHHHHHHHHHHH
Confidence            9999999874 45788999999999999999999999999998   557 4556666655543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.90  E-value=9.2e-19  Score=170.05  Aligned_cols=353  Identities=10%  Similarity=-0.015  Sum_probs=158.1

Q ss_pred             CcchHHHHHHHHHc----cCCHHHHHHHHHHh--CCCcchHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCcccH
Q 008022          134 DAVSYTTIVSSICK----LGQVEEARELAMRF--GSGVSVYNALINGLCK----EHKIEEAFWLLCEMVDRGIDPNVITY  203 (581)
Q Consensus       134 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  203 (581)
                      ++.....+...|..    .+++++|...+++.  ..+...+..|...|..    .+++++|..+|++..+.|   ++..+
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~  114 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ  114 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            44444445455544    45555555555544  3334444444444444    455555555555544432   33334


Q ss_pred             HHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHhHHH
Q 008022          204 STIISSLCD----VGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLL----GGRTHEASDLWNRMIREGFLPNVVAYST  275 (581)
Q Consensus       204 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  275 (581)
                      ..+...|..    .+++++|..+|++..+.|   +...+..+...|..    .++.++|.+.|++..+.+   +...+..
T Consensus       115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~  188 (490)
T 2xm6_A          115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ  188 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            444444444    444555555555444433   23334444444443    344444444444444432   3334444


Q ss_pred             HHHHHHh----cCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 008022          276 LIHGLCS----NGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLC  351 (581)
Q Consensus       276 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  351 (581)
                      +...|..    .++.++|...+++..+.+   ++..+..+...|...                               ..
T Consensus       189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g-------------------------------~g  234 (490)
T 2xm6_A          189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG-------------------------------IG  234 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT-------------------------------SS
T ss_pred             HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC-------------------------------CC
Confidence            4444444    444444444444444432   233334444444330                               00


Q ss_pred             ccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhc----CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----
Q 008022          352 QNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCG----CGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRV----  423 (581)
Q Consensus       352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  423 (581)
                      ..+++++|..++++....+   ++..+..+...|..    .+++++|...|++..+.+   +...+..+...|...    
T Consensus       235 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~  308 (490)
T 2xm6_A          235 VTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGV  308 (490)
T ss_dssp             SCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTB
T ss_pred             CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCC
Confidence            1444455555554444332   22333333333433    445555555555544432   223333444444443    


Q ss_pred             -CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCC
Q 008022          424 -NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG---MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK----QGK  495 (581)
Q Consensus       424 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~  495 (581)
                       +++++|...++...+.+   +...+..+...|...|   ++++|.+++++..+.+   ++..+..+...|..    .++
T Consensus       309 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~  382 (490)
T 2xm6_A          309 AKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKD  382 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence             45555555555554433   2233334444444433   4455555555555432   34444455555554    455


Q ss_pred             HHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHHc
Q 008022          496 VNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN----SGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       496 ~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~  545 (581)
                      +++|.++++++.+.    .++..+..++..|..    .+++++|...|+++.+.
T Consensus       383 ~~~A~~~~~~A~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  432 (490)
T 2xm6_A          383 EQQAAIWMRKAAEQ----GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN  432 (490)
T ss_dssp             HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            55555555555441    133444445555544    45555555555555443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.89  E-value=3.6e-18  Score=165.84  Aligned_cols=361  Identities=13%  Similarity=0.033  Sum_probs=291.5

Q ss_pred             HHHHHHHHHCCCCCCcccHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHc----cCCHHHHHH
Q 008022          185 FWLLCEMVDRGIDPNVITYSTIISSLCD----VGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLL----GGRTHEASD  256 (581)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~  256 (581)
                      +..+....+.|   ++..+..+...|..    .+++++|..+|++..+.|   +...+..+...|..    .++.++|.+
T Consensus        27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~  100 (490)
T 2xm6_A           27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI  100 (490)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence            44444444432   55666666777766    788888888888887764   56677777777877    788888888


Q ss_pred             HHHHHHhCCCCCCHHhHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cCCHHHHHHHH
Q 008022          257 LWNRMIREGFLPNVVAYSTLIHGLCS----NGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK----AGNLLGASQIW  328 (581)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~  328 (581)
                      .|++..+.+   +...+..|...|..    .+++++|...|++..+.+   ++..+..+...|..    .+++++|...|
T Consensus       101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  174 (490)
T 2xm6_A          101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWY  174 (490)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            888888764   56666777777877    778899999999888765   56677778888876    78899999999


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhc----CCChHHHHHHHHH
Q 008022          329 NRMISNGCSPNVVAYTCMVKVLCQ----NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCG----CGRVDWAMKLLDQ  400 (581)
Q Consensus       329 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~  400 (581)
                      ++..+.+   +...+..+...|..    .+++++|..++++....+   ++..+..+...|..    .+++++|...|++
T Consensus       175 ~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~  248 (490)
T 2xm6_A          175 SKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQ  248 (490)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            9988864   67778888888887    789999999999988764   56677777777775    7899999999999


Q ss_pred             HhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc-----CCHHHHHHHHHHH
Q 008022          401 MKQYECLPNITTYNELLDGLLR----VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA-----GMVVEAFQLLGKM  471 (581)
Q Consensus       401 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~  471 (581)
                      ..+.+   +...+..+...|..    .+++++|+..|+...+.|   +...+..+...|...     +++++|...+++.
T Consensus       249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a  322 (490)
T 2xm6_A          249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS  322 (490)
T ss_dssp             HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred             HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence            98764   45666777777877    899999999999998765   556777788888877     8999999999999


Q ss_pred             HHCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHH
Q 008022          472 LIEGTKLDAITFNIIIYAYCKQG---KVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN----SGGMQEAFIYLQKMLN  544 (581)
Q Consensus       472 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  544 (581)
                      .+.+   +...+..+...|...|   ++++|+++++++.+.    .++..+..++..|..    .+++++|+.+|+++.+
T Consensus       323 ~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~  395 (490)
T 2xm6_A          323 AEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE  395 (490)
T ss_dssp             HHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence            9865   5677888999988867   899999999999982    467889999999998    8999999999999998


Q ss_pred             cCCCCCHHhHHHHHHHHHh----ccCCCChHHHHHHHhh
Q 008022          545 EGICPNFATWNVLVRSLFS----NLGHLGPVYILDDIMA  579 (581)
Q Consensus       545 ~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~  579 (581)
                      .|   +...+..+...+..    .++.++|.+++++.++
T Consensus       396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  431 (490)
T 2xm6_A          396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTAST  431 (490)
T ss_dssp             TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            64   56677788888887    7899999999998775

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.89  E-value=7.2e-20  Score=168.70  Aligned_cols=283  Identities=12%  Similarity=-0.007  Sum_probs=129.8

Q ss_pred             CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHH
Q 008022          234 NIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALID  313 (581)
Q Consensus       234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  313 (581)
                      +...+..+...+...|++++|.++++++.+..+ .+...+..++..+...|++++|...+.++.+.. +.+...+..+..
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   98 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC   98 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence            334444444444455555555555555444321 122333334444444555555555555444432 223344444444


Q ss_pred             HHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChH
Q 008022          314 GFAKAG-NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVD  392 (581)
Q Consensus       314 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  392 (581)
                      .+...| ++++|...++++....+. +...+..+...+...|++++|...+++..... +.+..                
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~----------------  160 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHL----------------  160 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSH----------------
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHH----------------
Confidence            444444 444455544444443211 23334444444444444444444444444332 22233                


Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          393 WAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKML  472 (581)
Q Consensus       393 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  472 (581)
                                         .+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|...++++.
T Consensus       161 -------------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  220 (330)
T 3hym_B          161 -------------------PMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL  220 (330)
T ss_dssp             -------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                               33334444444444444444444444432 3334444444555555555555555555544


Q ss_pred             HCC--------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022          473 IEG--------TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       473 ~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                      ...        .+....++..++.+|...|++++|++.++++.+   ..| +...+..++.++...|++++|...++++.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (330)
T 3hym_B          221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV---LIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL  297 (330)
T ss_dssp             HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred             HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---hCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            321        022234555555555555555555555555554   223 34455555555555555555555555555


Q ss_pred             HcCCCC-CHHhHHHHHHHH
Q 008022          544 NEGICP-NFATWNVLVRSL  561 (581)
Q Consensus       544 ~~~~~~-~~~~~~~l~~~~  561 (581)
                      +.  .| +...+..+..++
T Consensus       298 ~~--~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          298 GL--RRDDTFSVTMLGHCI  314 (330)
T ss_dssp             TT--CSCCHHHHHHHHHHH
T ss_pred             cc--CCCchHHHHHHHHHH
Confidence            42  23 333444444444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.89  E-value=3.6e-17  Score=165.80  Aligned_cols=280  Identities=12%  Similarity=0.092  Sum_probs=139.4

Q ss_pred             hcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 008022          112 KNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEM  191 (581)
Q Consensus       112 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  191 (581)
                      ..+++++|.++.++..      ++.+|..+..++...|++++|+..+.+. .+...|..++.++.+.|++++|.+.|...
T Consensus      1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA-dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred             HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444555555544331      3445555555555555555555555443 44445555555555555555555555544


Q ss_pred             HHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 008022          192 VDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVV  271 (581)
Q Consensus       192 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  271 (581)
                      .+..  +++...+.++.+|++.++++......    +   .++...+..+...|...|++++|..+|...         .
T Consensus      1161 rk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ 1222 (1630)
T 1xi4_A         1161 RKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 1222 (1630)
T ss_pred             Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------h
Confidence            4432  22222223555555555554322221    1   223344444555555555555555555543         2


Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 008022          272 AYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLC  351 (581)
Q Consensus       272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  351 (581)
                      .|..+..++.+.|++++|.+.+++.      .+..+|..+..+|...|++..|......+     ..++..+..++..|.
T Consensus      1223 ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe 1291 (1630)
T 1xi4_A         1223 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQ 1291 (1630)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHH
Confidence            4555555555555555555555443      13455555555555555555555444322     123444556666666


Q ss_pred             ccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcC--CChHHHHHHHHHHhhCCCC------CChhhHHHHHHHHHhc
Q 008022          352 QNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGC--GRVDWAMKLLDQMKQYECL------PNITTYNELLDGLLRV  423 (581)
Q Consensus       352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~  423 (581)
                      +.|.+++|+.+++...... +.....|+.+..+|++.  ++..++.+.|..-..  ++      .+...|..++..|.+.
T Consensus      1292 ~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A         1292 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKY 1368 (1630)
T ss_pred             HcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhc
Confidence            6666666666666655443 34444555555444443  233333333332211  11      1334566666666666


Q ss_pred             CCHHHHH
Q 008022          424 NRVKEAF  430 (581)
Q Consensus       424 ~~~~~a~  430 (581)
                      |+++.|.
T Consensus      1369 ~e~dnA~ 1375 (1630)
T 1xi4_A         1369 EEYDNAI 1375 (1630)
T ss_pred             ccHHHHH
Confidence            6666665

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=5.6e-20  Score=169.40  Aligned_cols=272  Identities=10%  Similarity=-0.045  Sum_probs=227.2

Q ss_pred             CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 008022          302 PPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTF  381 (581)
Q Consensus       302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  381 (581)
                      +.++..+......+...|++++|..+++++.+..+. +...+..++..+...|++++|...++++.... +.+...+..+
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   96 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV   96 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            445666777777888888888888888888776432 45566677788888899999999998888764 5677888888


Q ss_pred             HHHhhcCC-ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC
Q 008022          382 IKGLCGCG-RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM  460 (581)
Q Consensus       382 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  460 (581)
                      ...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence            89999999 9999999999998765 3456788899999999999999999999998874 4456777779999999999


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-------CCCCHHhHHHHHHHHHccCCHH
Q 008022          461 VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE-------WNPDIISYTSLLWGICNSGGMQ  533 (581)
Q Consensus       461 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~  533 (581)
                      +++|.+.++++.... +.+..++..++..+...|++++|...++++.+...       ......++..++.++...|+++
T Consensus       175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            999999999999875 55788999999999999999999999999876211       1234678999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          534 EAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       534 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      +|...++++++.. +.+...+..+..++...|++++|.+.++++++
T Consensus       254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            9999999998852 34567888999999999999999999998875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.88  E-value=1.1e-16  Score=162.21  Aligned_cols=420  Identities=11%  Similarity=0.111  Sum_probs=318.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHH
Q 008022           28 CSEGVFISVINSYRRVGLAEQALKMFYRIREFG--LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNI  105 (581)
Q Consensus        28 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  105 (581)
                      .+++-.....++|+..|++.+|+++++++.-.+  +..+...-+.++.+..+. +..+..++.+.+...    +   ...
T Consensus       983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A          983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred             cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence            466667778899999999999999999998421  224556667777777777 556666666655421    1   344


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHH
Q 008022          106 LLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAF  185 (581)
Q Consensus       106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  185 (581)
                      +...+...|.+++|..+|++...     .....+.+   +...|++++|.++.++. .++.+|..+..++...|++++|+
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv-n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC-NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCHHHHH
Confidence            77888899999999999999631     11222222   23788999999998887 55888999999999999999999


Q ss_pred             HHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 008022          186 WLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREG  265 (581)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  265 (581)
                      ..|.+.      -|...|..++..+.+.|++++|.+.+....+..  +++.....++.+|.+.+++++...+.    +  
T Consensus      1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A         1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred             HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence            999663      377888899999999999999999999888764  44444556889999999988644432    2  


Q ss_pred             CCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 008022          266 FLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTC  345 (581)
Q Consensus       266 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  345 (581)
                       .++...+..+...|...|++++|..+|...         ..|..+..++.+.|+++.|.+.+++.      .+..+|..
T Consensus      1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWke 1255 (1630)
T 1xi4_A         1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKE 1255 (1630)
T ss_pred             -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHH
Confidence             346677778999999999999999999874         47999999999999999999999876      36788999


Q ss_pred             HHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc--
Q 008022          346 MVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRV--  423 (581)
Q Consensus       346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  423 (581)
                      +..+|...|++..|......+     ..++..+..++..|.+.|.+++|+.+++...... +-....|..+...+.+.  
T Consensus      1256 v~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A         1256 VCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred             HHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCH
Confidence            999999999999998877642     4567778899999999999999999998887655 34455676676666653  


Q ss_pred             CCHHHHHHHHHHHHHcCCcc------cHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCCcCHHHHH
Q 008022          424 NRVKEAFELVTEIEKCGIQL------NIVTYNTILHGVCRAGMVVEAFQLL-------------GKMLIEGTKLDAITFN  484 (581)
Q Consensus       424 ~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~-------------~~~~~~~~~~~~~~~~  484 (581)
                      ++..++.+.|..-..  +++      +...|..++..|.+.|+++.|....             ...+.  -..++..|.
T Consensus      1330 eklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyy 1405 (1630)
T 1xi4_A         1330 QKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYY 1405 (1630)
T ss_pred             HHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHH
Confidence            344455555543222  222      4567889999999999999988322             22221  144777787


Q ss_pred             HHHHHHHhcC---------------CHHHHHHHHH
Q 008022          485 IIIYAYCKQG---------------KVNNAIQLLD  504 (581)
Q Consensus       485 ~l~~~~~~~g---------------~~~~A~~~~~  504 (581)
                      ..+..|...+               |++++.+++.
T Consensus      1406 kai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1406 RAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             HHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence            7777777666               7777777776

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.88  E-value=2.2e-18  Score=169.19  Aligned_cols=428  Identities=12%  Similarity=0.083  Sum_probs=278.8

Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh---CCC
Q 008022           88 YSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF---GSG  164 (581)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~  164 (581)
                      |++..+.. |.+...|..++.. .+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++.   .|+
T Consensus         2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~   78 (530)
T 2ooe_A            2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH   78 (530)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred             hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence            44444443 5577788888874 6788999999999998876 3345667888888888888888888888887   346


Q ss_pred             cchHHHHHHHH-HhcCChhHHHH----HHHHHHHC-CCCC-CcccHHHHHHHHHc---------cCChhHHHHHHHHHHH
Q 008022          165 VSVYNALINGL-CKEHKIEEAFW----LLCEMVDR-GIDP-NVITYSTIISSLCD---------VGNVETSLGILGQMFV  228 (581)
Q Consensus       165 ~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~  228 (581)
                      ...|..++... ...|+.+.|.+    +|+..... |..| +...|...+.....         .|+++.|..+|++..+
T Consensus        79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~  158 (530)
T 2ooe_A           79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV  158 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence            66676666533 34566666654    66655443 4433 34455555555443         5667777777777765


Q ss_pred             cCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHH------HhCC--
Q 008022          229 RGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQM------EENS--  300 (581)
Q Consensus       229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~--  300 (581)
                      .   |... ...+...|..   ++...             +..+...++.  ...+++..|..++...      .+..  
T Consensus       159 ~---P~~~-~~~~~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~  216 (530)
T 2ooe_A          159 N---PMIN-IEQLWRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAP  216 (530)
T ss_dssp             S---CCTT-HHHHHHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred             c---hhhh-HHHHHHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            2   2211 1111111110   00000             0000000110  0123445555554442      1111  


Q ss_pred             -CCCc--------HHhHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-------cCCh
Q 008022          301 -CPPN--------VTTYSALIDGFAKA----GNL----LGASQIWNRMISNGCSPNVVAYTCMVKVLCQ-------NNMF  356 (581)
Q Consensus       301 -~~~~--------~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~  356 (581)
                       ++|+        ...|...+......    ++.    ..+..+|+++....+ .+...|..++..+.+       .|++
T Consensus       217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~  295 (530)
T 2ooe_A          217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDM  295 (530)
T ss_dssp             CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccch
Confidence             2333        23444444332221    222    367778888877532 366777777777765       6887


Q ss_pred             h-------HHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCC-h-hhHHHHHHHHHhcCCHH
Q 008022          357 H-------QAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPN-I-TTYNELLDGLLRVNRVK  427 (581)
Q Consensus       357 ~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~  427 (581)
                      +       +|..++++....-.|.+...+..++..+.+.|++++|..+|+++.+..  |+ . ..|..++..+.+.|+++
T Consensus       296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~  373 (530)
T 2ooe_A          296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIK  373 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHH
Confidence            6       899999998863236678888889999999999999999999998853  43 2 47888888888899999


Q ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022          428 EAFELVTEIEKCGIQLNIVTYNTILHG-VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRI  506 (581)
Q Consensus       428 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  506 (581)
                      +|.++|+...+.. +.+...+...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|++++|..+|+++
T Consensus       374 ~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a  451 (530)
T 2ooe_A          374 SGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERV  451 (530)
T ss_dssp             HHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence            9999999998753 2233333332222 346899999999999998864 446788999999999999999999999999


Q ss_pred             hcCCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          507 RGGGEWNPD--IISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       507 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      ....+..|+  ...|...+......|+.+.+..+++++.+.
T Consensus       452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            885444443  447777788888889999999999998764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.87  E-value=3.1e-18  Score=168.16  Aligned_cols=414  Identities=9%  Similarity=0.033  Sum_probs=272.0

Q ss_pred             CcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 008022          134 DAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISS  209 (581)
Q Consensus       134 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  209 (581)
                      +...|..++. +...|++++|..+++++    |.+...|..++..+.+.|++++|..+|+++...  .|+...|...+..
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~   88 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSY   88 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHH
Confidence            5566777776 36677788888877776    666777777777777778888888888777765  3465556555542


Q ss_pred             H-HccCChhHHHH----HHHHHHHc-CCCC-CcccHHHHHHHHHc---------cCCHHHHHHHHHHHHhCCCCCCHHhH
Q 008022          210 L-CDVGNVETSLG----ILGQMFVR-GCNP-NIHSFTSLLKGYLL---------GGRTHEASDLWNRMIREGFLPNVVAY  273 (581)
Q Consensus       210 ~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~  273 (581)
                      . ...|+.+.|.+    +|+..... |..| +...|...+.....         .|+++.|..+|++.++....+....|
T Consensus        89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~  168 (530)
T 2ooe_A           89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW  168 (530)
T ss_dssp             HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred             HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence            2 34566665554    55554432 3332 34455555554433         46667777777776663111001122


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH------HhCC---CCCC-----
Q 008022          274 STLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRM------ISNG---CSPN-----  339 (581)
Q Consensus       274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~~~-----  339 (581)
                      ..........|. ..+.                   .++.  ...+++..|..++..+      .+..   ++|+     
T Consensus       169 ~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~  226 (530)
T 2ooe_A          169 RDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE  226 (530)
T ss_dssp             HHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred             HHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence            211111000010 0000                   0110  1233455666655542      2221   2333     


Q ss_pred             ---hhhHHHHHHHHHcc----CCh----hHHHHHHHHHhhCCCCCChhhHHHHHHHhhc-------CCChH-------HH
Q 008022          340 ---VVAYTCMVKVLCQN----NMF----HQAHSLIEKMAFENCPPNTVTFNTFIKGLCG-------CGRVD-------WA  394 (581)
Q Consensus       340 ---~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a  394 (581)
                         ...|...+......    ++.    ..+..+|++..... |.++..|...+..+..       .|+++       +|
T Consensus       227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A  305 (530)
T 2ooe_A          227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA  305 (530)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence               13444444332221    222    37778899888764 6778888888888775       79987       89


Q ss_pred             HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc-H-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          395 MKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN-I-VTYNTILHGVCRAGMVVEAFQLLGKML  472 (581)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~  472 (581)
                      ..+|++..+.-.+.+...|..++..+.+.|++++|..+|+.+.+.  +|+ . ..|..++..+.+.|++++|.++|++..
T Consensus       306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  383 (530)
T 2ooe_A          306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  383 (530)
T ss_dssp             HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999986322446778899999999999999999999999985  443 3 578888888889999999999999999


Q ss_pred             HCCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCC
Q 008022          473 IEGTKLDAITFNIIIYA-YCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEG-ICP  549 (581)
Q Consensus       473 ~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~  549 (581)
                      +.. +.+...+...+.. +...|++++|..+|+++.+   ..| ++..|..++..+.+.|+.++|..+|++++..+ ..|
T Consensus       384 ~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~---~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~  459 (530)
T 2ooe_A          384 EDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK---KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  459 (530)
T ss_dssp             TCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred             hcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHH---HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence            863 3344444443333 3468999999999999988   346 67889999999999999999999999998863 223


Q ss_pred             C--HHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          550 N--FATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       550 ~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      +  ...|...+......|+.+.+.++.+++++
T Consensus       460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          460 EKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2  34777777777888999999998888764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.87  E-value=6.8e-20  Score=171.67  Aligned_cols=264  Identities=14%  Similarity=0.002  Sum_probs=185.7

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHh
Q 008022          306 TTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGL  385 (581)
Q Consensus       306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  385 (581)
                      ..+..+...+...|++++|...++++.+..+ .+...+..+..++...|++++|...++++.... |.+..++..+..++
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~  142 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF  142 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            3344555555555555666655555555432 244455555555555666666666665555543 44555555555566


Q ss_pred             hcCCChHHHHHHHHHHhhCCCCCChhhHH----------------HHHHHHHhcCCHHHHHHHHHHHHHcCCcc--cHHH
Q 008022          386 CGCGRVDWAMKLLDQMKQYECLPNITTYN----------------ELLDGLLRVNRVKEAFELVTEIEKCGIQL--NIVT  447 (581)
Q Consensus       386 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~  447 (581)
                      ...|++++|...++.+...... +...+.                .+... ...|++++|...++++.+.. +.  +..+
T Consensus       143 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~~~-p~~~~~~~  219 (368)
T 1fch_A          143 TNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL-LSDSLFLEVKELFLAAVRLD-PTSIDPDV  219 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH-HHHHHHHHHHHHHHHHHHHS-TTSCCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH-hhcccHHHHHHHHHHHHHhC-cCcccHHH
Confidence            6666666666666655544311 111111                23333 38899999999999998864 33  5788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHH
Q 008022          448 YNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGI  526 (581)
Q Consensus       448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~  526 (581)
                      +..+...+...|++++|...+++++... +.+..++..++.++...|++++|++.++++.+   +.| +..++..++.+|
T Consensus       220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~  295 (368)
T 1fch_A          220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE---LQPGYIRSRYNLGISC  295 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHH
Confidence            8899999999999999999999998874 45678899999999999999999999999987   345 677899999999


Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCC-----------HHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          527 CNSGGMQEAFIYLQKMLNEGICPN-----------FATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       527 ~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      ...|++++|...|+++++.. +.+           ...+..+..++...|+.++|..+.++.++
T Consensus       296 ~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  358 (368)
T 1fch_A          296 INLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS  358 (368)
T ss_dssp             HHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence            99999999999999987642 112           57888999999999999999988876543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.85  E-value=2.3e-19  Score=167.99  Aligned_cols=307  Identities=11%  Similarity=-0.072  Sum_probs=195.2

Q ss_pred             HHHccCChhHHHH-HHHHHHHcCC---CCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC
Q 008022          209 SLCDVGNVETSLG-ILGQMFVRGC---NPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNG  284 (581)
Q Consensus       209 ~~~~~g~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  284 (581)
                      .+...|+++.|.. .+++......   ..+...+..+...+...|++++|...++++.+... .+..++..+..++...|
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCc
Confidence            3444566666665 5554443311   11234455566666666666666666666665532 24455566666666666


Q ss_pred             ChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 008022          285 SMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIE  364 (581)
Q Consensus       285 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  364 (581)
                      ++++|...+.++.+.. +.+..++..+...+...|++++|...++++....+. +...+..+...       ..      
T Consensus       113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------  177 (368)
T 1fch_A          113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------  177 (368)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred             CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence            6666666666665543 335555666666666666666666666666554321 11111100000       00      


Q ss_pred             HHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 008022          365 KMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLP-NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQL  443 (581)
Q Consensus       365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  443 (581)
                          .  ......+..+...+ ..|++++|...++++.+..... +...+..+...+...|++++|...++++.+.. +.
T Consensus       178 ----~--~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~  249 (368)
T 1fch_A          178 ----G--AGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN  249 (368)
T ss_dssp             --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             ----h--hcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence                0  00000111222333 7789999999999987754221 46788888999999999999999999988763 55


Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-C-------
Q 008022          444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-D-------  515 (581)
Q Consensus       444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~-------  515 (581)
                      +...+..+...+...|++++|...+++++... +.+..++..++.+|.+.|++++|...++++.+   +.| +       
T Consensus       250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~~~~~~~~~~~  325 (368)
T 1fch_A          250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN---MQRKSRGPRGEG  325 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHHTC------C
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCCCccccc
Confidence            67889999999999999999999999998874 45778899999999999999999999999876   233 2       


Q ss_pred             ----HHhHHHHHHHHHccCCHHHHHHHHHHHH
Q 008022          516 ----IISYTSLLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       516 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                          ..+|..++.+|...|++++|..++++.+
T Consensus       326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          326 GAMSENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             cchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence                5789999999999999999998877544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=2.5e-19  Score=167.50  Aligned_cols=258  Identities=13%  Similarity=-0.022  Sum_probs=142.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 008022          308 YSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCG  387 (581)
Q Consensus       308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  387 (581)
                      +..+...+.+.|++++|...|+++....+ .+...+..+..++...|++++|...++++.... |.+...+..+..+|..
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN  145 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence            44444444444555555555554444321 134444444555555555555555555544432 3344445555555555


Q ss_pred             CCChHHHHHHHHHHhhCCCCCC-----------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc--cHHHHHHHHHH
Q 008022          388 CGRVDWAMKLLDQMKQYECLPN-----------ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQL--NIVTYNTILHG  454 (581)
Q Consensus       388 ~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~  454 (581)
                      .|++++|...++++.+..  |+           ...+..+...+...|++++|...++++.+.. +.  +..++..+...
T Consensus       146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~  222 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVL  222 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHH
Confidence            555555555555554322  11           1122234556666677777777777766653 22  46666666777


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHH
Q 008022          455 VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQ  533 (581)
Q Consensus       455 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~  533 (581)
                      +...|++++|.+.+++++... +.+..++..++.+|...|++++|++.++++.+   +.| +..++..++.+|...|+++
T Consensus       223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE---IQPGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHCCCHH
Confidence            777777777777777776653 34566677777777777777777777777666   334 4566677777777777777


Q ss_pred             HHHHHHHHHHHcCCCC-------------CHHhHHHHHHHHHhccCCCChHHHHHH
Q 008022          534 EAFIYLQKMLNEGICP-------------NFATWNVLVRSLFSNLGHLGPVYILDD  576 (581)
Q Consensus       534 ~A~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~  576 (581)
                      +|...|+++++.  .|             +...+..+..++...|+.+.+.+..++
T Consensus       299 ~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          299 EAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            777777776542  12             245566666666666766666655544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=8.1e-19  Score=163.97  Aligned_cols=265  Identities=9%  Similarity=-0.090  Sum_probs=174.2

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 008022          273 YSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ  352 (581)
Q Consensus       273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  352 (581)
                      +..+...+.+.|++++|...++++.+.. |.+...+..+..++...|++++|...|+++.+..+ .+..++..+..++..
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTN  145 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHc
Confidence            4444444444444444444444444432 23444444555555555555555555555444321 134444555555555


Q ss_pred             cCChhHHHHHHHHHhhCCCCCC----------hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCC-CChhhHHHHHHHHH
Q 008022          353 NNMFHQAHSLIEKMAFENCPPN----------TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECL-PNITTYNELLDGLL  421 (581)
Q Consensus       353 ~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~  421 (581)
                      .|++++|...++++.... |.+          ...+..+...+...|++++|...++++.+.... ++...+..+...+.
T Consensus       146 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  224 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH  224 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence            555555555555554432 111          223344577888899999999999998776522 15778889999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 008022          422 RVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQ  501 (581)
Q Consensus       422 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  501 (581)
                      ..|++++|.+.++++.+.. +.+..++..+..+|...|++++|.+.+++++... +.+..++..++.+|...|++++|..
T Consensus       225 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~  302 (365)
T 4eqf_A          225 LSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVS  302 (365)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999998874 5678899999999999999999999999999874 4468889999999999999999999


Q ss_pred             HHHHHhcCCCCC----------CCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022          502 LLDRIRGGGEWN----------PDIISYTSLLWGICNSGGMQEAFIYLQKM  542 (581)
Q Consensus       502 ~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (581)
                      .++++.+..+-.          .+...|..+..++...|+.+.+..+.++.
T Consensus       303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  353 (365)
T 4eqf_A          303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD  353 (365)
T ss_dssp             HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred             HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence            999987622110          02568899999999999999888877653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.83  E-value=1.7e-18  Score=159.26  Aligned_cols=275  Identities=11%  Similarity=-0.047  Sum_probs=154.8

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 008022          272 AYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLC  351 (581)
Q Consensus       272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  351 (581)
                      .+..+...+...|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+..+ .+...+..+...+.
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~  100 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT  100 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHH
Confidence            34455555666666666666666655542 33555555566666666666666666666555422 24445555555556


Q ss_pred             ccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHH-HH-HHHhcCCHHHH
Q 008022          352 QNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNEL-LD-GLLRVNRVKEA  429 (581)
Q Consensus       352 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a  429 (581)
                      ..|++++|...++++.... +.+...+..+....                      |+......+ .. .+...|++++|
T Consensus       101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A  157 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYREC  157 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHH
Confidence            6666666666665555442 22222222220000                      000000011 11 24556666777


Q ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 008022          430 FELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGG  509 (581)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  509 (581)
                      .+.++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..++.++...|++++|++.++++.+ 
T Consensus       158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-  234 (327)
T 3cv0_A          158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD-  234 (327)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence            77777666553 3456666666667777777777777777766653 34566666777777777777777777777665 


Q ss_pred             CCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-------------HHhHHHHHHHHHhccCCCChHHHHH
Q 008022          510 GEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-------------FATWNVLVRSLFSNLGHLGPVYILD  575 (581)
Q Consensus       510 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~a~~~~~  575 (581)
                        ..| +..++..++.++...|++++|...++++.+.  .|+             ...+..+..++...|+.++|...++
T Consensus       235 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          235 --INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM--QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             --HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             --cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence              234 4556667777777777777777777776653  233             4556666667777777777766665


Q ss_pred             HHh
Q 008022          576 DIM  578 (581)
Q Consensus       576 ~~~  578 (581)
                      +.+
T Consensus       311 ~~l  313 (327)
T 3cv0_A          311 QNV  313 (327)
T ss_dssp             CCS
T ss_pred             HHH
Confidence            443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.82  E-value=1.6e-17  Score=161.23  Aligned_cols=296  Identities=9%  Similarity=-0.105  Sum_probs=133.6

Q ss_pred             ChhHHHHHHHHHHHcCCCCCcccHHHHHHH---HHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCChh
Q 008022          215 NVETSLGILGQMFVRGCNPNIHSFTSLLKG---YLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCS----NGSMD  287 (581)
Q Consensus       215 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~  287 (581)
                      ++++|...|++..+.. +.++..+..+..+   +...++.++|++.+++..+..+ .+...+..+...+..    .++.+
T Consensus       153 ~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~  230 (472)
T 4g1t_A          153 QNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEG  230 (472)
T ss_dssp             HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------C
T ss_pred             cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHH
Confidence            4555555555555442 1122222222222   2233444555555555554421 133333333333322    24455


Q ss_pred             hHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHh
Q 008022          288 EAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMA  367 (581)
Q Consensus       288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  367 (581)
                      +|.+.+++..... +.+...+..+...+...|++++|...+++..+..+. +..++..+..+|...+...         .
T Consensus       231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~---------~  299 (472)
T 4g1t_A          231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQV---------M  299 (472)
T ss_dssp             HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHH---------H
T ss_pred             HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHh---------h
Confidence            5666665555432 334555555666666666666666666665554221 3334444433332110000         0


Q ss_pred             hCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHH-
Q 008022          368 FENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIV-  446 (581)
Q Consensus       368 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-  446 (581)
                      ... .......      ....+.++.|...++...+.. +.+...+..+...+...|++++|.+.|++..+....+... 
T Consensus       300 ~~~-~~~~~~~------~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~  371 (472)
T 4g1t_A          300 NLR-ENGMYGK------RKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ  371 (472)
T ss_dssp             HC-------CH------HHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             hHH-HHHHHHH------HHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence            000 0000000      011123456666666665544 3344566667777777777777777777776653222211 


Q ss_pred             -HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          447 -TYNTILH-GVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       447 -~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                       .+..+.. .....|++++|+..|.+.++.  .|+.....         +....+.+++++..+   ..| ++.+|..++
T Consensus       372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~---~~p~~~~~~~~LG  437 (472)
T 4g1t_A          372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLS---KNGADSEALHVLA  437 (472)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHH---HCC-CTTHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence             1222222 233567777777777777764  33322211         122334455555554   234 566777777


Q ss_pred             HHHHccCCHHHHHHHHHHHHHc
Q 008022          524 WGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       524 ~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      .+|...|++++|++.|+++++.
T Consensus       438 ~~~~~~g~~~~A~~~y~kALe~  459 (472)
T 4g1t_A          438 FLQELNEKMQQADEDSERGLES  459 (472)
T ss_dssp             HHHHHHHHCC------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHhc
Confidence            7777777777888888777764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.82  E-value=1.1e-17  Score=151.63  Aligned_cols=239  Identities=13%  Similarity=0.137  Sum_probs=70.1

Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 008022           42 RVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYK  121 (581)
Q Consensus        42 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  121 (581)
                      +.|+.++|.++++++.      ++.+|..++.++.+.|++++|++.|.+      .+|...|..++..+...|++++|.+
T Consensus        15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence            5566777777777772      234777777777777777777777754      2455677777777777777777777


Q ss_pred             HHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcc
Q 008022          122 LLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVI  201 (581)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  201 (581)
                      .++..++.  .+++.+.+.++.+|.+.|+++++.++++.  ++..+|+.+...|...|.+++|...|..+         .
T Consensus        83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~  149 (449)
T 1b89_A           83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S  149 (449)
T ss_dssp             ----------------------------CHHHHTTTTTC--C----------------CTTTHHHHHHHT---------T
T ss_pred             HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence            66655553  33456667777777777777776665542  34446666666666666666666666544         2


Q ss_pred             cHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHH
Q 008022          202 TYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLC  281 (581)
Q Consensus       202 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  281 (581)
                      .|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+     ...+.....++..|.
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Ye  218 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQ  218 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHH
Confidence            4566666666666666666666655      14555666666666666666664433321     122222334555666


Q ss_pred             hcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh
Q 008022          282 SNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK  317 (581)
Q Consensus       282 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (581)
                      +.|.+++|..+++...... +.....|..+..+|++
T Consensus       219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k  253 (449)
T 1b89_A          219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK  253 (449)
T ss_dssp             HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence            6666666666666555443 3344445555444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.82  E-value=3.6e-18  Score=157.07  Aligned_cols=280  Identities=9%  Similarity=-0.073  Sum_probs=217.6

Q ss_pred             CcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHH
Q 008022          234 NIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALID  313 (581)
Q Consensus       234 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  313 (581)
                      +...+..+...+...|++++|..+++++.+... .+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence            456677888899999999999999999988743 367788889999999999999999999998864 557888999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHH--HhhcCCCh
Q 008022          314 GFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIK--GLCGCGRV  391 (581)
Q Consensus       314 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~  391 (581)
                      .+...|++++|...++++....+. +...+..+...                      .++......+..  .+...|++
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~  154 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY  154 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence            999999999999999999887432 22222222111                      011111122212  36677888


Q ss_pred             HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022          392 DWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKM  471 (581)
Q Consensus       392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  471 (581)
                      ++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++
T Consensus       155 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  232 (327)
T 3cv0_A          155 RECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA  232 (327)
T ss_dssp             HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88888888887654 3466778888888899999999999999888764 556788888899999999999999999998


Q ss_pred             HHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-------------HHhHHHHHHHHHccCCHHHHHHH
Q 008022          472 LIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-------------IISYTSLLWGICNSGGMQEAFIY  538 (581)
Q Consensus       472 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~  538 (581)
                      .... +.+..++..++.+|...|++++|.+.++++.+   ..|+             ..+|..++.++...|++++|..+
T Consensus       233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  308 (327)
T 3cv0_A          233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY---MQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELT  308 (327)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            8864 45678889999999999999999999999877   2343             66888999999999999999998


Q ss_pred             HHHHHH
Q 008022          539 LQKMLN  544 (581)
Q Consensus       539 ~~~~~~  544 (581)
                      +++.++
T Consensus       309 ~~~~l~  314 (327)
T 3cv0_A          309 YAQNVE  314 (327)
T ss_dssp             TTCCSH
T ss_pred             HHHHHH
Confidence            876543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.82  E-value=6.2e-18  Score=150.89  Aligned_cols=250  Identities=12%  Similarity=0.060  Sum_probs=108.0

Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHH
Q 008022          245 YLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGA  324 (581)
Q Consensus       245 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  324 (581)
                      ....|++..|+..++........+.......+.++|...|+++.|+..++.    ..+|+..++..+...+...++.++|
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A   84 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI   84 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence            334455555555554443321111112233344555555555555543322    1233444444455555555555555


Q ss_pred             HHHHHHHHhCCCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhh
Q 008022          325 SQIWNRMISNGCSP-NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ  403 (581)
Q Consensus       325 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  403 (581)
                      .+.++++...+..| +...+..+..++...|++++|+..+++      +.+...+..++..+.+.|++++|.+.|+.+.+
T Consensus        85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~  158 (291)
T 3mkr_A           85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD  158 (291)
T ss_dssp             HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            55555554443222 223333344445555555555555443      23444444444445555555555555555444


Q ss_pred             CCCCCChhhHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 008022          404 YECLPNITTYN---ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA  480 (581)
Q Consensus       404 ~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  480 (581)
                      ..  |+....+   ..+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.+++++... +.+.
T Consensus       159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~  234 (291)
T 3mkr_A          159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHP  234 (291)
T ss_dssp             HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence            32  2211110   1111222234444444444444443 23344444444444444444444444444444432 2244


Q ss_pred             HHHHHHHHHHHhcCCHHH-HHHHHHHHhc
Q 008022          481 ITFNIIIYAYCKQGKVNN-AIQLLDRIRG  508 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~  508 (581)
                      .++..++..+...|+.++ +.++++++.+
T Consensus       235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            444444444444444433 2344444444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.81  E-value=2.3e-17  Score=149.69  Aligned_cols=283  Identities=11%  Similarity=0.081  Sum_probs=127.0

Q ss_pred             hhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 008022            6 GEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMIN   85 (581)
Q Consensus         6 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~   85 (581)
                      -+.|++++|.+.++++.      .+.+|..++.++.+.|++++|++.|.+.      +++..|..++..+...|++++|.
T Consensus        14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            35678999999999882      3459999999999999999999999753      66779999999999999999999


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCc
Q 008022           86 PIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGV  165 (581)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  165 (581)
                      .+++...+.  .+++.+...++.+|.+.|++.++.++++       .|+..+|..+...|...|.+++|...|.++    
T Consensus        82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            988877764  4567889999999999999999988774       367789999999999999999999999987    


Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 008022          166 SVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGY  245 (581)
Q Consensus       166 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  245 (581)
                      ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+     ...+.....++..|
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Y  217 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYY  217 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHH
Confidence            58999999999999999999999988      27899999999999999999996654432     23344455788999


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCCC------cHHhHHHHHHHHHhc
Q 008022          246 LLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN-SCPP------NVTTYSALIDGFAKA  318 (581)
Q Consensus       246 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~  318 (581)
                      .+.|++++|+.+++...... +-....|.-+.-.|++- ++++..+.++..... ++||      +...|..+...|...
T Consensus       218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~  295 (449)
T 1b89_A          218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY  295 (449)
T ss_dssp             HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999998765 33556677776666655 334433333322221 2222      344566666666666


Q ss_pred             CCHHHHHH
Q 008022          319 GNLLGASQ  326 (581)
Q Consensus       319 ~~~~~a~~  326 (581)
                      ++++.|..
T Consensus       296 ~e~d~A~~  303 (449)
T 1b89_A          296 EEYDNAII  303 (449)
T ss_dssp             TCHHHHHH
T ss_pred             chHHHHHH
Confidence            66665554

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.81  E-value=1.7e-17  Score=148.06  Aligned_cols=275  Identities=11%  Similarity=0.034  Sum_probs=209.7

Q ss_pred             HHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh
Q 008022          277 IHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMF  356 (581)
Q Consensus       277 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  356 (581)
                      ++-....|++..|+..++........+.......+.++|...|+++.|...++.    .-+|+..++..+...+...++.
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~   81 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR   81 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence            344567899999998887765432111123456678899999999999876654    1345677888888899999999


Q ss_pred             hHHHHHHHHHhhCCC-CCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 008022          357 HQAHSLIEKMAFENC-PPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTE  435 (581)
Q Consensus       357 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  435 (581)
                      ++|+..++++...+. |.+...+..+...+...|++++|++.+++      +.+...+..++..+.+.|++++|.+.++.
T Consensus        82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~  155 (291)
T 3mkr_A           82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK  155 (291)
T ss_dssp             HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999887653 55667777788899999999999999876      46777888899999999999999999999


Q ss_pred             HHHcCCcccHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 008022          436 IEKCGIQLNIVTY---NTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW  512 (581)
Q Consensus       436 ~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  512 (581)
                      +.+..  |+....   ..++..+...|++++|..+|+++.+.. +.+...++.++.++.+.|++++|.+.++++.+   .
T Consensus       156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~---~  229 (291)
T 3mkr_A          156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALD---K  229 (291)
T ss_dssp             HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---H
T ss_pred             HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---h
Confidence            98864  443221   223344445689999999999999874 66888899999999999999999999999888   4


Q ss_pred             CC-CHHhHHHHHHHHHccCCHHH-HHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHH
Q 008022          513 NP-DIISYTSLLWGICNSGGMQE-AFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVY  572 (581)
Q Consensus       513 ~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  572 (581)
                      .| ++.++..++..+...|+.++ +.++++++++  +.|+......   ...+.+.++++..
T Consensus       230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~d---~~~~~~~fd~~~~  286 (291)
T 3mkr_A          230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIKE---YRAKENDFDRLVL  286 (291)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHH---HHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHHH---HHHHHHHHHHHHH
Confidence            56 67789999999999998876 5788999987  4676554333   2344444555543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.81  E-value=1.7e-16  Score=153.91  Aligned_cols=382  Identities=10%  Similarity=-0.086  Sum_probs=227.9

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHC-----C--CCC-CcccHHHHHHHHHccCChhHHHHHHHHHHHcC---C-
Q 008022          164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDR-----G--IDP-NVITYSTIISSLCDVGNVETSLGILGQMFVRG---C-  231 (581)
Q Consensus       164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~-  231 (581)
                      ....||.|...+...|++++|++.|++..+.     +  ..| ...+|..+..+|...|++++|...+++..+..   . 
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3556788888888888888888888776442     1  112 34567777788888888888888887765421   0 


Q ss_pred             --CC-CcccHHHHHHHHH--ccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHH---HHhcCChhhHHHHHHHHHhCCCCC
Q 008022          232 --NP-NIHSFTSLLKGYL--LGGRTHEASDLWNRMIREGFLPNVVAYSTLIHG---LCSNGSMDEAVSVSYQMEENSCPP  303 (581)
Q Consensus       232 --~~-~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~  303 (581)
                        .+ ...++.....++.  ..+++++|++.|++..+..+. ++..+..+..+   +...++.++|++.+++..+.. |.
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~  207 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD  207 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence              11 1233433333333  345677888888877766322 34444444333   334566677777777766653 33


Q ss_pred             cHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHH
Q 008022          304 NVTTYSALIDGFAK----AGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFN  379 (581)
Q Consensus       304 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  379 (581)
                      +...+..+...+..    .+++++|...+++.....+ .+...+..+...+...|++++|...+++..... |.+..++.
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  285 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC  285 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence            55555555544443    3456677777777666532 245566677777777777777777777776653 44555565


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC
Q 008022          380 TFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG  459 (581)
Q Consensus       380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  459 (581)
                      .+..+|...+..         ..... ..      .........+..++|...++...+.. +.+...+..+...+...|
T Consensus       286 ~lg~~y~~~~~~---------~~~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~  348 (472)
T 4g1t_A          286 QIGCCYRAKVFQ---------VMNLR-EN------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD  348 (472)
T ss_dssp             HHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH---------hhhHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence            555544321110         00000 00      00001112234678888888888764 455667888899999999


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHH
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAI--TFNIIIY-AYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAF  536 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  536 (581)
                      ++++|.+.|++++.....+...  .+..++. .+...|++++|+..++++.+   +.|+......         ..+.+.
T Consensus       349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~---------~~~~l~  416 (472)
T 4g1t_A          349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEK---------MKDKLQ  416 (472)
T ss_dssp             CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHH---------HHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHH---------HHHHHH
Confidence            9999999999999875433221  2333433 34578999999999999998   5675433222         234455


Q ss_pred             HHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          537 IYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      +++++.++. .+.+..++..++.++...|++++|++.+++.++
T Consensus       417 ~~~~~~l~~-~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe  458 (472)
T 4g1t_A          417 KIAKMRLSK-NGADSEALHVLAFLQELNEKMQQADEDSERGLE  458 (472)
T ss_dssp             HHHHHHHHH-CC-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            667777664 244677899999999999999999999999886

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.77  E-value=1.7e-16  Score=151.35  Aligned_cols=346  Identities=10%  Similarity=-0.017  Sum_probs=175.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCCh---hHHHHHHHHHHHcCCCCCcccHHHHHHHHHc
Q 008022          171 LINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNV---ETSLGILGQMFVRGCNPNIHSFTSLLKGYLL  247 (581)
Q Consensus       171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  247 (581)
                      +...+.+.|++++|+++|++..+.|   +...+..+...|...|+.   ++|..+|++..+.    ++..+..+...+..
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~   81 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA   81 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence            3444555666666666666665543   333444444555555555   6666666666533    34445555553333


Q ss_pred             cC-----CHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChh---hHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC
Q 008022          248 GG-----RTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMD---EAVSVSYQMEENSCPPNVTTYSALIDGFAKAG  319 (581)
Q Consensus       248 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  319 (581)
                      .+     +.++|...|++..+.|..   ..+..|...|...+..+   ++.+.+......+   ++.....+...|...+
T Consensus        82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~  155 (452)
T 3e4b_A           82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG  155 (452)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred             CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence            33     556666666666665422   24445555555544322   3333444433333   2344455555555555


Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcC----CChH
Q 008022          320 NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNN---MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGC----GRVD  392 (581)
Q Consensus       320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~  392 (581)
                      .++.+......+...-...++..+..+...|...|   ++++|+..|++....+ +++...+..+...|...    ++++
T Consensus       156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~  234 (452)
T 3e4b_A          156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK  234 (452)
T ss_dssp             CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred             CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence            44333333222211111123335566666666666   6677777777776665 44444445555555443    5677


Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC-----CHHHH
Q 008022          393 WAMKLLDQMKQYECLPNITTYNELLDG-L--LRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG-----MVVEA  464 (581)
Q Consensus       393 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a  464 (581)
                      +|...|++.. .   .+...+..+... +  ...+++++|++.|++..+.|   +...+..+...|. .|     ++++|
T Consensus       235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A  306 (452)
T 3e4b_A          235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA  306 (452)
T ss_dssp             HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred             HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence            7777777665 2   344455555554 3  34667777777777776654   4455555555555 44     77777


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc----cCCHHHHH
Q 008022          465 FQLLGKMLIEGTKLDAITFNIIIYAYCK----QGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN----SGGMQEAF  536 (581)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~  536 (581)
                      .+.|++.. .   .++.....++..|..    ..++++|..+|++..+.+    ++.....|+..|..    ..+.++|.
T Consensus       307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~  378 (452)
T 3e4b_A          307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG----QNSADFAIAQLFSQGKGTKPDPLNAY  378 (452)
T ss_dssp             HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT----CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred             HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC----hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence            77777666 2   255566666666655    236777777777776621    33445556655553    34677777


Q ss_pred             HHHHHHHHcC
Q 008022          537 IYLQKMLNEG  546 (581)
Q Consensus       537 ~~~~~~~~~~  546 (581)
                      .+|+++.+.|
T Consensus       379 ~~~~~A~~~g  388 (452)
T 3e4b_A          379 VFSQLAKAQD  388 (452)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHCC
Confidence            7777776655

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.74  E-value=2.5e-16  Score=134.23  Aligned_cols=194  Identities=14%  Similarity=0.008  Sum_probs=79.6

Q ss_pred             hhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q 008022          376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGV  455 (581)
Q Consensus       376 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  455 (581)
                      ..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+..+++..+.. |.+...+..+...+
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~   83 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY   83 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            333334444444444444444444443332 2233333344444444444444444444444332 22333344444444


Q ss_pred             Hhc-----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHH
Q 008022          456 CRA-----------GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLW  524 (581)
Q Consensus       456 ~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~  524 (581)
                      ...           |++++|+..+++.++.. +.+...+..++.+|...|++++|+..++++.+..   .++..+..++.
T Consensus        84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~  159 (217)
T 2pl2_A           84 VALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSALAE  159 (217)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred             HHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHH
Confidence            444           55555555555555432 2234444455555555555555555555554411   34444445555


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHH
Q 008022          525 GICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDD  576 (581)
Q Consensus       525 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  576 (581)
                      +|...|++++|+..|+++++.. +.+...+..+..++...|++++|++.+++
T Consensus       160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            5555555555555555554421 12233444444455555555555544443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.74  E-value=9.3e-16  Score=146.30  Aligned_cols=381  Identities=14%  Similarity=0.059  Sum_probs=212.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHH
Q 008022          106 LLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAF  185 (581)
Q Consensus       106 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  185 (581)
                      +...+.+.|++++|.++|++..+.|   ++..+..+...|...|+.                           .++++|.
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~---------------------------~d~~~A~   58 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDP---------------------------AQIKQAE   58 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------------
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCC---------------------------CCHHHHH
Confidence            4455556677777777776665543   233333344444444444                           0014455


Q ss_pred             HHHHHHHHCCCCCCcccHHHHHHHHHccC-----ChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHH---HHHHH
Q 008022          186 WLLCEMVDRGIDPNVITYSTIISSLCDVG-----NVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTH---EASDL  257 (581)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~  257 (581)
                      .+|++..+.    ++..+..+...+...|     ++++|..+|++..+.|   +...+..+...|...+...   .+.+.
T Consensus        59 ~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~  131 (452)
T 3e4b_A           59 ATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQ  131 (452)
T ss_dssp             ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred             HHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence            555444432    3334444444333333     4555666666655544   2224455555554443322   23444


Q ss_pred             HHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 008022          258 WNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAG---NLLGASQIWNRMISN  334 (581)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~  334 (581)
                      +......|   ++.....+...|...+.++++......+.+.-...++..+..+...|...|   +.++|...|++..+.
T Consensus       132 ~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~  208 (452)
T 3e4b_A          132 ISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR  208 (452)
T ss_dssp             HHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC
Confidence            44444333   334455566666666655544444333222111223336677777777777   777888888887777


Q ss_pred             CCCCChhhHHHHHHHHHcc----CChhHHHHHHHHHhhCCCCCChhhHHHHHHH-h--hcCCChHHHHHHHHHHhhCCCC
Q 008022          335 GCSPNVVAYTCMVKVLCQN----NMFHQAHSLIEKMAFENCPPNTVTFNTFIKG-L--CGCGRVDWAMKLLDQMKQYECL  407 (581)
Q Consensus       335 ~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~  407 (581)
                      |.. +...+..+...|...    +++++|..+|++..    +.++..+..+... +  ...+++++|...|++..+.|  
T Consensus       209 g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--  281 (452)
T 3e4b_A          209 GTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--  281 (452)
T ss_dssp             TCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--
T ss_pred             CCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--
Confidence            633 444445566666544    68888888888877    3355566666655 3  45788888888888888765  


Q ss_pred             CChhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCc
Q 008022          408 PNITTYNELLDGLLRVN-----RVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR----AGMVVEAFQLLGKMLIEGTKL  478 (581)
Q Consensus       408 ~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~  478 (581)
                       +...+..+...|. .|     ++++|.+.|+... .|   +......+...|..    ..++++|...|++..+.|   
T Consensus       282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---  352 (452)
T 3e4b_A          282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---  352 (452)
T ss_dssp             -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---
T ss_pred             -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---
Confidence             5566666776666 45     8889998888877 43   55666666666665    348899999999988765   


Q ss_pred             CHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          479 DAITFNIIIYAYCK----QGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       479 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      +......++.+|..    ..++++|..+++++.+.+  .++.......+......++.++|..+.++..+
T Consensus       353 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g--~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~  420 (452)
T 3e4b_A          353 QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD--TPEANDLATQLEAPLTPAQRAEGQRLVQQELA  420 (452)
T ss_dssp             CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            34456677777764    458899999999988732  13333222223333344566777777776644

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.74  E-value=3.9e-16  Score=133.06  Aligned_cols=200  Identities=13%  Similarity=0.034  Sum_probs=165.5

Q ss_pred             CCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 008022          337 SPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNEL  416 (581)
Q Consensus       337 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  416 (581)
                      +++...+..+...+.+.|++++|...+++..... |.+...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            4577788889999999999999999999999875 7788999999999999999999999999998876 4466788899


Q ss_pred             HHHHHhc-----------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 008022          417 LDGLLRV-----------NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNI  485 (581)
Q Consensus       417 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  485 (581)
                      ...+...           |++++|+..+++..+.. |.+...+..+...+...|++++|+..++++++..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            9999999           99999999999999874 5567888999999999999999999999999987  78899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       486 l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      ++.+|...|++++|+..++++.+   ..| +...+..++..+...|++++|+..+++...
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            99999999999999999999998   456 677889999999999999999999988754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=1e-15  Score=135.20  Aligned_cols=225  Identities=11%  Similarity=0.017  Sum_probs=171.2

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCC--CCC----hhhH
Q 008022          305 VTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENC--PPN----TVTF  378 (581)
Q Consensus       305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~  378 (581)
                      ...+..+...+...|++++|...++++.+..  .+...+..+..++...|++++|...+++......  .++    ...+
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            3455666666677777777777777766655  4566666777777777777777777776655321  111    4667


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Q 008022          379 NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA  458 (581)
Q Consensus       379 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  458 (581)
                      ..+...+...|++++|...|++..+..  |+.       ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence            777788888888888888888887643  442       34566788899999999888763 44667788888889999


Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHH
Q 008022          459 GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFI  537 (581)
Q Consensus       459 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~  537 (581)
                      |++++|...++++.... +.+..++..++.+|...|++++|++.++++.+   ..| +..++..++.++...|++++|..
T Consensus       153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~g~~~~A~~  228 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE---KDPNFVRAYIRKATAQIAVKEYASALE  228 (258)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999998875 45778889999999999999999999999987   345 57788899999999999999999


Q ss_pred             HHHHHHHc
Q 008022          538 YLQKMLNE  545 (581)
Q Consensus       538 ~~~~~~~~  545 (581)
                      .++++.+.
T Consensus       229 ~~~~a~~~  236 (258)
T 3uq3_A          229 TLDAARTK  236 (258)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.71  E-value=3.3e-15  Score=133.10  Aligned_cols=245  Identities=12%  Similarity=0.012  Sum_probs=163.6

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChh----hHHHH
Q 008022          306 TTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTV----TFNTF  381 (581)
Q Consensus       306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l  381 (581)
                      ..+......+...|++++|...++++.+..+. +...+..+..++...|++++|...+++....  +++..    .+..+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSK--VNATKAKSADFEYY   80 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--cCchhHHHHHHHHH
Confidence            34445556666777777777777777665322 3446666667777777777777777777663  22222    36677


Q ss_pred             HHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCH
Q 008022          382 IKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV  461 (581)
Q Consensus       382 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  461 (581)
                      ...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~  158 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY  158 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence            777777777777777777776654 3355677777777888888888888888777652 44566666666344445588


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCC------HHhHHHHHHHHHccCCH
Q 008022          462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK---VNNAIQLLDRIRGGGEWNPD------IISYTSLLWGICNSGGM  532 (581)
Q Consensus       462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~  532 (581)
                      ++|.+.++++++.. +.+...+..++.++...|+   +++|...++++.+.....|+      ..+|..++..|...|++
T Consensus       159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  237 (272)
T 3u4t_A          159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK  237 (272)
T ss_dssp             HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence            88888888888764 3456677777777777777   77788888777663222243      24677788888888888


Q ss_pred             HHHHHHHHHHHHcCCCCC-HHhHHHHH
Q 008022          533 QEAFIYLQKMLNEGICPN-FATWNVLV  558 (581)
Q Consensus       533 ~~A~~~~~~~~~~~~~~~-~~~~~~l~  558 (581)
                      ++|...++++++.  .|+ ......+.
T Consensus       238 ~~A~~~~~~al~~--~p~~~~a~~~l~  262 (272)
T 3u4t_A          238 VKADAAWKNILAL--DPTNKKAIDGLK  262 (272)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHC
T ss_pred             HHHHHHHHHHHhc--CccHHHHHHHhh
Confidence            8888888888774  454 34444333

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.5e-15  Score=132.73  Aligned_cols=223  Identities=12%  Similarity=0.014  Sum_probs=155.3

Q ss_pred             hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC----hhhHHH
Q 008022          272 AYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCS--PN----VVAYTC  345 (581)
Q Consensus       272 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~  345 (581)
                      .+..+...+...|++++|...+.++.+..  .+...+..+..++...|++++|...++++.+..+.  ++    ...+..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            44555555666666666666666655544  45555666666666666666666666665543211  11    345666


Q ss_pred             HHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 008022          346 MVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNR  425 (581)
Q Consensus       346 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  425 (581)
                      +...+...|++++|...+++.....  |+.       ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence            6666777777777777777766542  332       33455577788888888877654 3345567778888888888


Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008022          426 VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDR  505 (581)
Q Consensus       426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  505 (581)
                      +++|...++++.+.. +.+...+..+...+...|++++|...+++++... +.+..++..++.++...|++++|.+.+++
T Consensus       155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            888888888888764 5567788888888888999999999998888864 45677888888999999999999999988


Q ss_pred             Hhc
Q 008022          506 IRG  508 (581)
Q Consensus       506 ~~~  508 (581)
                      +.+
T Consensus       233 a~~  235 (258)
T 3uq3_A          233 ART  235 (258)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            876

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.69  E-value=9.1e-15  Score=130.21  Aligned_cols=245  Identities=11%  Similarity=0.002  Sum_probs=147.8

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHH
Q 008022          273 YSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPN--VVAYTCMVKVL  350 (581)
Q Consensus       273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~  350 (581)
                      +......+...|++++|+..++++.+.. |.+...+..+..++...|++++|...++++...+..|+  ...+..+...+
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            3344455555666666666666655542 23344555555566666666666666666655321111  12255566666


Q ss_pred             HccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 008022          351 CQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAF  430 (581)
Q Consensus       351 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  430 (581)
                      ...|++++|...+++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|.
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666553 4455667777777777777777777777776553 334455555552333345777777


Q ss_pred             HHHHHHHHcCCcccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCcC------HHHHHHHHHHHHhcCCHHHHH
Q 008022          431 ELVTEIEKCGIQLNIVTYNTILHGVCRAGM---VVEAFQLLGKMLIEG-TKLD------AITFNIIIYAYCKQGKVNNAI  500 (581)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A~  500 (581)
                      +.++.+.+.. +.+...+..+...+...|+   +++|...++++.+.. ..|+      ..++..++..|...|++++|.
T Consensus       163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            7777777653 3445666666777777776   667777777776541 1122      246677778888888888888


Q ss_pred             HHHHHHhcCCCCCC-CHHhHHHHHH
Q 008022          501 QLLDRIRGGGEWNP-DIISYTSLLW  524 (581)
Q Consensus       501 ~~~~~~~~~~~~~p-~~~~~~~l~~  524 (581)
                      +.++++.+   +.| +...+..+..
T Consensus       242 ~~~~~al~---~~p~~~~a~~~l~~  263 (272)
T 3u4t_A          242 AAWKNILA---LDPTNKKAIDGLKM  263 (272)
T ss_dssp             HHHHHHHH---HCTTCHHHHHHHC-
T ss_pred             HHHHHHHh---cCccHHHHHHHhhh
Confidence            88888877   456 4444444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.69  E-value=1.4e-13  Score=122.38  Aligned_cols=225  Identities=11%  Similarity=-0.055  Sum_probs=181.0

Q ss_pred             CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCChhhH
Q 008022          303 PNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ----NNMFHQAHSLIEKMAFENCPPNTVTF  378 (581)
Q Consensus       303 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  378 (581)
                      .++..+..+...+...|++++|...|++..+.   .+...+..+...+..    .+++++|...+++....+   ++..+
T Consensus         4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~   77 (273)
T 1ouv_A            4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   77 (273)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            36677788888888889999999999888873   355677778888888    889999999998888764   67777


Q ss_pred             HHHHHHhhc----CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcccHHHHHH
Q 008022          379 NTFIKGLCG----CGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLR----VNRVKEAFELVTEIEKCGIQLNIVTYNT  450 (581)
Q Consensus       379 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  450 (581)
                      ..+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|+..++...+.+   +...+..
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~  151 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence            888888888    889999999998888764   66777788888888    888999999998888765   5566777


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHhHHHH
Q 008022          451 ILHGVCR----AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK----QGKVNNAIQLLDRIRGGGEWNPDIISYTSL  522 (581)
Q Consensus       451 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l  522 (581)
                      +...|..    .+++++|...+++..+.+   +...+..++.+|..    .+++++|++.++++.+.   .| ...+..+
T Consensus       152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~~-~~a~~~l  224 (273)
T 1ouv_A          152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL---EN-GGGCFNL  224 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT---TC-HHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC---CC-HHHHHHH
Confidence            7777777    888899999988888764   56777888888888    88899999999888872   23 6677788


Q ss_pred             HHHHHc----cCCHHHHHHHHHHHHHcC
Q 008022          523 LWGICN----SGGMQEAFIYLQKMLNEG  546 (581)
Q Consensus       523 ~~~~~~----~g~~~~A~~~~~~~~~~~  546 (581)
                      ...|..    .+++++|...|+++.+.|
T Consensus       225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          225 GAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            888888    888888999998888754

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.68  E-value=1.5e-13  Score=122.29  Aligned_cols=222  Identities=8%  Similarity=-0.110  Sum_probs=140.1

Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 008022          269 NVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK----AGNLLGASQIWNRMISNGCSPNVVAYT  344 (581)
Q Consensus       269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  344 (581)
                      ++.++..+...+...|++++|...|++..+.   .++..+..+...+..    .+++++|...|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4455556666666666777777766666662   244556666666666    666777777776666653   555666


Q ss_pred             HHHHHHHc----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhc----CCChHHHHHHHHHHhhCCCCCChhhHHHH
Q 008022          345 CMVKVLCQ----NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCG----CGRVDWAMKLLDQMKQYECLPNITTYNEL  416 (581)
Q Consensus       345 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  416 (581)
                      .+...+..    .+++++|...+++....+   +...+..+...|..    .+++++|...|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            66666666    666777777776666543   45566666666666    667777777776666643   34455555


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022          417 LDGLLR----VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR----AGMVVEAFQLLGKMLIEGTKLDAITFNIIIY  488 (581)
Q Consensus       417 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  488 (581)
                      ...|..    .+++++|...++...+.+   +...+..+...|..    .+++++|.+.+++..+.+   +...+..+..
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~  226 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  226 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            666665    666777777776666543   34555556666666    667777777776666643   2455666666


Q ss_pred             HHHh----cCCHHHHHHHHHHHhc
Q 008022          489 AYCK----QGKVNNAIQLLDRIRG  508 (581)
Q Consensus       489 ~~~~----~g~~~~A~~~~~~~~~  508 (581)
                      +|..    .+++++|++.++++.+
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~  250 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCK  250 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHH
Confidence            6666    6667777777766666

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.68  E-value=3.1e-14  Score=125.14  Aligned_cols=206  Identities=13%  Similarity=-0.038  Sum_probs=149.9

Q ss_pred             hhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 008022          341 VAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGL  420 (581)
Q Consensus       341 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  420 (581)
                      ..+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            445556666667777777777777766553 4556667777777777777777777777776654 33556677777778


Q ss_pred             HhcCCHHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 008022          421 LRVNRVKEAFELVTEIEKCGI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNA  499 (581)
Q Consensus       421 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  499 (581)
                      ...|++++|.+.++++.+.+. +.+...+..+...+...|++++|.+.++++.... +.+...+..++.+|...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence            888888888888888776222 3345667777788888888888888888888764 44677788888888888888888


Q ss_pred             HHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH
Q 008022          500 IQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATW  554 (581)
Q Consensus       500 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  554 (581)
                      ...++++.+   ..| +...+..++..+...|++++|.++++++.+.  .|+....
T Consensus       195 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~  245 (252)
T 2ho1_A          195 RQYYDLFAQ---GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY  245 (252)
T ss_dssp             HHHHHHHHT---TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred             HHHHHHHHH---hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence            888888877   234 5667778888888888888888888888774  4554443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.67  E-value=2e-14  Score=132.49  Aligned_cols=248  Identities=13%  Similarity=0.035  Sum_probs=182.7

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC-hhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022          305 VTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM-FHQAHSLIEKMAFENCPPNTVTFNTFIK  383 (581)
Q Consensus       305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~  383 (581)
                      ...|..+...+...|++++|+..+++++...+. +...|..+..++...|+ +++|+..+++..... |.+...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            445666667777778888888888877776432 56677777777777785 888888888887765 567777888888


Q ss_pred             HhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh-cCCHH
Q 008022          384 GLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR-AGMVV  462 (581)
Q Consensus       384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  462 (581)
                      ++...|++++|+..|+++.+.. +.+...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence            8888888888888888887765 3466778888888888888888888888888764 4567788888888887 55546


Q ss_pred             HH-----HHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccC----
Q 008022          463 EA-----FQLLGKMLIEGTKLDAITFNIIIYAYCKQG--KVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSG----  530 (581)
Q Consensus       463 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g----  530 (581)
                      +|     ++.+++++... +.+...|..+..++...|  ++++|++.+.++ +   ..| +...+..++.+|.+.|    
T Consensus       253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~---~~p~~~~al~~La~~~~~~~~~~~  327 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q---PSHSSPYLIAFLVDIYEDMLENQC  327 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T---TTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c---cCCCCHHHHHHHHHHHHHHhcccc
Confidence            66     57888888764 446778888888888877  688888888887 4   345 5677888888888764    


Q ss_pred             -----CHHHHHHHHHHH-HHcCCCCCH-HhHHHHHHHHHh
Q 008022          531 -----GMQEAFIYLQKM-LNEGICPNF-ATWNVLVRSLFS  563 (581)
Q Consensus       531 -----~~~~A~~~~~~~-~~~~~~~~~-~~~~~l~~~~~~  563 (581)
                           ..++|+++++++ .+  +.|.. ..|..+...+..
T Consensus       328 ~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          328 DNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             SSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence                 258899999988 65  45654 445555555543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.66  E-value=3.2e-14  Score=131.13  Aligned_cols=247  Identities=11%  Similarity=0.033  Sum_probs=193.2

Q ss_pred             HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 008022          271 VAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGN-LLGASQIWNRMISNGCSPNVVAYTCMVKV  349 (581)
Q Consensus       271 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  349 (581)
                      ..|..+...+...|++++|+..+.++.... |.+...|..+..++...|+ +++|+..|++++...+. +...|..+..+
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~  175 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence            456677777888888888888888888764 5567788888888888886 88888888888886543 66788888888


Q ss_pred             HHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh-cCCHHH
Q 008022          350 LCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLR-VNRVKE  428 (581)
Q Consensus       350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~  428 (581)
                      +...|++++|+..++++.... +.+...|..+..++...|++++|+..++++.+.+ +.+...|+.+..++.. .|..++
T Consensus       176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence            888899999999998888775 6778888888888888899999999999988766 3466788888888888 555577


Q ss_pred             H-----HHHHHHHHHcCCcccHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-------
Q 008022          429 A-----FELVTEIEKCGIQLNIVTYNTILHGVCRAG--MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG-------  494 (581)
Q Consensus       429 a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------  494 (581)
                      |     ++.+++.++.. +.+...|..+...+...|  ++++|.+.+.++ +. .+.+...+..++.+|.+.|       
T Consensus       254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence            7     57888888764 556778888888888877  689999999887 33 2556778888999998874       


Q ss_pred             --CHHHHHHHHHHH-hcCCCCCC-CHHhHHHHHHHHH
Q 008022          495 --KVNNAIQLLDRI-RGGGEWNP-DIISYTSLLWGIC  527 (581)
Q Consensus       495 --~~~~A~~~~~~~-~~~~~~~p-~~~~~~~l~~~~~  527 (581)
                        .+++|+++++++ .+   +.| ....|..++..+.
T Consensus       331 ~~~~~~A~~~~~~l~~~---~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          331 EDILNKALELCEILAKE---KDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHHHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---hCchhHHHHHHHHHHHH
Confidence              258999999999 67   567 4456666665544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.66  E-value=8.3e-12  Score=122.88  Aligned_cols=458  Identities=11%  Similarity=0.033  Sum_probs=222.9

Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---cchHHHH
Q 008022           11 IDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR---FSMINPI   87 (581)
Q Consensus        11 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~   87 (581)
                      ..+....|++.+..++ .+...|..++..+.+.+.++.+..+|+++...- +.+...|...+..-.+.++   ++.+..+
T Consensus        48 ~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l  125 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPV  125 (679)
T ss_dssp             CSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence            4455556677777665 499999999999988999999999999998754 3778889888888888888   8999999


Q ss_pred             HHHHHhCC-CCCChhhHHHHHHHHHhcCCh--------hHHHHHHHHHhh-CCC-CCCc-chHHHHHHHHHc--------
Q 008022           88 YSNMKRDG-MEPNVFTYNILLKALCKNNRV--------DGAYKLLVEMGN-KGC-APDA-VSYTTIVSSICK--------  147 (581)
Q Consensus        88 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~~-~~~~~l~~~~~~--------  147 (581)
                      |++..... .+|++..|...+....+.++.        +...++|+.... .|. .++. ..|...+.....        
T Consensus       126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e  205 (679)
T 4e6h_A          126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE  205 (679)
T ss_dssp             HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence            99988763 137888888877766555543        334467776544 355 4433 455555544332        


Q ss_pred             -cCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHH
Q 008022          148 -LGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQM  226 (581)
Q Consensus       148 -~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  226 (581)
                       .++.+.+..++++.-..+.            .+.++....|....+. +  +..+...++.-  ...+++.|...+.++
T Consensus       206 eq~~~~~~R~iy~raL~iP~------------~~~~~~w~~Y~~fe~~-~--~~~~a~~~~~e--~~~~y~~Ar~~~~e~  268 (679)
T 4e6h_A          206 EQQRVQYIRKLYKTLLCQPM------------DCLESMWQRYTQWEQD-V--NQLTARRHIGE--LSAQYMNARSLYQDW  268 (679)
T ss_dssp             HHHHHHHHHHHHHHHTTSCC------------SSHHHHHHHHHHHHHH-H--CTTTHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCcc------------HHHHHHHHHHHHHHHh-c--CcchHHHHHHH--hhHHHHHHHHHHHHH
Confidence             2234445555554410000            0001111111111000 0  00011111110  011233333333332


Q ss_pred             HHc--CCC---CCc-cc--HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-------ChhhHHH
Q 008022          227 FVR--GCN---PNI-HS--FTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNG-------SMDEAVS  291 (581)
Q Consensus       227 ~~~--~~~---~~~-~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~  291 (581)
                      ...  ++.   |.. ..  ...+ -..  .........+               |...+..--..+       ..+.+..
T Consensus       269 ~~~~~~l~r~~p~~~~~~~~~~~-p~~--~~~~~~ql~l---------------W~~yi~fEk~~~~~l~~~~~~~Rv~~  330 (679)
T 4e6h_A          269 LNITKGLKRNLPITLNQATESNL-PKP--NEYDVQQLLI---------------WLEWIRWESDNKLELSDDLHKARMTY  330 (679)
T ss_dssp             HHHTTTCCCCCCSSSTTCCTTTS-CCT--TCCCHHHHHH---------------HHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred             HHHHHhHhhccccccccchhccC-CCC--chhHHHHHHH---------------HHHHHHHHHhCCccccchhhHHHHHH
Confidence            211  110   000 00  0000 000  0000000111               111111111100       0112333


Q ss_pred             HHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCC
Q 008022          292 VSYQMEENSCPPNVTTYSALIDGFAKAGNLLGAS-QIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFEN  370 (581)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  370 (581)
                      +|++.... ++..+..|...+..+...|+.++|. .+|++..... +.+...+..++....+.|+++.|..+|+++....
T Consensus       331 ~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l  408 (679)
T 4e6h_A          331 VYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRI  408 (679)
T ss_dssp             HHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            44444443 2335555555555555556655564 6666655431 2233344445555555666666666666554321


Q ss_pred             ----------CCC-----------ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc-CCHHH
Q 008022          371 ----------CPP-----------NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRV-NRVKE  428 (581)
Q Consensus       371 ----------~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~  428 (581)
                                .|.           ...+|...+....+.|+.+.|..+|....+.........|...+..-.+. ++.+.
T Consensus       409 ~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~  488 (679)
T 4e6h_A          409 HLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT  488 (679)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH
T ss_pred             HHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH
Confidence                      011           12244555555555566666666666665531111222332222222222 33666


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022          429 AFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK--LDAITFNIIIYAYCKQGKVNNAIQLLDRI  506 (581)
Q Consensus       429 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  506 (581)
                      |.++|+...+. .+.+...+...+......|+.+.|..+|++.+....+  .....|...+..-.+.|+.+.+.++.+++
T Consensus       489 Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~  567 (679)
T 4e6h_A          489 ACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF  567 (679)
T ss_dssp             HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666666554 2334444555555555566666666666666654321  12345555555555666666666666666


Q ss_pred             hc
Q 008022          507 RG  508 (581)
Q Consensus       507 ~~  508 (581)
                      .+
T Consensus       568 ~~  569 (679)
T 4e6h_A          568 FE  569 (679)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.66  E-value=7.6e-15  Score=131.00  Aligned_cols=217  Identities=11%  Similarity=-0.086  Sum_probs=105.0

Q ss_pred             CCHHHHHHHHHHHHhCCCC---CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHH
Q 008022          319 GNLLGASQIWNRMISNGCS---PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAM  395 (581)
Q Consensus       319 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  395 (581)
                      |++++|...++++.+....   .+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~   97 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY   97 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence            3444455555444443211   122334444444555555555555555554442 334445555555555555555555


Q ss_pred             HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008022          396 KLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG  475 (581)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  475 (581)
                      ..|+++.+.. +.+...+..+...+...|++++|...++.+.+..  |+..........+...|++++|...+++.....
T Consensus        98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A           98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            5555554432 2234455555555555555555555555555432  222222222333344455666666665555442


Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-----HHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-----IISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       476 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                       +++...+ .++..+...++.++|.+.++++..   ..|+     ..++..++..|...|++++|...|+++++
T Consensus       175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  243 (275)
T 1xnf_A          175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA  243 (275)
T ss_dssp             -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             2222222 244445555555556666555554   1221     34555556666666666666666666654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.66  E-value=7.6e-15  Score=128.28  Aligned_cols=200  Identities=12%  Similarity=0.091  Sum_probs=137.6

Q ss_pred             ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022          339 NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLD  418 (581)
Q Consensus       339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  418 (581)
                      ....+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            33455556666777777777777777776653 5566777777777778888888888887776654 335667777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022          419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN  498 (581)
Q Consensus       419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  498 (581)
                      .+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+...+..++.++...|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence            8888888888888888887764 4566777778888888888888888888887764 4467778888888888888888


Q ss_pred             HHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          499 AIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       499 A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      |++.++++.+   ..| +..++..++.+|...|++++|...++++.+.
T Consensus       178 A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          178 ALSQFAAVTE---QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH---hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            8888888877   234 5667888888888888888888888888774

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.65  E-value=3.9e-15  Score=132.92  Aligned_cols=152  Identities=12%  Similarity=0.025  Sum_probs=113.0

Q ss_pred             hhhcCChhHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 008022            5 LGEKCEIDGVQYLLQQMKVEGV---SCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRF   81 (581)
Q Consensus         5 ~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   81 (581)
                      +..+|++++|...|+.+.+...   +.+..++..++..+...|++++|...|+++....+ .+...+..+...+...|++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCH
Confidence            4567888999999998887632   23567888888899999999999999998887654 5678888888888889999


Q ss_pred             chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHH
Q 008022           82 SMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMR  160 (581)
Q Consensus        82 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  160 (581)
                      ++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.  .|+..........+...|++++|...+.+
T Consensus        94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  169 (275)
T 1xnf_A           94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ  169 (275)
T ss_dssp             HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99999998888765 456778888888888888888888888888775  34443333333334444555555555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.64  E-value=1.3e-13  Score=121.03  Aligned_cols=200  Identities=15%  Similarity=0.026  Sum_probs=143.9

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 008022          305 VTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKG  384 (581)
Q Consensus       305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  384 (581)
                      ...+..+...+...|++++|...++++..... .+...+..+...+...|++++|...++++.... +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            34555666666666777777777766665432 245566666677777777777777777766653 4456667777777


Q ss_pred             hhcCCChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHH
Q 008022          385 LCGCGRVDWAMKLLDQMKQYECLP-NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE  463 (581)
Q Consensus       385 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  463 (581)
                      +...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            777888888888887776622223 44566777778888888888888888887764 4457777888888888888888


Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          464 AFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       464 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      |...++++.... +.+...+..++..+...|++++|.+.++++.+
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            888888887754 45677778888888888888888888888877

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.64  E-value=1e-13  Score=119.48  Aligned_cols=199  Identities=14%  Similarity=-0.019  Sum_probs=114.7

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 008022          342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLL  421 (581)
Q Consensus       342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  421 (581)
                      .+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A           10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence            44444555555555555555555554442 3344555555555556666666666666555433 224445555666666


Q ss_pred             hc-CCHHHHHHHHHHHHHcCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 008022          422 RV-NRVKEAFELVTEIEKCGI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNA  499 (581)
Q Consensus       422 ~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  499 (581)
                      .. |++++|...++.+.+.+. +.+...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence            66 666666666666655211 2224555666666666677777777776666653 33456666666777777777777


Q ss_pred             HHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          500 IQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       500 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      .+.++++.+..+ ..+...+..+...+...|+.++|..+++.+.+
T Consensus       167 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          167 DYYFKKYQSRVE-VLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            777776665211 02344555555666667777777777776654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.64  E-value=8.9e-12  Score=122.66  Aligned_cols=448  Identities=10%  Similarity=0.045  Sum_probs=289.5

Q ss_pred             cchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCC---HHHHHHH
Q 008022           81 FSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQ---VEEAREL  157 (581)
Q Consensus        81 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~  157 (581)
                      ..+.+..|++.+..+ +.|...|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|.   ++.+.++
T Consensus        48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l  125 (679)
T 4e6h_A           48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV  125 (679)
T ss_dssp             CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence            445555666666655 678999999999999999999999999999887 45566778888888888888   9999999


Q ss_pred             HHHh---C---CCcchHHHHHHHHHhcCCh--------hHHHHHHHHHHHC-CC-CCC-cccHHHHHHHHHc--------
Q 008022          158 AMRF---G---SGVSVYNALINGLCKEHKI--------EEAFWLLCEMVDR-GI-DPN-VITYSTIISSLCD--------  212 (581)
Q Consensus       158 ~~~~---~---~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~--------  212 (581)
                      |++.   .   +++..|...+....+.++.        +.+.++|+..... |. .++ ...|...+.....        
T Consensus       126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e  205 (679)
T 4e6h_A          126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE  205 (679)
T ss_dssp             HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence            9988   2   7777888888776665553        3344677765543 55 443 3566666654432        


Q ss_pred             -cCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhh
Q 008022          213 -VGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLL---GGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDE  288 (581)
Q Consensus       213 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  288 (581)
                       .++.+.+..+|+..+..  +.. . +..+-..|..   .-+...+.+++.+                     ...+++.
T Consensus       206 eq~~~~~~R~iy~raL~i--P~~-~-~~~~w~~Y~~fe~~~~~~~a~~~~~e---------------------~~~~y~~  260 (679)
T 4e6h_A          206 EQQRVQYIRKLYKTLLCQ--PMD-C-LESMWQRYTQWEQDVNQLTARRHIGE---------------------LSAQYMN  260 (679)
T ss_dssp             HHHHHHHHHHHHHHHTTS--CCS-S-HHHHHHHHHHHHHHHCTTTHHHHHHH---------------------HHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhC--ccH-H-HHHHHHHHHHHHHhcCcchHHHHHHH---------------------hhHHHHH
Confidence             23456677777777642  211 1 1111111110   0000001111111                     0112222


Q ss_pred             HHHHHHHHHh------CCC------------CC----c---HHhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCC
Q 008022          289 AVSVSYQMEE------NSC------------PP----N---VTTYSALIDGFAKAG-------NLLGASQIWNRMISNGC  336 (581)
Q Consensus       289 a~~~~~~~~~------~~~------------~~----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~  336 (581)
                      |...+.++..      ...            |+    +   ...|...+..-...+       ....+..+|+++...- 
T Consensus       261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-  339 (679)
T 4e6h_A          261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-  339 (679)
T ss_dssp             HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-
Confidence            3333332211      001            10    0   123444443322222       1234567788887753 


Q ss_pred             CCChhhHHHHHHHHHccCChhHHH-HHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCC---------
Q 008022          337 SPNVVAYTCMVKVLCQNNMFHQAH-SLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC---------  406 (581)
Q Consensus       337 ~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------  406 (581)
                      +-....|...+..+...|+.++|. .++++.... .|.+...+-..+......|+++.|.++|+.+.....         
T Consensus       340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~  418 (679)
T 4e6h_A          340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED  418 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence            336778888888888889999996 999999875 366777778888888899999999999999875310         


Q ss_pred             CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 008022          407 LPN------------ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA-GMVVEAFQLLGKMLI  473 (581)
Q Consensus       407 ~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~  473 (581)
                      .|+            ...|...+....+.|+.+.|..+|..+.+.........|...+..-.+. ++++.|.++|+..++
T Consensus       419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk  498 (679)
T 4e6h_A          419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK  498 (679)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred             cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            132            2357777777778899999999999998751122334444333333343 458999999999998


Q ss_pred             CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 008022          474 EGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF  551 (581)
Q Consensus       474 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  551 (581)
                      . .+.+...+..++......|+.+.|..+|+++..... .+  ....|..++..-...|+.+.+.++.+++.+.  .|+.
T Consensus       499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~-~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~  574 (679)
T 4e6h_A          499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS-DSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEV  574 (679)
T ss_dssp             H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS-STTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTC
T ss_pred             H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence            7 345677777888888889999999999999998331 11  3457788888788899999999999999885  4555


Q ss_pred             HhHHHHHHHH
Q 008022          552 ATWNVLVRSL  561 (581)
Q Consensus       552 ~~~~~l~~~~  561 (581)
                      .....+...|
T Consensus       575 ~~~~~f~~ry  584 (679)
T 4e6h_A          575 NKLEEFTNKY  584 (679)
T ss_dssp             CHHHHHHHHT
T ss_pred             cHHHHHHHHh
Confidence            4444454444

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.64  E-value=1.7e-14  Score=126.05  Aligned_cols=211  Identities=12%  Similarity=0.117  Sum_probs=138.8

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022          304 NVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIK  383 (581)
Q Consensus       304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  383 (581)
                      .+..+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...+++..... +.+...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            344455556666666777777777777666432 245566666677777777777777777766653 456667777777


Q ss_pred             HhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHH
Q 008022          384 GLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE  463 (581)
Q Consensus       384 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  463 (581)
                      .+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence            7777888888888887776654 3456667777788888888888888888887763 4567777788888888888888


Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022          464 AFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSL  522 (581)
Q Consensus       464 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l  522 (581)
                      |...++++.... +.+..++..++.+|...|++++|.+.++++.+   ..| +...+..+
T Consensus       178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~~  233 (243)
T 2q7f_A          178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID---IQPDHMLALHAK  233 (243)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc---cCcchHHHHHHH
Confidence            888888888764 44677888888888888888888888888887   445 34444433

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.64  E-value=2.1e-16  Score=155.35  Aligned_cols=119  Identities=19%  Similarity=0.218  Sum_probs=88.3

Q ss_pred             ChhhHHHHHHHhhcCCChHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHH
Q 008022          374 NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQ---YECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNT  450 (581)
Q Consensus       374 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  450 (581)
                      -..+|+++|++|++.|++++|.++|+.|.+   .|+.||..|||.|+.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            345677777777777777777777766543   35677777787777777777777788888877777777777778877


Q ss_pred             HHHHHHhcCCH-HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008022          451 ILHGVCRAGMV-VEAFQLLGKMLIEGTKLDAITFNIIIYAYCK  492 (581)
Q Consensus       451 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  492 (581)
                      ++.++++.|+. ++|.+++++|...|+.||..+|+.++..+.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence            77777777763 6777777777777777777777776654433

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.63  E-value=2.6e-13  Score=116.87  Aligned_cols=203  Identities=11%  Similarity=0.016  Sum_probs=146.9

Q ss_pred             CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHH
Q 008022          303 PNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFI  382 (581)
Q Consensus       303 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  382 (581)
                      .++..+..+...+...|++++|...++++.+..+ .+...+..+...+...|++++|...+++..... +.+...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~   83 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence            3455566666677777777777777777666532 245566667777777777777777777776653 45666777777


Q ss_pred             HHhhcC-CChHHHHHHHHHHhhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC
Q 008022          383 KGLCGC-GRVDWAMKLLDQMKQYECLP-NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM  460 (581)
Q Consensus       383 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  460 (581)
                      ..+... |++++|...++.+.+....| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence            778888 88888888888777622122 24567777788888888888888888887763 4457777888888888888


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          461 VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       461 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +++|...++++.......+...+..+...+...|+.++|..+++.+.+
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            888888888888764215667777777788888888888888888876

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.62  E-value=4.1e-16  Score=153.31  Aligned_cols=118  Identities=13%  Similarity=0.088  Sum_probs=93.5

Q ss_pred             cchHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHH
Q 008022          165 VSVYNALINGLCKEHKIEEAFWLLCEMVD---RGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSL  241 (581)
Q Consensus       165 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  241 (581)
                      ..+||++|.+|++.|++++|.++|.+|.+   .|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            34688888888888888888888877653   367888888888888888888888888888888888888888888888


Q ss_pred             HHHHHccCC-HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHh
Q 008022          242 LKGYLLGGR-THEASDLWNRMIREGFLPNVVAYSTLIHGLCS  282 (581)
Q Consensus       242 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  282 (581)
                      |.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence            888888776 46778888888888888888888877755443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.61  E-value=2.3e-14  Score=135.97  Aligned_cols=301  Identities=11%  Similarity=-0.001  Sum_probs=171.3

Q ss_pred             cHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CCcHHh
Q 008022          237 SFTSLLKGYLLGGRTHEASDLWNRMIREGFLPN----VVAYSTLIHGLCSNGSMDEAVSVSYQMEEN----SC-PPNVTT  307 (581)
Q Consensus       237 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~  307 (581)
                      .+......+...|++++|...|+++.+.+.. +    ...+..+...+...|++++|...+.+....    +. +.....
T Consensus        11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   89 (406)
T 3sf4_A           11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   89 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            3344455555666666666666665554211 2    133445555555666666666655554321    10 111233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhh
Q 008022          308 YSALIDGFAKAGNLLGASQIWNRMISNGCS-PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLC  386 (581)
Q Consensus       308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  386 (581)
                      +..+...+...|++++|...+++....... ++.                               .....++..+...+.
T Consensus        90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~  138 (406)
T 3sf4_A           90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYH  138 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHHHH
Confidence            444444555555555555555544332100 000                               001224444455555


Q ss_pred             cCCC--------------------hHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 008022          387 GCGR--------------------VDWAMKLLDQMKQY----ECL-PNITTYNELLDGLLRVNRVKEAFELVTEIEKCG-  440 (581)
Q Consensus       387 ~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-  440 (581)
                      ..|+                    +++|...+++....    +.. .....+..+...+...|++++|...+++..+.. 
T Consensus       139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (406)
T 3sf4_A          139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  218 (406)
T ss_dssp             HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred             HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            5555                    66666666554321    111 112356677777888888888888888776431 


Q ss_pred             ---Cc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 008022          441 ---IQ-LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG----TKL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE  511 (581)
Q Consensus       441 ---~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  511 (581)
                         .+ ....++..+...+...|++++|...+++.....    ..+ ...++..++..|...|++++|.+.++++.+...
T Consensus       219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  298 (406)
T 3sf4_A          219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  298 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence               01 112367777788888888888888888877541    111 145677888888888999998888888765211


Q ss_pred             CCCC----HHhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhccCCCC
Q 008022          512 WNPD----IISYTSLLWGICNSGGMQEAFIYLQKMLNE----GICP-NFATWNVLVRSLFSNLGHLG  569 (581)
Q Consensus       512 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~  569 (581)
                      ..++    ..++..++..|...|++++|...++++.+.    +..+ ...++..+...+...|+...
T Consensus       299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            1111    456778888888889999999888887542    1112 13456667777777776643

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.61  E-value=1.3e-13  Score=114.37  Aligned_cols=170  Identities=16%  Similarity=0.136  Sum_probs=126.9

Q ss_pred             ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Q 008022          374 NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILH  453 (581)
Q Consensus       374 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  453 (581)
                      ++.+|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            45667777777777788888888887776655 3356677777777888888888888888777653 445666667777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCH
Q 008022          454 GVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGM  532 (581)
Q Consensus       454 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~  532 (581)
                      .+...++++.|.+.+.+..... +.+...+..++.+|.+.|++++|++.++++.+   +.| +..+|..++.+|...|++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS---IKPGFIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHH---hcchhhhHHHHHHHHHHHCCCH
Confidence            7778888888888888877764 44677777888888888888888888888877   445 566788888888888888


Q ss_pred             HHHHHHHHHHHHcCCCCCH
Q 008022          533 QEAFIYLQKMLNEGICPNF  551 (581)
Q Consensus       533 ~~A~~~~~~~~~~~~~~~~  551 (581)
                      ++|++.|+++++  +.|+.
T Consensus       158 ~~A~~~~~~al~--~~p~~  174 (184)
T 3vtx_A          158 DEAVKYFKKALE--KEEKK  174 (184)
T ss_dssp             HHHHHHHHHHHH--TTHHH
T ss_pred             HHHHHHHHHHHh--CCccC
Confidence            888888888876  34543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.60  E-value=1.2e-14  Score=138.10  Aligned_cols=94  Identities=15%  Similarity=0.109  Sum_probs=48.9

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCChhhH
Q 008022          273 YSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNV----TTYSALIDGFAKAGNLLGASQIWNRMISN----GC-SPNVVAY  343 (581)
Q Consensus       273 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~  343 (581)
                      +..+...+...|++++|...++++.+.. +.+.    ..+..+...+...|++++|...+++....    +. ......+
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  129 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS  129 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence            3344455666666666666666666542 2222    34555556666666666666666655432    00 1112344


Q ss_pred             HHHHHHHHccCChhHHHHHHHHHh
Q 008022          344 TCMVKVLCQNNMFHQAHSLIEKMA  367 (581)
Q Consensus       344 ~~l~~~~~~~~~~~~a~~~~~~~~  367 (581)
                      ..+...+...|++++|...+++..
T Consensus       130 ~~l~~~~~~~g~~~~A~~~~~~al  153 (411)
T 4a1s_A          130 GNLGNTLKVMGRFDEAAICCERHL  153 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH
Confidence            444555555555555555555543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.58  E-value=4.2e-13  Score=125.83  Aligned_cols=230  Identities=10%  Similarity=-0.057  Sum_probs=160.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCChhHHHHHHHHHhhCC--C----CCChhhHH
Q 008022          311 LIDGFAKAGNLLGASQIWNRMISN----GCSP-NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFEN--C----PPNTVTFN  379 (581)
Q Consensus       311 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~  379 (581)
                      ....+...|++++|...+++....    +-.+ ...++..+...+...|++++|...+++.....  .    +....++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            555667788888888888887664    1111 23466777778888888888888887765431  0    11234667


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHhhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-cccHHHHH
Q 008022          380 TFIKGLCGCGRVDWAMKLLDQMKQYECL-PN----ITTYNELLDGLLRVNRVKEAFELVTEIEKC----GI-QLNIVTYN  449 (581)
Q Consensus       380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~  449 (581)
                      .+...|...|++++|...+++..+.... ++    ..++..+...|...|++++|.+.+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            7778888888888888888877542100 11    236777888888889999999888887762    22 34466778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC----CCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCC-CHHhHHH
Q 008022          450 TILHGVCRAGMVVEAFQLLGKMLIE----GTKLDAITFNIIIYAYCKQGK---VNNAIQLLDRIRGGGEWNP-DIISYTS  521 (581)
Q Consensus       450 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p-~~~~~~~  521 (581)
                      .+...+.+.|++++|.+.+++.+..    +.+.....+..+...|...|+   +++|+.++++...    .| ....+..
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~----~~~~~~~~~~  344 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML----YADLEDFAID  344 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC----HHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC----HHHHHHHHHH
Confidence            8888888899999999888888754    111122335667788888888   6777777766532    33 3456778


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHH
Q 008022          522 LLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       522 l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      ++..|...|++++|..+++++.+
T Consensus       345 la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          345 VAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            88888889999999998888864

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.58  E-value=4.6e-14  Score=134.05  Aligned_cols=279  Identities=13%  Similarity=0.056  Sum_probs=175.8

Q ss_pred             cccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCChhhHHHHHHHHHhC----C-CCCcH
Q 008022          235 IHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNV----VAYSTLIHGLCSNGSMDEAVSVSYQMEEN----S-CPPNV  305 (581)
Q Consensus       235 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~  305 (581)
                      ...+..+...+...|++++|+..|+++.+.+.. +.    ..+..+...|...|++++|...+++....    + .+...
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            344455677888999999999999999887432 33    46788888999999999999999987653    1 12345


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCChhhHHHHHHHHHccCC-----------------hhHHHHHH
Q 008022          306 TTYSALIDGFAKAGNLLGASQIWNRMISNG----C-SPNVVAYTCMVKVLCQNNM-----------------FHQAHSLI  363 (581)
Q Consensus       306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~  363 (581)
                      ..+..+...+...|++++|...+++.....    - .....++..+...+...|+                 +++|...+
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~  206 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY  206 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence            678888899999999999999999876531    0 1122345555566666666                 44444444


Q ss_pred             HHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc-
Q 008022          364 EKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQ-  442 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-  442 (581)
                      ++...                            +.....  ........+..+...+...|++++|...+++..+.... 
T Consensus       207 ~~al~----------------------------~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  256 (411)
T 4a1s_A          207 QENLK----------------------------LMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF  256 (411)
T ss_dssp             HHHHH----------------------------HHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH----------------------------HHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence            44322                            111110  00111234555566666666666666666665542100 


Q ss_pred             cc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 008022          443 LN----IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK-----LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWN  513 (581)
Q Consensus       443 ~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  513 (581)
                      ++    ..++..+...+...|++++|...++++......     ....++..++.+|...|++++|.+.++++.....-.
T Consensus       257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence            01    225566666777777777777777776653100     114456677777777777777777777765511100


Q ss_pred             C----CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          514 P----DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       514 p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      +    ...++..++..|...|++++|..+++++.+
T Consensus       337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            1    133666777777778888888888777765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.58  E-value=6.3e-14  Score=132.92  Aligned_cols=274  Identities=11%  Similarity=-0.007  Sum_probs=186.2

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHhhC----CC-CCCh
Q 008022          305 VTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPN----VVAYTCMVKVLCQNNMFHQAHSLIEKMAFE----NC-PPNT  375 (581)
Q Consensus       305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~  375 (581)
                      ...+......+...|++++|...|+++....+. +    ...+..+...+...|++++|...+++....    +. +...
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            334444555555566666666666655554221 2    134455555666666666666666554321    10 1124


Q ss_pred             hhHHHHHHHhhcCCChHHHHHHHHHHhhCCC-----CCChhhHHHHHHHHHhcCC--------------------HHHHH
Q 008022          376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC-----LPNITTYNELLDGLLRVNR--------------------VKEAF  430 (581)
Q Consensus       376 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~a~  430 (581)
                      .++..+...+...|++++|...+++..+...     .....++..+...+...|+                    +++|.
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            4566677777788888888887777644210     0113467788888889999                    99999


Q ss_pred             HHHHHHHHc----CC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcC----HHHHHHHHHHHHhcCCHHHHH
Q 008022          431 ELVTEIEKC----GI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT-KLD----AITFNIIIYAYCKQGKVNNAI  500 (581)
Q Consensus       431 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~  500 (581)
                      +.+++..+.    +. +....++..+...+...|++++|...+++...... .++    ..++..++.+|...|++++|.
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            999876542    11 12245678888899999999999999999886411 111    337888999999999999999


Q ss_pred             HHHHHHhcCCCCCCC----HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhccCCCChH
Q 008022          501 QLLDRIRGGGEWNPD----IISYTSLLWGICNSGGMQEAFIYLQKMLNEGI-CPN----FATWNVLVRSLFSNLGHLGPV  571 (581)
Q Consensus       501 ~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~  571 (581)
                      ..++++.+...-.++    ..++..++..|...|++++|...++++.+..- .++    ...+..+...+...|++++|+
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999998752111111    55788999999999999999999999865311 111    456778888999999999999


Q ss_pred             HHHHHHhh
Q 008022          572 YILDDIMA  579 (581)
Q Consensus       572 ~~~~~~~~  579 (581)
                      +.+++.++
T Consensus       328 ~~~~~al~  335 (406)
T 3sf4_A          328 HFAEKHLE  335 (406)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.58  E-value=3.1e-12  Score=115.68  Aligned_cols=219  Identities=11%  Similarity=0.012  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHH-------ccCCh-------hHHHHHHHHHhhCCCCCChhhHHHHHHHhhc
Q 008022          322 LGASQIWNRMISNGCSPNVVAYTCMVKVLC-------QNNMF-------HQAHSLIEKMAFENCPPNTVTFNTFIKGLCG  387 (581)
Q Consensus       322 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  387 (581)
                      +.|..+|+++....+ .+...|..++..+.       ..|++       ++|..+|++....-.|.+...|..++..+..
T Consensus        33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            445555555555321 24445555544443       23554       6677777766653124455566666666667


Q ss_pred             CCChHHHHHHHHHHhhCCCCCC-hh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH-hcCCHHHH
Q 008022          388 CGRVDWAMKLLDQMKQYECLPN-IT-TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVC-RAGMVVEA  464 (581)
Q Consensus       388 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a  464 (581)
                      .|++++|..+|+++.+..  |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|
T Consensus       112 ~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            777777777777766643  32 22 56666666667777777777777776643 333444433322221 25777777


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022          465 FQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKM  542 (581)
Q Consensus       465 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (581)
                      .++|+++++.. +.+...|..++..+.+.|++++|+.+|+++.....+.|  ....|..++..+...|+.++|..+++++
T Consensus       189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77777776653 33566677777777777777777777777776323344  3446666666677777777777777777


Q ss_pred             HHc
Q 008022          543 LNE  545 (581)
Q Consensus       543 ~~~  545 (581)
                      .+.
T Consensus       268 ~~~  270 (308)
T 2ond_A          268 FTA  270 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.57  E-value=6.5e-14  Score=129.07  Aligned_cols=133  Identities=13%  Similarity=-0.028  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HH
Q 008022          447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGT-----KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD----II  517 (581)
Q Consensus       447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~  517 (581)
                      ++..+...+...|++++|.+.+++......     .....++..++..+...|++++|.+.++++.+...-.++    ..
T Consensus       185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  264 (338)
T 3ro2_A          185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ  264 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHH
Confidence            444555555556666666666555543210     001224555555566666666666666555431100011    33


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-CHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          518 SYTSLLWGICNSGGMQEAFIYLQKMLNEG----ICP-NFATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      ++..++..+...|++++|...++++++..    ..+ ...++..+...+...|++++|.+.+++.++
T Consensus       265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  331 (338)
T 3ro2_A          265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  331 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            45555556666666666666665554320    000 022444555555666666666666665543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.57  E-value=1.5e-12  Score=117.67  Aligned_cols=216  Identities=8%  Similarity=-0.026  Sum_probs=176.7

Q ss_pred             hHHHHHHHHHhhCCCCCChhhHHHHHHHhh-------cCCCh-------HHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 008022          357 HQAHSLIEKMAFENCPPNTVTFNTFIKGLC-------GCGRV-------DWAMKLLDQMKQYECLPNITTYNELLDGLLR  422 (581)
Q Consensus       357 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  422 (581)
                      ++|..+|++..... |.++..|..++..+.       ..|++       ++|..+|++..+.-.+.+...|..++..+..
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            67888999988764 678888888887775       35886       8999999999883223456689999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCcc-cHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH-hcCCHHHH
Q 008022          423 VNRVKEAFELVTEIEKCGIQL-NIV-TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYC-KQGKVNNA  499 (581)
Q Consensus       423 ~~~~~~a~~~~~~~~~~~~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A  499 (581)
                      .|++++|.++|+++.+.  .| +.. .|..++..+.+.|++++|.++|+++++.+ +++...|...+.... ..|++++|
T Consensus       112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999985  44 344 88999999999999999999999999875 445666655544433 37999999


Q ss_pred             HHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCC--CHHhHHHHHHHHHhccCCCChHHHHH
Q 008022          500 IQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEG-ICP--NFATWNVLVRSLFSNLGHLGPVYILD  575 (581)
Q Consensus       500 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~  575 (581)
                      .++|+++.+   ..| +...|..++..+.+.|++++|+.+|+++++.. ++|  ....|..++......|+.++|..+++
T Consensus       189 ~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~  265 (308)
T 2ond_A          189 FKIFELGLK---KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             HHHHHHHHH---HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHH---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999988   345 67889999999999999999999999999852 455  35678888888888999999999999


Q ss_pred             HHhh
Q 008022          576 DIMA  579 (581)
Q Consensus       576 ~~~~  579 (581)
                      ++++
T Consensus       266 ~a~~  269 (308)
T 2ond_A          266 RRFT  269 (308)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.56  E-value=7.4e-13  Score=109.80  Aligned_cols=171  Identities=13%  Similarity=0.070  Sum_probs=131.9

Q ss_pred             ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 008022          339 NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLD  418 (581)
Q Consensus       339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  418 (581)
                      ++.+|..+...+...|++++|+..|++..+.. |.+...+..+..++...|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            45667777777777778888888777777664 5667777778888888888888888888776654 334556666777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022          419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN  498 (581)
Q Consensus       419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  498 (581)
                      .+...++++.+...+....+.. +.+...+..+...+.+.|++++|++.+++.++.. +.+..++..++.+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            7788888888888888887763 5567778888888888888888888888888865 4577788888888888899999


Q ss_pred             HHHHHHHHhcCCCCCCCH
Q 008022          499 AIQLLDRIRGGGEWNPDI  516 (581)
Q Consensus       499 A~~~~~~~~~~~~~~p~~  516 (581)
                      |++.|+++.+   +.|+.
T Consensus       160 A~~~~~~al~---~~p~~  174 (184)
T 3vtx_A          160 AVKYFKKALE---KEEKK  174 (184)
T ss_dssp             HHHHHHHHHH---TTHHH
T ss_pred             HHHHHHHHHh---CCccC
Confidence            9999988887   45643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.56  E-value=9.7e-14  Score=133.27  Aligned_cols=214  Identities=10%  Similarity=-0.031  Sum_probs=156.4

Q ss_pred             CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCh-hHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHH
Q 008022          320 NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMF-HQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLL  398 (581)
Q Consensus       320 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  398 (581)
                      .++.+...++...... +.+...+..+...+...|++ ++|...|++..... |.+...+..+..+|...|++++|...|
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            3566666666655442 23566777777778888888 88888888877764 556777788888888888888888888


Q ss_pred             HHHhhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc--------CCH
Q 008022          399 DQMKQYECLPNITTYNELLDGLLRV---------NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA--------GMV  461 (581)
Q Consensus       399 ~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~  461 (581)
                      ++..+..  |+...+..+...+...         |++++|++.+++..+.. +.+...+..+..+|...        |++
T Consensus       161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            8877764  5566777777777777         78888888888877763 44567777777777777        778


Q ss_pred             HHHHHHHHHHHHCCCC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHH
Q 008022          462 VEAFQLLGKMLIEGTK---LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFI  537 (581)
Q Consensus       462 ~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~  537 (581)
                      ++|.+.|++++... +   .+...+..++.+|...|++++|++.|+++.+   +.| +...+..+..++...|++++|++
T Consensus       238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~a~~~l~~~~~~lg~~~eAi~  313 (474)
T 4abn_A          238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA---LDPAWPEPQQREQQLLEFLSRLTSLLE  313 (474)
T ss_dssp             HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888887753 3   4677778888888888888888888888777   445 45567777777777777777776


Q ss_pred             HHHHH
Q 008022          538 YLQKM  542 (581)
Q Consensus       538 ~~~~~  542 (581)
                      .+.++
T Consensus       314 ~~~~~  318 (474)
T 4abn_A          314 SKGKT  318 (474)
T ss_dssp             HTTTC
T ss_pred             Hhccc
Confidence            65444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.56  E-value=1.1e-13  Score=127.62  Aligned_cols=155  Identities=13%  Similarity=0.027  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHhhC----C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-cccHHHHHHHHHHHHhcCC
Q 008022          391 VDWAMKLLDQMKQY----E-CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC----GI-QLNIVTYNTILHGVCRAGM  460 (581)
Q Consensus       391 ~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~  460 (581)
                      +++|...+++....    + .......+..+...+...|++++|...+++..+.    +. .....++..+...+...|+
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  238 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  238 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence            66666666554321    1 0112336677778888899999999998887643    11 1113367778888899999


Q ss_pred             HHHHHHHHHHHHHCCCC-c----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC----CHHhHHHHHHHHHccCC
Q 008022          461 VVEAFQLLGKMLIEGTK-L----DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP----DIISYTSLLWGICNSGG  531 (581)
Q Consensus       461 ~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~  531 (581)
                      +++|...+++....... .    ...++..++.+|...|++++|...++++.+.....+    ...++..++..|...|+
T Consensus       239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  318 (338)
T 3ro2_A          239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN  318 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            99999999988754111 1    155678888999999999999999998865211111    24477889999999999


Q ss_pred             HHHHHHHHHHHHHc
Q 008022          532 MQEAFIYLQKMLNE  545 (581)
Q Consensus       532 ~~~A~~~~~~~~~~  545 (581)
                      +++|...++++.+.
T Consensus       319 ~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          319 HDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999999999873

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.55  E-value=2.7e-13  Score=130.16  Aligned_cols=212  Identities=9%  Similarity=-0.028  Sum_probs=137.0

Q ss_pred             hhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHH
Q 008022          286 MDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNL-LGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIE  364 (581)
Q Consensus       286 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  364 (581)
                      +++++..+...... .+.+...+..+...+...|++ ++|+..|++..+..+. +...+..+..+|...|++++|...|+
T Consensus        84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            44555555554443 234566666677777777777 7777777776665322 45566667777777777777777777


Q ss_pred             HHhhCCCCCChhhHHHHHHHhhcC---------CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc--------CCHH
Q 008022          365 KMAFENCPPNTVTFNTFIKGLCGC---------GRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRV--------NRVK  427 (581)
Q Consensus       365 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~  427 (581)
                      +.....  |+...+..+..++...         |++++|...|++..+.. +.+...|..+..+|...        |+++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            776653  4456666667777776         77777777777766654 33455666666666666        6677


Q ss_pred             HHHHHHHHHHHcCCc---ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008022          428 EAFELVTEIEKCGIQ---LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLD  504 (581)
Q Consensus       428 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  504 (581)
                      +|++.|++..+.. +   .+...+..+..+|...|++++|.+.|+++.... +.+...+..+..++...|++++|++.+.
T Consensus       239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7777777776653 2   356666777777777777777777777776654 3355566666777777777766666443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.54  E-value=9.5e-13  Score=123.45  Aligned_cols=231  Identities=9%  Similarity=-0.012  Sum_probs=177.0

Q ss_pred             HHHHHHccCChhHHHHHHHHHhhCC--CCC---ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCC------CCChhhHH
Q 008022          346 MVKVLCQNNMFHQAHSLIEKMAFEN--CPP---NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC------LPNITTYN  414 (581)
Q Consensus       346 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~  414 (581)
                      ....+...|++++|...+++....-  .+.   ...++..+...|...|+++.|...+++..+...      +....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            5566788999999999999987641  111   346788899999999999999999998854211      11234678


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc----CCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHH
Q 008022          415 ELLDGLLRVNRVKEAFELVTEIEKC----GIQ-LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----GT-KLDAITFN  484 (581)
Q Consensus       415 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~  484 (581)
                      .+...|...|++++|.+.+++..+.    +.+ ....++..+...|...|++++|.+.+++.+..    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            8889999999999999999988753    111 11247888999999999999999999999873    22 34567789


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhcCCCC--CC-CHHhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCC-HHhHHHH
Q 008022          485 IIIYAYCKQGKVNNAIQLLDRIRGGGEW--NP-DIISYTSLLWGICNSGG---MQEAFIYLQKMLNEGICPN-FATWNVL  557 (581)
Q Consensus       485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l  557 (581)
                      .++.+|...|++++|.+.++++.+....  .| ....+..+...+...|+   +++|+.++++..   ..|+ ...+..+
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~~~l  345 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFAIDV  345 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHHHHH
Confidence            9999999999999999999998762111  12 12335678888899999   777888777762   3333 4567788


Q ss_pred             HHHHHhccCCCChHHHHHHHhh
Q 008022          558 VRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       558 ~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      ...+...|++++|.+.+++.++
T Consensus       346 a~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          346 AKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8999999999999999998765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.50  E-value=4e-13  Score=122.17  Aligned_cols=236  Identities=12%  Similarity=0.004  Sum_probs=125.7

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhC------C-C
Q 008022          306 TTYSALIDGFAKAGNLLGASQIWNRMISN-------GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE------N-C  371 (581)
Q Consensus       306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~  371 (581)
                      .++..+...+...|++++|..+++++.+.       ..+.....+..+...+...|++++|...+++....      + .
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  107 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH  107 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            34444444455555555555555444431       11112233444455555555555555555554332      1 1


Q ss_pred             CCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC------CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 008022          372 PPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY------EC-LPNITTYNELLDGLLRVNRVKEAFELVTEIEKC-----  439 (581)
Q Consensus       372 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----  439 (581)
                      +.....+..+...+...|++++|...+++..+.      +. +.....+..+...+...|++++|.+.++++.+.     
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  187 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL  187 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            223445556666666666666666666665432      11 122345666677777777777777777776653     


Q ss_pred             -C-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCc-------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 008022          440 -G-IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG-------TKL-------DAITFNIIIYAYCKQGKVNNAIQLL  503 (581)
Q Consensus       440 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~  503 (581)
                       + .+....++..+...+...|++++|.+.++++....       ..+       ....+......+...+.+.++...+
T Consensus       188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  267 (311)
T 3nf1_A          188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY  267 (311)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence             1 12234456677777777888888888887777531       011       1122233334444556667777777


Q ss_pred             HHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          504 DRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       504 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      +....   ..| ...++..++.+|...|++++|.++++++++
T Consensus       268 ~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          268 KACKV---DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhcCC---CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77665   234 566788888888889999999999888875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.47  E-value=1.2e-12  Score=119.01  Aligned_cols=239  Identities=14%  Similarity=-0.017  Sum_probs=165.9

Q ss_pred             hhhHHHHHHHHHccCChhHHHHHHHHHhhC-------CCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC------C-
Q 008022          340 VVAYTCMVKVLCQNNMFHQAHSLIEKMAFE-------NCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY------E-  405 (581)
Q Consensus       340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-  405 (581)
                      ..++..+...+...|++++|..+++++...       ..+.....+..+...+...|++++|...+++....      + 
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            456777888899999999999999998763       22445667788889999999999999999988653      1 


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 008022          406 CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC------GI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----  474 (581)
Q Consensus       406 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----  474 (581)
                      .+.....+..+...+...|++++|...++++.+.      +. +.....+..+...+...|++++|.++++++...    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            1223457788888999999999999999988754      11 234556778888899999999999999999875    


Q ss_pred             --CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC------CCCCCH-H------hHHHHHHHHHccCCHHHHHHH
Q 008022          475 --GTKL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG------EWNPDI-I------SYTSLLWGICNSGGMQEAFIY  538 (581)
Q Consensus       475 --~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~p~~-~------~~~~l~~~~~~~g~~~~A~~~  538 (581)
                        +..| ...++..++.+|...|++++|.+.++++.+..      ...+.. .      .+..+...+...+.+.+|...
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  266 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW  266 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence              1122 34568888999999999999999999987511      111211 1      122223333445556666667


Q ss_pred             HHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          539 LQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      +++.... .+....++..+..++...|++++|.+.+++.++
T Consensus       267 ~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          267 YKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7776653 123456788899999999999999999998875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.47  E-value=1.1e-11  Score=106.75  Aligned_cols=206  Identities=12%  Similarity=-0.006  Sum_probs=145.7

Q ss_pred             CChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHH
Q 008022          338 PNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELL  417 (581)
Q Consensus       338 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  417 (581)
                      .|+..+......+...|++++|...|++......+++...+..+..++...|++++|+..+++..+.. +.+...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            35667777888888888999999988888877533677777778888888888888888888888765 33556777888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCcccH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHH
Q 008022          418 DGLLRVNRVKEAFELVTEIEKCGIQLNI-------VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL--DAITFNIIIY  488 (581)
Q Consensus       418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~  488 (581)
                      ..+...|++++|+..+++..+.. +.+.       ..|..+...+...|++++|++.++++++.. +.  +...+..++.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~  161 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence            88888888888888888888763 3344       456777777888888888888888888753 33  3567777777


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 008022          489 AYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVL  557 (581)
Q Consensus       489 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  557 (581)
                      +|...|     ...++++.....  .+...+....  ....+.+++|+..++++.+.  .|+......+
T Consensus       162 ~~~~~~-----~~~~~~a~~~~~--~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~  219 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLAS--SNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQM  219 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGTT--TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHhccc--CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence            776544     344555555221  2333333332  34456689999999999884  5665443333

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.47  E-value=3.6e-12  Score=127.08  Aligned_cols=164  Identities=13%  Similarity=0.040  Sum_probs=80.7

Q ss_pred             hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Q 008022          375 TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG  454 (581)
Q Consensus       375 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  454 (581)
                      ...++.+..++...|++++|++.|++..+.. +.+...+..+..+|.+.|++++|++.|++.++.. +.+...|..+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            4445555555555555555555555554433 2233444555555555555555555555554432 2234445555555


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHH
Q 008022          455 VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQ  533 (581)
Q Consensus       455 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~  533 (581)
                      +...|++++|++.|+++++.. +.+...+..++.+|...|++++|++.|+++.+   +.| +...+..++.+|...|+++
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~---l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALK---LKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHhhhhhHHHhcccHH
Confidence            555555555555555555442 22344455555555555555555555555544   334 3444555555555555555


Q ss_pred             HHHHHHHHHHH
Q 008022          534 EAFIYLQKMLN  544 (581)
Q Consensus       534 ~A~~~~~~~~~  544 (581)
                      +|.+.++++++
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.46  E-value=1.3e-11  Score=115.44  Aligned_cols=230  Identities=12%  Similarity=-0.001  Sum_probs=143.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHccCChhHHHHHHHHHhhCC--CC----CChhhHH
Q 008022          311 LIDGFAKAGNLLGASQIWNRMISNGC-SPN----VVAYTCMVKVLCQNNMFHQAHSLIEKMAFEN--CP----PNTVTFN  379 (581)
Q Consensus       311 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~  379 (581)
                      ....+...|++++|...+++...... .++    ..++..+...+...|+++.|...+++.....  ..    ....++.
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            34455677888888888877765411 112    2356666777777788887777777765421  01    1234566


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHhhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCcccHHHHHH
Q 008022          380 TFIKGLCGCGRVDWAMKLLDQMKQY----ECL-PNITTYNELLDGLLRVNRVKEAFELVTEIEKC----GIQLNIVTYNT  450 (581)
Q Consensus       380 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~  450 (581)
                      .+..+|...|++++|.+.+++..+.    +.. ....++..+..+|...|++++|.+.+++..+.    +.+....++..
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  266 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG  266 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence            6777777778888887777776442    111 11235666777777788888888887776651    22333566777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022          451 ILHGVCRAGMVVEAFQLLGKMLIEG----TKLDAITFNIIIYAYCKQGK---VNNAIQLLDRIRGGGEWNP-DIISYTSL  522 (581)
Q Consensus       451 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p-~~~~~~~l  522 (581)
                      +...+.+.|++++|...+++.....    .+.....+..+...|...|+   +.+|+..+++...    .| ....+..+
T Consensus       267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~----~~~~~~~~~~l  342 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL----HAYIEACARSA  342 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC----HHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC----hhHHHHHHHHH
Confidence            7777778888888888887777642    11123345555566666777   6666666665322    23 33455677


Q ss_pred             HHHHHccCCHHHHHHHHHHHHH
Q 008022          523 LWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      +..|...|++++|...|+++.+
T Consensus       343 a~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          343 AAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            7777788888888888777754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.46  E-value=1.3e-11  Score=115.29  Aligned_cols=230  Identities=10%  Similarity=-0.018  Sum_probs=174.8

Q ss_pred             HHHHHHccCChhHHHHHHHHHhhCC--CC---CChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCC-----CC-ChhhHH
Q 008022          346 MVKVLCQNNMFHQAHSLIEKMAFEN--CP---PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC-----LP-NITTYN  414 (581)
Q Consensus       346 l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~-~~~~~~  414 (581)
                      ....+...|++++|...+++.....  .+   ....++..+...|...|+++.|...+++..+...     .+ ...+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            4455778999999999999987541  11   1245678889999999999999999998754211     11 234678


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc----CCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHHH
Q 008022          415 ELLDGLLRVNRVKEAFELVTEIEKC----GIQ-LNIVTYNTILHGVCRAGMVVEAFQLLGKMLI-----EGTKLDAITFN  484 (581)
Q Consensus       415 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~  484 (581)
                      .+...|...|++++|.+.+++..+.    +.+ ....++..+..+|...|++++|.+.+++.+.     .. +....++.
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~  265 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence            8899999999999999999987753    111 1235678889999999999999999999987     43 33477889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhcCCCC--CCC-HHhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCC-HHhHHHH
Q 008022          485 IIIYAYCKQGKVNNAIQLLDRIRGGGEW--NPD-IISYTSLLWGICNSGG---MQEAFIYLQKMLNEGICPN-FATWNVL  557 (581)
Q Consensus       485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l  557 (581)
                      .++.+|.+.|++++|...++++.+....  .|. ...+..+...+...|+   +++|+.++++.   +..|+ ...+..+
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l  342 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA  342 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence            9999999999999999999998773322  222 3345666667778888   77888877763   22333 3466778


Q ss_pred             HHHHHhccCCCChHHHHHHHhh
Q 008022          558 VRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       558 ~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      ...+...|++++|.+.+++.++
T Consensus       343 a~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          343 AAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            8899999999999999998765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.43  E-value=5.1e-12  Score=126.04  Aligned_cols=165  Identities=10%  Similarity=0.005  Sum_probs=117.5

Q ss_pred             hhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 008022          340 VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDG  419 (581)
Q Consensus       340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  419 (581)
                      ...++.+..++.+.|++++|+..|++..+.. |.+...+..+..+|.+.|++++|+..|++..+.+ +.+...|..+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~   86 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            4567777777777777777777777777664 5566777777777777777777777777776654 2345667777777


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 008022          420 LLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNA  499 (581)
Q Consensus       420 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  499 (581)
                      +...|++++|++.|++..+.. +.+...+..+...+...|++++|++.|+++++.. +.+...+..++.+|...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence            777777777777777777653 4456677777777777777777777777777754 34566777777777777777777


Q ss_pred             HHHHHHHhc
Q 008022          500 IQLLDRIRG  508 (581)
Q Consensus       500 ~~~~~~~~~  508 (581)
                      .+.++++.+
T Consensus       165 ~~~~~kal~  173 (723)
T 4gyw_A          165 DERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777766

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.42  E-value=1.9e-11  Score=101.38  Aligned_cols=164  Identities=16%  Similarity=0.064  Sum_probs=116.7

Q ss_pred             hhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q 008022          376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGV  455 (581)
Q Consensus       376 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  455 (581)
                      ..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            345555666667777777777777766543 3355566677777777777777777777777653 44566777777777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHH
Q 008022          456 CRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQE  534 (581)
Q Consensus       456 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~  534 (581)
                      ...|++++|.+.++++.... +.+...+..++.++...|++++|.+.++++.+.   .| +..++..++..+...|++++
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RPNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHcCCHHH
Confidence            77788888888887777664 446677777778888888888888888887762   34 56677777888888888888


Q ss_pred             HHHHHHHHHHc
Q 008022          535 AFIYLQKMLNE  545 (581)
Q Consensus       535 A~~~~~~~~~~  545 (581)
                      |...++++.+.
T Consensus       163 A~~~~~~~~~~  173 (186)
T 3as5_A          163 ALPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            88888877653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.42  E-value=7.9e-11  Score=109.98  Aligned_cols=272  Identities=14%  Similarity=-0.002  Sum_probs=187.1

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHH----hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCh----hhHH
Q 008022          274 STLIHGLCSNGSMDEAVSVSYQMEENSCPPNVT----TYSALIDGFAKAGNLLGASQIWNRMISNGCS-PNV----VAYT  344 (581)
Q Consensus       274 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~  344 (581)
                      ......+...|++++|...+.+........+..    .+..+...+...|+++.|...+++....... ++.    .++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            344456778899999999999987754222322    4556667788899999999999887654211 122    1245


Q ss_pred             HHHHHHHccCChhHHHHHHHHHhhC----CCC--C-ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCC--C--ChhhH
Q 008022          345 CMVKVLCQNNMFHQAHSLIEKMAFE----NCP--P-NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECL--P--NITTY  413 (581)
Q Consensus       345 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~  413 (581)
                      .+...+...|++++|...+++....    +.+  | ....+..+...+...|++++|...+++.......  +  ....+
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            6677788899999999999887653    211  2 2345566778888999999999999887653211  1  22456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCcc-cHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCc---CHHHHH
Q 008022          414 NELLDGLLRVNRVKEAFELVTEIEKCGIQL-NIVTYN-----TILHGVCRAGMVVEAFQLLGKMLIEGTKL---DAITFN  484 (581)
Q Consensus       414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~  484 (581)
                      ..+...+...|++++|...+++.......+ ....+.     ..+..+...|++++|...+++.......+   ....+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            677788888999999999999876541111 111111     23344678899999999998887643221   133566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhcC---CCCCCCH-HhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          485 IIIYAYCKQGKVNNAIQLLDRIRGG---GEWNPDI-ISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       485 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      .++..+...|++++|...++++...   .+..++. ..+..+..++...|+.++|...++++...
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            7788899999999999999887541   1111122 36667788888999999999999998763

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=1.3e-11  Score=102.53  Aligned_cols=163  Identities=15%  Similarity=0.101  Sum_probs=142.9

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022          411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY  490 (581)
Q Consensus       411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  490 (581)
                      ..+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.... +.+...+..++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            456777888999999999999999988763 5578888999999999999999999999999874 55788899999999


Q ss_pred             HhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCC
Q 008022          491 CKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLG  569 (581)
Q Consensus       491 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  569 (581)
                      ...|++++|.+.++++...   .| +...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus        87 ~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEA---NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHhcCHHHHHHHHHHHHhc---CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999883   34 67788999999999999999999999998753 4457788889999999999999


Q ss_pred             hHHHHHHHhh
Q 008022          570 PVYILDDIMA  579 (581)
Q Consensus       570 a~~~~~~~~~  579 (581)
                      |.+.++++++
T Consensus       163 A~~~~~~~~~  172 (186)
T 3as5_A          163 ALPHFKKANE  172 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.39  E-value=5.9e-11  Score=102.12  Aligned_cols=207  Identities=8%  Similarity=-0.058  Sum_probs=161.5

Q ss_pred             CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 008022          302 PPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTF  381 (581)
Q Consensus       302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  381 (581)
                      +.++..+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..... |.+...+..+
T Consensus         4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   82 (228)
T 4i17_A            4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK   82 (228)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence            346788889999999999999999999999987654677788889999999999999999999999875 6678889999


Q ss_pred             HHHhhcCCChHHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc--cHHHHHHHH
Q 008022          382 IKGLCGCGRVDWAMKLLDQMKQYECLPNI-------TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQL--NIVTYNTIL  452 (581)
Q Consensus       382 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~  452 (581)
                      ..++...|++++|...+++..+.. +.+.       ..|..+...+...|++++|++.++++.+.. +.  +...+..+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~  160 (228)
T 4i17_A           83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence            999999999999999999998765 2334       457778888899999999999999999863 33  356777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-HHhHHHH
Q 008022          453 HGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-IISYTSL  522 (581)
Q Consensus       453 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l  522 (581)
                      .++...|     ...++++...+ ..+...+....  ....+.+++|+..++++.+   +.|+ ..+...+
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~---l~p~~~~~~~~l  220 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT---LSPNRTEIKQMQ  220 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh---cCCCCHHHHHHH
Confidence            7776544     44556665553 33444444333  3445779999999999998   5674 4344333

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.39  E-value=1.4e-10  Score=108.37  Aligned_cols=298  Identities=12%  Similarity=0.018  Sum_probs=209.6

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH----hHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCc----HHhHH
Q 008022          239 TSLLKGYLLGGRTHEASDLWNRMIREGFLPNVV----AYSTLIHGLCSNGSMDEAVSVSYQMEENSC-PPN----VTTYS  309 (581)
Q Consensus       239 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~  309 (581)
                      ......+...|++++|...+++........+..    .+..+...+...|++++|...+.+...... ..+    ..++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            344556778999999999999988764332332    456667788889999999999998765310 112    23356


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCC----ChhhH
Q 008022          310 ALIDGFAKAGNLLGASQIWNRMISN----GCS--P-NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPP----NTVTF  378 (581)
Q Consensus       310 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~  378 (581)
                      .+...+...|++++|...+++....    +..  | ....+..+...+...|++++|...+++........    ....+
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            6778889999999999999987653    211  2 23355667888999999999999999987643211    23456


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCcc---cHHHHH
Q 008022          379 NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI-TTYN-----ELLDGLLRVNRVKEAFELVTEIEKCGIQL---NIVTYN  449 (581)
Q Consensus       379 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~  449 (581)
                      ..+...+...|++++|...+++.......++. ..+.     ..+..+...|++++|...++........+   ....+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            67788899999999999999988653211211 1221     23344778999999999999887643211   133566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHH
Q 008022          450 TILHGVCRAGMVVEAFQLLGKMLIEGTKLD-----AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLW  524 (581)
Q Consensus       450 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~  524 (581)
                      .+...+...|++++|...+++.........     ..++..+..++...|++++|...++++..   +.+..    ....
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~---~~~~~----g~~~  330 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK---LANRT----GFIS  330 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHHHH----CCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---Hhccc----cHHH
Confidence            778889999999999999999987532211     13566778889999999999999999987   32221    2233


Q ss_pred             HHHccCCHHHHHHHHHHHHHc
Q 008022          525 GICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       525 ~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      .+...|  +....+++.+...
T Consensus       331 ~~~~~g--~~~~~ll~~~~~~  349 (373)
T 1hz4_A          331 HFVIEG--EAMAQQLRQLIQL  349 (373)
T ss_dssp             HHHTTH--HHHHHHHHHHHHT
T ss_pred             HHHHcc--HHHHHHHHHHHhC
Confidence            445555  6777778888764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.36  E-value=8.8e-12  Score=111.46  Aligned_cols=229  Identities=16%  Similarity=-0.047  Sum_probs=155.8

Q ss_pred             HccCChhHHHHHHHHHhh-------CCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC------C-CCCChhhHHHH
Q 008022          351 CQNNMFHQAHSLIEKMAF-------ENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY------E-CLPNITTYNEL  416 (581)
Q Consensus       351 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l  416 (581)
                      ...|++++|...+++...       ...+....++..+...+...|++++|...++++.+.      + .+....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            446677777777666544       222334667888899999999999999999988653      1 12234578888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc------C-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCcCHHH
Q 008022          417 LDGLLRVNRVKEAFELVTEIEKC------G-IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE------G-TKLDAIT  482 (581)
Q Consensus       417 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~  482 (581)
                      ...+...|++++|.+.++++.+.      . .+....++..+...+...|++++|...++++...      + .+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            89999999999999999988754      1 1334667888888999999999999999999975      1 1223567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhcC------CCCCC-CHHhHHHHHHHHHccCCH------HHHHHHHHHHHHcCCCC
Q 008022          483 FNIIIYAYCKQGKVNNAIQLLDRIRGG------GEWNP-DIISYTSLLWGICNSGGM------QEAFIYLQKMLNEGICP  549 (581)
Q Consensus       483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~p-~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~  549 (581)
                      +..++.+|...|++++|.+.++++.+.      ....+ ....|..+...+...+..      ..+...++.... ..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            888899999999999999999998762      11223 223444444444433332      222222222211 0112


Q ss_pred             CHHhHHHHHHHHHhccCCCChHHHHHHHhhc
Q 008022          550 NFATWNVLVRSLFSNLGHLGPVYILDDIMAN  580 (581)
Q Consensus       550 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  580 (581)
                      ....+..+...+...|++++|.+++++.++.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            2456778888999999999999999998864

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.32  E-value=2.7e-09  Score=92.94  Aligned_cols=178  Identities=10%  Similarity=-0.008  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHhhcCCChHHHHHHHHHHh
Q 008022          324 ASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENC-PPNTVTFNTFIKGLCGCGRVDWAMKLLDQMK  402 (581)
Q Consensus       324 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  402 (581)
                      +...+++....+ .++...+..+..++...|++++|+.++.+....+. ..+...+..++..+.+.|+++.|.+.++.|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455555555443 23444444556666666777777777766655431 1345555566666667777777777776665


Q ss_pred             hCCCCC-----ChhhHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022          403 QYECLP-----NITTYNELLDG--LLRVN--RVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLI  473 (581)
Q Consensus       403 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  473 (581)
                      +..  |     +..+...++.+  ....|  ++.+|..+|+++.+.  .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus       164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            532  3     23344444444  22223  666777777776543  33322223333356666777777776665543


Q ss_pred             CC---------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          474 EG---------TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       474 ~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ..         -+.++.++..++......|+  +|.++++++.+
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~  281 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK  281 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence            20         02345555455545555555  66666666666

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.31  E-value=1.2e-10  Score=104.13  Aligned_cols=193  Identities=13%  Similarity=-0.016  Sum_probs=129.8

Q ss_pred             HHHccCChhHHHHHHHHHhhC----CCCC-ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCC---CC--ChhhHHHHHH
Q 008022          349 VLCQNNMFHQAHSLIEKMAFE----NCPP-NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC---LP--NITTYNELLD  418 (581)
Q Consensus       349 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~  418 (581)
                      .|...|++++|...+++....    +.++ ...++..+..+|...|++++|+..+++..+...   .+  ...++..+..
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455566666666666655432    1111 134666777777777777777777776644210   01  1346777888


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHcCCcc-c----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH------HHHHHH
Q 008022          419 GLLRV-NRVKEAFELVTEIEKCGIQL-N----IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA------ITFNII  486 (581)
Q Consensus       419 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l  486 (581)
                      .|... |++++|+..|++..+..... +    ..++..+...+...|++++|+..++++.........      ..+..+
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  205 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            88886 99999999999887641110 1    356788889999999999999999999986433221      257788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH------hHHHHHHHHH--ccCCHHHHHHHHHHHHH
Q 008022          487 IYAYCKQGKVNNAIQLLDRIRGGGEWNPDII------SYTSLLWGIC--NSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       487 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~A~~~~~~~~~  544 (581)
                      +.++...|++++|+..+++..+   +.|+..      .+..++..+.  ..+++++|+..|+++..
T Consensus       206 g~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          206 GLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            8899999999999999999987   445321      3444555554  45778899998888764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.29  E-value=4e-11  Score=107.17  Aligned_cols=226  Identities=12%  Similarity=-0.024  Sum_probs=161.3

Q ss_pred             HhcCCHHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhC------C-CCCChhhHHHH
Q 008022          316 AKAGNLLGASQIWNRMISN-------GCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFE------N-CPPNTVTFNTF  381 (581)
Q Consensus       316 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l  381 (581)
                      ...|+++.|...+++..+.       ..+....++..+...+...|++++|...+++....      + .+....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4567777777777766552       21224557888899999999999999999998754      1 13345678889


Q ss_pred             HHHhhcCCChHHHHHHHHHHhhC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CcccHHH
Q 008022          382 IKGLCGCGRVDWAMKLLDQMKQY------E-CLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC------G-IQLNIVT  447 (581)
Q Consensus       382 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~  447 (581)
                      ...+...|++++|...+++....      . .+.....+..+...+...|++++|...++++.+.      + .+....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999998653      1 1233557888899999999999999999998764      1 1234567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCcCHHHHHHHHHHHHhcCCHH------HHHHHHHHHhcCCCCC
Q 008022          448 YNTILHGVCRAGMVVEAFQLLGKMLIEG--------TKLDAITFNIIIYAYCKQGKVN------NAIQLLDRIRGGGEWN  513 (581)
Q Consensus       448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~  513 (581)
                      +..+...+...|++++|..+++++....        .......+..+...+...+...      .+...++....   ..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  248 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV---DS  248 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC---CC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC---CC
Confidence            8889999999999999999999999741        1122334444444444444333      33333332222   22


Q ss_pred             C-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          514 P-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       514 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      | ...++..++..|...|++++|..+++++++
T Consensus       249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3 455788999999999999999999999875

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.28  E-value=1.2e-10  Score=102.56  Aligned_cols=190  Identities=7%  Similarity=-0.053  Sum_probs=101.5

Q ss_pred             hhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC---hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCC-CC-hhhHH
Q 008022          340 VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPN---TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECL-PN-ITTYN  414 (581)
Q Consensus       340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~  414 (581)
                      ...+..+...+.+.|++++|...|+++.... |.+   ...+..+..++...|++++|...|+.+.+.... |. ...+.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            3444445555555566666666666555542 222   344455555555555555555555555543210 11 22344


Q ss_pred             HHHHHHHh--------cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008022          415 ELLDGLLR--------VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNII  486 (581)
Q Consensus       415 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  486 (581)
                      .+..++..        .|++++|+..|+++.+.. +.+......+..              +.....    .-...+..+
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~----~~~~~~~~l  154 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRA----KLARKQYEA  154 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHH----HHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHH----HHHHHHHHH
Confidence            44444554        555555555555555432 111111111100              000000    000113567


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHcc----------CCHHHHHHHHHHHHHcCCCCCH
Q 008022          487 IYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNS----------GGMQEAFIYLQKMLNEGICPNF  551 (581)
Q Consensus       487 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~  551 (581)
                      +.+|...|++++|+..|+++.+..+-.| ....+..++.+|...          |++++|...|+++++.  .|+.
T Consensus       155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~  228 (261)
T 3qky_A          155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS  228 (261)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence            8888889999999999988887333222 245677788888765          8888999999988874  4543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.28  E-value=3.2e-09  Score=92.46  Aligned_cols=187  Identities=7%  Similarity=-0.070  Sum_probs=138.6

Q ss_pred             HHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          359 AHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYEC-LPNITTYNELLDGLLRVNRVKEAFELVTEIE  437 (581)
Q Consensus       359 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  437 (581)
                      |+..+++....+ +++...+..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            677888877665 45566667888899999999999999999877653 2356677888999999999999999999998


Q ss_pred             HcCCcc-----cHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          438 KCGIQL-----NIVTYNTILHGVC--RAG--MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       438 ~~~~~~-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +.  .|     +..+...++.++.  ..|  ++++|..+|+++...  .|+..+...+..++.+.|++++|.+.++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            75  55     3555555665533  334  899999999998765  34433333444489999999999999997765


Q ss_pred             CCC----C---CC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH
Q 008022          509 GGE----W---NP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATW  554 (581)
Q Consensus       509 ~~~----~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  554 (581)
                      ..+    .   .| ++.++..++......|+  +|.++++++.+  ..|+....
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp~i  289 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHAFI  289 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCHHH
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCChHH
Confidence            210    0   24 66777677766666786  89999999998  46775543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.26  E-value=2.9e-10  Score=95.89  Aligned_cols=136  Identities=12%  Similarity=-0.007  Sum_probs=100.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008022          415 ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG  494 (581)
Q Consensus       415 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  494 (581)
                      .+..++...|++++|+..|++..+.. |.+...+..+...+...|++++|...|++++... +.+..++..++.+|...|
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence            37788888999999999999988874 5577888888889999999999999999998875 457788888888887665


Q ss_pred             C--HHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 008022          495 K--VNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVL  557 (581)
Q Consensus       495 ~--~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  557 (581)
                      +  .+.+...++++..   ..|....+...+.++...|++++|+..|+++++  +.|+......+
T Consensus       137 ~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l  196 (208)
T 3urz_A          137 EQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL  196 (208)
T ss_dssp             HHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence            4  4455666666554   223333455567777788999999999999987  56776554433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.25  E-value=1.5e-10  Score=103.55  Aligned_cols=206  Identities=12%  Similarity=-0.069  Sum_probs=148.5

Q ss_pred             ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC----CCCCC-hhhHHHHHHHHHhcCCHHHH
Q 008022          355 MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY----ECLPN-ITTYNELLDGLLRVNRVKEA  429 (581)
Q Consensus       355 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a  429 (581)
                      ++++|...+++.               ...|...|++++|...|.+..+.    +-++. ..+|+.+..+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477888887776               34577889999999999887542    21222 45788999999999999999


Q ss_pred             HHHHHHHHHc----CCcc-cHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCc-C----HHHHHHHHHHHHhcCCHHH
Q 008022          430 FELVTEIEKC----GIQL-NIVTYNTILHGVCRA-GMVVEAFQLLGKMLIEGTKL-D----AITFNIIIYAYCKQGKVNN  498 (581)
Q Consensus       430 ~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~  498 (581)
                      +..+++..+.    |-.. ...++..+...|... |++++|+..+++.+...... +    ..++..++..+...|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            9999988753    2111 145788889999996 99999999999998752111 1    4568899999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCH-----HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH------hHHHHHHHHH--hcc
Q 008022          499 AIQLLDRIRGGGEWNPDI-----ISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA------TWNVLVRSLF--SNL  565 (581)
Q Consensus       499 A~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~--~~g  565 (581)
                      |+..++++.+..+-.+..     ..+..++.++...|++++|...|++.++  +.|+..      .+..++.++.  ..+
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~  254 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE  254 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence            999999999833222221     1577888899999999999999999986  345422      2344455553  234


Q ss_pred             CCCChHHHHHHH
Q 008022          566 GHLGPVYILDDI  577 (581)
Q Consensus       566 ~~~~a~~~~~~~  577 (581)
                      ++++|++.++++
T Consensus       255 ~~~~A~~~~~~~  266 (292)
T 1qqe_A          255 QLSEHCKEFDNF  266 (292)
T ss_dssp             THHHHHHHHTTS
T ss_pred             HHHHHHHHhccC
Confidence            455666666544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.23  E-value=2.6e-10  Score=114.57  Aligned_cols=169  Identities=10%  Similarity=-0.064  Sum_probs=91.2

Q ss_pred             hcCCChHHHHHHHHHHh--------hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Q 008022          386 CGCGRVDWAMKLLDQMK--------QYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR  457 (581)
Q Consensus       386 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  457 (581)
                      ...|++++|++.+++..        +.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            44556666666665555        222 2234455555555666666666666666655542 3344555555555666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHH
Q 008022          458 AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAF  536 (581)
Q Consensus       458 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~  536 (581)
                      .|++++|.+.|+++++.. +.+...+..++.+|.+.|++++ ++.|+++.+   +.| +...|..++.++...|++++|+
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence            666666666666665543 2345555556666666666666 666666555   334 4445556666666666666666


Q ss_pred             HHHHHHHHcCCCCC-HHhHHHHHHHHHh
Q 008022          537 IYLQKMLNEGICPN-FATWNVLVRSLFS  563 (581)
Q Consensus       537 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~  563 (581)
                      +.|+++++  +.|+ ...+..+..++..
T Consensus       555 ~~~~~al~--l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          555 RTLDEVPP--TSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHHHTSCT--TSTTHHHHHHHHHHHTC-
T ss_pred             HHHHhhcc--cCcccHHHHHHHHHHHHc
Confidence            66666554  2344 2334444444433

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.22  E-value=7.3e-10  Score=93.39  Aligned_cols=138  Identities=9%  Similarity=-0.078  Sum_probs=105.2

Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc
Q 008022          379 NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA  458 (581)
Q Consensus       379 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  458 (581)
                      ..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|+..|+++.+.. |.+...+..+...|...
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence            448888999999999999999998865 4467788899999999999999999999999874 55678888888887665


Q ss_pred             CC--HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHH
Q 008022          459 GM--VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLL  523 (581)
Q Consensus       459 ~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~  523 (581)
                      |+  .+.+...+.....  ..|....+...+.++...|++++|+..|+++.+   +.|+......+.
T Consensus       136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~l~  197 (208)
T 3urz_A          136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQKTLD  197 (208)
T ss_dssp             HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHHHHH
Confidence            54  4455666666542  233344556667788889999999999999998   678766544443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.22  E-value=1.1e-09  Score=85.14  Aligned_cols=129  Identities=20%  Similarity=0.217  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008022          412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYC  491 (581)
Q Consensus       412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  491 (581)
                      .+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..++..+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            45566777777888888888888877653 4456677777777888888888888888887764 446667777888888


Q ss_pred             hcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          492 KQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       492 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      ..|++++|.+.++++..   ..| +...+..++..+...|++++|...++++.+.
T Consensus        81 ~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALE---LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            88888888888888776   234 5667777888888888888888888888763

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.21  E-value=5.4e-10  Score=98.31  Aligned_cols=188  Identities=12%  Similarity=-0.012  Sum_probs=139.1

Q ss_pred             CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCChhHHHHHHHHHhhCCC--CCChh
Q 008022          302 PPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPN---VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENC--PPNTV  376 (581)
Q Consensus       302 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~  376 (581)
                      +.++..+......+.+.|++++|...|+++....+. +   ...+..+..++...|++++|...|++......  +....
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            456778888888999999999999999999887432 3   56778888999999999999999999988631  12345


Q ss_pred             hHHHHHHHhhc--------CCChHHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHH
Q 008022          377 TFNTFIKGLCG--------CGRVDWAMKLLDQMKQYECLPNI-TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVT  447 (581)
Q Consensus       377 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  447 (581)
                      .+..+..++..        .|++++|...|+++.+..  |+. .....+.              .+..+...    ....
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~  150 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARK  150 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHH
Confidence            67777888888        999999999999998754  433 2222211              11111110    1122


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhcCC
Q 008022          448 YNTILHGVCRAGMVVEAFQLLGKMLIEGTKL--DAITFNIIIYAYCKQ----------GKVNNAIQLLDRIRGGG  510 (581)
Q Consensus       448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~  510 (581)
                      +..+...|...|++++|+..+++++...+..  ....+..++.+|...          |++++|+..++++.+..
T Consensus       151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            5567778889999999999999998764221  345778888888866          88899999999998833

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.21  E-value=1.3e-10  Score=91.92  Aligned_cols=140  Identities=11%  Similarity=0.011  Sum_probs=77.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022          419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN  498 (581)
Q Consensus       419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  498 (581)
                      .+...|++++|+..++...... +.+...+..+...|.+.|++++|++.++++++.. +.+..+|..++.+|...|++++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence            3344555666666666555431 2223334455566666666666666666666653 3355666666666666666666


Q ss_pred             HHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHH-HHHHHHcCCCCC-HHhHHHHHHHHHhcc
Q 008022          499 AIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIY-LQKMLNEGICPN-FATWNVLVRSLFSNL  565 (581)
Q Consensus       499 A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~-~~~~~~l~~~~~~~g  565 (581)
                      |+..|+++.+   +.| ++.+|..++..|.+.|++++|.+. ++++++  +.|+ +..+......+...|
T Consensus        84 A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           84 AVECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence            6666666666   345 455666666666666666554443 456655  2343 334444444444444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.20  E-value=7.8e-11  Score=93.23  Aligned_cols=145  Identities=7%  Similarity=-0.109  Sum_probs=117.5

Q ss_pred             HHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC
Q 008022          381 FIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM  460 (581)
Q Consensus       381 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  460 (581)
                      |...+...|++++|+..++...... +.+...+..+...|...|++++|++.|++.++.. +.+...|..+..++...|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence            4566777899999999999887643 2234566788999999999999999999999874 5678899999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHhcCCCCCC-CHHhHHHHHHHHHccCC
Q 008022          461 VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQL-LDRIRGGGEWNP-DIISYTSLLWGICNSGG  531 (581)
Q Consensus       461 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~  531 (581)
                      +++|+..|+++++.. +.+..++..++.+|.+.|++++|.+. ++++.+   +.| ++.+|......+...|+
T Consensus        81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~---l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK---LFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCc
Confidence            999999999999875 45788999999999999999887665 588888   567 66777777777777664

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.19  E-value=3.1e-10  Score=114.01  Aligned_cols=173  Identities=11%  Similarity=-0.060  Sum_probs=145.1

Q ss_pred             HccCChhHHHHHHHHHh--------hCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 008022          351 CQNNMFHQAHSLIEKMA--------FENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLR  422 (581)
Q Consensus       351 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  422 (581)
                      ...|++++|+..+++..        ... +.+...+..+..++...|++++|...|+++.+.+ +.+...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            77899999999999987        443 5667788888999999999999999999998765 3466788889999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 008022          423 VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQL  502 (581)
Q Consensus       423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  502 (581)
                      .|++++|++.|++..+.. +.+...+..+..++.+.|++++ ++.|+++++.+ +.+...+..++.++.+.|++++|++.
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999874 5567888899999999999999 99999999875 45778899999999999999999999


Q ss_pred             HHHHhcCCCCCCC-HHhHHHHHHHHHccCC
Q 008022          503 LDRIRGGGEWNPD-IISYTSLLWGICNSGG  531 (581)
Q Consensus       503 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  531 (581)
                      |+++.+   +.|+ ...+..++.++...|+
T Consensus       557 ~~~al~---l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPP---TSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCT---TSTTHHHHHHHHHHHTC----
T ss_pred             HHhhcc---cCcccHHHHHHHHHHHHccCC
Confidence            999988   5674 5678888888876555

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.19  E-value=3.8e-08  Score=94.25  Aligned_cols=379  Identities=8%  Similarity=-0.037  Sum_probs=221.2

Q ss_pred             hcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-cchH
Q 008022            7 EKC-EIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENR-FSMI   84 (581)
Q Consensus         7 ~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a   84 (581)
                      ++| +++.|..+|+.++..-  |.              |+++.|.++|++....  .|++..|...+....+.++ .+..
T Consensus         6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i   67 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL   67 (493)
T ss_dssp             ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred             HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence            456 4888888888887752  22              8899999999999973  3799999999988887774 4667


Q ss_pred             HHHHHHHHhC-CC-CCChhhHHHHHHHHH----hcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHc---cCCHHHHH
Q 008022           85 NPIYSNMKRD-GM-EPNVFTYNILLKALC----KNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICK---LGQVEEAR  155 (581)
Q Consensus        85 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~  155 (581)
                      ..+|+.+... |. +.+...|...+..+.    .+++.+.+.++|++.+..  ++.  .+..+...|..   ......+.
T Consensus        68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~~  143 (493)
T 2uy1_A           68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITGK  143 (493)
T ss_dssp             HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccHH
Confidence            8888887764 42 446678888887764    356788999999999874  221  12333333321   11122222


Q ss_pred             HHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHcc--CC-----hhHHHHHHHHHHH
Q 008022          156 ELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDV--GN-----VETSLGILGQMFV  228 (581)
Q Consensus       156 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~-----~~~a~~~~~~~~~  228 (581)
                      .++...                .+.+..|...++.+...-...+...|...+..-...  |-     .+.+..+|+++..
T Consensus       144 ~~~~~~----------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~  207 (493)
T 2uy1_A          144 KIVGDT----------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD  207 (493)
T ss_dssp             HHHHHH----------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH----------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHH
Confidence            222211                012222333333322210001222444444332211  10     2345667777666


Q ss_pred             cCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHH-HHHHHHhC--------
Q 008022          229 RGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVS-VSYQMEEN--------  299 (581)
Q Consensus       229 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~--------  299 (581)
                      .. +.+...|...+..+...|+.+.|..++++....  +.+...+.    .|....+.++..+ +.......        
T Consensus       208 ~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~  280 (493)
T 2uy1_A          208 SF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKV  280 (493)
T ss_dssp             HT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------
T ss_pred             cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhh
Confidence            53 334566666666677777777777777777766  22222222    1222111222211 11111000        


Q ss_pred             CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-cCChhHHHHHHHHHhhCCCCCChhhH
Q 008022          300 SCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ-NNMFHQAHSLIEKMAFENCPPNTVTF  378 (581)
Q Consensus       300 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~  378 (581)
                      ........|...+....+.++.+.|..+|+++ .. ...+...|...+..-.. .++.+.|..+|+...... +.++..+
T Consensus       281 ~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~  357 (493)
T 2uy1_A          281 FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLK  357 (493)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHH
Confidence            00112355667777777788899999999998 32 12234444433332222 336999999999988763 4455566


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022          379 NTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEK  438 (581)
Q Consensus       379 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  438 (581)
                      ...++.....|+.+.|..+|+.+.     .....|...+..-...|+.+.+.++++....
T Consensus       358 ~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          358 EEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            667777788899999999999873     2566777777777778999999998888764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.18  E-value=1.6e-08  Score=96.87  Aligned_cols=105  Identities=8%  Similarity=0.018  Sum_probs=66.1

Q ss_pred             ccC-CHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCC-hhHHHHHHH
Q 008022          147 KLG-QVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGN-VETSLGILG  224 (581)
Q Consensus       147 ~~g-~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~  224 (581)
                      +.| +++.|+.+++.+          +..+-. ++++.+..+|+.....  .|+...|...+....+.++ .+....+|+
T Consensus         6 ~~~~~i~~aR~vyer~----------l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe   72 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHA----------RRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE   72 (493)
T ss_dssp             ------CCHHHHHHHH----------HHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred             HcCcchHHHHHHHHHH----------HHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence            345 366666665554          222222 8899999999998875  4688888888877766663 355667777


Q ss_pred             HHHHc-CC-CCCcccHHHHHHHHHc----cCCHHHHHHHHHHHHhC
Q 008022          225 QMFVR-GC-NPNIHSFTSLLKGYLL----GGRTHEASDLWNRMIRE  264 (581)
Q Consensus       225 ~~~~~-~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~  264 (581)
                      ..... |. +.+...|...+..+..    .++.+.+.++|++.+..
T Consensus        73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~  118 (493)
T 2uy1_A           73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT  118 (493)
T ss_dssp             HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence            76654 42 3355666666665432    35677888899988874

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.17  E-value=2.9e-09  Score=89.93  Aligned_cols=176  Identities=13%  Similarity=0.000  Sum_probs=114.4

Q ss_pred             HHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----CHHHHHHHH
Q 008022          358 QAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVN----RVKEAFELV  433 (581)
Q Consensus       358 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~  433 (581)
                      +|...|++..+.+   ++..+..+...|...+++++|...|++..+.+   +...+..+...|.. +    ++++|+++|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            3455555555542   45555666666666667777777777666643   44555555555555 5    677777777


Q ss_pred             HHHHHcCCcccHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 008022          434 TEIEKCGIQLNIVTYNTILHGVCR----AGMVVEAFQLLGKMLIEGTK-LDAITFNIIIYAYCK----QGKVNNAIQLLD  504 (581)
Q Consensus       434 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~  504 (581)
                      +...+.|   +...+..+...|..    .+++++|.++|++..+.+.. .++..+..|...|..    .+++++|+.+|+
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            7776644   45556666666665    67788888888877765421 126677777777777    677888888888


Q ss_pred             HHhcCCCCCCCHHhHHHHHHHHHcc-C-----CHHHHHHHHHHHHHcC
Q 008022          505 RIRGGGEWNPDIISYTSLLWGICNS-G-----GMQEAFIYLQKMLNEG  546 (581)
Q Consensus       505 ~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~  546 (581)
                      +..+.   .++...+..|...|... |     ++++|..+|+++.+.|
T Consensus       154 ~A~~~---~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          154 GSSSL---SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHT---SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHc---CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            88772   23455666777777543 2     7888888888887765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.17  E-value=4.6e-10  Score=91.82  Aligned_cols=158  Identities=13%  Similarity=0.005  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HH
Q 008022          413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA-YC  491 (581)
Q Consensus       413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~  491 (581)
                      +......+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++....  |+...+...... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence            3344455555666666666666555432 3345555556666666666666666666655432  233322222211 11


Q ss_pred             hcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhccCC
Q 008022          492 KQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN---FATWNVLVRSLFSNLGH  567 (581)
Q Consensus       492 ~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~  567 (581)
                      ..++..+|+..++++.+   ..| +...+..++.++...|++++|...|+++++.  .|+   ...+..+...+...|+.
T Consensus        86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~  160 (176)
T 2r5s_A           86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKV--NLGAQDGEVKKTFMDILSALGQG  160 (176)
T ss_dssp             HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTTTTTHHHHHHHHHHHHHCSS
T ss_pred             hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CcccChHHHHHHHHHHHHHhCCC
Confidence            22222345666666655   344 4556666666666666666666666666653  232   33555566666666666


Q ss_pred             CChHHHHHHHh
Q 008022          568 LGPVYILDDIM  578 (581)
Q Consensus       568 ~~a~~~~~~~~  578 (581)
                      ++|...+++.+
T Consensus       161 ~~A~~~y~~al  171 (176)
T 2r5s_A          161 NAIASKYRRQL  171 (176)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            66666666554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.14  E-value=7e-09  Score=87.53  Aligned_cols=173  Identities=12%  Similarity=-0.069  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC----CHHHHHHH
Q 008022          392 DWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG----MVVEAFQL  467 (581)
Q Consensus       392 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~  467 (581)
                      .+|.+.|++..+.+   +...+..+...|...+++++|++.|+...+.|   ++..+..+...|.. +    ++++|.++
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            35777888887754   67788888999999999999999999999875   56777777777777 6    89999999


Q ss_pred             HHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCC---HHhHHHHHHHHHc----cCCHHHHH
Q 008022          468 LGKMLIEGTKLDAITFNIIIYAYCK----QGKVNNAIQLLDRIRGGGEWNPD---IISYTSLLWGICN----SGGMQEAF  536 (581)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~  536 (581)
                      |++..+.+   +...+..+...|..    .+++++|+++|+++.+   ..|+   +.++..|...|..    .+++++|+
T Consensus        76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~  149 (212)
T 3rjv_A           76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKAS  149 (212)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            99998854   67788899999987    8899999999999998   3343   7888999999988    88999999


Q ss_pred             HHHHHHHHcCCCCCHHhHHHHHHHHHhc-c-----CCCChHHHHHHHhh
Q 008022          537 IYLQKMLNEGICPNFATWNVLVRSLFSN-L-----GHLGPVYILDDIMA  579 (581)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~  579 (581)
                      .+|++..+.  .++...+..+...+... |     +.++|+.++++..+
T Consensus       150 ~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~  196 (212)
T 3rjv_A          150 EYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL  196 (212)
T ss_dssp             HHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence            999999885  34555667777777653 2     67899999998765

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.14  E-value=1.4e-09  Score=96.84  Aligned_cols=164  Identities=14%  Similarity=-0.016  Sum_probs=118.2

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH-HHHH
Q 008022          408 PNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAIT-FNII  486 (581)
Q Consensus       408 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l  486 (581)
                      .+...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++....  |+... ....
T Consensus       115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~  191 (287)
T 3qou_A          115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA  191 (287)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred             CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence            344556667777778888888888888887763 4466777778888888888888888888877653  34332 2233


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHhHHHHHHHHH
Q 008022          487 IYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN---FATWNVLVRSLF  562 (581)
Q Consensus       487 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~  562 (581)
                      ...+...++.++|++.++++..   ..| +...+..++..+...|++++|+..|+++++.  .|+   ...+..++..+.
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~---~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~  266 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVA---ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILA  266 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHH
T ss_pred             HHHHHhhcccCccHHHHHHHHh---cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHH
Confidence            3446667777778888888777   345 5677788888888888888888888888774  343   456777888888


Q ss_pred             hccCCCChHHHHHHHhh
Q 008022          563 SNLGHLGPVYILDDIMA  579 (581)
Q Consensus       563 ~~g~~~~a~~~~~~~~~  579 (581)
                      ..|+.++|...+++.+.
T Consensus       267 ~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          267 ALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHCTTCHHHHHHHHHHH
T ss_pred             HcCCCCcHHHHHHHHHH
Confidence            88888888888877654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.14  E-value=1.5e-08  Score=89.43  Aligned_cols=231  Identities=10%  Similarity=-0.017  Sum_probs=175.7

Q ss_pred             HhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC--ChhHHHHHHHHHhhCCCCCChhhHHHHHHHh----hcC
Q 008022          316 AKAG-NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNN--MFHQAHSLIEKMAFENCPPNTVTFNTFIKGL----CGC  388 (581)
Q Consensus       316 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~  388 (581)
                      .+.| ..++|+..++.++..++. +...|+.--.++...+  ++++++.+++.+...+ |.+..+|+.-...+    ...
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l  120 (306)
T 3dra_A           43 MKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN  120 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence            3444 456899999999887533 4556777777777777  9999999999998875 56666776554444    444


Q ss_pred             ---CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC---
Q 008022          389 ---GRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVK--EAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM---  460 (581)
Q Consensus       389 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  460 (581)
                         +++++++.+++.+.+.. +-+...|+.-...+...|.++  ++++.++.+.+.. +-|...|+.-...+...+.   
T Consensus       121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~  198 (306)
T 3dra_A          121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLAT  198 (306)
T ss_dssp             TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCC
T ss_pred             cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccch
Confidence               78899999999998766 457778888777788888888  9999999999875 5577788777777777776   


Q ss_pred             ---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHH
Q 008022          461 ---VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN-AIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEA  535 (581)
Q Consensus       461 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A  535 (581)
                         ++++++.+++++... +-|...|+.+...+.+.|+..+ +..+..++.+.....| ++..+..++.+|.+.|+.++|
T Consensus       199 ~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A  277 (306)
T 3dra_A          199 DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES  277 (306)
T ss_dssp             HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence               889999999998875 5588889888888888887444 5667777766221123 677888899999999999999


Q ss_pred             HHHHHHHHHcCCCCCHH
Q 008022          536 FIYLQKMLNEGICPNFA  552 (581)
Q Consensus       536 ~~~~~~~~~~~~~~~~~  552 (581)
                      +++++.+.+. +.|-..
T Consensus       278 ~~~~~~l~~~-~Dpir~  293 (306)
T 3dra_A          278 RTVYDLLKSK-YNPIRS  293 (306)
T ss_dssp             HHHHHHHHHT-TCGGGH
T ss_pred             HHHHHHHHhc-cChHHH
Confidence            9999999863 345433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.13  E-value=2.8e-09  Score=82.77  Aligned_cols=129  Identities=16%  Similarity=0.159  Sum_probs=96.5

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Q 008022          377 TFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVC  456 (581)
Q Consensus       377 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  456 (581)
                      .+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            34556667777778888888777776544 3355666777777778888888888888877664 445667777788888


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          457 RAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       457 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ..|++++|.+.++++.... +.+..++..++.++...|++++|.+.++++..
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            8888888888888887764 44667777888888888888888888888776

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.13  E-value=8e-10  Score=90.37  Aligned_cols=164  Identities=13%  Similarity=0.007  Sum_probs=107.1

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH-H
Q 008022          377 TFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHG-V  455 (581)
Q Consensus       377 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~  455 (581)
                      .+......+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.+....  |+...+...... +
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~   84 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL   84 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence            34455566667777777777777765543 3345566677777777777777777777766542  243333222211 1


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHH
Q 008022          456 CRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEA  535 (581)
Q Consensus       456 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  535 (581)
                      ...++..+|...+++.+... +.+...+..++.++...|++++|+..++++.+..+-.++...+..++.++...|+.++|
T Consensus        85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            12223334677788877764 44677888888888888888888888888887322112345778888888888888888


Q ss_pred             HHHHHHHHH
Q 008022          536 FIYLQKMLN  544 (581)
Q Consensus       536 ~~~~~~~~~  544 (581)
                      ...|++.+.
T Consensus       164 ~~~y~~al~  172 (176)
T 2r5s_A          164 ASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.12  E-value=8.7e-08  Score=84.53  Aligned_cols=239  Identities=12%  Similarity=0.083  Sum_probs=175.4

Q ss_pred             HHHHhcCC-hhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHH----
Q 008022          278 HGLCSNGS-MDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAG--NLLGASQIWNRMISNGCSPNVVAYTCMVKVL----  350 (581)
Q Consensus       278 ~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----  350 (581)
                      .+..+.|. .++|+.++..+...+ |.+...|+.-...+...+  ++++++..++.+....+. +..+|+.-...+    
T Consensus        40 ~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~  117 (306)
T 3dra_A           40 LALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIM  117 (306)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHH
Confidence            33344454 468999998888764 456777888778888888  899999999998887543 445555444444    


Q ss_pred             Hcc---CChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChH--HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 008022          351 CQN---NMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVD--WAMKLLDQMKQYECLPNITTYNELLDGLLRVNR  425 (581)
Q Consensus       351 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  425 (581)
                      ...   +++++++.+++.+.... |.+..+|..-..+....|.++  ++++.++.+.+.+ +-|...|+.....+...+.
T Consensus       118 ~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          118 ELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             HHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGG
T ss_pred             HhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccc
Confidence            444   78889999999998875 678888887777777788887  8899999988766 3467777777777777666


Q ss_pred             ------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCCH
Q 008022          426 ------VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV-VEAFQLLGKMLIEG--TKLDAITFNIIIYAYCKQGKV  496 (581)
Q Consensus       426 ------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~  496 (581)
                            ++++++.++.++... +-|...|+.+...+.+.|+. +.+..+..++...+  -+.++..+..++.+|.+.|+.
T Consensus       196 ~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~  274 (306)
T 3dra_A          196 LATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY  274 (306)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred             cchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence                  888999998888774 66888888888888888774 44556666666532  134777888889999999999


Q ss_pred             HHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          497 NNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       497 ~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      ++|+++++.+.++  ..| ....|+..+
T Consensus       275 ~~A~~~~~~l~~~--~Dpir~~yW~~~~  300 (306)
T 3dra_A          275 NESRTVYDLLKSK--YNPIRSNFWDYQI  300 (306)
T ss_dssp             HHHHHHHHHHHHT--TCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--cChHHHHHHHHHH
Confidence            9999999998852  345 444555443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.11  E-value=1.5e-09  Score=96.61  Aligned_cols=169  Identities=15%  Similarity=0.005  Sum_probs=118.7

Q ss_pred             CCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHH-HH
Q 008022          372 PPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTY-NT  450 (581)
Q Consensus       372 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~  450 (581)
                      +.+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++.+...  .|+.... ..
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHH
Confidence            4455666667777778888888888888877654 335567777778888888888888888877664  3343322 22


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccC
Q 008022          451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSG  530 (581)
Q Consensus       451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  530 (581)
                      ....+...++.++|.+.+++.+... +.+...+..++.+|...|++++|++.+.++.+..+-..+...+..++..+...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence            2333556677777888888887764 456777888888888888888888888888772211112567788888888888


Q ss_pred             CHHHHHHHHHHHHH
Q 008022          531 GMQEAFIYLQKMLN  544 (581)
Q Consensus       531 ~~~~A~~~~~~~~~  544 (581)
                      +.++|...|++.+.
T Consensus       270 ~~~~a~~~~r~al~  283 (287)
T 3qou_A          270 TGDALASXYRRQLY  283 (287)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHH
Confidence            88888888877653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.10  E-value=8.8e-09  Score=88.01  Aligned_cols=168  Identities=8%  Similarity=-0.070  Sum_probs=89.1

Q ss_pred             hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH---HHHH
Q 008022          375 TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECL-P-NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNI---VTYN  449 (581)
Q Consensus       375 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~  449 (581)
                      +..+..+...+...|++++|+..|+.+.+.... | ....+..+..++...|++++|+..|+.+.+.... +.   ..+.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~~   82 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHHH
Confidence            344455566677777888888888777654311 1 1235666677777777888888877777765311 21   2333


Q ss_pred             HHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCcCHHHH-----------------HHHHHHHHhcC
Q 008022          450 TILHGVCR------------------AGMVVEAFQLLGKMLIEGTKLDAITF-----------------NIIIYAYCKQG  494 (581)
Q Consensus       450 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g  494 (581)
                      .+..++..                  .|++++|...|+++++.. +.+....                 ..++..|.+.|
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~  161 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG  161 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44444443                  345666666666666542 1122111                 22344455555


Q ss_pred             CHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          495 KVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       495 ~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      ++++|+..|+++.+..+-.| ....+..++.+|.+.|++++|.+.++.+..
T Consensus       162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence            55555555555554221111 113444555555555555555555555544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.07  E-value=2e-08  Score=85.83  Aligned_cols=182  Identities=5%  Similarity=-0.040  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChh---hHHH
Q 008022           31 GVFISVINSYRRVGLAEQALKMFYRIREFGLKPT--VKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVF---TYNI  105 (581)
Q Consensus        31 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~  105 (581)
                      ..+..++..+...|++++|+..|+++....+...  ...+..+..++.+.|++++|+..|+++.+.. +.+..   .+..
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~   83 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHH
Confidence            3444445555555555555555555554322111  2344444555555555555555555555432 11111   2222


Q ss_pred             HHHHH------------------HhcCChhHHHHHHHHHhhCCCCCCc-chHHHHHHHHHccCCHHHHHHHHHHhCCCcc
Q 008022          106 LLKAL------------------CKNNRVDGAYKLLVEMGNKGCAPDA-VSYTTIVSSICKLGQVEEARELAMRFGSGVS  166 (581)
Q Consensus       106 l~~~~------------------~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  166 (581)
                      +..++                  ...|++++|...|+++.+.  .|+. ..+..........+..             ..
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~-------------~~  148 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL-------------AK  148 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH-------------HH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH-------------HH
Confidence            22222                  2457788888888888776  2332 2222211111000000             01


Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCc----ccHHHHHHHHHccCChhHHHHHHHHHHHcC
Q 008022          167 VYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNV----ITYSTIISSLCDVGNVETSLGILGQMFVRG  230 (581)
Q Consensus       167 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  230 (581)
                      ....+...+.+.|++++|+..|+.+.+..  |+.    ..+..+..++.+.|+.++|...++.+...+
T Consensus       149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence            12345677888999999999999988763  332    457778889999999999999999888774

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.05  E-value=5e-09  Score=103.61  Aligned_cols=152  Identities=9%  Similarity=-0.075  Sum_probs=95.3

Q ss_pred             cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008022          353 NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFEL  432 (581)
Q Consensus       353 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  432 (581)
                      .|++++|...+++..... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            356777777777776653 4556677777777777777777777777776654 33456677777777777777777777


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhc
Q 008022          433 VTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ---GKVNNAIQLLDRIRG  508 (581)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~  508 (581)
                      +++..+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..++.++...   |++++|.+.++++.+
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            77777653 4456677777777777777777777777777654 34566677777777777   777777777777776

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.04  E-value=3.4e-09  Score=104.79  Aligned_cols=152  Identities=11%  Similarity=-0.080  Sum_probs=119.5

Q ss_pred             CCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHH
Q 008022          388 CGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQL  467 (581)
Q Consensus       388 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  467 (581)
                      .|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478999999999988765 3457788999999999999999999999999874 55688899999999999999999999


Q ss_pred             HHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHcc---CCHHHHHHHHHHHH
Q 008022          468 LGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNS---GGMQEAFIYLQKML  543 (581)
Q Consensus       468 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~  543 (581)
                      +++.++.. +.+...+..++.+|...|++++|++.++++.+   ..| +...+..++.++...   |++++|.+.+++++
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al  155 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ---LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV  155 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence            99999875 45788999999999999999999999999988   456 677889999999999   99999999999998


Q ss_pred             Hc
Q 008022          544 NE  545 (581)
Q Consensus       544 ~~  545 (581)
                      +.
T Consensus       156 ~~  157 (568)
T 2vsy_A          156 AQ  157 (568)
T ss_dssp             HH
T ss_pred             hc
Confidence            85

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.04  E-value=2.5e-09  Score=83.84  Aligned_cols=103  Identities=9%  Similarity=-0.074  Sum_probs=83.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022          444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSL  522 (581)
Q Consensus       444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l  522 (581)
                      +...+..+...+.+.|++++|...|++++... +.+...|..++.+|...|++++|++.|+++.+   +.| ++..|..+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~---l~P~~~~~~~~l  110 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA---LGKNDYTPVFHT  110 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCCCCcHHHHHH
Confidence            44567777778888889999999998888875 45778888888888889999999999988888   556 56788888


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022          523 LWGICNSGGMQEAFIYLQKMLNEGICPNFA  552 (581)
Q Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  552 (581)
                      +.+|...|++++|+..|+++++.  .|+..
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l--~~~~~  138 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQH--SNDEK  138 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence            88888999999999999888874  56654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.03  E-value=6e-09  Score=79.28  Aligned_cols=100  Identities=12%  Similarity=-0.002  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHH
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLW  524 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~  524 (581)
                      ..+......+.+.|++++|++.|++.++.. +.+..+|..++.+|.+.|++++|++.++++.+   +.| +...|..++.
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~   89 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR---LDSKFIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH---hhhhhhHHHHHHHH
Confidence            456666777888888888888888887764 45677788888888888888888888888877   455 5667788888


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCH
Q 008022          525 GICNSGGMQEAFIYLQKMLNEGICPNF  551 (581)
Q Consensus       525 ~~~~~g~~~~A~~~~~~~~~~~~~~~~  551 (581)
                      ++...|++++|++.|+++++.  .|+.
T Consensus        90 ~~~~~~~~~~A~~~~~~al~l--~P~~  114 (126)
T 4gco_A           90 CLVAMREWSKAQRAYEDALQV--DPSN  114 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred             HHHHCCCHHHHHHHHHHHHHH--CcCC
Confidence            888888888888888888773  4543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.01  E-value=3.4e-09  Score=95.49  Aligned_cols=226  Identities=10%  Similarity=-0.047  Sum_probs=129.7

Q ss_pred             cCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHH
Q 008022          283 NGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAK-AGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHS  361 (581)
Q Consensus       283 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  361 (581)
                      .|++++|.+++++..+.. +.          .+.. .++++.|...|.++               ...|...|++++|..
T Consensus         4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            455666776666655431 11          0122 45666666666554               345667788888887


Q ss_pred             HHHHHhhCCC----C-CChhhHHHHHHHhhcCCChHHHHHHHHHHhhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHH
Q 008022          362 LIEKMAFENC----P-PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY----ECLP-NITTYNELLDGLLRVNRVKEAFE  431 (581)
Q Consensus       362 ~~~~~~~~~~----~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~  431 (581)
                      .+.+......    + ....++..+..+|...|++++|+..|++..+.    +-.. ...++..+...|.. |++++|+.
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            7777654210    0 11345667777777778888888877776432    1111 12356666667766 77888877


Q ss_pred             HHHHHHHcCCcc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCCHHHHHH
Q 008022          432 LVTEIEKCGIQL-----NIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----GTKLD-AITFNIIIYAYCKQGKVNNAIQ  501 (581)
Q Consensus       432 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~  501 (581)
                      .+++..+.....     ...++..+...+...|++++|++.+++.+..    +..+. ...+..++.++...|++++|+.
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            777766431110     1345666777777777777777777777753    11111 2245556666667777777777


Q ss_pred             HHHHHhcCCCCCCCHH---hHHHHHHHHHccCCHHHHHH
Q 008022          502 LLDRIRGGGEWNPDII---SYTSLLWGICNSGGMQEAFI  537 (581)
Q Consensus       502 ~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~  537 (581)
                      .|++.. ..+-.++..   ....++.++ ..|+.+.+..
T Consensus       217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            777777 332222211   233344433 4566555555

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.99  E-value=7.2e-08  Score=86.19  Aligned_cols=166  Identities=13%  Similarity=-0.018  Sum_probs=89.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CcC--HHH
Q 008022          413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNI-----VTYNTILHGVCRAGMVVEAFQLLGKMLIEGT---KLD--AIT  482 (581)
Q Consensus       413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~~  482 (581)
                      +...+..+...|++++|.+.+....+.......     ..+..+...+...|++++|...+++++....   .+.  ..+
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            334455556666666666666665553211110     1222344445556677777777766664311   111  335


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhc---CCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCC-HH
Q 008022          483 FNIIIYAYCKQGKVNNAIQLLDRIRG---GGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKMLNEG----ICPN-FA  552 (581)
Q Consensus       483 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~  552 (581)
                      ++.++..|...|++++|+..++++.+   ..+..+  ...++..++.+|...|++++|+.+++++++..    .... ..
T Consensus       158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~  237 (293)
T 2qfc_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            66666777777777777777766652   111111  11456666667777777777777776664321    1111 34


Q ss_pred             hHHHHHHHHHhccCCCCh-HHHHHHHh
Q 008022          553 TWNVLVRSLFSNLGHLGP-VYILDDIM  578 (581)
Q Consensus       553 ~~~~l~~~~~~~g~~~~a-~~~~~~~~  578 (581)
                      ++..++.++...|++++| ...+++.+
T Consensus       238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          238 LYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            556666666666777777 55555543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.99  E-value=1.8e-08  Score=76.58  Aligned_cols=109  Identities=7%  Similarity=-0.064  Sum_probs=90.7

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022          411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY  490 (581)
Q Consensus       411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  490 (581)
                      ..+......+.+.|++++|++.|++.++.. +.+...|..+..++.+.|++++|++.+++.++.+ +.+...|..++.+|
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            456677888899999999999999988874 5678888889999999999999999999999875 55788899999999


Q ss_pred             HhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHH
Q 008022          491 CKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLW  524 (581)
Q Consensus       491 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~  524 (581)
                      ...|++++|++.|+++.+   +.| +...+..+..
T Consensus        92 ~~~~~~~~A~~~~~~al~---l~P~~~~a~~~l~~  123 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQ---VDPSNEEAREGVRN  123 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH---HCcCCHHHHHHHHH
Confidence            999999999999999988   567 4555555543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.98  E-value=5.8e-08  Score=82.23  Aligned_cols=125  Identities=13%  Similarity=-0.040  Sum_probs=79.5

Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh
Q 008022          378 FNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR  457 (581)
Q Consensus       378 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  457 (581)
                      +..+...+...|++++|...|++..    .|+...+..+...+...|++++|++.++...+.. +.+...+..+..++..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            3445555666677777777766653    3455666666666777777777777777666653 4455666666666677


Q ss_pred             cCCHHHHHHHHHHHHHCCCCcCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          458 AGMVVEAFQLLGKMLIEGTKLDA----------------ITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       458 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      .|++++|.+.++++.... +.+.                ..+..++.+|...|++++|.+.++++.+
T Consensus        84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            777777777777766653 1122                5566666666667777777777766666

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.97  E-value=4.6e-09  Score=94.63  Aligned_cols=224  Identities=11%  Similarity=0.005  Sum_probs=156.8

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHH
Q 008022          318 AGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ-NNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMK  396 (581)
Q Consensus       318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  396 (581)
                      .|++++|.+++++..+...  .         .+.. .++++.|...|.+.               ...|...|++++|..
T Consensus         4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            4667788888877765411  1         1222 56777777777664               456778899999999


Q ss_pred             HHHHHhhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCcc-cHHHHHHHHHHHHhcCCHHHHHH
Q 008022          397 LLDQMKQY----ECLP-NITTYNELLDGLLRVNRVKEAFELVTEIEKC----GIQL-NIVTYNTILHGVCRAGMVVEAFQ  466 (581)
Q Consensus       397 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~  466 (581)
                      .|.+..+.    +-.+ -..+|+.+...|...|++++|+..+++..+.    |-+. ...++..+...|.. |++++|++
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            99887542    2111 1347888889999999999999999987653    2111 24577788888888 99999999


Q ss_pred             HHHHHHHCCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHhHHHHHHHHHccCCHHHHHH
Q 008022          467 LLGKMLIEGTKL-----DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD----IISYTSLLWGICNSGGMQEAFI  537 (581)
Q Consensus       467 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~  537 (581)
                      .+++.+......     ...++..++.+|...|++++|++.++++.+...-.++    ...+..++.++...|++++|+.
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999862111     1467889999999999999999999998762211111    2366777788888999999999


Q ss_pred             HHHHHHHcCCCCCH------HhHHHHHHHHHhccCCCChHH
Q 008022          538 YLQKMLNEGICPNF------ATWNVLVRSLFSNLGHLGPVY  572 (581)
Q Consensus       538 ~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~  572 (581)
                      .|++.+ .  .|+.      .....++.++ ..|+.+.+.+
T Consensus       217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            999999 4  3432      1233444444 4466544433

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.95  E-value=6.6e-08  Score=86.46  Aligned_cols=164  Identities=10%  Similarity=-0.041  Sum_probs=114.5

Q ss_pred             HHHHhhcCCChHHHHHHHHHHhhCCC-CCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc-cc----HHHHHH
Q 008022          381 FIKGLCGCGRVDWAMKLLDQMKQYEC-LPNI----TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQ-LN----IVTYNT  450 (581)
Q Consensus       381 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~  450 (581)
                      .+..+...|++++|...++...+... .|+.    ..+..+...+...+++++|+..++++.+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            35667778888888888888765321 1221    12234555666677888898888888763222 22    236788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC-----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCC-CHHhHH
Q 008022          451 ILHGVCRAGMVVEAFQLLGKMLIE-----GTKL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG---EWNP-DIISYT  520 (581)
Q Consensus       451 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~~~~~  520 (581)
                      +...|...|++++|..+++++++.     +..+ ...++..++.+|.+.|++++|++.++++.+..   +..+ -..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            888888999999999999888842     1112 23467888899999999999999998876511   1112 256788


Q ss_pred             HHHHHHHccC-CHHHHHHHHHHHHH
Q 008022          521 SLLWGICNSG-GMQEAFIYLQKMLN  544 (581)
Q Consensus       521 ~l~~~~~~~g-~~~~A~~~~~~~~~  544 (581)
                      .++.+|...| .+++|.+.+++++.
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            8999999999 46999999988854

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.94  E-value=5.8e-09  Score=82.07  Aligned_cols=98  Identities=11%  Similarity=-0.030  Sum_probs=72.9

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022          444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSL  522 (581)
Q Consensus       444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l  522 (581)
                      +...+..+...+...|++++|...|++++... +.+...|..++.+|...|++++|++.|+++..   +.| ++..+..+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~l   95 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV---MDIXEPRFPFHA   95 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHHH
Confidence            44556666777777888888888888877764 44677777778888888888888888888777   445 55677777


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHc
Q 008022          523 LWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      +.+|...|++++|+..|+++++.
T Consensus        96 g~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           96 AECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888888888888888887663

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.91  E-value=1.6e-07  Score=83.91  Aligned_cols=168  Identities=9%  Similarity=-0.075  Sum_probs=116.6

Q ss_pred             hHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---ccc--HH
Q 008022          377 TFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI-----TTYNELLDGLLRVNRVKEAFELVTEIEKCGI---QLN--IV  446 (581)
Q Consensus       377 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~  446 (581)
                      .+...+..+...|++++|.+.++...+.......     ..+..+...+...|++++|+..+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            3444566677778888888888776654321110     1233455566777889999998888775321   111  44


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC---C-CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCC-CH
Q 008022          447 TYNTILHGVCRAGMVVEAFQLLGKMLIE---G-TKL--DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG---EWNP-DI  516 (581)
Q Consensus       447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~  516 (581)
                      +++.+...|...|++++|...++++...   . ..+  ...++..++.+|...|++++|++.++++.+..   +... -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7888888999999999999999988732   1 111  12578889999999999999999999886521   1111 15


Q ss_pred             HhHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 008022          517 ISYTSLLWGICNSGGMQEA-FIYLQKMLN  544 (581)
Q Consensus       517 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  544 (581)
                      .+|..++.+|...|++++| ...++++..
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            6788899999999999999 777888753

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.90  E-value=1.1e-07  Score=80.46  Aligned_cols=127  Identities=12%  Similarity=-0.092  Sum_probs=81.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 008022          414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ  493 (581)
Q Consensus       414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  493 (581)
                      ..+...+...|++++|...+++..    +|+...+..+...+...|++++|.+.+++.+... +.+...+..++.+|...
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~   84 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT   84 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence            344555666677777777766553    4456666666777777777777777777776654 34566666677777777


Q ss_pred             CCHHHHHHHHHHHhcCCCCC-------------C-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          494 GKVNNAIQLLDRIRGGGEWN-------------P-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       494 g~~~~A~~~~~~~~~~~~~~-------------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      |++++|++.++++.+..+-.             | ....+..++.++...|++++|...|+++++.
T Consensus        85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            77777777777766622211             1 1255666667777777777777777777653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.90  E-value=5.9e-08  Score=78.35  Aligned_cols=128  Identities=10%  Similarity=0.014  Sum_probs=95.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022          411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY  490 (581)
Q Consensus       411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  490 (581)
                      ..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++.+... +.+...+..++.++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            345666777778888888888888887763 4467777788888888888888888888888764 44677788888888


Q ss_pred             HhcCCHHHHHHHHHHHhcCCCCCC-CHHhHH--HHHHHHHccCCHHHHHHHHHHHH
Q 008022          491 CKQGKVNNAIQLLDRIRGGGEWNP-DIISYT--SLLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       491 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                      ...|++++|.+.++++.+   ..| +...+.  ..+..+...|++++|+..+++..
T Consensus        92 ~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           92 MALGKFRAALRDYETVVK---VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            888888888888888887   334 444443  33334677788888888887764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.90  E-value=6.8e-07  Score=79.81  Aligned_cols=163  Identities=8%  Similarity=-0.017  Sum_probs=120.3

Q ss_pred             HHHHHHccCChhHHHHHHHHHhhCCC-CCCh----hhHHHHHHHhhcCCChHHHHHHHHHHhhCCCC-CC----hhhHHH
Q 008022          346 MVKVLCQNNMFHQAHSLIEKMAFENC-PPNT----VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECL-PN----ITTYNE  415 (581)
Q Consensus       346 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~  415 (581)
                      .+..+...|++++|..++++...... .++.    ..+..+...+...+++++|...++...+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            35667788888888888888776421 1121    12334667777888999999999998764322 22    225888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc-----CCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHH
Q 008022          416 LLDGLLRVNRVKEAFELVTEIEKC-----GIQL-NIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----GTKLD-AITFN  484 (581)
Q Consensus       416 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~  484 (581)
                      +...|...|++++|...++++.+.     +..+ ...++..+...|.+.|++++|.+.+++.+..    +..+. ..++.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            889999999999999999988741     1122 2347788899999999999999999998854    21122 66889


Q ss_pred             HHHHHHHhcC-CHHHHHHHHHHHhc
Q 008022          485 IIIYAYCKQG-KVNNAIQLLDRIRG  508 (581)
Q Consensus       485 ~l~~~~~~~g-~~~~A~~~~~~~~~  508 (581)
                      .++.+|...| ++++|.+.++++..
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            9999999999 46999999998865

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.88  E-value=3e-07  Score=81.91  Aligned_cols=234  Identities=9%  Similarity=-0.041  Sum_probs=164.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcC-C-C
Q 008022          314 GFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNN-MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGC-G-R  390 (581)
Q Consensus       314 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~  390 (581)
                      ...+.+..++|+++++.++..++. +..+|+.--.++...+ .+++++.+++.+.... |.+..+|+.-..++... + +
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence            334455567899999999887543 5556666666666677 5899999999998875 66777887766666665 6 7


Q ss_pred             hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC--
Q 008022          391 VDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVK--------EAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM--  460 (581)
Q Consensus       391 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--  460 (581)
                      +++++++++.+.+.. +.+...|+.-...+...|.++        ++++.++++.+.. +-|...|+.....+.+.++  
T Consensus       141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~  218 (349)
T 3q7a_A          141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAE  218 (349)
T ss_dssp             CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCC
T ss_pred             hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccc
Confidence            889999999988766 446777776666666666665        8888888888875 5577888887777777775  


Q ss_pred             -----HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhcCC----C
Q 008022          461 -----VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKV--------------------NNAIQLLDRIRGGG----E  511 (581)
Q Consensus       461 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~----~  511 (581)
                           ++++++.+++++... +-|...|+.+...+.+.|..                    .+..++...+....    .
T Consensus       219 ~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (349)
T 3q7a_A          219 TSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDT  297 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSC
T ss_pred             cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccccc
Confidence                 688888888888865 55777888777777776654                    23333333333311    0


Q ss_pred             CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 008022          512 WNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFAT  553 (581)
Q Consensus       512 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  553 (581)
                      -.+++..+..++..|...|+.++|.++++.+.+. ..|-..-
T Consensus       298 ~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~  338 (349)
T 3q7a_A          298 PLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAG  338 (349)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHH
T ss_pred             CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHH
Confidence            1246777888888888889999999999998764 5554433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.88  E-value=4.2e-08  Score=76.85  Aligned_cols=104  Identities=11%  Similarity=-0.071  Sum_probs=86.9

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022          409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIY  488 (581)
Q Consensus       409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  488 (581)
                      +...+..+...+...|++++|...|+.+.+.. |.+...|..+..++...|++++|+..|++++... +.++..+..++.
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~  112 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence            34467777888888999999999999988874 5578888889999999999999999999998875 456788889999


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCCCHH
Q 008022          489 AYCKQGKVNNAIQLLDRIRGGGEWNPDII  517 (581)
Q Consensus       489 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~  517 (581)
                      +|...|++++|+..|+++.+   +.|+..
T Consensus       113 ~~~~lg~~~eA~~~~~~al~---l~~~~~  138 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQ---HSNDEK  138 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---HCCCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH---hCCCHH
Confidence            99999999999999999988   456654

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.88  E-value=2.7e-08  Score=81.39  Aligned_cols=117  Identities=9%  Similarity=0.076  Sum_probs=52.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCCH--HHH
Q 008022          423 VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA-YCKQGKV--NNA  499 (581)
Q Consensus       423 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A  499 (581)
                      .|++++|...++...+.. +.+...+..+...+...|++++|...++++.... +.+...+..++.+ +...|++  ++|
T Consensus        23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            344444444444444432 2334444444444445555555555555544432 2234444444444 4444554  555


Q ss_pred             HHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          500 IQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       500 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      +..++++.+   ..| +...+..++.++...|++++|...++++++
T Consensus       101 ~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A          101 RAMIDKALA---LDSNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            555555444   223 334444445555555555555555555544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.86  E-value=2.3e-08  Score=78.63  Aligned_cols=109  Identities=6%  Similarity=-0.069  Sum_probs=90.1

Q ss_pred             HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008022          397 LLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT  476 (581)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  476 (581)
                      .|+.+.... +.+...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|++.+++++... 
T Consensus         9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-   85 (148)
T 2vgx_A            9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-   85 (148)
T ss_dssp             SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence            345555443 2345567778888899999999999999998864 5578888889999999999999999999999875 


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          477 KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       477 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +.+...+..++.+|...|++++|++.|+++.+
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45778889999999999999999999999987

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.85  E-value=4.5e-08  Score=74.61  Aligned_cols=105  Identities=8%  Similarity=0.035  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC--------HH
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD--------II  517 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~--------~~  517 (581)
                      ..+..+...+.+.|++++|++.|+++++.. +.+..+|..++.+|...|++++|++.++++.+   +.|+        ..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVE---VGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH---hCcccchhhHHHHH
Confidence            456667778888888888888888888764 44677788888888888888888888888776   2232        23


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 008022          518 SYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNV  556 (581)
Q Consensus       518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  556 (581)
                      +|..++.++...|++++|++.|++.+.  ..|++.....
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~  121 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKK  121 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHH
Confidence            567778888888888888888888876  3567665543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.85  E-value=6.4e-08  Score=83.16  Aligned_cols=134  Identities=9%  Similarity=-0.126  Sum_probs=99.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHH
Q 008022          414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD--AITFNIIIYAYC  491 (581)
Q Consensus       414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~  491 (581)
                      ..+...+...|++++|.++|..+...+  |+......+...+.+.+++++|+..|+...... .|.  ...+..++.++.
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~  182 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA  182 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence            345667788899999999998887653  433355556667888999999999998665432 121  346788889999


Q ss_pred             hcCCHHHHHHHHHHHhcCCCCCCC--HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 008022          492 KQGKVNNAIQLLDRIRGGGEWNPD--IISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFAT  553 (581)
Q Consensus       492 ~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  553 (581)
                      ..|++++|+..|++... .+..|.  ...+...+.++.+.|+.++|...|+++...  .|+...
T Consensus       183 ~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~  243 (282)
T 4f3v_A          183 NLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKV  243 (282)
T ss_dssp             HTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred             HCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHH
Confidence            99999999999999885 333253  346777888899999999999999999874  566333

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.85  E-value=1.1e-07  Score=73.04  Aligned_cols=119  Identities=18%  Similarity=0.100  Sum_probs=82.6

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022          444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSL  522 (581)
Q Consensus       444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l  522 (581)
                      +...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|++.++++..   ..| +...+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~   86 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAIC---IDPAYSKAYGRM   86 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh---cCccCHHHHHHH
Confidence            44556666777777777888887777777653 34566777777777778888888888877776   234 46677777


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCC
Q 008022          523 LWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGH  567 (581)
Q Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  567 (581)
                      +.++...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            777888888888888888777642 22455566666666666654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.85  E-value=7.6e-08  Score=77.67  Aligned_cols=129  Identities=10%  Similarity=-0.025  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      ...+..+...+...|++++|...+++.+... +.+..++..++.++...|++++|++.++++.+   ..| +...+..++
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~a   88 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence            3456777888899999999999999999875 45788899999999999999999999999988   345 677899999


Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCHHhHH--HHHHHHHhccCCCChHHHHHHHh
Q 008022          524 WGICNSGGMQEAFIYLQKMLNEGICPNFATWN--VLVRSLFSNLGHLGPVYILDDIM  578 (581)
Q Consensus       524 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~  578 (581)
                      .++...|++++|...++++++.. +.+...+.  ..+..+...|++++|++.+++..
T Consensus        89 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           89 ASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            99999999999999999998752 23444443  33334777899999998887653

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.85  E-value=4.2e-08  Score=80.23  Aligned_cols=124  Identities=6%  Similarity=0.030  Sum_probs=104.1

Q ss_pred             HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCc-
Q 008022            4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDA-LLAENRF-   81 (581)
Q Consensus         4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-   81 (581)
                      .+...|++++|...++..++..+. +..++..++..|...|++++|...|+++....+ .++..+..+..+ +...|++ 
T Consensus        19 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           19 QFASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             CCC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcc
Confidence            356789999999999999987654 889999999999999999999999999997664 567788888888 7789998 


Q ss_pred             -chHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 008022           82 -SMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKG  130 (581)
Q Consensus        82 -~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  130 (581)
                       ++|...++.+.+.. +.+...+..+...+...|++++|...++...+..
T Consensus        97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence             99999999998875 5567888889999999999999999999998873

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.84  E-value=9e-08  Score=73.03  Aligned_cols=97  Identities=12%  Similarity=-0.036  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      ...+......+.+.|++++|...|++.+... +.+...+..++.+|...|++++|+..++++.+   +.| +...|..++
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg   79 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIE---KDPNFVRAYIRKA   79 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHH
Confidence            3456666777778888888888888887764 44677788888888888888888888888877   445 566777888


Q ss_pred             HHHHccCCHHHHHHHHHHHHHc
Q 008022          524 WGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       524 ~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      .++...|++++|...|+++++.
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHh
Confidence            8888888888888888888763

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.84  E-value=5e-06  Score=74.09  Aligned_cols=237  Identities=8%  Similarity=0.035  Sum_probs=159.4

Q ss_pred             HHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-C-Ch
Q 008022          280 LCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAG-NLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQN-N-MF  356 (581)
Q Consensus       280 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~  356 (581)
                      ....+..++|++++..+...+ |.+...|+.-...+...+ .+++++..++.+....+. +..+|+.-..++... + ++
T Consensus        64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred             HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence            334445567888888888764 446677777777777777 588888888888877543 666666666555555 5 78


Q ss_pred             hHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChH--------HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---
Q 008022          357 HQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVD--------WAMKLLDQMKQYECLPNITTYNELLDGLLRVNR---  425 (581)
Q Consensus       357 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  425 (581)
                      ++++.+++++.... +.+..+|+....+....+.++        ++++.++++.+.+ +-|...|+.....+.+.++   
T Consensus       142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~  219 (349)
T 3q7a_A          142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET  219 (349)
T ss_dssp             HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence            88888888888765 667777776665555555555        7888888887765 3467778777777777665   


Q ss_pred             ----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----C
Q 008022          426 ----VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV--------------------VEAFQLLGKMLIEG-----T  476 (581)
Q Consensus       426 ----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~-----~  476 (581)
                          ++++++.+++++... +-|...|+.+-..+.+.|+.                    ....+....+....     .
T Consensus       220 ~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (349)
T 3q7a_A          220 SSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP  298 (349)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred             chHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence                678888888887764 55777777766666666653                    33333333333321     0


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          477 KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       477 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      .+++..+..++..|...|+.++|.++++.+.++  ..| ...-|+..+
T Consensus       299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~--~dpir~~yw~~~~  344 (349)
T 3q7a_A          299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE--YDQMRAGYWEFRR  344 (349)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCGGGHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--hChHHHHHHHHHH
Confidence            356777888888888888888899998888752  345 333444433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.84  E-value=6.5e-08  Score=81.16  Aligned_cols=158  Identities=10%  Similarity=-0.108  Sum_probs=105.6

Q ss_pred             hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-cccHHHHHHHHHHHHhcCC
Q 008022          386 CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC----GI-QLNIVTYNTILHGVCRAGM  460 (581)
Q Consensus       386 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~  460 (581)
                      ...|++++|.+.++.+.. ........+..+...+...|++++|...+++..+.    +. +....++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            346777777775544433 21234456777777788888888888888876652    11 2234567777788888889


Q ss_pred             HHHHHHHHHHHHHC----CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHhHHHHHHHHHccC
Q 008022          461 VVEAFQLLGKMLIE----GTKL--DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD----IISYTSLLWGICNSG  530 (581)
Q Consensus       461 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g  530 (581)
                      +++|.+.+++....    +..+  ...++..++..+...|++++|...+++........++    ..++..++.++...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            88888888887754    1111  2345777888888899999999888887641111112    234677888888999


Q ss_pred             CHHHHHHHHHHHHH
Q 008022          531 GMQEAFIYLQKMLN  544 (581)
Q Consensus       531 ~~~~A~~~~~~~~~  544 (581)
                      ++++|...++++.+
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999888865

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.83  E-value=9.7e-08  Score=73.65  Aligned_cols=117  Identities=14%  Similarity=0.038  Sum_probs=74.6

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHH
Q 008022          443 LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTS  521 (581)
Q Consensus       443 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~  521 (581)
                      .+...+..+...+...|++++|...++++.... +.+..++..++.++...|++++|++.++++.+   ..| +...+..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~   89 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQ---LEPTFIKGYTR   89 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCchHHHHH
Confidence            345566666666777777777777777776653 33566667777777777777777777777766   234 4566677


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcc
Q 008022          522 LLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSLFSNL  565 (581)
Q Consensus       522 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g  565 (581)
                      ++.++...|++++|...++++.+.  .|+ ...+..+..++...|
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence            777777777777777777777653  232 344445555554433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.81  E-value=2e-07  Score=70.80  Aligned_cols=113  Identities=21%  Similarity=0.191  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      ...+..+...+...|++++|.+.++++.... +.+..++..++.++...|++++|+..++++..   ..| +..++..++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~la   84 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE---LDPNNAEAWYNLG   84 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHH
Confidence            3455566666666777777777777766653 33556666667777777777777777777665   223 455666677


Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008022          524 WGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLF  562 (581)
Q Consensus       524 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  562 (581)
                      ..+...|++++|...++++.+.. +.+...+..+...+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           85 NAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            77777777777777777776531 223344444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.80  E-value=5.9e-08  Score=75.84  Aligned_cols=96  Identities=11%  Similarity=-0.079  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      ...+..+...+.+.|++++|...|++++..+ +.+...|..++.+|...|++++|+..++++..   +.| ++..+..++
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg   93 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGAL---MDINEPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCcHHHHHHH
Confidence            3444555666667777777777777776654 34666677777777777777777777777766   334 455666677


Q ss_pred             HHHHccCCHHHHHHHHHHHHH
Q 008022          524 WGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       524 ~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      .+|...|++++|...|+++++
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            777777777777777777765

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.80  E-value=2.6e-07  Score=70.18  Aligned_cols=114  Identities=18%  Similarity=0.156  Sum_probs=82.6

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008022          410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA  489 (581)
Q Consensus       410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  489 (581)
                      ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.... +.+..++..++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence            4456667777777888888888888877653 4456677777788888888888888888887764 4466777788888


Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHc
Q 008022          490 YCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICN  528 (581)
Q Consensus       490 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~  528 (581)
                      +...|++++|...++++.+   ..| +...+..+...+..
T Consensus        87 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALE---LDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHh
Confidence            8888888888888888876   334 45555555555543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.80  E-value=1.3e-07  Score=72.82  Aligned_cols=117  Identities=7%  Similarity=-0.109  Sum_probs=79.2

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022          409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIY  488 (581)
Q Consensus       409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  488 (581)
                      +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            34456666667777777777777777776653 3456667777777777777777777777777654 345667777777


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccC
Q 008022          489 AYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSG  530 (581)
Q Consensus       489 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g  530 (581)
                      ++...|++++|++.++++.+   ..| +...+..+..++...|
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALD---LDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---HCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhc
Confidence            77777888888888777776   344 3445556666655544

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.80  E-value=7.2e-08  Score=87.78  Aligned_cols=150  Identities=11%  Similarity=-0.040  Sum_probs=110.3

Q ss_pred             CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc---------------HHHHHHHHH
Q 008022          389 GRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN---------------IVTYNTILH  453 (581)
Q Consensus       389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~  453 (581)
                      +++++|...++...+.. +.+...+..+...+...|++++|+..|++..+.. +.+               ...+..+..
T Consensus       127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34444554444333221 1245577778888888899999999998888763 222               477888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCH
Q 008022          454 GVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGM  532 (581)
Q Consensus       454 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~  532 (581)
                      ++.+.|++++|+..+++++... +.+...+..++.+|...|++++|+..|+++.+   +.| +..++..+..++...|++
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888875 45777888888888888888888888888887   456 566788888888888888


Q ss_pred             HHH-HHHHHHHHH
Q 008022          533 QEA-FIYLQKMLN  544 (581)
Q Consensus       533 ~~A-~~~~~~~~~  544 (581)
                      ++| ...|++|..
T Consensus       281 ~~a~~~~~~~~~~  293 (336)
T 1p5q_A          281 LAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            887 456777654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.78  E-value=1.2e-07  Score=72.77  Aligned_cols=119  Identities=10%  Similarity=0.037  Sum_probs=87.2

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022          409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIY  488 (581)
Q Consensus       409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  488 (581)
                      +...+..+...+...|++++|...++...... +.+...+..+...+...|++++|.+.+++..... +.+...+..++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            34456666777777888888888888877653 4466777777778888888888888888887764 445677788888


Q ss_pred             HHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCH
Q 008022          489 AYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGM  532 (581)
Q Consensus       489 ~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~  532 (581)
                      ++...|++++|.+.++++.+   ..| +...+..+..++...|++
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALE---LDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCHHHHHHHHHHHHh---cCccchHHHHHHHHHHHHHhcC
Confidence            88888888888888888877   345 556677777777666653

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.78  E-value=1.8e-06  Score=76.62  Aligned_cols=227  Identities=10%  Similarity=0.077  Sum_probs=142.4

Q ss_pred             HhcCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC----------hhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 008022          316 AKAGNLL-GASQIWNRMISNGCSPNVVAYTCMVKVLCQNNM----------FHQAHSLIEKMAFENCPPNTVTFNTFIKG  384 (581)
Q Consensus       316 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  384 (581)
                      .+.|.++ +|+.+++.+...++. +..+|+.--.++...+.          +++++.+++.+.... |.+..+|+.-..+
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl  117 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL  117 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3455544 788888888876432 33344433333322222          567777777777664 5677777766666


Q ss_pred             hhcCC--ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc---
Q 008022          385 LCGCG--RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNR-VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA---  458 (581)
Q Consensus       385 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  458 (581)
                      +...+  ++++++.+++.+.+.. +-+...|+.-...+...|. ++++++.+..+++.. +-|...|+.....+...   
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred             HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence            66666  4778888888887765 3466677766666667776 478888888877764 55667776666655554   


Q ss_pred             -----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhcCCCCCCCH
Q 008022          459 -----------GMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ-----------GKVNNAIQLLDRIRGGGEWNPDI  516 (581)
Q Consensus       459 -----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~p~~  516 (581)
                                 +.++++++.+.+.+... +-|...|+.+-..+.+.           +.++++++.++++.+   ..|+.
T Consensus       196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle---~~pd~  271 (331)
T 3dss_A          196 PDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE---LEPEN  271 (331)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH---HCTTC
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh---hCccc
Confidence                       34677777777777764 44666666555555554           346777777777777   55654


Q ss_pred             HhHHHHHHHH-----HccCCHHHHHHHHHHHHHcCCCCCHHh
Q 008022          517 ISYTSLLWGI-----CNSGGMQEAFIYLQKMLNEGICPNFAT  553 (581)
Q Consensus       517 ~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~  553 (581)
                       .|..+..++     -..|..+++...+.++++  +.|-..-
T Consensus       272 -~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~  310 (331)
T 3dss_A          272 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA  310 (331)
T ss_dssp             -HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred             -chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence             333222222     235666777777777776  4565443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.78  E-value=1.5e-07  Score=80.83  Aligned_cols=194  Identities=11%  Similarity=-0.057  Sum_probs=128.7

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHccCChhHHHHHHHHHhhCCCCCC---------------
Q 008022          317 KAGNLLGASQIWNRMISNGCSPNVVAYTCM-------VKVLCQNNMFHQAHSLIEKMAFENCPPN---------------  374 (581)
Q Consensus       317 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------  374 (581)
                      ..++...|.+.|.++....+. ....|..+       ...+...++..+++..+......  .|+               
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence            456677777777777665322 34445444       23333334444444444443331  111               


Q ss_pred             -------hhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc--H
Q 008022          375 -------TVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN--I  445 (581)
Q Consensus       375 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~  445 (581)
                             ....-.+..++...|++++|.+.|..+...+  |+......+...+.+.+++++|+..|+...... .|.  .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                   1223345677788899999999998887654  444355555667888999999999998665431 121  2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhH
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL--DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISY  519 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~  519 (581)
                      ..+..+..++...|++++|+..|++.......|  ........+.++.+.|+.++|...|+++..   ..|+...+
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a---~~P~~~~~  244 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT---THPEPKVA  244 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSCCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHH
Confidence            366778888999999999999999998543224  345677888899999999999999999988   45663333

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.78  E-value=1.7e-07  Score=85.32  Aligned_cols=133  Identities=8%  Similarity=-0.076  Sum_probs=88.0

Q ss_pred             ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008022          374 NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPN--------------ITTYNELLDGLLRVNRVKEAFELVTEIEKC  439 (581)
Q Consensus       374 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  439 (581)
                      +...+..+...+...|++++|...|++..+......              ...|..+..++.+.|++++|+..++.+++.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455666667777777777777777777766542111              356666777777777777777777777765


Q ss_pred             CCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH-HHHHHHHhc
Q 008022          440 GIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNA-IQLLDRIRG  508 (581)
Q Consensus       440 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  508 (581)
                      . +.+...+..+..++...|++++|+..|++++... +.+..++..+..++...|++++| ...++++..
T Consensus       226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 4456667777777777777777777777777654 34566677777777777777766 345555543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.77  E-value=9.3e-08  Score=80.20  Aligned_cols=158  Identities=9%  Similarity=-0.121  Sum_probs=117.8

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHhcCC
Q 008022          421 LRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE----GT-KLDAITFNIIIYAYCKQGK  495 (581)
Q Consensus       421 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~  495 (581)
                      ...|++++|.+.++.+... .......+..+...+...|++++|...+++.+..    +. +....++..++..|...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            4579999999966655432 2345678888999999999999999999998863    11 2245578889999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCC-C----HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcc
Q 008022          496 VNNAIQLLDRIRGGGEWNP-D----IISYTSLLWGICNSGGMQEAFIYLQKMLNEGI-CPN----FATWNVLVRSLFSNL  565 (581)
Q Consensus       496 ~~~A~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g  565 (581)
                      +++|.+.+++..+.....+ +    ..++..++..+...|++++|...+++..+..- .++    ...+..+..++...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            9999999999876311122 2    34678899999999999999999999864311 112    233567888899999


Q ss_pred             CCCChHHHHHHHhh
Q 008022          566 GHLGPVYILDDIMA  579 (581)
Q Consensus       566 ~~~~a~~~~~~~~~  579 (581)
                      ++++|.+.+++.++
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.75  E-value=5.1e-08  Score=86.31  Aligned_cols=192  Identities=7%  Similarity=-0.043  Sum_probs=96.4

Q ss_pred             hhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 008022          340 VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDG  419 (581)
Q Consensus       340 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  419 (581)
                      ...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...++...+.. +.+...+..+..+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   81 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3444555555666666666666666665543 3455566666666666666666666666666543 2344556666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCcccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022          420 LLRVNRVKEAFELVTEIEKCGIQLNI-VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN  498 (581)
Q Consensus       420 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  498 (581)
                      +...|++++|...|+...+..  |+. ..+...+....+.   .++... ........+.+......+...+  .|++++
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l~--~~~~~~  153 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRLI--AAERER  153 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence            666667777766666665431  110 0011111111111   111111 1122222333444444343322  467777


Q ss_pred             HHHHHHHHhcCCCCCCCHH-hHHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 008022          499 AIQLLDRIRGGGEWNPDII-SYTSLLWGICNS-GGMQEAFIYLQKMLN  544 (581)
Q Consensus       499 A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~-g~~~~A~~~~~~~~~  544 (581)
                      |++.++++.+   ..|+.. ....+...+... +.+++|.++|.++.+
T Consensus       154 A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          154 ELEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            7777776666   345432 223333333333 556677777766643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.75  E-value=4.3e-08  Score=86.77  Aligned_cols=99  Identities=11%  Similarity=-0.141  Sum_probs=79.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022           29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK  108 (581)
Q Consensus        29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (581)
                      +...+..++..+...|++++|+..|+.+....+ .+...|..+..++.+.|++++|...++++.+.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            556777888888888888888888888887554 467788888888888888888888888888765 556677888888


Q ss_pred             HHHhcCChhHHHHHHHHHhhC
Q 008022          109 ALCKNNRVDGAYKLLVEMGNK  129 (581)
Q Consensus       109 ~~~~~~~~~~a~~~~~~~~~~  129 (581)
                      ++...|++++|...|+...+.
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            888888888888888877664

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.72  E-value=1.3e-07  Score=73.84  Aligned_cols=98  Identities=8%  Similarity=-0.045  Sum_probs=83.9

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 008022          409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIY  488 (581)
Q Consensus       409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  488 (581)
                      +...+..+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...+++++... +.+...+..++.
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~   94 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence            34456667778889999999999999988864 5578888889999999999999999999999875 457778889999


Q ss_pred             HHHhcCCHHHHHHHHHHHhc
Q 008022          489 AYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       489 ~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +|...|++++|++.|+++.+
T Consensus        95 ~~~~~g~~~~A~~~~~~al~  114 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARA  114 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999887

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.70  E-value=2.8e-08  Score=83.01  Aligned_cols=126  Identities=14%  Similarity=0.024  Sum_probs=69.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008022          412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN----------------IVTYNTILHGVCRAGMVVEAFQLLGKMLIEG  475 (581)
Q Consensus       412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  475 (581)
                      .+..+...+...|++++|+..|++..+.. +.+                ...+..+..++...|++++|+..+++++...
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            34445555555666666666666655431 111                1455566666666777777777777666653


Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHH-HHHHHH
Q 008022          476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAF-IYLQKM  542 (581)
Q Consensus       476 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~  542 (581)
                       +.+...+..++.+|...|++++|++.|+++.+   +.| +...+..+..++...++.+++. ..+..+
T Consensus       119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAAS---LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred             -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             34556666666677777777777777776665   334 4455556665555555555544 334444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.69  E-value=7.6e-07  Score=66.72  Aligned_cols=95  Identities=14%  Similarity=0.050  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHH
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLW  524 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~  524 (581)
                      ..+..+...+...|++++|...+++..... +.+...+..++.++...|++++|...++++.+   ..| +...+..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~a~   80 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD---LKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH---hCcccHHHHHHHHH
Confidence            445555666666777777777777766653 33566666667777777777777777777666   234 4556666777


Q ss_pred             HHHccCCHHHHHHHHHHHHH
Q 008022          525 GICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       525 ~~~~~g~~~~A~~~~~~~~~  544 (581)
                      ++...|++++|...++++.+
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHH
Confidence            77777777777777777765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.68  E-value=5.8e-07  Score=68.45  Aligned_cols=97  Identities=13%  Similarity=-0.009  Sum_probs=81.1

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008022          410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA  489 (581)
Q Consensus       410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  489 (581)
                      ...+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..+++.+... +.+...+..++.+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            3456677778888899999999999888764 5567888888888999999999999999998875 4467788889999


Q ss_pred             HHhcCCHHHHHHHHHHHhc
Q 008022          490 YCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       490 ~~~~g~~~~A~~~~~~~~~  508 (581)
                      +...|++++|++.++++.+
T Consensus        82 ~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           82 QIAVKEYASALETLDAART  100 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHH
Confidence            9999999999999998887

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.68  E-value=4.6e-07  Score=68.93  Aligned_cols=108  Identities=18%  Similarity=0.098  Sum_probs=80.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcC----HHHHH
Q 008022          411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT--KLD----AITFN  484 (581)
Q Consensus       411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~  484 (581)
                      ..+..+...+.+.|++++|++.|++.++.. |.+...|..+..+|...|++++|++.+++.++...  .++    ..++.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            356667778888888888888888888764 55677788888888888888888888888876421  111    23677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHH
Q 008022          485 IIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSL  522 (581)
Q Consensus       485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l  522 (581)
                      .++.++...|++++|++.|++...   ..|++.....+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~---~~~~~~~~~~l  122 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS---EFRDPELVKKV  122 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH---HSCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh---hCcCHHHHHHH
Confidence            788888888999999999988877   45676554433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.68  E-value=4.1e-08  Score=81.94  Aligned_cols=153  Identities=11%  Similarity=-0.049  Sum_probs=106.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---------------HHHH
Q 008022          419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD---------------AITF  483 (581)
Q Consensus       419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~  483 (581)
                      .....|+++++.+.|+.-... .......+..+...+...|++++|...|++.+.......               ..++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (198)
T 2fbn_A           13 GRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN   91 (198)
T ss_dssp             ---------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence            334456666666666533221 122345677788889999999999999999998632211               2788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHH
Q 008022          484 NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICP-NFATWNVLVRSL  561 (581)
Q Consensus       484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~  561 (581)
                      ..++.+|...|++++|+..++++.+   +.| +...+..++.+|...|++++|+..|+++++.  .| +...+..+..++
T Consensus        92 ~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~  166 (198)
T 2fbn_A           92 LNLATCYNKNKDYPKAIDHASKVLK---IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCV  166 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHH
Confidence            8999999999999999999999998   456 6778999999999999999999999999874  45 456677777777


Q ss_pred             HhccCCCChH-HHHHHH
Q 008022          562 FSNLGHLGPV-YILDDI  577 (581)
Q Consensus       562 ~~~g~~~~a~-~~~~~~  577 (581)
                      ...++..++. ..+..+
T Consensus       167 ~~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          167 NKLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            7777666665 334433

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.68  E-value=1.3e-06  Score=65.39  Aligned_cols=109  Identities=14%  Similarity=0.020  Sum_probs=84.9

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008022          410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA  489 (581)
Q Consensus       410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  489 (581)
                      ...+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..... +.+...+..++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            4456677778888888999998888888763 4567778888888888899999999998888764 4467788888889


Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          490 YCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       490 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      +...|++++|.+.++++.+   ..| +...+..+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~  113 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLK---HEANNPQLKEGLQ  113 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH---cCCCCHHHHHHHH
Confidence            9999999999999999887   445 444444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.68  E-value=2.5e-07  Score=70.99  Aligned_cols=113  Identities=12%  Similarity=0.065  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CCC----HHhHH
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW-NPD----IISYT  520 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~p~----~~~~~  520 (581)
                      ..+..+...+...|++++|...++++.... +.+...+..++.++...|++++|...++++....+- .++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            445566666777777777777777777654 445666777777777777777777777777652110 011    55677


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 008022          521 SLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSL  561 (581)
Q Consensus       521 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  561 (581)
                      .++.++...|++++|...|+++.+.  .|+......+..+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~  122 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence            7777777778888888888777763  45555544444433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.68  E-value=3.2e-07  Score=73.74  Aligned_cols=96  Identities=8%  Similarity=-0.020  Sum_probs=55.5

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022          411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY  490 (581)
Q Consensus       411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  490 (581)
                      ..+..+...+...|++++|+..|++..+.. +.+...+..+..+|...|++++|+..+++++... +.+...+..++.+|
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            345555555666666666666666655542 3345555555666666666666666666665543 33455555666666


Q ss_pred             HhcCCHHHHHHHHHHHhc
Q 008022          491 CKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       491 ~~~g~~~~A~~~~~~~~~  508 (581)
                      ...|++++|++.|+++.+
T Consensus        90 ~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHH
Confidence            666666666666666555

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.67  E-value=1.9e-05  Score=70.13  Aligned_cols=221  Identities=8%  Similarity=0.019  Sum_probs=118.0

Q ss_pred             hcCChh-hHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 008022          282 SNGSMD-EAVSVSYQMEENSCPPNVTTYSALIDGFAKAGN----------LLGASQIWNRMISNGCSPNVVAYTCMVKVL  350 (581)
Q Consensus       282 ~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  350 (581)
                      +.|.++ +|+.++..+...+ |.+...|+.--..+...+.          +++++.+++.+....+. +..+|+.-..++
T Consensus        41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL  118 (331)
T 3dss_A           41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL  118 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            445444 5667666666653 3344445443333333222          45666666666655332 555555555555


Q ss_pred             HccC--ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCC-hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----
Q 008022          351 CQNN--MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGR-VDWAMKLLDQMKQYECLPNITTYNELLDGLLRV----  423 (581)
Q Consensus       351 ~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  423 (581)
                      ...+  .+++++.+++.+.... +.+...|+.-..+....|. ++++++.++.+.+.+ +.|...|+.....+...    
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred             hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence            5555  3667777777766654 5566666655555555665 466666666666654 33555555555444443    


Q ss_pred             ----------CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCcCHHH
Q 008022          424 ----------NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRA-----------GMVVEAFQLLGKMLIEGTKLDAIT  482 (581)
Q Consensus       424 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~  482 (581)
                                +.++++++.+....... |-|...|+.+-..+.+.           +.++++++.++++.+.. +.+..+
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd~~w~  274 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PENKWC  274 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-cccchH
Confidence                      33566666666666553 44555555444444333           23566666676666643 122222


Q ss_pred             HHHHHHHHH---hcCCHHHHHHHHHHHhc
Q 008022          483 FNIIIYAYC---KQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       483 ~~~l~~~~~---~~g~~~~A~~~~~~~~~  508 (581)
                      +..++....   ..|..++....+.++.+
T Consensus       275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          275 LLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             HHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            222221111   24556666666666666

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.67  E-value=2.2e-07  Score=70.01  Aligned_cols=91  Identities=16%  Similarity=0.075  Sum_probs=58.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHc
Q 008022          450 TILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICN  528 (581)
Q Consensus       450 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~  528 (581)
                      .+...+.+.|++++|...+++++... +.+...+..++.++...|++++|+..++++.+   +.| +...+..++.++..
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence            34455566666666666666666653 33566666666666666677777766666666   345 45566666666666


Q ss_pred             cCCHHHHHHHHHHHHH
Q 008022          529 SGGMQEAFIYLQKMLN  544 (581)
Q Consensus       529 ~g~~~~A~~~~~~~~~  544 (581)
                      .|++++|+..++++++
T Consensus        98 ~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           98 EHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            6667777766666664

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.65  E-value=5.2e-07  Score=69.90  Aligned_cols=98  Identities=14%  Similarity=0.046  Sum_probs=70.7

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHH
Q 008022          443 LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTS  521 (581)
Q Consensus       443 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~  521 (581)
                      .+...+..+...+...|++++|...+++.+... +.+...+..++.++...|++++|+..++++.+   +.| +...+..
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~   82 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF   82 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCchhHHHHHH
Confidence            455666677777777777777777777777664 34566777777777777777777777777776   334 5667777


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHH
Q 008022          522 LLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       522 l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      ++.++...|++++|...|+++++
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHH
Confidence            77777777777777777777765

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.64  E-value=6.2e-07  Score=72.03  Aligned_cols=98  Identities=12%  Similarity=0.034  Sum_probs=70.7

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022          444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSL  522 (581)
Q Consensus       444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l  522 (581)
                      +...+..+...+...|++++|++.|++.+... +.+...+..++.+|...|++++|+..++++.+   +.| +...|..+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l   85 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPKYSKAWSRL   85 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence            44556666777777777777777777777764 34666777777777777777777777777776   345 46677777


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHc
Q 008022          523 LWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      +.+|...|++++|+..|+++++.
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHh
Confidence            77777777777777777777653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.58  E-value=1.1e-06  Score=68.08  Aligned_cols=99  Identities=14%  Similarity=0.009  Sum_probs=80.4

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008022          408 PNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIII  487 (581)
Q Consensus       408 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  487 (581)
                      .+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++++... +.+...+..++
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            456677778888888888888888888887764 4567788888888888888999988888888865 44677888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHhc
Q 008022          488 YAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       488 ~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      .+|...|++++|+..++++.+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            888889999999988888876

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.57  E-value=6.1e-07  Score=66.50  Aligned_cols=97  Identities=13%  Similarity=-0.042  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHH
Q 008022          447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGI  526 (581)
Q Consensus       447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~  526 (581)
                      .+..+...+...|++++|...++++.... +.+...+..++.++...|++++|++.++++.+..+-..+...+..++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            34444455555555555555555555543 23445555555566666666666666666555211100244555556666


Q ss_pred             Hcc-CCHHHHHHHHHHHHH
Q 008022          527 CNS-GGMQEAFIYLQKMLN  544 (581)
Q Consensus       527 ~~~-g~~~~A~~~~~~~~~  544 (581)
                      ... |++++|.+.+++..+
T Consensus        87 ~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             TTCSSCSHHHHHHHHHHGG
T ss_pred             HHHhCCHHHHHHHHHHHhh
Confidence            666 666666666666654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=2.1e-06  Score=67.44  Aligned_cols=97  Identities=11%  Similarity=0.015  Sum_probs=63.3

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHh
Q 008022          444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD----AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIIS  518 (581)
Q Consensus       444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~  518 (581)
                      +...+..+...+...|++++|.+.+++.....  |+    ...+..++.+|...|++++|+..++++.+   ..| +...
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~  101 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE---KDGGDVKA  101 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTSCCHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCccCHHH
Confidence            44555566666666667777777776666542  33    45666666777777777777777777666   234 4556


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          519 YTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      +..++.++...|++++|...|+++++.
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            666777777777777777777777653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.57  E-value=7.8e-07  Score=68.17  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=79.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcC----HHHHH
Q 008022          411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT--KLD----AITFN  484 (581)
Q Consensus       411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~  484 (581)
                      ..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...++++.....  .++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            455666777777888888888888877663 44667777777788888888888888888776531  111    66777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHH
Q 008022          485 IIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWG  525 (581)
Q Consensus       485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~  525 (581)
                      .++.++...|++++|.+.++++.+   ..|+...+..+...
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~  121 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLA---EHRTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHH---hCCCHHHHHHHHHH
Confidence            888888888888888888888877   34565555544443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.54  E-value=1.8e-06  Score=63.86  Aligned_cols=98  Identities=11%  Similarity=-0.098  Sum_probs=73.1

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHH
Q 008022          409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL--DAITFNII  486 (581)
Q Consensus       409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l  486 (581)
                      +...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.+++..... +.  +...+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l   82 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK   82 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence            34456666777777788888888887777653 4456677777777888888888888888887763 33  56777788


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHhc
Q 008022          487 IYAYCKQ-GKVNNAIQLLDRIRG  508 (581)
Q Consensus       487 ~~~~~~~-g~~~~A~~~~~~~~~  508 (581)
                      +.++... |++++|++.++++..
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGG
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhh
Confidence            8888888 888888888888877

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.54  E-value=2.5e-06  Score=65.11  Aligned_cols=91  Identities=15%  Similarity=0.047  Sum_probs=60.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----HHhHHHHH
Q 008022          451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDA---ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD----IISYTSLL  523 (581)
Q Consensus       451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~  523 (581)
                      +...+...|++++|...++++.... +.+.   ..+..++.++...|++++|+..++++...   .|+    ..++..++
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la   83 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHH
Confidence            4455666777777777777777653 2222   46666777777777777777777777662   342    45566777


Q ss_pred             HHHHccCCHHHHHHHHHHHHHc
Q 008022          524 WGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       524 ~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      .++...|++++|...|+++++.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            7777777777777777777663

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.54  E-value=1.3e-06  Score=65.75  Aligned_cols=95  Identities=11%  Similarity=-0.051  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008022          412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYC  491 (581)
Q Consensus       412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  491 (581)
                      .+..+...+.+.|++++|+..++...+.. +.+...+..+..++...|++++|+..+++++... +.+...+..++.+|.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            45566777888899999999999988864 5577888888888999999999999999998875 446778888999999


Q ss_pred             hcCCHHHHHHHHHHHhc
Q 008022          492 KQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       492 ~~g~~~~A~~~~~~~~~  508 (581)
                      ..|++++|+..++++.+
T Consensus        97 ~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           97 NEHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            99999999999999887

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.53  E-value=1.2e-06  Score=70.06  Aligned_cols=100  Identities=12%  Similarity=0.027  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 008022          448 YNTILHGVCRAGMVVEAFQLLGKMLIE--------G---------TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGG  510 (581)
Q Consensus       448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  510 (581)
                      +......+.+.|++++|+..|.+.+..        .         .+.+..++..++.+|.+.|++++|+..++++.+  
T Consensus        14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~--   91 (162)
T 3rkv_A           14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK--   91 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh--
Confidence            334444455555555555555555443        0         022345677778888888888888888888877  


Q ss_pred             CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022          511 EWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA  552 (581)
Q Consensus       511 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  552 (581)
                       +.| +...|..++.+|...|++++|...|+++++.  .|+..
T Consensus        92 -~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~  131 (162)
T 3rkv_A           92 -REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA  131 (162)
T ss_dssp             -HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred             -cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence             445 5667778888888888888888888888773  45533

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=4.6e-06  Score=65.43  Aligned_cols=109  Identities=14%  Similarity=0.035  Sum_probs=77.2

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 008022          409 NITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN----IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFN  484 (581)
Q Consensus       409 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  484 (581)
                      +...+..+...+...|++++|...|++..+.  .|+    ...+..+..++...|++++|...+++..... +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            4456666677777777888888887777764  333    5667777777888888888888888877764 34667777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          485 IIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       485 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      .++.+|...|++++|.+.++++.+   +.| +...+..+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~  140 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVS---LEPKNKVFQEALR  140 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH---HCSSCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHH
Confidence            888888888888888888888877   345 344444333

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.47  E-value=4.3e-06  Score=79.56  Aligned_cols=197  Identities=7%  Similarity=-0.059  Sum_probs=89.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHccCChhHHHHHHHHHhhCCCC-CC
Q 008022          312 IDGFAKAGNLLGASQIWNRMISNGCSPNV----------------VAYTCMVKVLCQNNMFHQAHSLIEKMAFENCP-PN  374 (581)
Q Consensus       312 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~  374 (581)
                      ...+.+.|++++|.+.|..+.+.......                ..+..+...|...|++++|.+.+..+...... ++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            44556677777777777777665332211                01444555566666666666665554432100 11


Q ss_pred             h----hhHHHHHHHhhcCCChHHHHHHHHHHhh----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--
Q 008022          375 T----VTFNTFIKGLCGCGRVDWAMKLLDQMKQ----YECLP-NITTYNELLDGLLRVNRVKEAFELVTEIEKC--GI--  441 (581)
Q Consensus       375 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--  441 (581)
                      .    .+.+.+...+...|+++.+..+++....    .+..+ ...++..+...+...|++++|..+++++...  +.  
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            1    1122222333344555555555554422    11111 1223444555555555555555555544321  00  


Q ss_pred             -cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-c-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          442 -QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE--GTK-L-D--AITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       442 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                       +.....+..++..|...|++++|..++++....  ... | .  ...+..++..+...|++++|...+..+.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             111234444455555555555555555554432  011 1 0  12233344444445555555555554443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.45  E-value=5.3e-07  Score=67.51  Aligned_cols=85  Identities=18%  Similarity=0.112  Sum_probs=53.7

Q ss_pred             cCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHH
Q 008022          458 AGMVVEAFQLLGKMLIEG--TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQE  534 (581)
Q Consensus       458 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~  534 (581)
                      .|++++|+..|+++++.+  -+.+..++..++.+|...|++++|++.++++.+   ..| +...+..++.++...|++++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK---QFPNHQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHcCCHHH
Confidence            466667777777776642  123445666677777777777777777777766   334 45566677777777777777


Q ss_pred             HHHHHHHHHHc
Q 008022          535 AFIYLQKMLNE  545 (581)
Q Consensus       535 A~~~~~~~~~~  545 (581)
                      |+..++++++.
T Consensus        80 A~~~~~~al~~   90 (117)
T 3k9i_A           80 GVELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            77777777653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.44  E-value=7.3e-07  Score=85.29  Aligned_cols=117  Identities=11%  Similarity=0.027  Sum_probs=53.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022          419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN  498 (581)
Q Consensus       419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  498 (581)
                      .+...|++++|.+.+++..+.. +.+...+..+..++.+.|++++|++.++++++.. +.+...+..++.+|...|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence            3444555555555555555442 2334455555555555555555555555555542 2344445555555555555555


Q ss_pred             HHHHHHHHhcCCCCCC-CHHhHHHHHHH--HHccCCHHHHHHHHH
Q 008022          499 AIQLLDRIRGGGEWNP-DIISYTSLLWG--ICNSGGMQEAFIYLQ  540 (581)
Q Consensus       499 A~~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~  540 (581)
                      |++.++++.+   +.| +...+..+..+  +.+.|++++|++.++
T Consensus        93 A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVK---VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHH---HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            5555555544   222 22233333333  444455555555444

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.43  E-value=1.9e-06  Score=69.00  Aligned_cols=133  Identities=13%  Similarity=0.045  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc-cc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCc-CHH
Q 008022          412 TYNELLDGLLRVNRVKEAFELVTEIEKCGIQ-LN----IVTYNTILHGVCRAGMVVEAFQLLGKMLIEG----TKL-DAI  481 (581)
Q Consensus       412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~  481 (581)
                      ++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|.+.+++.....    .++ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4556666667777777777777766543100 11    1356667777777888888888887776531    011 134


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          482 TFNIIIYAYCKQGKVNNAIQLLDRIRGGG---EWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      ++..++.++...|++++|.+.++++.+..   +..+ ...++..++..+...|++++|...+++..+
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            56677778888888888888887765411   1111 234567777888888888888888887764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.42  E-value=1.6e-06  Score=82.52  Aligned_cols=150  Identities=9%  Similarity=-0.024  Sum_probs=112.8

Q ss_pred             CChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc---------------HHHHHHHHH
Q 008022          389 GRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN---------------IVTYNTILH  453 (581)
Q Consensus       389 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~  453 (581)
                      +++++|...|+...... +.....+..+...+.+.|++++|+..|++.++.. +.+               ...|..+..
T Consensus       248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHH
Confidence            34445555444333211 1234567788889999999999999999988753 222               578888899


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCH
Q 008022          454 GVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGM  532 (581)
Q Consensus       454 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~  532 (581)
                      +|.+.|++++|+..+++++... +.+...+..++.+|...|++++|+..|+++.+   +.| +...+..+..++...|+.
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999875 45788899999999999999999999999998   556 566788888888888888


Q ss_pred             HHHHH-HHHHHHH
Q 008022          533 QEAFI-YLQKMLN  544 (581)
Q Consensus       533 ~~A~~-~~~~~~~  544 (581)
                      ++|.+ .+.+|..
T Consensus       402 ~~a~~~~~~~~f~  414 (457)
T 1kt0_A          402 NERDRRIYANMFK  414 (457)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHh
Confidence            87764 4566644

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.42  E-value=6e-07  Score=67.23  Aligned_cols=85  Identities=12%  Similarity=0.003  Sum_probs=60.1

Q ss_pred             cCCHHHHHHHHHHHHHcC--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 008022          423 VNRVKEAFELVTEIEKCG--IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAI  500 (581)
Q Consensus       423 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  500 (581)
                      .|++++|+..|++..+.+  -+.+...+..+..++...|++++|...++++++.. +.+..++..++.++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence            467777777777777643  13345667777777888888888888888887764 445777777888888888888888


Q ss_pred             HHHHHHhc
Q 008022          501 QLLDRIRG  508 (581)
Q Consensus       501 ~~~~~~~~  508 (581)
                      +.++++..
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888776

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.41  E-value=4.1e-06  Score=64.66  Aligned_cols=98  Identities=18%  Similarity=0.064  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CC
Q 008022          447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL------D-----AITFNIIIYAYCKQGKVNNAIQLLDRIRGG----GE  511 (581)
Q Consensus       447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~  511 (581)
                      .+......+.+.|++++|+..|++.+...+..      +     ...|..++.++.+.|++++|+..++++.+.    ..
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            34445556667777777777777777653220      2     237888888999999999999999988872    11


Q ss_pred             CCCC-HHhH----HHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          512 WNPD-IISY----TSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       512 ~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      +.|+ ...|    ...+.++...|++++|+..|+++++
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            2774 5578    8899999999999999999999876

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.40  E-value=1.1e-06  Score=70.27  Aligned_cols=135  Identities=14%  Similarity=-0.032  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC----
Q 008022          445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK-LD----AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD----  515 (581)
Q Consensus       445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~----  515 (581)
                      ..++..+...+...|++++|...+++....... ++    ..++..++..+...|++++|.+.++++.+.....++    
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            346777888899999999999999998865211 11    246888999999999999999999997652211112    


Q ss_pred             HHhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          516 IISYTSLLWGICNSGGMQEAFIYLQKMLNE----GICPN-FATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      ..++..++..+...|++++|...++++++.    +..+. ...+..+...+...|++++|.+.+++.++
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            457788899999999999999999998653    11111 34567788889999999999999998764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.40  E-value=1.9e-06  Score=66.52  Aligned_cols=97  Identities=11%  Similarity=-0.021  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-------------HHhHHHHHHHHHccCCHHHHHHHHHHHHHc-
Q 008022          480 AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-------------IISYTSLLWGICNSGGMQEAFIYLQKMLNE-  545 (581)
Q Consensus       480 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-  545 (581)
                      ...+...+..+.+.|++++|+..|+++.+   +.|+             ...|..++.++.+.|++++|+..++++++. 
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~---l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAME---ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            34567778889999999999999999988   4454             238999999999999999999999999883 


Q ss_pred             ----CCCCC-HHhH----HHHHHHHHhccCCCChHHHHHHHhh
Q 008022          546 ----GICPN-FATW----NVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       546 ----~~~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                          .+.|+ ...|    .....++...|++++|+..+++.++
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence                11676 4567    8889999999999999999998875

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.39  E-value=6e-06  Score=78.65  Aligned_cols=133  Identities=10%  Similarity=-0.050  Sum_probs=95.8

Q ss_pred             ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008022          374 NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPN--------------ITTYNELLDGLLRVNRVKEAFELVTEIEKC  439 (581)
Q Consensus       374 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  439 (581)
                      ....+..+...+.+.|+++.|...|++..+......              ...|..+..+|.+.|++++|+..++++++.
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            455677777888888888888888888876431111              467777888888888888888888888876


Q ss_pred             CCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHhc
Q 008022          440 GIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQ-LLDRIRG  508 (581)
Q Consensus       440 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~  508 (581)
                      . +.+...|..+..+|...|++++|+..|+++++.. +.+..++..+..++...|+++++.+ .+.++..
T Consensus       347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4 5567778888888888888888888888888764 3355677778888888888777653 4444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.39  E-value=1.1e-05  Score=61.50  Aligned_cols=93  Identities=11%  Similarity=-0.024  Sum_probs=71.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHH
Q 008022          414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNI---VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD---AITFNIII  487 (581)
Q Consensus       414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~  487 (581)
                      ..+...+...|++++|...|+.+.+.. +.+.   ..+..+..++...|++++|...+++++... +.+   ...+..++
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la   83 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence            345667778888888888888887753 2233   467777888888889999998888888764 223   56778888


Q ss_pred             HHHHhcCCHHHHHHHHHHHhc
Q 008022          488 YAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       488 ~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      .++...|++++|+..++++..
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            888889999999999988887

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.39  E-value=6.2e-06  Score=65.93  Aligned_cols=101  Identities=16%  Similarity=0.059  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc--------C---------CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022          412 TYNELLDGLLRVNRVKEAFELVTEIEKC--------G---------IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE  474 (581)
Q Consensus       412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  474 (581)
                      .+......+.+.|++++|+..|...+..        .         .+.+...|..+..+|.+.|++++|+..+++++..
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            3444555566666666666666665543        0         1234467888888999999999999999999987


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCH
Q 008022          475 GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDI  516 (581)
Q Consensus       475 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~  516 (581)
                      . +.+...|..++.+|...|++++|+..|+++.+   +.|+.
T Consensus        93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~---l~p~~  130 (162)
T 3rkv_A           93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR---NHPAA  130 (162)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCGGG
T ss_pred             C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh---cCCCC
Confidence            5 55788899999999999999999999999988   56753

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.39  E-value=2.9e-06  Score=78.06  Aligned_cols=88  Identities=13%  Similarity=-0.043  Sum_probs=58.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHhHHH
Q 008022          479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICP-NFATWNV  556 (581)
Q Consensus       479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~  556 (581)
                      +..+|..++.+|.+.|++++|++.++++.+   +.| +...+..++.+|...|++++|+..|+++++.  .| +...+..
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~  346 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAE  346 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence            445677777777777777777777777777   345 5667777777777777777777777777764  34 3445555


Q ss_pred             HHHHHHhccCCCChH
Q 008022          557 LVRSLFSNLGHLGPV  571 (581)
Q Consensus       557 l~~~~~~~g~~~~a~  571 (581)
                      +..++...++.+++.
T Consensus       347 l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          347 LLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555554443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.37  E-value=1.4e-06  Score=83.26  Aligned_cols=120  Identities=13%  Similarity=-0.023  Sum_probs=94.9

Q ss_pred             hHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 008022            3 EKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFS   82 (581)
Q Consensus         3 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (581)
                      ..+.++|++++|...|++.++..+. +..++..+..+|.+.|++++|++.++++.+..+ .+...+..+..++...|+++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence            3567889999999999999987544 788999999999999999999999999998765 57788888999999999999


Q ss_pred             hHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCChhHHHHHHHH
Q 008022           83 MINPIYSNMKRDGMEPNVFTYNILLKA--LCKNNRVDGAYKLLVE  125 (581)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~  125 (581)
                      +|...|+++.+.. +.+...+..+..+  +.+.|++++|.+.+++
T Consensus        92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999988764 3445556666555  7788999999998883

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.37  E-value=5.1e-06  Score=76.37  Aligned_cols=121  Identities=9%  Similarity=-0.038  Sum_probs=94.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 008022          413 YNELLDGLLRVNRVKEAFELVTEIEKC---------------GIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK  477 (581)
Q Consensus       413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  477 (581)
                      +..+...+.+.|++++|++.|++.++.               ..+.+...|..+..+|.+.|++++|++.++++++.. +
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p  304 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P  304 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence            455566666777777777777766641               113346778888999999999999999999999875 4


Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHH
Q 008022          478 LDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFI  537 (581)
Q Consensus       478 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~  537 (581)
                      .+...+..++.+|...|++++|++.++++.+   +.| +...+..+..++...++.+++.+
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~---l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQALADLKKAQE---IAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788899999999999999999999999988   456 56677778878777777776654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.35  E-value=5.6e-05  Score=71.82  Aligned_cols=199  Identities=8%  Similarity=-0.094  Sum_probs=142.8

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCCCCc----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC
Q 008022          276 LIHGLCSNGSMDEAVSVSYQMEENSCPPN----------------VTTYSALIDGFAKAGNLLGASQIWNRMISNG-CSP  338 (581)
Q Consensus       276 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~  338 (581)
                      -...+...|++++|.+.+..+.+......                ...+..++..|...|++++|.+.+..+...- ..+
T Consensus        10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            34567889999999999999988643211                1236778899999999999999999876531 112


Q ss_pred             Chh----hHHHHHHHHHccCChhHHHHHHHHHhhC----C-CCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhC--CC-
Q 008022          339 NVV----AYTCMVKVLCQNNMFHQAHSLIEKMAFE----N-CPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY--EC-  406 (581)
Q Consensus       339 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-  406 (581)
                      +..    +.+.+...+...|+++.+..+++.....    + ......++..+...+...|++++|..+++.+...  +. 
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            221    2233334455678999999999887542    2 1223456778899999999999999999987432  11 


Q ss_pred             --CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCccc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022          407 --LPNITTYNELLDGLLRVNRVKEAFELVTEIEKC----GIQLN--IVTYNTILHGVCRAGMVVEAFQLLGKMLIE  474 (581)
Q Consensus       407 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  474 (581)
                        +.....+..++..|...|++++|..+++.....    +.++.  ...+..+...+...|++++|...+.+....
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence              112347788899999999999999999987642    11111  245566667777889999999999888764

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.35  E-value=1.2e-06  Score=64.89  Aligned_cols=94  Identities=16%  Similarity=0.070  Sum_probs=66.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-------
Q 008022          479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-------  550 (581)
Q Consensus       479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------  550 (581)
                      +...+..++..+...|++++|++.++++.+   ..| +...+..++.++...|++++|+..++++++.  .|+       
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~   77 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT---AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIR   77 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHH
Confidence            445667777777788888888888887776   345 5667777777888888888888888887763  444       


Q ss_pred             HHhHHHHHHHHHhccCCCChHHHHHHH
Q 008022          551 FATWNVLVRSLFSNLGHLGPVYILDDI  577 (581)
Q Consensus       551 ~~~~~~l~~~~~~~g~~~~a~~~~~~~  577 (581)
                      ...+..+..++...|+.++|++.++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence            445566666777777777776655443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.33  E-value=5.6e-05  Score=73.61  Aligned_cols=172  Identities=11%  Similarity=0.039  Sum_probs=132.4

Q ss_pred             ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC
Q 008022          390 RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNR----------VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG  459 (581)
Q Consensus       390 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  459 (581)
                      ..++|++.++.+...+ +.+...|+.-..++...|+          ++++++.++.+.+.. +-+..+|..-...+.+.+
T Consensus        44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence            3457788888887765 3345566666666666666          889999999998874 557778888788888888


Q ss_pred             --CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHcc------
Q 008022          460 --MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG-KVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNS------  529 (581)
Q Consensus       460 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~------  529 (581)
                        +++++++.++++++.. +-+..+|+.-..++.+.| .++++++.++++.+   ..| +..+|+.....+...      
T Consensus       122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~l~~~~~~  197 (567)
T 1dce_A          122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQLHPQPDS  197 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHhhcccccc
Confidence              6799999999999876 558888998888888888 89999999999988   456 777888887777653      


Q ss_pred             --------CCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhccCCCC
Q 008022          530 --------GGMQEAFIYLQKMLNEGICP-NFATWNVLVRSLFSNLGHLG  569 (581)
Q Consensus       530 --------g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~  569 (581)
                              +.++++++++++++..  .| +...|..+...+...++.++
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence                    5679999999999874  45 46677777777777666544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.32  E-value=2.3e-06  Score=77.84  Aligned_cols=146  Identities=12%  Similarity=-0.026  Sum_probs=70.1

Q ss_pred             hhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH
Q 008022          376 VTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGV  455 (581)
Q Consensus       376 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  455 (581)
                      ..+..+...+...|++++|...|++.....  |+...       +...++.+++...+          ...+|..+..++
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence            344555556666666666666666655432  22211       11122222222111          113666777778


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHH-HHccCCHH
Q 008022          456 CRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWG-ICNSGGMQ  533 (581)
Q Consensus       456 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~  533 (581)
                      .+.|++++|+..+++++... +.+...+..++.+|...|++++|+..|+++.+   +.| +...+..+... ....+..+
T Consensus       241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~---l~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK---YAPDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888887764 44677788888888888888888888888877   445 34455555544 23445666


Q ss_pred             HHHHHHHHHHH
Q 008022          534 EAFIYLQKMLN  544 (581)
Q Consensus       534 ~A~~~~~~~~~  544 (581)
                      .+...|.+|..
T Consensus       317 ~a~~~~~~~l~  327 (338)
T 2if4_A          317 KQKEMYKGIFK  327 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHHHhhC
Confidence            77777777765

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.31  E-value=1.7e-06  Score=66.66  Aligned_cols=97  Identities=10%  Similarity=-0.024  Sum_probs=54.0

Q ss_pred             cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhcCCCCCC-CHHhHHHHHHHH
Q 008022          458 AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKV----------NNAIQLLDRIRGGGEWNP-DIISYTSLLWGI  526 (581)
Q Consensus       458 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~  526 (581)
                      .+.+++|.+.+++.+... +.+...|..++.++...+++          ++|+..|+++.+   +.| +..+|..++.+|
T Consensus        15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG~ay   90 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHHHHH
Confidence            344555555555555543 33555555555555554443          366666666665   445 445566666666


Q ss_pred             Hcc-----------CCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 008022          527 CNS-----------GGMQEAFIYLQKMLNEGICPNFATWNVLVRS  560 (581)
Q Consensus       527 ~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  560 (581)
                      ...           |++++|++.|+++++  +.|+...|...+..
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~  133 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            554           366777777777766  45665555444433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.25  E-value=2.7e-06  Score=77.42  Aligned_cols=147  Identities=11%  Similarity=-0.065  Sum_probs=83.4

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 008022          410 ITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYA  489 (581)
Q Consensus       410 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  489 (581)
                      ...+..+...+.+.|++++|...|+.....  .|+...       +...|+.+++...+          ...++..++.+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence            344556666677778888888888877764  333321       12233333333222          11378889999


Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHH-HHhccC
Q 008022          490 YCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF-ATWNVLVRS-LFSNLG  566 (581)
Q Consensus       490 ~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~-~~~~g~  566 (581)
                      |.+.|++++|+..++++.+   +.| +...|..++.+|...|++++|+..|+++++  +.|+. ..+..+... ....+.
T Consensus       240 ~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~  314 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLT---EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKAL  314 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998   456 678999999999999999999999999987  35553 444444444 233466


Q ss_pred             CCChHHHHHHHhhc
Q 008022          567 HLGPVYILDDIMAN  580 (581)
Q Consensus       567 ~~~a~~~~~~~~~~  580 (581)
                      .+++.+.+++++..
T Consensus       315 ~~~a~~~~~~~l~~  328 (338)
T 2if4_A          315 YQKQKEMYKGIFKG  328 (338)
T ss_dssp             --------------
T ss_pred             HHHHHHHHHHhhCC
Confidence            77888888887753

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.21  E-value=5.2e-05  Score=58.31  Aligned_cols=111  Identities=14%  Similarity=0.021  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHH
Q 008022          424 NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK----QGKVNNA  499 (581)
Q Consensus       424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A  499 (581)
                      +++++|++.|++..+.| .++..    +...|...+.+++|.+.|++..+.|   +......+...|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            35677777777777766 33332    5555666667777888887777754   56667777777777    6788888


Q ss_pred             HHHHHHHhcCCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHHcC
Q 008022          500 IQLLDRIRGGGEWNPDIISYTSLLWGICN----SGGMQEAFIYLQKMLNEG  546 (581)
Q Consensus       500 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  546 (581)
                      .++|++..+.    -++..+..|...|..    .+++++|..+|+++.+.|
T Consensus        81 ~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcC----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            8888887772    356667777777777    678888888888887765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.21  E-value=7.3e-05  Score=72.82  Aligned_cols=173  Identities=11%  Similarity=0.065  Sum_probs=131.1

Q ss_pred             ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCC----------hHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 008022          355 MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGR----------VDWAMKLLDQMKQYECLPNITTYNELLDGLLRVN  424 (581)
Q Consensus       355 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  424 (581)
                      ..++|+..++++...+ |.+..+|+.--.++...|+          ++++++.++.+.+.+ +-+...|..-...+.+.+
T Consensus        44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence            3456677777777664 5555666655555555555          788888888887765 446677887777888888


Q ss_pred             --CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--------
Q 008022          425 --RVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG-MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ--------  493 (581)
Q Consensus       425 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------  493 (581)
                        +++++++.++.+.+.. +-+..+|+.-...+.+.| .++++.+.++++++.. +.+..+|+....++...        
T Consensus       122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence              6699999999998875 557788888777778888 8899999999998875 45778888887777663        


Q ss_pred             ------CCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHH
Q 008022          494 ------GKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQE  534 (581)
Q Consensus       494 ------g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~  534 (581)
                            +.++++++.+.++..   +.| +...|..+.+.+.+.++.++
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~---~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHH---HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccHHHHHHHHHHHHHHHh---hCCCCccHHHHHHHHHhcCCCccc
Confidence                  567999999999988   567 67789999888888777444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.11  E-value=3.2e-06  Score=62.44  Aligned_cols=93  Identities=13%  Similarity=0.134  Sum_probs=63.0

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCC-------H
Q 008022          444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPD-------I  516 (581)
Q Consensus       444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~-------~  516 (581)
                      +...+..+...+...|++++|.+.+++.+... +.+...+..++.++...|++++|++.++++.+   +.|+       .
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~   78 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRS   78 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHH
Confidence            34556667777778888888888888887764 44677777888888888888888888888877   4453       3


Q ss_pred             HhHHHHHHHHHccCCHHHHHHHHH
Q 008022          517 ISYTSLLWGICNSGGMQEAFIYLQ  540 (581)
Q Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~  540 (581)
                      ..+..+..++...|+++.|+..++
T Consensus        79 ~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           79 KLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHhHhhhHhHHH
Confidence            445555555555555555444333

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.08  E-value=3.7e-05  Score=72.96  Aligned_cols=127  Identities=9%  Similarity=-0.067  Sum_probs=89.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHc-----C--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-Cc-CHHHHH
Q 008022          419 GLLRVNRVKEAFELVTEIEKC-----G--IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE-----GT-KL-DAITFN  484 (581)
Q Consensus       419 ~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~  484 (581)
                      .+...|++++|+.++++.++.     |  .+....+++.+...|...|++++|..++++.+..     |. .| ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            355678888888888876542     1  1123457788888888899999998888887743     21 12 234578


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCC-HHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          485 IIIYAYCKQGKVNNAIQLLDRIRG-----GGEWNPD-IISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       485 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      .|+..|...|++++|+.+++++.+     .+.-.|+ ..+...+..++...+.+++|..+|.++.+.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999988888753     2222342 335567777788888999999999888653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.06  E-value=1.4e-05  Score=59.37  Aligned_cols=63  Identities=13%  Similarity=-0.026  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ...+..+...+...|++++|...+++.+... +.+...+..++.+|...|++++|+..|+++.+
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444444444444444444444444444432 22333444444444444444444444444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.02  E-value=5.7e-05  Score=53.03  Aligned_cols=60  Identities=27%  Similarity=0.376  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          482 TFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      .+..++..+...|++++|+..++++.+   ..| +...+..++.++...|++++|...++++.+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALE---LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            444444445555555555555555444   122 334444455555555555555555555544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.01  E-value=1.9e-05  Score=60.87  Aligned_cols=93  Identities=15%  Similarity=0.081  Sum_probs=69.5

Q ss_pred             hcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 008022          422 RVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM----------VVEAFQLLGKMLIEGTKLDAITFNIIIYAYC  491 (581)
Q Consensus       422 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  491 (581)
                      +.+.+++|.+.++...+.. +.+...|..+..++...++          +++|+..|++.++.+ +.+..+|..++.+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence            3455677777777777664 4566677666666666655          468999999998875 447778888999988


Q ss_pred             hcC-----------CHHHHHHHHHHHhcCCCCCCCHHhH
Q 008022          492 KQG-----------KVNNAIQLLDRIRGGGEWNPDIISY  519 (581)
Q Consensus       492 ~~g-----------~~~~A~~~~~~~~~~~~~~p~~~~~  519 (581)
                      ..|           ++++|++.|+++.+   ++|+...|
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~---l~P~~~~y  127 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHY  127 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHH---hCCCCHHH
Confidence            764           89999999999998   67875544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.99  E-value=0.00036  Score=53.56  Aligned_cols=108  Identities=9%  Similarity=-0.096  Sum_probs=67.6

Q ss_pred             ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh----cCCHHHHH
Q 008022          390 RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR----AGMVVEAF  465 (581)
Q Consensus       390 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~  465 (581)
                      ++++|.+.|++..+.+ .++..    +...|...+.+++|++.|+...+.|   +......+...|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            4566666666666555 22222    4455555556666777777666654   44555556666665    66777777


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhc
Q 008022          466 QLLGKMLIEGTKLDAITFNIIIYAYCK----QGKVNNAIQLLDRIRG  508 (581)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  508 (581)
                      ++|++..+.|   ++..+..+...|..    .+++++|.+++++..+
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence            7777777654   45566667777766    6677777777777766

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.98  E-value=2.8e-05  Score=73.77  Aligned_cols=126  Identities=10%  Similarity=-0.010  Sum_probs=94.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHC-----CC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCC-HHhHH
Q 008022          454 GVCRAGMVVEAFQLLGKMLIE-----GT-KL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRG-----GGEWNPD-IISYT  520 (581)
Q Consensus       454 ~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~p~-~~~~~  520 (581)
                      .+...|++++|+.++++.+..     |. .| -..+++.++.+|...|++++|+.+++++.+     .+.-.|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            456789999999999998854     21 11 245689999999999999999999998764     2333453 45789


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHc---CCCCCH----HhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          521 SLLWGICNSGGMQEAFIYLQKMLNE---GICPNF----ATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       521 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      .|+..|...|++++|..+++++++-   -+.|+.    .+...+..++...+.+++|..+++++-+
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988542   122442    3344556677778889999988887643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.97  E-value=7.2e-05  Score=52.49  Aligned_cols=83  Identities=19%  Similarity=0.189  Sum_probs=69.8

Q ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHH
Q 008022          444 NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSL  522 (581)
Q Consensus       444 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l  522 (581)
                      +...+..+...+...|++++|...+++.+... +.+...+..++.++...|++++|+..++++.+   ..| +...+..+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~l   83 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE---LDPNNAEAKQNL   83 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCHHHHHHH
Confidence            45677888889999999999999999999875 45788899999999999999999999999988   446 56677777


Q ss_pred             HHHHHccC
Q 008022          523 LWGICNSG  530 (581)
Q Consensus       523 ~~~~~~~g  530 (581)
                      ..++...|
T Consensus        84 ~~~~~~~g   91 (91)
T 1na3_A           84 GNAKQKQG   91 (91)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            77766543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.96  E-value=6.7e-05  Score=55.61  Aligned_cols=79  Identities=15%  Similarity=0.133  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHH
Q 008022          463 EAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQK  541 (581)
Q Consensus       463 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~  541 (581)
                      +|.+.+++++... +.+...+..++.+|...|++++|+..++++.+   ..| +...|..++.+|...|++++|...|++
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALD---FDPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5678888888764 45788999999999999999999999999998   456 577899999999999999999999999


Q ss_pred             HHHc
Q 008022          542 MLNE  545 (581)
Q Consensus       542 ~~~~  545 (581)
                      +++.
T Consensus        79 al~~   82 (115)
T 2kat_A           79 GLAA   82 (115)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9763

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.93  E-value=5.4e-05  Score=54.38  Aligned_cols=84  Identities=12%  Similarity=0.020  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHhHHH
Q 008022          479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEG-ICPNFATWNV  556 (581)
Q Consensus       479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~  556 (581)
                      +...+..++.+|...|++++|++.|+++.+   ..| +...|..++.+|...|++++|+..|+++++.. -.++......
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVE---TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            455666666666666777777777766666   334 44566666666666777777777666665421 1234444444


Q ss_pred             HHHHHHhcc
Q 008022          557 LVRSLFSNL  565 (581)
Q Consensus       557 l~~~~~~~g  565 (581)
                      +...+...+
T Consensus        83 l~~~l~~~~   91 (100)
T 3ma5_A           83 LQDAKLKAE   91 (100)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHcc
Confidence            444444433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.90  E-value=3.7e-05  Score=55.27  Aligned_cols=66  Identities=11%  Similarity=0.036  Sum_probs=48.5

Q ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +.+...+..+...+...|++++|+..|+++++.. +.+...|..++.+|...|++++|++.++++.+
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3456667777777778888888888888877764 34566777778888888888888888877765

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.82  E-value=1.9e-07  Score=84.15  Aligned_cols=425  Identities=12%  Similarity=0.075  Sum_probs=211.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022           29 SEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK  108 (581)
Q Consensus        29 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (581)
                      .+.+|..++.++.+.|...+|++-|-+.      .|+..|..++.+..+.|.+++-...+....+.  ..++.+=+.++-
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~  124 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF  124 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence            5678888999999888888887655322      45567888999999999999999988877665  344455568888


Q ss_pred             HHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHH
Q 008022          109 ALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLL  188 (581)
Q Consensus       109 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  188 (581)
                      +|++.++..+..+++       ..|+..-...+.+-|...|.++.|.-+|..++    -|..|...+.+.|++..|.+.-
T Consensus       125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is----N~akLAstLV~L~~yq~AVdaA  193 (624)
T 3lvg_A          125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----NFGRLASTLVHLGEYQAAVDGA  193 (624)
T ss_dssp             HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC----CCTTTSSSSSSCSGGGSSTTTT
T ss_pred             HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc----cHHHHHHHHHHHHHHHHHHHHH
Confidence            999988866543332       23566666777788888888877777666542    1223333344444444443322


Q ss_pred             HHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 008022          189 CEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLP  268 (581)
Q Consensus       189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  268 (581)
                      ++      --++.||..+-.+|...+.+..|.-.--.++-.     +.-...++..|-..|.+++.+.+++.-.... ..
T Consensus       194 rK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rA  261 (624)
T 3lvg_A          194 RK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RA  261 (624)
T ss_dssp             TT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TC
T ss_pred             Hh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-ch
Confidence            11      114445555555555555554443332222211     1112223333444444444444444433211 11


Q ss_pred             CHHhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCC------CcHHhHHHHHHHHHhcCCHHHHHHHH-------------
Q 008022          269 NVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN-SCP------PNVTTYSALIDGFAKAGNLLGASQIW-------------  328 (581)
Q Consensus       269 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~-------------  328 (581)
                      ....|+-|.-.|++- ++++..+.++..-.+ ++|      -....|..+...|..-.+++.|....             
T Consensus       262 HmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~F  340 (624)
T 3lvg_A          262 HMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQF  340 (624)
T ss_dssp             CHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGG
T ss_pred             hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHH
Confidence            233343343333332 223222222211110 111      01223444444444444444332211             


Q ss_pred             HHHHhCCCCCChhh---------------HHHHHHHHHccCChhHHHHHHHHHhhC----------CCCCChhhHHHHHH
Q 008022          329 NRMISNGCSPNVVA---------------YTCMVKVLCQNNMFHQAHSLIEKMAFE----------NCPPNTVTFNTFIK  383 (581)
Q Consensus       329 ~~~~~~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~~~l~~  383 (581)
                      .+++..  ..|...               .+.|+.++...=+..++.+++++.-..          .-..+...-.++-.
T Consensus       341 kdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~  418 (624)
T 3lvg_A          341 KDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNN  418 (624)
T ss_dssp             TTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHH
T ss_pred             HHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHH
Confidence            000000  012222               233333333333444444444432110          00112233334445


Q ss_pred             HhhcCCChHHHHH------------HHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHH
Q 008022          384 GLCGCGRVDWAMK------------LLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTI  451 (581)
Q Consensus       384 ~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  451 (581)
                      .|....|++.-..            +-+++.++   +-...-......|.+.+++++++++.++         ...|.-.
T Consensus       419 L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDA  486 (624)
T 3lvg_A          419 LFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDA  486 (624)
T ss_dssp             HHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGG
T ss_pred             HHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHH
Confidence            5555555543322            22222221   2223334445556667777776654321         1123333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 008022          452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQL  502 (581)
Q Consensus       452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  502 (581)
                      +......|+.+-|.++++-..+.|   +..+|...+..|...=+++-++++
T Consensus       487 ietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl  534 (624)
T 3lvg_A          487 MQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET  534 (624)
T ss_dssp             GTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence            445566788888888888887755   556677777777776677776665

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.59  E-value=0.0084  Score=53.51  Aligned_cols=143  Identities=13%  Similarity=-0.022  Sum_probs=88.9

Q ss_pred             CCChhhHHHHHHHHH--hcC---CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh---cC--CHHH---HHHHHHHHHH
Q 008022          407 LPNITTYNELLDGLL--RVN---RVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR---AG--MVVE---AFQLLGKMLI  473 (581)
Q Consensus       407 ~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~---a~~~~~~~~~  473 (581)
                      +.+...|...+++..  ..+   ...+|..+|++..+.. |-....+..+..+|..   .+  ....   ....+.....
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            345555655554432  222   3467777777777752 2223444433333321   11  1111   1111221111


Q ss_pred             -CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022          474 -EGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA  552 (581)
Q Consensus       474 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  552 (581)
                       ...+.++.++..+...+...|++++|+..++++..   ++|+...|..++..+.-.|++++|.+.|+++..  +.|...
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~---Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~  344 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID---LEMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN  344 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence             11255777888887777778999999999999998   458888888888899999999999999999987  467777


Q ss_pred             hHH
Q 008022          553 TWN  555 (581)
Q Consensus       553 ~~~  555 (581)
                      +|.
T Consensus       345 t~~  347 (372)
T 3ly7_A          345 TLY  347 (372)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            664

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.47  E-value=0.0015  Score=49.76  Aligned_cols=80  Identities=14%  Similarity=0.134  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHH
Q 008022          462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG---KVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAF  536 (581)
Q Consensus       462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~  536 (581)
                      ..+.+.|.+....+ +++..+...++.++++++   ++++++.+++.+.+..  .|  +...+-.+..++.+.|++++|+
T Consensus        15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHH
Confidence            33444444444443 345555555555555555   4445555555555411  13  2334445555555556666666


Q ss_pred             HHHHHHHH
Q 008022          537 IYLQKMLN  544 (581)
Q Consensus       537 ~~~~~~~~  544 (581)
                      ++++.+++
T Consensus        92 ~y~~~lL~   99 (152)
T 1pc2_A           92 KYVRGLLQ   99 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66655555

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.42  E-value=0.00056  Score=63.74  Aligned_cols=88  Identities=7%  Similarity=-0.126  Sum_probs=66.3

Q ss_pred             hcCCHHHHHHHHHHHHHC---CCCc-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCC-HHhHHHHH
Q 008022          457 RAGMVVEAFQLLGKMLIE---GTKL-D---AITFNIIIYAYCKQGKVNNAIQLLDRIRG-----GGEWNPD-IISYTSLL  523 (581)
Q Consensus       457 ~~~~~~~a~~~~~~~~~~---~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~p~-~~~~~~l~  523 (581)
                      ..|++++|+.++++.+..   -+.| +   ..+++.++.+|...|++++|+.+++++.+     .+.-.|+ ..+++.|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            357888888888887753   1112 2   34678889999999999999999988753     2333453 44788999


Q ss_pred             HHHHccCCHHHHHHHHHHHHH
Q 008022          524 WGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       524 ~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      ..|..+|++++|..+++++++
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999998854

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.41  E-value=0.0014  Score=45.67  Aligned_cols=64  Identities=16%  Similarity=0.062  Sum_probs=33.9

Q ss_pred             cCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          478 LDAITFNIIIYAYCKQGK---VNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       478 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      .++..+..++.++...++   .++|..+++++.+   +.| ++.....++..+...|++++|+..|+++++
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~---~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ---LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344555555555543333   4555555555555   344 444555555555555555555555555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.41  E-value=0.0039  Score=55.61  Aligned_cols=74  Identities=11%  Similarity=0.067  Sum_probs=63.0

Q ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHH
Q 008022          442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYT  520 (581)
Q Consensus       442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~  520 (581)
                      +.+..++..+...+...|++++|...+++++..+  |+...|..++..+.-.|++++|.+.++++..   +.|...+|.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~  347 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY  347 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence            5677888888777777899999999999999975  6777888888999999999999999999998   678776653

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.39  E-value=0.00049  Score=49.11  Aligned_cols=56  Identities=18%  Similarity=0.229  Sum_probs=34.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAI-TFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ...+...|++++|.+.+++++... +.+.. .+..++.+|...|++++|++.|+++.+
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344556666666666666666553 33445 566666666666666666666666665

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.34  E-value=0.0049  Score=42.96  Aligned_cols=67  Identities=10%  Similarity=-0.000  Sum_probs=52.6

Q ss_pred             cccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 008022          442 QLNIVTYNTILHGVCRAGM---VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGG  509 (581)
Q Consensus       442 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  509 (581)
                      +.++..+..+..++...++   .++|..++++.+... +.+......++..+.+.|++++|+..|+++.+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4566777777777765554   688888888888875 557778888888888899999999999988873

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.33  E-value=0.0026  Score=59.43  Aligned_cols=93  Identities=9%  Similarity=-0.019  Sum_probs=71.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCC---CCc-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCC-HHh
Q 008022          452 LHGVCRAGMVVEAFQLLGKMLIEG---TKL-D---AITFNIIIYAYCKQGKVNNAIQLLDRIRG-----GGEWNPD-IIS  518 (581)
Q Consensus       452 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~p~-~~~  518 (581)
                      +..+.+.|++++|+.++++.+...   +.| +   ..+++.++.+|...|++++|+.+++++..     .++-.|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            445667889999999999988541   122 2   34688889999999999999999998764     2334453 447


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          519 YTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       519 ~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      ++.|+..|...|++++|..+++++++
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88999999999999999999998853

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.16  E-value=0.0037  Score=47.54  Aligned_cols=85  Identities=11%  Similarity=0.085  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHH
Q 008022          426 VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG---MVVEAFQLLGKMLIEGTKL--DAITFNIIIYAYCKQGKVNNAI  500 (581)
Q Consensus       426 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~  500 (581)
                      ...+.+.|.+....+ +++..+...+..++++.+   +.++++.+++...+.. .|  +...+..++-+|.+.|++++|+
T Consensus        14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            345555666555555 467777777777888877   5668888888888764 23  4667777888888888888888


Q ss_pred             HHHHHHhcCCCCCCC
Q 008022          501 QLLDRIRGGGEWNPD  515 (581)
Q Consensus       501 ~~~~~~~~~~~~~p~  515 (581)
                      +.++.+.+   +.|+
T Consensus        92 ~y~~~lL~---ieP~  103 (152)
T 1pc2_A           92 KYVRGLLQ---TEPQ  103 (152)
T ss_dssp             HHHHHHHH---HCTT
T ss_pred             HHHHHHHh---cCCC
Confidence            88888888   5674

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.14  E-value=0.043  Score=46.86  Aligned_cols=83  Identities=13%  Similarity=0.088  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHcc-
Q 008022          461 VVEAFQLLGKMLIEGTKLD---AITFNIIIYAYCK-----QGKVNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNS-  529 (581)
Q Consensus       461 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~-  529 (581)
                      ...|...++++++.  .|+   ...|..++..|..     -|+.++|.+.|+++.+   +.|  +..++..+++.++.. 
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~  253 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPL  253 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhc
Confidence            57788888888885  444   5678888888888     4999999999999998   667  367778888888874 


Q ss_pred             CCHHHHHHHHHHHHHcCCC
Q 008022          530 GGMQEAFIYLQKMLNEGIC  548 (581)
Q Consensus       530 g~~~~A~~~~~~~~~~~~~  548 (581)
                      |+.++|.+++++.+.....
T Consensus       254 gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          254 NNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             TCHHHHHHHHHHHHHCCGG
T ss_pred             CCHHHHHHHHHHHHcCCCC
Confidence            9999999999999886544

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.12  E-value=6.1e-05  Score=68.35  Aligned_cols=265  Identities=11%  Similarity=0.108  Sum_probs=163.2

Q ss_pred             CHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHH
Q 008022           64 TVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVS  143 (581)
Q Consensus        64 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  143 (581)
                      .+.+|..+.++....+...+|++.|-   +   ..|+..|..++....+.|.+++-.+.+.-.++..-  ++.+-+.|+-
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~  124 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF  124 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence            45567777777777777766665441   1   23555677777777777777777777766555422  4445567777


Q ss_pred             HHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHH
Q 008022          144 SICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGIL  223 (581)
Q Consensus       144 ~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  223 (581)
                      +|.+.++..+-.+++.  .++..-...+..-|...|.++.|.-+|..+         .-|..|...+.+.|++..|.+.-
T Consensus       125 ayAk~~rL~elEefl~--~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~AVdaA  193 (624)
T 3lvg_A          125 ALAKTNRLAELEEFIN--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGA  193 (624)
T ss_dssp             HHHTSCSSSTTTSTTS--CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGSSTTTT
T ss_pred             HHHhhCcHHHHHHHHc--CCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777655443322  344555556666666667766666555332         22334444556666666665433


Q ss_pred             HHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 008022          224 GQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPP  303 (581)
Q Consensus       224 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  303 (581)
                      ++      ..++.+|..+-.+|...+.+.-|.-.--.+.-.     +.....++..|-..|.+++-+.+++.-... -..
T Consensus       194 rK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErA  261 (624)
T 3lvg_A          194 RK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERA  261 (624)
T ss_dssp             TT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTC
T ss_pred             Hh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-Cch
Confidence            22      337889999999999999888765543333322     112334566788899999999998887643 245


Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC------CChhhHHHHHHHHHccCChhHHH
Q 008022          304 NVTTYSALIDGFAKAGNLLGASQIWNRMISN-GCS------PNVVAYTCMVKVLCQNNMFHQAH  360 (581)
Q Consensus       304 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~~~~~~a~  360 (581)
                      ....|+.+.-.|++- .+++..+.++..-++ +++      -....|..++..|..-.+++.|.
T Consensus       262 HmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          262 HMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             CHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            777888888888775 345554444432221 221      13445677777777777777654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.10  E-value=0.0043  Score=44.00  Aligned_cols=58  Identities=17%  Similarity=0.251  Sum_probs=45.5

Q ss_pred             hHhhhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 008022            3 EKLGEKCEIDGVQYLLQQMKVEGVSCSEG-VFISVINSYRRVGLAEQALKMFYRIREFGL   61 (581)
Q Consensus         3 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~   61 (581)
                      ..+.+.|++++|...|+..++..+. +.. .+..+..+|...|++++|++.|+++....+
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p   66 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP   66 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            3567788888888888888877543 666 888888888888888888888888887654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.05  E-value=0.0023  Score=59.60  Aligned_cols=86  Identities=9%  Similarity=-0.039  Sum_probs=63.2

Q ss_pred             cCCHHHHHHHHHHHHHc---CCcc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CcC-HHHHHHHHH
Q 008022          423 VNRVKEAFELVTEIEKC---GIQL----NIVTYNTILHGVCRAGMVVEAFQLLGKMLIE-----GT-KLD-AITFNIIIY  488 (581)
Q Consensus       423 ~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~  488 (581)
                      .|++++|..++++..+.   -+.|    ...+++.+..+|...|++++|+.++++++..     |. .|+ ..+++.++.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            46788888888876542   1112    2457788888899999999999998888743     21 122 345888999


Q ss_pred             HHHhcCCHHHHHHHHHHHhc
Q 008022          489 AYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       489 ~~~~~g~~~~A~~~~~~~~~  508 (581)
                      .|...|++++|+.+++++.+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            99999999999999988765

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.96  E-value=0.0065  Score=43.56  Aligned_cols=66  Identities=9%  Similarity=0.083  Sum_probs=37.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-----CCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE-----WNPDIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      +..-+..++..+.+.|+++.|..+++.+.+...     -.+....+..++.++.+.|+++.|+.+++++++
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            334445566666666666666666665544210     012344566666666666666666666666665

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.92  E-value=0.45  Score=48.43  Aligned_cols=151  Identities=11%  Similarity=0.036  Sum_probs=69.8

Q ss_pred             HHccCChhHHHHHHHHHhhCCCCCChhhHHHH--HHHhhcCCChHHHHHHHHHHhhCCCCCChh-hHH---HHHHHHHhc
Q 008022          350 LCQNNMFHQAHSLIEKMAFENCPPNTVTFNTF--IKGLCGCGRVDWAMKLLDQMKQYECLPNIT-TYN---ELLDGLLRV  423 (581)
Q Consensus       350 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~---~l~~~~~~~  423 (581)
                      +.-.|+.+....++..+....   +..+...+  .-++...|+.+.+..+.+.+...   .+.. -|.   .+.-+|+..
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGT  573 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGT  573 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTS
T ss_pred             hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCC
Confidence            445556555556655554321   22222222  22333556666666666666542   1222 121   223345566


Q ss_pred             CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH-HHHHHH
Q 008022          424 NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKV-NNAIQL  502 (581)
Q Consensus       424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~  502 (581)
                      |+.....++++.+.... ..+......+.-++...|+.+.+.++++.+...+ .|....-..++-+....|.. .++++.
T Consensus       574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~  651 (963)
T 4ady_A          574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV  651 (963)
T ss_dssp             CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence            66655555666666531 2222222223333344555555555555444433 33333233333333333433 456666


Q ss_pred             HHHHhc
Q 008022          503 LDRIRG  508 (581)
Q Consensus       503 ~~~~~~  508 (581)
                      +..+..
T Consensus       652 L~~L~~  657 (963)
T 4ady_A          652 LDPLTK  657 (963)
T ss_dssp             HHHHHT
T ss_pred             HHHHcc
Confidence            666664

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.88  E-value=0.0048  Score=57.63  Aligned_cols=92  Identities=10%  Similarity=0.076  Sum_probs=68.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcC---Ccc----cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-Cc-CHHH
Q 008022          417 LDGLLRVNRVKEAFELVTEIEKCG---IQL----NIVTYNTILHGVCRAGMVVEAFQLLGKMLIE-----GT-KL-DAIT  482 (581)
Q Consensus       417 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~~  482 (581)
                      +..+...|++++|+.++++..+..   +.|    ...+++.++..|...|++++|+.++++++..     |. .| -..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            344556788899999888876431   122    2457788888899999999999999888743     21 12 2345


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          483 FNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       483 ~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ++.++..|...|++++|+.+++++.+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88899999999999999999988764

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.86  E-value=0.0082  Score=43.02  Aligned_cols=68  Identities=3%  Similarity=-0.162  Sum_probs=53.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Q 008022           28 CSEGVFISVINSYRRVGLAEQALKMFYRIREFG------LKPTVKIYNHILDALLAENRFSMINPIYSNMKRDG   95 (581)
Q Consensus        28 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~   95 (581)
                      .+...+..++..+.+.|++..|..+|+.+.+..      ..+...++..+..++.+.|+++.|...++++.+..
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            467778888999999999999999998887531      12456678888888888888888888888887663

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.55  E-value=0.083  Score=54.62  Aligned_cols=45  Identities=13%  Similarity=0.084  Sum_probs=22.1

Q ss_pred             HccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHH
Q 008022          211 CDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRM  261 (581)
Q Consensus       211 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  261 (581)
                      ...|+++.|.++.+.+      .+...|..+...+.+.++++.|.+.|.++
T Consensus       663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4445555555543321      23445555555555555555555555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.51  E-value=0.058  Score=39.37  Aligned_cols=88  Identities=14%  Similarity=0.115  Sum_probs=55.1

Q ss_pred             cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCH
Q 008022          458 AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN---AIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGM  532 (581)
Q Consensus       458 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~  532 (581)
                      ......+.+.|.+....| .++..+-..++.++.++.+...   ++.+++.+....  .|  .....-.|+.++.+.|++
T Consensus        14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhH
Confidence            334455555565555544 3666777777777777766555   777777766621  23  233455666677777777


Q ss_pred             HHHHHHHHHHHHcCCCCC
Q 008022          533 QEAFIYLQKMLNEGICPN  550 (581)
Q Consensus       533 ~~A~~~~~~~~~~~~~~~  550 (581)
                      ++|+++++.+++  +.|+
T Consensus        91 ~~A~~~~~~lL~--~eP~  106 (126)
T 1nzn_A           91 EKALKYVRGLLQ--TEPQ  106 (126)
T ss_dssp             HHHHHHHHHHHH--HCTT
T ss_pred             HHHHHHHHHHHH--hCCC
Confidence            777777777776  3554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.43  E-value=0.99  Score=46.01  Aligned_cols=272  Identities=13%  Similarity=0.069  Sum_probs=147.1

Q ss_pred             HHHccCChhHHHHHHHHHHHcCCCCCcc--cHHHHHHHHHccCCHHHHHHHHHHHHhCCC-------CCCHHhHHHHHHH
Q 008022          209 SLCDVGNVETSLGILGQMFVRGCNPNIH--SFTSLLKGYLLGGRTHEASDLWNRMIREGF-------LPNVVAYSTLIHG  279 (581)
Q Consensus       209 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~  279 (581)
                      +....|+.++++.++......+...+..  .-..+.-+....|..+++.+++.......-       .+....-..+.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            3456778888877776655421011211  222233344555665677787776665311       0111112223333


Q ss_pred             HHhcCC-hhhHHHHHHHHHhCCCCCcHHhHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHccC
Q 008022          280 LCSNGS-MDEAVSVSYQMEENSCPPNVTTYS--ALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKV--LCQNN  354 (581)
Q Consensus       280 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~  354 (581)
                      ++..|. -+++.+.+..+..... +......  .+...+.-.|+.+....++..+.+.   .+......+..+  +...|
T Consensus       463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g  538 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYG  538 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred             HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCC
Confidence            333443 2456666666665421 1111112  2333455667878788888877664   233444444443  44678


Q ss_pred             ChhHHHHHHHHHhhCCCCCChhh--HHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008022          355 MFHQAHSLIEKMAFENCPPNTVT--FNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFEL  432 (581)
Q Consensus       355 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  432 (581)
                      +.+.+..+++.+.... .|....  ...+.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.++
T Consensus       539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl  616 (963)
T 4ady_A          539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI  616 (963)
T ss_dssp             CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred             ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence            8899999988887642 222211  1234567889999888888998887632 22333233333344556777777777


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022          433 VTEIEKCGIQLNIVTYNTILHGVCRAGMV-VEAFQLLGKMLIEGTKLDAITFNIIIYAY  490 (581)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  490 (581)
                      +..+.+.+ .|....-..+.-+....|+. .++..++..+..   .++..+-..-+.++
T Consensus       617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL  671 (963)
T 4ady_A          617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL  671 (963)
T ss_dssp             TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred             HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence            77666653 45444444444444445554 678889988875   34555443333333

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.41  E-value=0.027  Score=41.11  Aligned_cols=87  Identities=10%  Similarity=0.077  Sum_probs=60.9

Q ss_pred             CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHH
Q 008022          424 NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVE---AFQLLGKMLIEGTKL--DAITFNIIIYAYCKQGKVNN  498 (581)
Q Consensus       424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~  498 (581)
                      .....+.+-|......| .++..+-..+..++.+..+...   ++.+++.+.+.+ .|  .......++-++.+.|+|++
T Consensus        15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence            34445555666555555 3666666667777777776655   888888887764 23  45567778888889999999


Q ss_pred             HHHHHHHHhcCCCCCCC
Q 008022          499 AIQLLDRIRGGGEWNPD  515 (581)
Q Consensus       499 A~~~~~~~~~~~~~~p~  515 (581)
                      |.+.++.+.+   +.|+
T Consensus        93 A~~~~~~lL~---~eP~  106 (126)
T 1nzn_A           93 ALKYVRGLLQ---TEPQ  106 (126)
T ss_dssp             HHHHHHHHHH---HCTT
T ss_pred             HHHHHHHHHH---hCCC
Confidence            9999999888   5563

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.18  Score=39.48  Aligned_cols=130  Identities=11%  Similarity=0.076  Sum_probs=85.4

Q ss_pred             HHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCH
Q 008022          382 IKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMV  461 (581)
Q Consensus       382 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  461 (581)
                      .......|+++.|.++.+.+      .+...|..|.......|+++-|.+.|.....         +..+.-.|...|+.
T Consensus        12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred             HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence            34455678888888887654      4677888888888888888888888877653         22344455667887


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHH
Q 008022          462 VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQK  541 (581)
Q Consensus       462 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  541 (581)
                      +.-.++-+.....| .     ++....++...|+++++++++.+.-.    -|...      ......|-.+.|.++.++
T Consensus        77 e~L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA~------~~A~t~g~~~~a~~~~~~  140 (177)
T 3mkq_B           77 NKLSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGS----LPLAY------AVAKANGDEAAASAFLEQ  140 (177)
T ss_dssp             HHHHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHH------HHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCC----hHHHH------HHHHHcCcHHHHHHHHHH
Confidence            77776666665554 2     34445566677888888888866544    12211      112235667777777766


Q ss_pred             H
Q 008022          542 M  542 (581)
Q Consensus       542 ~  542 (581)
                      +
T Consensus       141 ~  141 (177)
T 3mkq_B          141 A  141 (177)
T ss_dssp             T
T ss_pred             h
Confidence            5

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.21  E-value=0.051  Score=40.72  Aligned_cols=117  Identities=11%  Similarity=0.049  Sum_probs=71.6

Q ss_pred             cccHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCcCHH-HHHHHHH------HHHhcCCHHHHHHHHHHHhc
Q 008022          442 QLNIVTYNTILHGVCRAGMV------VEAFQLLGKMLIEGTKLDAI-TFNIIIY------AYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       442 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +-|..+|-..+....+.|++      ++.+++|+++... ++|+.. .|...+.      .+...+|+++|.++|+.+..
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            34556666666666666666      6667777777664 344321 1111111      12345788899999988876


Q ss_pred             CCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008022          509 GGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLF  562 (581)
Q Consensus       509 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  562 (581)
                      . + +.=...|...+..-.++|+...|.+++.+++..+-. +...+...++.+.
T Consensus        89 ~-h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl~  139 (161)
T 4h7y_A           89 N-C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNLN  139 (161)
T ss_dssp             H-C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHHH
T ss_pred             H-h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhhh
Confidence            3 1 222667777777778899999999999999876533 3344455554443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.16  E-value=0.045  Score=56.63  Aligned_cols=112  Identities=19%  Similarity=0.251  Sum_probs=61.7

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHH
Q 008022           41 RRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAY  120 (581)
Q Consensus        41 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  120 (581)
                      ...|++++|.++...+      .+...|..+...+.+.++++.|.++|..+..         |..+...+...|+.+...
T Consensus       663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~  727 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV  727 (814)
T ss_dssp             HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred             hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence            3445555555443221      4556677777777777777777777766542         334444444455555555


Q ss_pred             HHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 008022          121 KLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGSGVSVYNALINGLCKEHKIEEAFWLLCE  190 (581)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  190 (581)
                      ++-+.....|      -+.....+|...|++++|+++                 |.+.+++++|..+-+.
T Consensus       728 ~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~-----------------~~~~~~~~~A~~lA~~  774 (814)
T 3mkq_A          728 TLAKDAETTG------KFNLAFNAYWIAGDIQGAKDL-----------------LIKSQRFSEAAFLGST  774 (814)
T ss_dssp             HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHH-----------------HHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcC------chHHHHHHHHHcCCHHHHHHH-----------------HHHcCChHHHHHHHHH
Confidence            5444444432      123333445556666666554                 5567777777776654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.91  E-value=0.32  Score=35.62  Aligned_cols=56  Identities=18%  Similarity=0.105  Sum_probs=23.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +......|.-++-.+++..++.. .+|++..+..++.+|.+.|+..+|.+++.++-+
T Consensus        98 Ld~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A           98 LDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            33344444444444444443332 234444444444444444444444444444443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.91  E-value=0.19  Score=37.68  Aligned_cols=51  Identities=16%  Similarity=0.038  Sum_probs=28.0

Q ss_pred             CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008022          424 NRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG  475 (581)
Q Consensus       424 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  475 (581)
                      +++++|.++|+.+++.+-. =...|......-.+.|++..|.+++.+.+..+
T Consensus        74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            5566666666666543212 14444444444455666666666666666654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.45  Score=37.24  Aligned_cols=102  Identities=11%  Similarity=0.141  Sum_probs=63.2

Q ss_pred             HHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 008022          349 VLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKE  428 (581)
Q Consensus       349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  428 (581)
                      ...+.|+++.|.++.+.+      .+...|..|.......|+++-|.+.|.....         +..+.-.|...|+.+.
T Consensus        14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~   78 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK   78 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred             HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence            345667777777776654      4567777777777777777777777776653         2344445556677666


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 008022          429 AFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKM  471 (581)
Q Consensus       429 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  471 (581)
                      -.++-+.....| .     ++.....+...|+++++.+++.+.
T Consensus        79 L~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           79 LSKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence            555555554443 1     223334455677777777777443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.87  E-value=0.064  Score=45.84  Aligned_cols=88  Identities=15%  Similarity=0.046  Sum_probs=63.6

Q ss_pred             ChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCcc
Q 008022           10 EIDGVQYLLQQMKVEGVSC-SEGVFISVINSYRR-----VGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAE-NRFS   82 (581)
Q Consensus        10 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (581)
                      ....|..++++.++.++.. +...|..+...|..     -|+.++|.+.|++.+..++.-+..++......++.. |+.+
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence            3456777777777765442 35577777887877     388888888888888876544577777777777774 8888


Q ss_pred             hHHHHHHHHHhCCCC
Q 008022           83 MINPIYSNMKRDGME   97 (581)
Q Consensus        83 ~a~~~~~~~~~~~~~   97 (581)
                      .+...+++.......
T Consensus       258 ~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          258 GFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHcCCCC
Confidence            888888888877544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.71  E-value=0.4  Score=35.14  Aligned_cols=140  Identities=13%  Similarity=0.087  Sum_probs=96.6

Q ss_pred             hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHH
Q 008022          386 CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAF  465 (581)
Q Consensus       386 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  465 (581)
                      ...|..++..++..+....   .+..-+|.++--....-+-+-..++++.+-+.   .|          ....|+.....
T Consensus        18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi   81 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV   81 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred             HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence            3457777777777776652   34445555555555555555555555544332   11          12456666666


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          466 QLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      ..+-.+     ..+.......+..+...|+-++-.+++..+..  +..|++...-.+..+|.+.|+..+|.+++.++-+.
T Consensus        82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            666554     33556667777888999999999999998654  35678899999999999999999999999999998


Q ss_pred             CCC
Q 008022          546 GIC  548 (581)
Q Consensus       546 ~~~  548 (581)
                      |++
T Consensus       155 G~k  157 (172)
T 1wy6_A          155 GEK  157 (172)
T ss_dssp             TCH
T ss_pred             hhH
Confidence            864

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.11  E-value=0.62  Score=42.78  Aligned_cols=70  Identities=17%  Similarity=0.092  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCCHHhHH
Q 008022          483 FNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN-----EGICPNFATWN  555 (581)
Q Consensus       483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~  555 (581)
                      ...++..+...|++++|+..+..+..   ..| +...|..++.+|.+.|+..+|++.|+++.+     .|+.|.+.+-.
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~---~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTF---EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            45567778889999999999998887   456 777899999999999999999999988743     48899887754

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.97  E-value=0.18  Score=50.11  Aligned_cols=52  Identities=12%  Similarity=0.091  Sum_probs=32.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022          488 YAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKM  542 (581)
Q Consensus       488 ~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (581)
                      ..|...|+++-|+++.+++..   ..| +..+|..|..+|...|+++.|+-.++.+
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            344456666666666666665   445 4556666666666666666666666655

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.76  E-value=2.7  Score=39.31  Aligned_cols=50  Identities=8%  Similarity=0.101  Sum_probs=33.2

Q ss_pred             CChhhHHHHHHHHHhC-----CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 008022          284 GSMDEAVSVSYQMEEN-----SCPPNVTTYSALIDGFAKAGNLLGASQIWNRMIS  333 (581)
Q Consensus       284 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  333 (581)
                      |+++.|++.+..+.+.     +..........++..|...++++...+.+..+..
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk   84 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK   84 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            5677777776665542     2344566677777888888888877776665544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.56  E-value=0.96  Score=33.21  Aligned_cols=67  Identities=13%  Similarity=0.117  Sum_probs=38.6

Q ss_pred             cccHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          442 QLNIVTYNTILHGVCRAGMV---VEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       442 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      .|+..+--.+..++.+..+.   .+++.+++.+.+.+..-....+..++-++.+.|++++|.+..+.+.+
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            44555544455555555433   45666666666554222345556666666667777777777776666

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.93  E-value=2.5  Score=39.56  Aligned_cols=51  Identities=16%  Similarity=0.289  Sum_probs=32.7

Q ss_pred             CCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC
Q 008022           44 GLAEQALKMFYRIRE-----FGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRD   94 (581)
Q Consensus        44 g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~   94 (581)
                      |++++|++.+-.+.+     .+..........++..|...|+++...+.+..+.+.
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk   85 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK   85 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            567777766644442     223345667777778888888887777766665544

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.89  E-value=5.2  Score=39.12  Aligned_cols=200  Identities=10%  Similarity=-0.028  Sum_probs=107.1

Q ss_pred             CChhhHHHHHHHHHhCCCCCcHHhHHHHHH----HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHH
Q 008022          284 GSMDEAVSVSYQMEENSCPPNVTTYSALID----GFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQA  359 (581)
Q Consensus       284 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  359 (581)
                      .+.+.|...+....+.. ..+......+-.    .....+...++...+.......  ++.....-.+....+.++++.|
T Consensus       228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a  304 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL  304 (618)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred             cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence            37788988888876543 223333222222    2233342456666666655432  3444444455555677999999


Q ss_pred             HHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 008022          360 HSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKC  439 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  439 (581)
                      ...|+.+.... .......--+..+....|+.++|..+|..+...   .  ..|..+.  ..+.|..-.. .    .  .
T Consensus       305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~--~fYg~lA--a~~Lg~~~~~-~----~--~  369 (618)
T 1qsa_A          305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R--GFYPMVA--AQRIGEEYEL-K----I--D  369 (618)
T ss_dssp             HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C--SHHHHHH--HHHTTCCCCC-C----C--C
T ss_pred             HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C--ChHHHHH--HHHcCCCCCC-C----C--C
Confidence            99998886542 123444455667778889999999999988752   1  1233332  1222221000 0    0  0


Q ss_pred             CCcc---cHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008022          440 GIQL---NIV---TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLD  504 (581)
Q Consensus       440 ~~~~---~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  504 (581)
                      ...+   ...   .-...+..+...|....|...+..+...   .+......+.......|.++.++....
T Consensus       370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~  437 (618)
T 1qsa_A          370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI  437 (618)
T ss_dssp             CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            0000   000   0112234466778888888777776653   233333445555556666666654443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.86  E-value=0.83  Score=33.55  Aligned_cols=73  Identities=15%  Similarity=0.086  Sum_probs=58.4

Q ss_pred             CCCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 008022          475 GTKLDAITFNIIIYAYCKQGKV---NNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICP  549 (581)
Q Consensus       475 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  549 (581)
                      +..|+..+-..++.++.++.+.   .+++.+++.+...   .|  ....+-.|..++.+.|++++|+++.+.+++  +.|
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP  109 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HER  109 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCT
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCC
Confidence            3478888888899999988754   5688899888772   35  345677888899999999999999999998  567


Q ss_pred             CHH
Q 008022          550 NFA  552 (581)
Q Consensus       550 ~~~  552 (581)
                      +..
T Consensus       110 ~N~  112 (134)
T 3o48_A          110 NNK  112 (134)
T ss_dssp             TCH
T ss_pred             CCH
Confidence            643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.82  E-value=0.49  Score=47.14  Aligned_cols=54  Identities=7%  Similarity=-0.053  Sum_probs=41.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008022          453 HGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIR  507 (581)
Q Consensus       453 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  507 (581)
                      ..+...|+++-|+++.++....- +.+..+|..|+.+|...|+++.|+-.+..+.
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            34556788888888888887763 4467788888888888888888888887764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.52  E-value=1.7  Score=32.36  Aligned_cols=66  Identities=12%  Similarity=0.092  Sum_probs=29.7

Q ss_pred             ccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          443 LNIVTYNTILHGVCRAGM---VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       443 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      |+..+-..+..++.+..+   ..+++.+++.+.+.+..-....+..++-++.+.|++++|.++.+.+.+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            344443334444444433   234445555554433222333444444555555555555555555554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.45  E-value=1.8  Score=32.30  Aligned_cols=69  Identities=13%  Similarity=0.050  Sum_probs=41.7

Q ss_pred             CcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCC--CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 008022          477 KLDAITFNIIIYAYCKQGK---VNNAIQLLDRIRGGGEWNP--DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN  550 (581)
Q Consensus       477 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  550 (581)
                      .|+..+-..++.++.++.+   ..+++.+++.+...   .|  .....-.|..++.+.|++++|+++.+.+++  +.|+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~  109 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN  109 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence            4566666666666666654   33566666666652   23  233444556667777777777777777766  3554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.43  E-value=0.45  Score=36.55  Aligned_cols=114  Identities=9%  Similarity=0.001  Sum_probs=65.7

Q ss_pred             hhHhhhcCChhHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHH
Q 008022            2 IEKLGEKCEIDGVQYLLQQMKVEG-VSCS-------EGVFISVINSYRRVGLAEQALKMFYRIREF--GLKPTVKIYNHI   71 (581)
Q Consensus         2 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l   71 (581)
                      ++.+...|.++.|+-+...++... .+++       ..++..++.++...|++..|...|+++++.  ....+......+
T Consensus        27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~  106 (167)
T 3ffl_A           27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST  106 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            456778899999998888766521 1122       136677888999999999999999987642  111111111000


Q ss_pred             HHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 008022           72 LDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGN  128 (581)
Q Consensus        72 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  128 (581)
                       .   .......         ......+......+..++...+++++|+.+++.+..
T Consensus       107 -~---~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~  150 (167)
T 3ffl_A          107 -G---NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS  150 (167)
T ss_dssp             -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred             -c---ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence             0   0000000         011133445555677788888888888888887644

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.37  E-value=1.1  Score=47.95  Aligned_cols=145  Identities=12%  Similarity=0.042  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC------------------
Q 008022           33 FISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRD------------------   94 (581)
Q Consensus        33 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------   94 (581)
                      ...++..+...|.++.|.++.....     .++..--.+..++...|++++|..+|++....                  
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence            3344555555566555555443222     22222233345556666666666666554211                  


Q ss_pred             --C--CCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCc----chHHHHHHHHHccCCHHHHHHHHHHhC---C
Q 008022           95 --G--MEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDA----VSYTTIVSSICKLGQVEEARELAMRFG---S  163 (581)
Q Consensus        95 --~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~---~  163 (581)
                        .  ...-...|..++..+.+.+.++.+.++-....+...+.+.    ..|..+++.+...|++++|...+...|   .
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~  969 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL  969 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence              0  0112235777888888888888888877766554221121    246778888888899998888776662   2


Q ss_pred             CcchHHHHHHHHHhcCChh
Q 008022          164 GVSVYNALINGLCKEHKIE  182 (581)
Q Consensus       164 ~~~~~~~l~~~~~~~~~~~  182 (581)
                      -......|+..++..+..+
T Consensus       970 r~~cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          970 KKSCLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             CHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHhCCChh
Confidence            2344555555555555433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.34  E-value=1.6  Score=33.54  Aligned_cols=27  Identities=22%  Similarity=0.182  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIR  507 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~  507 (581)
                      +.-..+..+|.+.|++++|+.+++.+.
T Consensus       123 Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          123 EVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            333445555555555555555555443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.24  E-value=7.8  Score=41.57  Aligned_cols=126  Identities=10%  Similarity=0.088  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHH
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDA----ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTS  521 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~  521 (581)
                      .-|..++..+.+.+.++.+.++-..++....+.+.    ..|..+.+.+...|++++|-..+..+...   .-....+..
T Consensus       900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~~r~~cLr~  976 (1139)
T 4fhn_B          900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---PLKKSCLLD  976 (1139)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---SSCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---HHHHHHHHH
Confidence            34667777788888888888888777765322222    25677888888888999888888777651   123456667


Q ss_pred             HHHHHHccCCHHH------------HHHHHHH-HHHc-CCCCCHHhHHHHHHHHHhccCCCChHHHH
Q 008022          522 LLWGICNSGGMQE------------AFIYLQK-MLNE-GICPNFATWNVLVRSLFSNLGHLGPVYIL  574 (581)
Q Consensus       522 l~~~~~~~g~~~~------------A~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  574 (581)
                      |+..++..|..+.            ..+++.. +... .....+..|..|..-....|++.+|..++
T Consensus       977 LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B          977 FVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp             HHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence            7776666555433            3333322 2111 11112234444555556678888777554

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=92.04  E-value=0.93  Score=31.15  Aligned_cols=78  Identities=21%  Similarity=0.172  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022           31 GVFISVINSYRRV-G-LAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK  108 (581)
Q Consensus        31 ~~~~~l~~~~~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (581)
                      +.+..-...|+.. . +.-+.++.++.+......|++.+..+.+++|.+.+++..|.++|+-++..- .+...+|..+++
T Consensus         9 eeF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E            9 EEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             HHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            3333334444433 2 455777777888777777888888888888888888888888888776542 233445666654


Q ss_pred             H
Q 008022          109 A  109 (581)
Q Consensus       109 ~  109 (581)
                      -
T Consensus        88 E   88 (109)
T 1v54_E           88 E   88 (109)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.61  E-value=7.8  Score=35.27  Aligned_cols=244  Identities=9%  Similarity=-0.023  Sum_probs=129.8

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHHcc-CChhHHHHHHHHHhhCCCCCChhhH-
Q 008022          305 VTTYSALIDGFAKAGNLLGASQIWNRMISN-GCSP---NVVAYTCMVKVLCQN-NMFHQAHSLIEKMAFENCPPNTVTF-  378 (581)
Q Consensus       305 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~-  378 (581)
                      ......+...|.+.|+.++..+++...... +..|   .......++..+... +..+.-.++..+..+.. .....+| 
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl   97 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            455677888899999999888888776443 1111   122455666666553 33344444444443321 1112222 


Q ss_pred             -----HHHHHHhhcCCChHHHHHHHHHHhhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCcccHH
Q 008022          379 -----NTFIKGLCGCGRVDWAMKLLDQMKQYECLPN-----ITTYNELLDGLLRVNRVKEAFELVTEIEKC--GIQLNIV  446 (581)
Q Consensus       379 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~  446 (581)
                           ..++..|...|++.+|.+++..+.+.-...|     ...+..-+..|...+++.++...+......  .+.+++.
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~  177 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK  177 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence                 2577888888999998888888754211112     123445566777888888888888876532  2223333


Q ss_pred             HHHH----HHHHHH-hcCCHHHHHHHHHHHHHCCCCcCHH----HHHHHHHHHHhcCCHHHHHHHHH-HHhcCCCCCCCH
Q 008022          447 TYNT----ILHGVC-RAGMVVEAFQLLGKMLIEGTKLDAI----TFNIIIYAYCKQGKVNNAIQLLD-RIRGGGEWNPDI  516 (581)
Q Consensus       447 ~~~~----l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~p~~  516 (581)
                      .-..    -...+. ..+++.+|...|-+....-......    ....++-+-.-.++..+-..++. ...... ..|+.
T Consensus       178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~-~~pei  256 (394)
T 3txn_A          178 VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY-SGRDI  256 (394)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT-CSHHH
T ss_pred             HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc-CCccH
Confidence            3221    122345 6788888888777665331111111    11112222222344444334332 222212 34666


Q ss_pred             HhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 008022          517 ISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA  552 (581)
Q Consensus       517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  552 (581)
                      ..+..++.+ ...+++.+...+++.... .+..|+.
T Consensus       257 ~~l~~L~~a-~~~~dl~~f~~iL~~~~~-~l~~D~~  290 (394)
T 3txn_A          257 DAMKSVAEA-SHKRSLADFQAALKEYKK-ELAEDVI  290 (394)
T ss_dssp             HHHHHHHHH-HHTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred             HHHHHHHHH-HHhCCHHHHHHHHHHHHH-HHhcChH
Confidence            555556555 445667666666665533 2444544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.52  E-value=1.7  Score=39.92  Aligned_cols=67  Identities=4%  Similarity=0.030  Sum_probs=40.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCcCHHH
Q 008022          415 ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE-----GTKLDAIT  482 (581)
Q Consensus       415 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~  482 (581)
                      .++..+...|+++++...+..+.... +.+...+..++.++.+.|+..+|.+.|++..+.     |+.|+..+
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            34455556666666666666665542 456666666666666666666666666665432     56665554

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.57  E-value=8.2  Score=33.70  Aligned_cols=187  Identities=11%  Similarity=-0.002  Sum_probs=101.4

Q ss_pred             hhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH---
Q 008022           11 IDGVQYLLQQMKVEGVS-CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINP---   86 (581)
Q Consensus        11 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---   86 (581)
                      .++.+.-++.-++.|.- -....+..+..-|.+++++++|++++..-.               ..+.+.|+...|.+   
T Consensus        13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~   77 (312)
T 2wpv_A           13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIF   77 (312)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHH
Confidence            33334444444444311 234455566666777788888877664332               22334455444333   


Q ss_pred             -HHHHHHhCCCCCChhhHHHHHHHHHhcCCh-----hHHHHHHHHHhhCCC--CCCcchHHHHHHHHHccCCHHHHHHHH
Q 008022           87 -IYSNMKRDGMEPNVFTYNILLKALCKNNRV-----DGAYKLLVEMGNKGC--APDAVSYTTIVSSICKLGQVEEARELA  158 (581)
Q Consensus        87 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~  158 (581)
                       +.+...+.+.+++......++..+.....-     .-..+...+..+.|-  .-++..+..+...|.+.|++.+|...|
T Consensus        78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~  157 (312)
T 2wpv_A           78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF  157 (312)
T ss_dssp             HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence             344445556677777667777666543221     112222333333322  236677888888888999999988877


Q ss_pred             HHhC-CCcchHHHHHHHHHhc---CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHH
Q 008022          159 MRFG-SGVSVYNALINGLCKE---HKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMF  227 (581)
Q Consensus       159 ~~~~-~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  227 (581)
                      -... .+...+..++.-+...   |...++--.+-+.              ++ -|.-.|+...|..+++...
T Consensus       158 i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra--------------VL-~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          158 MLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL--------------VF-NYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH--------------HH-HHHHTTBHHHHHHHHHHHH
T ss_pred             HhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH--------------HH-HHHHhcCHHHHHHHHHHHH
Confidence            6332 2466666666655555   6555543222221              12 2334667777777776654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.53  E-value=1.1  Score=37.83  Aligned_cols=117  Identities=11%  Similarity=0.032  Sum_probs=76.0

Q ss_pred             hhHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC
Q 008022            2 IEKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLK--PTVKIYNHILDALLAEN   79 (581)
Q Consensus         2 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~   79 (581)
                      +..+.+.|++++|+.....-++..+. |......+++.++-.|+++.|.+-++.+.+..+.  |....|..+|++-    
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----   78 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----   78 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH----
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH----
Confidence            34678899999999999988887654 8889999999999999999999988888875533  2223455555432    


Q ss_pred             CcchHHHHHHHHHhCCCCC-----ChhhHHHHHHHHH--hcCChhHHHHHHHHHhhC
Q 008022           80 RFSMINPIYSNMKRDGMEP-----NVFTYNILLKALC--KNNRVDGAYKLLVEMGNK  129 (581)
Q Consensus        80 ~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~  129 (581)
                            ..=.+...-+-.|     ...-...++.+..  ..|+.++|.++-++..+.
T Consensus        79 ------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~  129 (273)
T 1zbp_A           79 ------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  129 (273)
T ss_dssp             ------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence                  1112222211111     1223334444443  458888888887777543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=89.88  E-value=1.1  Score=37.83  Aligned_cols=116  Identities=15%  Similarity=0.040  Sum_probs=65.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHH
Q 008022          419 GLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNN  498 (581)
Q Consensus       419 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  498 (581)
                      .+.+.|+++++++....-++.. |.|...-..++..+|-.|++++|.+-++...+.  .|+...-..+...+.+      
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~------   76 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK------   76 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH------
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHH------
Confidence            4556778888888777777663 556667777778888888888888888777765  3333222111111111      


Q ss_pred             HHHHHHHHhcCCCCCC----C-HHhHHHHHHHHH--ccCCHHHHHHHHHHHHH
Q 008022          499 AIQLLDRIRGGGEWNP----D-IISYTSLLWGIC--NSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       499 A~~~~~~~~~~~~~~p----~-~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~  544 (581)
                      |...=..+.. ++-.|    . ..-...++.++.  ..|+.++|.++-.++.+
T Consensus        77 aE~~R~~vfa-G~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e  128 (273)
T 1zbp_A           77 AAQARKDFAQ-GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  128 (273)
T ss_dssp             HHHHHHHHTT-SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHc-CCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence            1111122222 22233    1 222344444443  45788888877777755

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=88.83  E-value=12  Score=33.01  Aligned_cols=114  Identities=16%  Similarity=0.101  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH----HHHHhCCCCCChhhHHH
Q 008022           30 EGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIY----SNMKRDGMEPNVFTYNI  105 (581)
Q Consensus        30 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~  105 (581)
                      ...+..+..-|.+++++++|++++..-               ...+.+.|+...+.++-    +...+.++++|......
T Consensus        35 HQ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~r   99 (336)
T 3lpz_A           35 AQETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGK   99 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            345556666677888888888765433               22334445544443333    44444566777766666


Q ss_pred             HHHHHHhcCChh-HHHHHHHHH----hhCC--CCCCcchHHHHHHHHHccCCHHHHHHHH
Q 008022          106 LLKALCKNNRVD-GAYKLLVEM----GNKG--CAPDAVSYTTIVSSICKLGQVEEARELA  158 (581)
Q Consensus       106 l~~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~  158 (581)
                      ++..+.....-+ .=.++.+++    .+.|  ..-|+.....+...|.+.+++.+|...|
T Consensus       100 L~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          100 LLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            666665443311 112222222    2222  2235566666777777777777776654

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=88.42  E-value=2.4  Score=31.00  Aligned_cols=59  Identities=15%  Similarity=0.221  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHH
Q 008022           84 INPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVS  143 (581)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  143 (581)
                      ..+-++.+...++-|++.+..+.+++|.+.+++..|.++|+-++.. ..+...+|..+++
T Consensus        72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq  130 (152)
T 2y69_E           72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence            3444444444455555555555555555555555555555555443 2223333444443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.26  E-value=3.5  Score=38.41  Aligned_cols=97  Identities=11%  Similarity=-0.133  Sum_probs=64.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHH---
Q 008022          412 TYNELLDGLLRVNRVKEAFELVTEIEKCG--IQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE-GTKLDAITFNI---  485 (581)
Q Consensus       412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~---  485 (581)
                      +...+...|.+.|++++|.+.+.++....  ...-...+..++..+...+++..+...+.++... .-.++....+.   
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            56678888888999999999998887642  2223456677778888888888888888887644 11223222221   


Q ss_pred             -HHHHHHhcCCHHHHHHHHHHHhc
Q 008022          486 -IIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       486 -l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                       -+..+...++|.+|.+.|-.+..
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhc
Confidence             22334456788888877776655

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=86.92  E-value=15  Score=32.07  Aligned_cols=81  Identities=17%  Similarity=0.117  Sum_probs=47.7

Q ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhcCCCCCCCHHhH
Q 008022          443 LNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ---GKVNNAIQLLDRIRGGGEWNPDIISY  519 (581)
Q Consensus       443 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~p~~~~~  519 (581)
                      -++.....+...|.+.|++.+|...|-    .+...|...+..++.-+...   |...++--++-+              
T Consensus       132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------  193 (312)
T 2wpv_A          132 GDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------  193 (312)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------
T ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------
Confidence            367778888888888999988887764    11112455555555444443   443332222211              


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHH
Q 008022          520 TSLLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       520 ~~l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                        .+-.|...|+...|..+++...
T Consensus       194 --aVL~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          194 --LVFNYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             --HHHHHHHTTBHHHHHHHHHHHH
T ss_pred             --HHHHHHHhcCHHHHHHHHHHHH
Confidence              1223556788888888877664

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=85.57  E-value=7  Score=26.98  Aligned_cols=44  Identities=16%  Similarity=0.287  Sum_probs=18.6

Q ss_pred             HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008022          394 AMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIE  437 (581)
Q Consensus       394 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  437 (581)
                      ..+-++.+...+..|++....+.+++|.+.+++.-|.++++.++
T Consensus        29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK   72 (109)
T 1v54_E           29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   72 (109)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33333333334444444444444444444444444444444433

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=85.29  E-value=5.5  Score=27.33  Aligned_cols=76  Identities=9%  Similarity=0.051  Sum_probs=35.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHH
Q 008022           44 GLAEQALKMFYRIREFGLKPTVKIYNHIL--DALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYK  121 (581)
Q Consensus        44 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  121 (581)
                      ...++|..+-+++...+   +.+ ...+|  ..+...|+|++|..+.+...    .||...|.++-..  +.|--+++..
T Consensus        21 H~HqEA~tIAdwL~~~~---~~E-~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~   90 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKG---EEE-AVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALES   90 (116)
T ss_dssp             TCHHHHHHHHHHHHHTT---CHH-HHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCC---cHH-HHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHH
Confidence            34555555555554422   111 12222  33445566666655544333    4555555444332  4455555555


Q ss_pred             HHHHHhhC
Q 008022          122 LLVEMGNK  129 (581)
Q Consensus       122 ~~~~~~~~  129 (581)
                      -+.++...
T Consensus        91 rL~~la~s   98 (116)
T 2p58_C           91 RLNRLARS   98 (116)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHhC
Confidence            55455444

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=84.77  E-value=20  Score=31.57  Aligned_cols=82  Identities=13%  Similarity=-0.004  Sum_probs=46.2

Q ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHH
Q 008022          442 QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTS  521 (581)
Q Consensus       442 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~  521 (581)
                      .-|+.....+...|.+.+++.+|...|-    .+..++...+..++.-+...+...++--++                .-
T Consensus       133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~dlfi----------------aR  192 (336)
T 3lpz_A          133 AGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAPLYC----------------AR  192 (336)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHHHHH----------------HH
T ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHHHHH----------------HH
Confidence            3466777778888888888888887762    232334456655554444433322221111                12


Q ss_pred             HHHHHHccCCHHHHHHHHHHHH
Q 008022          522 LLWGICNSGGMQEAFIYLQKML  543 (581)
Q Consensus       522 l~~~~~~~g~~~~A~~~~~~~~  543 (581)
                      .+--|...++...|..+++...
T Consensus       193 aVL~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          193 AVLPYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHH
Confidence            2223556777777777665554

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=83.45  E-value=8.8  Score=26.36  Aligned_cols=77  Identities=16%  Similarity=0.154  Sum_probs=42.7

Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITF-NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIY  538 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  538 (581)
                      ..++|..+-+-+...+   +..+. ..-+..+...|+|++|..+.+...     .||...|..|.  -.+.|..+++...
T Consensus        22 ~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALc--e~rlGl~s~le~r   91 (116)
T 2p58_C           22 YHEEANCIAEWLHLKG---EEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALC--EYRLGLGSALESR   91 (116)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHH--HHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHH--HHhcccHHHHHHH
Confidence            3456666655555543   22111 112235566777777777665443     37777665553  3466666666666


Q ss_pred             HHHHHHcC
Q 008022          539 LQKMLNEG  546 (581)
Q Consensus       539 ~~~~~~~~  546 (581)
                      +.++..+|
T Consensus        92 L~~la~sg   99 (116)
T 2p58_C           92 LNRLARSQ   99 (116)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHHhCC
Confidence            66665543

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=83.16  E-value=8.2  Score=26.45  Aligned_cols=77  Identities=16%  Similarity=0.037  Sum_probs=44.2

Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHH
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITF-NIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIY  538 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  538 (581)
                      ..++|..+-+-+...+   +..+. ..-+..+...|+|++|..+.+...     .||...|..|  +-.+.|..+++...
T Consensus        21 ~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~AL--ce~rlGl~s~le~r   90 (115)
T 2uwj_G           21 CHEEALCIAEWLERLG---QDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFAL--CEWHLGLGAALDRR   90 (115)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHH--HHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHH--HHHhcccHHHHHHH
Confidence            3466666665555543   22211 112345667778887777665433     4777776555  34567777777777


Q ss_pred             HHHHHHcC
Q 008022          539 LQKMLNEG  546 (581)
Q Consensus       539 ~~~~~~~~  546 (581)
                      +.++..+|
T Consensus        91 L~~la~sg   98 (115)
T 2uwj_G           91 LAGLGGSS   98 (115)
T ss_dssp             HHHHHTCS
T ss_pred             HHHHHhCC
Confidence            76666554

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=82.61  E-value=5.1  Score=27.40  Aligned_cols=50  Identities=12%  Similarity=0.070  Sum_probs=24.0

Q ss_pred             HHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 008022           74 ALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNK  129 (581)
Q Consensus        74 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (581)
                      .+...|+|++|..+.+...    .||...|.++-..  +.|--+++..-+.++...
T Consensus        48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL~~la~s   97 (115)
T 2uwj_G           48 SLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRRLAGLGGS   97 (115)
T ss_dssp             HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTC
T ss_pred             HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence            3445555555555443332    4555554444322  455555555555455444

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=82.15  E-value=13  Score=27.35  Aligned_cols=45  Identities=16%  Similarity=0.285  Sum_probs=21.9

Q ss_pred             HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008022          394 AMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEK  438 (581)
Q Consensus       394 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  438 (581)
                      ..+-++.+...+..|++......+.+|.+.+++.-|.++|+-++.
T Consensus        72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~  116 (152)
T 2y69_E           72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD  116 (152)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334444444444445555555555555555555555555554443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=82.06  E-value=16  Score=33.64  Aligned_cols=102  Identities=15%  Similarity=0.109  Sum_probs=67.5

Q ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCCh
Q 008022           21 MKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNV  100 (581)
Q Consensus        21 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  100 (581)
                      ..+.|.+-....|..-...+...|++++|.++-....+ |.-.++.+.+.+-..-...|+..-.+.+|..+.+.| ..+.
T Consensus       352 A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln~  429 (494)
T 1bpo_A          352 AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLNK  429 (494)
T ss_dssp             HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCCH
T ss_pred             HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccch
Confidence            33456666777788888888888888888887766554 555677777665554455566777778888877776 5555


Q ss_pred             hhHHHHHHHHHhcCChhHHHHHHH
Q 008022          101 FTYNILLKALCKNNRVDGAYKLLV  124 (581)
Q Consensus       101 ~~~~~l~~~~~~~~~~~~a~~~~~  124 (581)
                      ..-.-+++....+|+.+-..+.+.
T Consensus       430 ~ESlEl~r~vL~q~r~~llekWl~  453 (494)
T 1bpo_A          430 YESLELCRPVLQQGRKQLLEKWLK  453 (494)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhhHHhHHHHhccHHHHHHHHHh
Confidence            444455666666666554444433

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.72  E-value=9.2  Score=35.56  Aligned_cols=119  Identities=13%  Similarity=0.035  Sum_probs=80.3

Q ss_pred             hhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCcchHHH
Q 008022           11 IDGVQYLLQQMKVEGVS--CSEGVFISVINSYRRVGLAEQALKMFYRIREF--GLKPTVKIYNHILDALLAENRFSMINP   86 (581)
Q Consensus        11 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~   86 (581)
                      .++.........+....  .-..+...++..|.+.|+++.|.+.|.++...  +...-.+.+-.+++.+...+++..+..
T Consensus       110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~  189 (429)
T 4b4t_R          110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKE  189 (429)
T ss_dssp             HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            33444444545553222  23457788999999999999999999998853  444567788889999999999999999


Q ss_pred             HHHHHHhC-CCCCChhhHH----HHHHHHHhcCChhHHHHHHHHHhhC
Q 008022           87 IYSNMKRD-GMEPNVFTYN----ILLKALCKNNRVDGAYKLLVEMGNK  129 (581)
Q Consensus        87 ~~~~~~~~-~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~  129 (581)
                      .++++... .-.++....+    .-+..+...+++..|-+.|-+....
T Consensus       190 ~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          190 KLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence            99887643 1122222221    1222344678999998888776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	581
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 41/324 (12%), Positives = 87/324 (26%), Gaps = 19/324 (5%)

Query: 249 GRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTY 308
           G    A     ++ R+    N      L         +D +      +     P     Y
Sbjct: 13  GDFEAAERHCMQLWRQ-EPDNTGVLLLLSSIHFQCRRLDRSAH-FSTLAIKQNPLLAEAY 70

Query: 309 SALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAF 368
           S L       GN+          I +      +    +   +        A  +   +  
Sbjct: 71  SNL-------GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123

Query: 369 ENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKE 428
                        ++   G            +    + +     +      L  V   + 
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183

Query: 429 AFELVTEIEKCGIQLN---IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNI 485
              L     +  + L+   +  Y  + + +  A +   A     +  +  +   A+    
Sbjct: 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA-LSLSPNHAVVHGN 242

Query: 486 IIYAYCKQGKVNNAIQLLDRIRGGGEWNPDII-SYTSLLWGICNSGGMQEAFIYLQKMLN 544
           +   Y +QG ++ AI    R     E  P    +Y +L   +   G + EA       L 
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAI---ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299

Query: 545 EGICPNFATWNVLVRSLFSNLGHL 568
             +CP  A     + ++    G++
Sbjct: 300 --LCPTHADSLNNLANIKREQGNI 321

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	581
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.71
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.66
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.41
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.39
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.36
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.34
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.31
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.28
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.26
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.24
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.22
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.18
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.94
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.86
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.79
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.78
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.77
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.77
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.75
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.72
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.7
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.7
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.69
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.69
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.58
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.56
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.53
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.52
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.48
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.47
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.44
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.43
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.43
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.32
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.32
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.32
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.3
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.29
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.29
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.28
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.26
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.2
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.1
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.96
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.9
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.89
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.76
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.69
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.63
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.54
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	97.18
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.16
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.7
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.15
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.97
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.95
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.82
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.35
d1bpoa1	157	Clathrin heavy-chain linker domain {Rat (Rattus no	92.5
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	91.15
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	89.5

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-23  Score=195.31  Aligned_cols=382  Identities=15%  Similarity=0.087  Sum_probs=299.8

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCC
Q 008022          171 LINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGR  250 (581)
Q Consensus       171 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  250 (581)
                      +...+.+.|++++|++.++++.+.. +-++..+..+..++.+.|++++|...++++.+.. +.+..++..+...+...|+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence            4456677888888888888887763 2256677778888888888888888888888774 3356778888888888899


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 008022          251 THEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNR  330 (581)
Q Consensus       251 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  330 (581)
                      +++|+..+....+.... +..............+....+........... .................+....+...+..
T Consensus        83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             ccccccccccccccccc-cccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence            99999988888876433 44444445555555666666665555554443 23444455556666777888888888877


Q ss_pred             HHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCCh
Q 008022          331 MISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNI  410 (581)
Q Consensus       331 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  410 (581)
                      .....+ .+...+..+...+...+++++|...+++..... |.+...+..+...+...|++++|...++...... +.+.
T Consensus       161 ~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~  237 (388)
T d1w3ba_         161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA  237 (388)
T ss_dssp             HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred             hhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence            766532 256677778888899999999999999888764 5677788889999999999999999999987755 3466


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022          411 TTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY  490 (581)
Q Consensus       411 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  490 (581)
                      ..+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++...... +.+...+..++.++
T Consensus       238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  315 (388)
T d1w3ba_         238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence            677788889999999999999999998864 5567788889999999999999999999988874 66788889999999


Q ss_pred             HhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhccC
Q 008022          491 CKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLVRSLFSNLG  566 (581)
Q Consensus       491 ~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  566 (581)
                      ...|++++|++.++++.+   +.| +..++..++.+|...|++++|+..|+++++  +.|+ ...+..++.++.+.|+
T Consensus       316 ~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         316 REQGNIEEAVRLYRKALE---VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTT---SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999988   556 577889999999999999999999999987  4565 6678888888887664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-23  Score=195.13  Aligned_cols=376  Identities=15%  Similarity=0.115  Sum_probs=261.8

Q ss_pred             HHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHH
Q 008022          144 SICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETS  219 (581)
Q Consensus       144 ~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  219 (581)
                      .+.+.|++++|++.++++    |.+..++..+..++.+.|++++|...|++..+..+ -+..++..+..++...|++++|
T Consensus         8 ~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~~A   86 (388)
T d1w3ba_           8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcccccc
Confidence            334444444444444443    33444455555555555556666666665555421 2345555566666666666666


Q ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 008022          220 LGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEEN  299 (581)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  299 (581)
                      ...+....+.. +.+..............+....+............ ................+....+...+......
T Consensus        87 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T d1w3ba_          87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             ccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHhhcc
Confidence            66666665553 22223333333333334444444444443333322 23333444455555666666666666666554


Q ss_pred             CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHH
Q 008022          300 SCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFN  379 (581)
Q Consensus       300 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  379 (581)
                      . +.+...+..+...+...|+++.|...+++..+..+. +...+..+...+...|++++|...+++..... +.+...+.
T Consensus       165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  241 (388)
T d1w3ba_         165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG  241 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence            3 445667777778888888888888888887775432 55677788888888899999999988887764 56677788


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC
Q 008022          380 TFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG  459 (581)
Q Consensus       380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  459 (581)
                      .+...+...|++++|...|++..+.. +.+...+..+...+...|++++|.+.++...... +.+...+..+...+...|
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  319 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCC
Confidence            88888999999999999999988765 3456788888999999999999999999988764 667888888999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCC
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGG  531 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~  531 (581)
                      ++++|++.++++++.. +.+..++..++.+|...|++++|++.|+++.+   +.| +..+|..++.+|.+.||
T Consensus       320 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         320 NIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999998864 44678899999999999999999999999998   567 57789999999888775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.8e-15  Score=132.94  Aligned_cols=269  Identities=15%  Similarity=0.045  Sum_probs=174.3

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 008022          275 TLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNN  354 (581)
Q Consensus       275 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  354 (581)
                      .....+.+.|++++|+..|+++.+.. |.+...|..+..++...|+++.|...+.+..+..+. +...+..+...+...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence            34555667777777777777777653 445666777777777777777777777776665332 4556666666777777


Q ss_pred             ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008022          355 MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVT  434 (581)
Q Consensus       355 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  434 (581)
                      ++++|...++...... +..............                    ..+.......+..+...+.+.+|.+.+.
T Consensus       102 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         102 LQRQACEILRDWLRYT-PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             CHHHHHHHHHHHHHTS-TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhc-cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence            7777777777766542 111111100000000                    0000001111223334456777888888


Q ss_pred             HHHHcCC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 008022          435 EIEKCGI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWN  513 (581)
Q Consensus       435 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  513 (581)
                      ...+... .++...+..+...+...|++++|+..+++.+... +.+..+|..++.+|...|++++|++.++++.+   +.
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~  236 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE---LQ  236 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HC
T ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHH---Hh
Confidence            7765432 3356677788888889999999999999988764 44677888899999999999999999999887   45


Q ss_pred             C-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC------------HHhHHHHHHHHHhccCCCChHH
Q 008022          514 P-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN------------FATWNVLVRSLFSNLGHLGPVY  572 (581)
Q Consensus       514 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~a~~  572 (581)
                      | +..+|..++.+|.+.|++++|+..|+++++.  .|+            ...+..+..++...|+.+.+..
T Consensus       237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            6 5778888999999999999999999988762  222            1234555556666666655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.2e-14  Score=130.92  Aligned_cols=242  Identities=13%  Similarity=0.087  Sum_probs=164.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCC
Q 008022          310 ALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCG  389 (581)
Q Consensus       310 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  389 (581)
                      .....+.+.|++++|...|+++++..+. +..++..+..++...|++++|...+++..... |.+...+..+...+...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            3455566677777777777776665322 45566666666777777777777777666553 445566666666666777


Q ss_pred             ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 008022          390 RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLG  469 (581)
Q Consensus       390 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  469 (581)
                      ++++|.+.++......  |+.............                   ..+.......+..+...+.+.+|.+.+.
T Consensus       102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence            7777777666665543  222111000000000                   0000111112223345567788888988


Q ss_pred             HHHHCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 008022          470 KMLIEGT-KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGI  547 (581)
Q Consensus       470 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  547 (581)
                      +++.... .++..++..++..+...|++++|+..++++..   ..| +..+|..++.+|...|++++|++.|+++++.  
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--  235 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--  235 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc---cccccccchhhhhhcccccccchhHHHHHHHHHHH--
Confidence            8876532 34677888999999999999999999999987   456 6778999999999999999999999999884  


Q ss_pred             CCC-HHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          548 CPN-FATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       548 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      .|+ ...+..++.++...|++++|++.++++++
T Consensus       236 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         236 QPGYIRSRYNLGISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            454 66788999999999999999999998875

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.1e-11  Score=105.80  Aligned_cols=196  Identities=10%  Similarity=0.041  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHh
Q 008022          307 TYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNN-MFHQAHSLIEKMAFENCPPNTVTFNTFIKGL  385 (581)
Q Consensus       307 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  385 (581)
                      .++.+...+.+.+.+++|+.+++++++..+. +...|+....++...+ ++++|+..++...... |.+..+|..+...+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence            3444555555566666666666666665322 3445555555555544 3566666666655543 44555666666666


Q ss_pred             hcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC-----
Q 008022          386 CGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM-----  460 (581)
Q Consensus       386 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----  460 (581)
                      ...|++++|+..++.+.+.. +.+...|..+...+...|++++|++.++.+++.+ +.+...|+.+...+.+.+.     
T Consensus       123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhh
Confidence            66666666666666665543 2345555556666666666666666666665543 3344555555444444433     


Q ss_pred             -HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          461 -VVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       461 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                       +++|++.+.+++... +.+...|+.+...+.. ...+++.+.++.+.+
T Consensus       201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~  247 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLD  247 (315)
T ss_dssp             HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence             355555555555543 3344555555444333 234555555555544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-10  Score=103.07  Aligned_cols=217  Identities=12%  Similarity=0.028  Sum_probs=171.1

Q ss_pred             HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022          270 VVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKAG-NLLGASQIWNRMISNGCSPNVVAYTCMVK  348 (581)
Q Consensus       270 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  348 (581)
                      ...++.+...+.+.+.+++|+.++.++.+.. |.+...|+....++...| ++++|+..++...+..+. +..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence            3456677778888999999999999999875 567888888888888876 589999999999887543 6778999999


Q ss_pred             HHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---
Q 008022          349 VLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNR---  425 (581)
Q Consensus       349 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  425 (581)
                      ++...|++++|+..++++.... |.+...|..+..++...|++++|+..++.+.+.+ +.+...|+.+...+...+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccch
Confidence            9999999999999999999875 7788999999999999999999999999998876 3466678877777766554   


Q ss_pred             ---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHh
Q 008022          426 ---VKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKL-DAITFNIIIYAYCK  492 (581)
Q Consensus       426 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~  492 (581)
                         +++|++.+..+.+.. +.+...|..+...+.. ...+++.+.++...+....+ +...+..++..|..
T Consensus       199 ~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~  267 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  267 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence               578999999888864 5577777777665544 44677888888887653332 44555666665543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=5.1e-10  Score=101.77  Aligned_cols=301  Identities=13%  Similarity=-0.018  Sum_probs=179.3

Q ss_pred             HHHHhcCChhhHHHHHHHHHhCCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHH
Q 008022          278 HGLCSNGSMDEAVSVSYQMEENSCPPN----VTTYSALIDGFAKAGNLLGASQIWNRMISNGCS-PN----VVAYTCMVK  348 (581)
Q Consensus       278 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~  348 (581)
                      ..+...|++++|+.++++..+.....+    ...+..+..++...|++++|...+++....... ++    ...+..+..
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~   99 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE   99 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence            344555666666666655554321111    123444555566666666666666655432100 11    123344455


Q ss_pred             HHHccCChhHHHHHHHHHhhC----CCCC---ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCC----CCCChhhHHHHH
Q 008022          349 VLCQNNMFHQAHSLIEKMAFE----NCPP---NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYE----CLPNITTYNELL  417 (581)
Q Consensus       349 ~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~  417 (581)
                      .+...|++..+...+......    ..+.   ....+..+...+...|+++.+...+.......    .......+....
T Consensus       100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (366)
T d1hz4a_         100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  179 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            566667777776666654321    1111   12244455667778888888888887765422    112233445556


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc----CCcc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---cCHHHHHHHHH
Q 008022          418 DGLLRVNRVKEAFELVTEIEKC----GIQL--NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK---LDAITFNIIIY  488 (581)
Q Consensus       418 ~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~  488 (581)
                      ..+...++...+...+......    +..+  ....+..+...+...|++++|...+.+.......   .....+..++.
T Consensus       180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~  259 (366)
T d1hz4a_         180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  259 (366)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            6677788888888887765432    1111  1234555666778889999999998887765322   22345667788


Q ss_pred             HHHhcCCHHHHHHHHHHHhcC---CCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC----CCHHhHHH
Q 008022          489 AYCKQGKVNNAIQLLDRIRGG---GEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE----GIC----PNFATWNV  556 (581)
Q Consensus       489 ~~~~~g~~~~A~~~~~~~~~~---~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~----~~~~~~~~  556 (581)
                      ++...|++++|...++++...   .+..| ...++..++.+|...|++++|.+.++++++.    |..    .....+..
T Consensus       260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~  339 (366)
T d1hz4a_         260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ  339 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Confidence            899999999999999887531   22334 3457788889999999999999999887542    221    12234555


Q ss_pred             HHHHHHhccCCCChHHH-HHHHh
Q 008022          557 LVRSLFSNLGHLGPVYI-LDDIM  578 (581)
Q Consensus       557 l~~~~~~~g~~~~a~~~-~~~~~  578 (581)
                      ++..+...++.+++... .++++
T Consensus       340 ~~~~l~~~~~l~e~e~~~a~~ll  362 (366)
T d1hz4a_         340 QLRQLIQLNTLPELEQHRAQRIL  362 (366)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHHHHH
Confidence            66677777888877643 33443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.34  E-value=3.1e-10  Score=100.15  Aligned_cols=189  Identities=12%  Similarity=0.041  Sum_probs=148.3

Q ss_pred             ChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 008022          355 MFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVT  434 (581)
Q Consensus       355 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  434 (581)
                      ..++|..++++......+.+...+...+......|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45778888888886655666777888888888999999999999998876533334467888888888999999999999


Q ss_pred             HHHHcCCcccHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 008022          435 EIEKCGIQLNIVTYNTILHG-VCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWN  513 (581)
Q Consensus       435 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  513 (581)
                      .+.+.+ +.+...|...... +...|+.+.|..+|+.++... +.+...|..++..+...|+++.|+.+|+++....+.+
T Consensus       159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            988764 4445555444433 344689999999999999873 5578889999999999999999999999998866666


Q ss_pred             CC--HHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          514 PD--IISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       514 p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      |+  ...|...+..-...|+.+.+..+++++.+.
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            63  347788887778889999999999988663

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=6.5e-10  Score=101.04  Aligned_cols=272  Identities=12%  Similarity=-0.031  Sum_probs=197.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHccCChhHHHHHHHHHhhCCC--C---CChhhH
Q 008022          308 YSALIDGFAKAGNLLGASQIWNRMISNGCSPN----VVAYTCMVKVLCQNNMFHQAHSLIEKMAFENC--P---PNTVTF  378 (581)
Q Consensus       308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~  378 (581)
                      .......+...|++++|..++++.....+..+    ...+..+..++...|++++|...+++......  +   .....+
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   94 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   94 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            34445667889999999999999988643322    23566677889999999999999998765311  1   112345


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHhh----CCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CcccHHH
Q 008022          379 NTFIKGLCGCGRVDWAMKLLDQMKQ----YECLPN---ITTYNELLDGLLRVNRVKEAFELVTEIEKCG----IQLNIVT  447 (581)
Q Consensus       379 ~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~  447 (581)
                      ..+...+...|++..+...+.....    ......   ...+..+...+...|+++.+...+.......    .......
T Consensus        95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  174 (366)
T d1hz4a_          95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  174 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence            5667788899999999999887643    111111   1245566778889999999999999887542    2233455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC--CHHhH
Q 008022          448 YNTILHGVCRAGMVVEAFQLLGKMLIE--GTKL----DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP--DIISY  519 (581)
Q Consensus       448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~  519 (581)
                      +......+...+++.++...+.+....  ....    ....+...+..+...|++++|...+++........+  ....+
T Consensus       175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  254 (366)
T d1hz4a_         175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  254 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence            666677788899999999888877653  1111    123456677888999999999999999877333222  23456


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHH----cCCCCC-HHhHHHHHHHHHhccCCCChHHHHHHHhh
Q 008022          520 TSLLWGICNSGGMQEAFIYLQKMLN----EGICPN-FATWNVLVRSLFSNLGHLGPVYILDDIMA  579 (581)
Q Consensus       520 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  579 (581)
                      ..++.++...|++++|...+++++.    .+..|+ ...+..+..++...|++++|++.+++.++
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6788999999999999999998853    234444 34677788899999999999999998764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.1e-09  Score=96.68  Aligned_cols=216  Identities=12%  Similarity=0.110  Sum_probs=114.4

Q ss_pred             hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 008022           11 IDGVQYLLQQMKVEGVSCSEGVFISVINSYRRV--------------GLAEQALKMFYRIREFGLKPTVKIYNHILDALL   76 (581)
Q Consensus        11 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~   76 (581)
                      .+.+..+|++++... +.++.+|...+..+...              +..++|..+|++.....++.+...|...+....
T Consensus        32 ~~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~  110 (308)
T d2onda1          32 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            344666677766653 33666666555544322              234566666766665444455556666666666


Q ss_pred             hcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHH-HHccCCHHHHH
Q 008022           77 AENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSS-ICKLGQVEEAR  155 (581)
Q Consensus        77 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~  155 (581)
                      ..|+++.|..+|+.+.+........+|...+..+.+.|+++.|.++|+...+.+. .+...+...... +...|+.+.|.
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~  189 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHH
Confidence            6777777777777766553222233566666666666777777777776665522 133333333222 22345555555


Q ss_pred             HHHHHh----CCCcchHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC--cccHHHHHHHHHccCChhHHHHHHHHHHH
Q 008022          156 ELAMRF----GSGVSVYNALINGLCKEHKIEEAFWLLCEMVDRG-IDPN--VITYSTIISSLCDVGNVETSLGILGQMFV  228 (581)
Q Consensus       156 ~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  228 (581)
                      .+++..    |.+...|...+..+...|+.+.|..+|++..... ..|+  ...|...+..-...|+.+.+..+++++.+
T Consensus       190 ~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            555554    4455555555555555555555555555554432 1111  12344444444444555555555544433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=6.4e-11  Score=106.28  Aligned_cols=231  Identities=8%  Similarity=-0.010  Sum_probs=160.7

Q ss_pred             cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC--ChhHHHHHHHHHhhCCCCCChhhHH-HHHHHhhcCCChHHH
Q 008022          318 AGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQNN--MFHQAHSLIEKMAFENCPPNTVTFN-TFIKGLCGCGRVDWA  394 (581)
Q Consensus       318 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a  394 (581)
                      .|.+++|+..++.+....+. +...+..+..++...+  ++++|...++++.... +.+...+. .....+...+.++.|
T Consensus        86 ~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A  163 (334)
T d1dcea1          86 AALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEE  163 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHH
Confidence            34467788888887765432 5556666666655554  4788888888887764 44455543 444667778888889


Q ss_pred             HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 008022          395 MKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIE  474 (581)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  474 (581)
                      +..++.+.+.+ +.+...|..+...+...|++++|...+....+.  .|+.   ..+...+...+..+++...+.+....
T Consensus       164 l~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~  237 (334)
T d1dcea1         164 LAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG  237 (334)
T ss_dssp             HHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             HHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh
Confidence            88888887766 346777888888888888888776666554432  1211   12233345566777788888888776


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-
Q 008022          475 GTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFA-  552 (581)
Q Consensus       475 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-  552 (581)
                      . +++...+..++..+...|++++|...+.+...   ..| +..++..++.++...|++++|+.+++++++  +.|+.. 
T Consensus       238 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~  311 (334)
T d1dcea1         238 R-AEPLFRCELSVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA  311 (334)
T ss_dssp             C-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHH
T ss_pred             C-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHH
Confidence            4 44555666777788888999999999998887   456 567888899999999999999999999988  467644 


Q ss_pred             hHHHHHHHHH
Q 008022          553 TWNVLVRSLF  562 (581)
Q Consensus       553 ~~~~l~~~~~  562 (581)
                      .|..+...+.
T Consensus       312 y~~~L~~~~~  321 (334)
T d1dcea1         312 YLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            4444544443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=3.5e-11  Score=108.02  Aligned_cols=264  Identities=8%  Similarity=-0.035  Sum_probs=176.5

Q ss_pred             CHHHHHHHHHHHHhCCCCCCH-HhHHHHHHH----------HHhcCChhhHHHHHHHHHhCCCCCcHHhHHHHHHHHHhc
Q 008022          250 RTHEASDLWNRMIREGFLPNV-VAYSTLIHG----------LCSNGSMDEAVSVSYQMEENSCPPNVTTYSALIDGFAKA  318 (581)
Q Consensus       250 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~----------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  318 (581)
                      ..++|+++++.+.+..  |+. ..|+..-..          +...|.+++|+.+++...+.. |.+...|..+..++...
T Consensus        44 ~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~  120 (334)
T d1dcea1          44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL  120 (334)
T ss_dssp             CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHh
Confidence            3456666666666542  332 223222211          223344677888888877653 45667777776666665


Q ss_pred             C--CHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHH
Q 008022          319 G--NLLGASQIWNRMISNGCSPNVVAYT-CMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAM  395 (581)
Q Consensus       319 ~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  395 (581)
                      +  +++++...++++....+. +...+. .....+...+.++.|+..++.+...+ |.+...|..+..++...|++++|.
T Consensus       121 ~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~  198 (334)
T d1dcea1         121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG  198 (334)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHH
Confidence            5  478888888888776432 344443 34466677888888988888888775 667788888888888888887776


Q ss_pred             HHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 008022          396 KLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEG  475 (581)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  475 (581)
                      ..++......  |+.   ......+...+..+++...+....... +++...+..+...+...|+.++|...+.+....+
T Consensus       199 ~~~~~~~~~~--~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  272 (334)
T d1dcea1         199 PQGRLPENVL--LKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN  272 (334)
T ss_dssp             SCCSSCHHHH--HHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhHHhH--HHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            5554443321  111   122334455677777888888777653 4455556666777778889999999998888754


Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHc
Q 008022          476 TKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICN  528 (581)
Q Consensus       476 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~  528 (581)
                       +.+..++..++.+|...|++++|++.++++.+   +.| +...|..+...+.-
T Consensus       273 -p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~---ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         273 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKA---VDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             -HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCcccHHHHHHHHHHHhH
Confidence             34667788899999999999999999999998   678 45566666655543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=3.9e-10  Score=97.06  Aligned_cols=198  Identities=10%  Similarity=-0.105  Sum_probs=110.2

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 008022          342 AYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLL  421 (581)
Q Consensus       342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  421 (581)
                      ++..+..+|.+.|++++|...|++..... |.++.++..+..++...|++++|++.|+++.+.. +.+...+..+..++.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence            44455566666777777777777766654 5566677777777777777777777777776654 224455666667777


Q ss_pred             hcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC----CHH
Q 008022          422 RVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG----KVN  497 (581)
Q Consensus       422 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~  497 (581)
                      ..|++++|.+.++...+.. +.+......+...+.+.+..+.+..+........  ++...+. ++..+....    ..+
T Consensus       117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~  192 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME  192 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence            7777777777777776653 3334433334444445555444444444444432  1111111 112221111    122


Q ss_pred             HHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 008022          498 NAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN  550 (581)
Q Consensus       498 ~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  550 (581)
                      .+...+.....   ..| ...+|..++..|...|++++|.+.|++++..  .|+
T Consensus       193 ~~~~~~~~~~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~  241 (259)
T d1xnfa_         193 RLKADATDNTS---LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH  241 (259)
T ss_dssp             HHHHHCCSHHH---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred             HHHHHHHHhhh---cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCC
Confidence            22222222111   122 2345666777788888888888888888763  454

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=3.7e-10  Score=97.17  Aligned_cols=216  Identities=10%  Similarity=-0.093  Sum_probs=151.3

Q ss_pred             hhHHHHHHHHHhhCCCCC---ChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 008022          356 FHQAHSLIEKMAFENCPP---NTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFEL  432 (581)
Q Consensus       356 ~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  432 (581)
                      .+.++..+++........   ...++..+..+|.+.|++++|+..|++..+.. +.+..+|..+..++...|++++|++.
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence            455556666665542111   23467777889999999999999999998865 44677899999999999999999999


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 008022          433 VTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEW  512 (581)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  512 (581)
                      |+++.+.. +.+..++..+..++...|++++|.+.+++.++.. +.+......+...+.+.+..+.+..+.......   
T Consensus        94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  168 (259)
T d1xnfa_          94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---  168 (259)
T ss_dssp             HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---
T ss_pred             hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---
Confidence            99999874 4567788889999999999999999999999875 345555555666667777766666666666652   


Q ss_pred             CCCHHhHHHHHHHHHccC----CHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhccCCCChHHHHHHHhhc
Q 008022          513 NPDIISYTSLLWGICNSG----GMQEAFIYLQKMLNEGICPN-FATWNVLVRSLFSNLGHLGPVYILDDIMAN  580 (581)
Q Consensus       513 ~p~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  580 (581)
                      .++...+. ++..+....    ..+.+...+.....  ..|+ ..++..++..+...|++++|++.+++.++.
T Consensus       169 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         169 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            22222222 222222222    22333333322222  1233 345667888999999999999999998864

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=5.8e-08  Score=77.95  Aligned_cols=140  Identities=11%  Similarity=-0.044  Sum_probs=85.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHH
Q 008022          418 DGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVN  497 (581)
Q Consensus       418 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  497 (581)
                      ..+...|++++|++.|.++    .+|+..++..+..++...|++++|++.|++.++.+ +.+...|..++.+|.+.|+++
T Consensus        13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence            3445567777777666543    24556666667777777777777777777777654 445666777777777777777


Q ss_pred             HHHHHHHHHhcCCCCCC--------------CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 008022          498 NAIQLLDRIRGGGEWNP--------------DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATWNVLVRSLF  562 (581)
Q Consensus       498 ~A~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  562 (581)
                      +|++.|+++.....-.+              ...++..++.++...|++++|.+.++++++....|........+..+.
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~  166 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW  166 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence            77777777654211111              123455667777777777777777777776433333333443343333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.4e-08  Score=72.77  Aligned_cols=96  Identities=15%  Similarity=0.042  Sum_probs=68.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHcc
Q 008022          451 ILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNS  529 (581)
Q Consensus       451 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~  529 (581)
                      -...+...|++++|+.+|.++++.. +.+...|..++.+|...|++++|+..+.++.+   +.| ++..|..++.++...
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD---LKPDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHH---hccchhhHHHHHHHHHHHc
Confidence            3455667777777777777777764 45666777777777777777777777777776   345 566777777777777


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHH
Q 008022          530 GGMQEAFIYLQKMLNEGICPNFA  552 (581)
Q Consensus       530 g~~~~A~~~~~~~~~~~~~~~~~  552 (581)
                      |++++|+..|++.++  ..|+..
T Consensus        85 ~~~~~A~~~~~~a~~--~~p~~~  105 (117)
T d1elwa_          85 NRFEEAKRTYEEGLK--HEANNP  105 (117)
T ss_dssp             TCHHHHHHHHHHHHT--TCTTCH
T ss_pred             cCHHHHHHHHHHHHH--hCCCCH
Confidence            777777777777776  345433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=8.5e-08  Score=69.75  Aligned_cols=104  Identities=14%  Similarity=0.007  Sum_probs=87.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 008022          415 ELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQG  494 (581)
Q Consensus       415 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  494 (581)
                      .-...+...|++++|+..|+++++.. |.+...|..+..++...|++++|+..+.+++..+ +.+...|..++.++...|
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence            34567788999999999999998874 6678889999999999999999999999999876 568888999999999999


Q ss_pred             CHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          495 KVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       495 ~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      ++++|+..++++.+   ..| ++..+..+.
T Consensus        86 ~~~~A~~~~~~a~~---~~p~~~~~~~~l~  112 (117)
T d1elwa_          86 RFEEAKRTYEEGLK---HEANNPQLKEGLQ  112 (117)
T ss_dssp             CHHHHHHHHHHHHT---TCTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence            99999999999998   556 444444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=7.9e-08  Score=83.49  Aligned_cols=167  Identities=12%  Similarity=-0.045  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHhhC----CCC-CChhhHHHHHHHhhcCCChHHHHHHHHHHhhC----CCC-CChh
Q 008022          342 AYTCMVKVLCQNNMFHQAHSLIEKMAFE----NCP-PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQY----ECL-PNIT  411 (581)
Q Consensus       342 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~  411 (581)
                      .|......|...+++++|...|.+....    +.+ ....+|..+..+|.+.|++++|.+.++.....    +.. ....
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            3444455555555555555555554331    100 11234455555555555555555555544321    100 0012


Q ss_pred             hHHHHHHHHHh-cCCHHHHHHHHHHHHHc----CCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-----H
Q 008022          412 TYNELLDGLLR-VNRVKEAFELVTEIEKC----GIQL-NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLD-----A  480 (581)
Q Consensus       412 ~~~~l~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~  480 (581)
                      .+..+...|.. .|++++|++.+++..+.    +.++ ...++..+...+...|++++|.+.++++........     .
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  198 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence            23333333322 35555555555544321    1111 122344445555555555555555555554321111     0


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          481 -ITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       481 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                       ..+...+.++...|+++.|.+.+++..+
T Consensus       199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~  227 (290)
T d1qqea_         199 KDYFLKKGLCQLAATDAVAAARTLQEGQS  227 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence             1122333344445555555555555555

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=6.2e-08  Score=79.10  Aligned_cols=99  Identities=14%  Similarity=0.009  Sum_probs=83.5

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 008022          408 PNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIII  487 (581)
Q Consensus       408 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  487 (581)
                      |+...+......+.+.|++++|+..|++.++.. |.+...|..+..+|.+.|++++|+..+++++... +-+..+|..++
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            667777788888889999999999999888774 6678888888889999999999999999988764 34677888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHhc
Q 008022          488 YAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       488 ~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      .+|...|++++|+..|+++.+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999998876

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.3e-07  Score=73.35  Aligned_cols=91  Identities=10%  Similarity=0.033  Sum_probs=61.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008022          416 LLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK  495 (581)
Q Consensus       416 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  495 (581)
                      ....|.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|...|+++++.. +.+..+|..++.++...|+
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~   93 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   93 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence            3445666777777777777776653 4456666667777777777777777777776654 3455667777777777777


Q ss_pred             HHHHHHHHHHHhc
Q 008022          496 VNNAIQLLDRIRG  508 (581)
Q Consensus       496 ~~~A~~~~~~~~~  508 (581)
                      +++|.+.++++..
T Consensus        94 ~~eA~~~~~~a~~  106 (159)
T d1a17a_          94 FRAALRDYETVVK  106 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777777766

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.1e-07  Score=73.76  Aligned_cols=104  Identities=13%  Similarity=0.040  Sum_probs=89.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHH
Q 008022          449 NTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGIC  527 (581)
Q Consensus       449 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~  527 (581)
                      ......|.+.|++++|+..|++++..+ +.+...|..++.+|...|++++|++.|+++.+   +.| +..+|..++.++.
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~---~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHH---HcccchHHHHHHHHHHH
Confidence            344667889999999999999999986 56888999999999999999999999999998   567 6789999999999


Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHH
Q 008022          528 NSGGMQEAFIYLQKMLNEGICPN-FATWNVLV  558 (581)
Q Consensus       528 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~  558 (581)
                      ..|++++|...++++...  .|+ ...+..+.
T Consensus        90 ~~g~~~eA~~~~~~a~~~--~p~~~~~~~~l~  119 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKV--KPHDKDAKMKYQ  119 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHH--STTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHc--CCCCHHHHHHHH
Confidence            999999999999999884  455 44443433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=2.6e-07  Score=74.06  Aligned_cols=120  Identities=10%  Similarity=-0.033  Sum_probs=79.3

Q ss_pred             HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022            4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM   83 (581)
Q Consensus         4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (581)
                      .+...|+++.|++.|..+    .++++.++..++..|...|++++|++.|++.++.++ .++..|..+..++.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHHH
Confidence            345677777777777653    234666777777777777777777777777777654 556677777777777777777


Q ss_pred             HHHHHHHHHhCCCCCC----------------hhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 008022           84 INPIYSNMKRDGMEPN----------------VFTYNILLKALCKNNRVDGAYKLLVEMGNK  129 (581)
Q Consensus        84 a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (581)
                      |...|++..... +.+                ..++..+..++.+.|++++|.+.++...+.
T Consensus        89 A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          89 AIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            777777765431 111                123444555666677777777776666655

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.72  E-value=2.1e-05  Score=66.81  Aligned_cols=224  Identities=11%  Similarity=-0.072  Sum_probs=120.7

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 008022          306 TTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ----NNMFHQAHSLIEKMAFENCPPNTVTFNTF  381 (581)
Q Consensus       306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  381 (581)
                      ..+..+...+...+++++|++.|++..+.|   +...+..|...|..    ..++..|...++.....+   ++.....+
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l   76 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL   76 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence            334444444445555555555555554443   33333344444433    335555555555555443   12222222


Q ss_pred             HHHhh----cCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Q 008022          382 IKGLC----GCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLL----RVNRVKEAFELVTEIEKCGIQLNIVTYNTILH  453 (581)
Q Consensus       382 ~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  453 (581)
                      ...+.    ...+.+.|...++...+.+..   .....+...+.    .......+...+......   .+...+..+..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~  150 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGS  150 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhh
Confidence            22221    234556666666666554421   11222222222    133455566666665553   34455555666


Q ss_pred             HHHh----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHH
Q 008022          454 GVCR----AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK----QGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWG  525 (581)
Q Consensus       454 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~  525 (581)
                      .+..    ..+...+...++...+.|   +..+...++..|..    ..++++|+.+|++..+.    -++..+..|+..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~----g~~~a~~~LG~~  223 (265)
T d1ouva_         151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL----ENGGGCFNLGAM  223 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred             hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcc----cCHHHHHHHHHH
Confidence            6554    345667777777776644   56666667666665    55788888888888772    245566667777


Q ss_pred             HHc----cCCHHHHHHHHHHHHHcCCC
Q 008022          526 ICN----SGGMQEAFIYLQKMLNEGIC  548 (581)
Q Consensus       526 ~~~----~g~~~~A~~~~~~~~~~~~~  548 (581)
                      |..    ..+.++|.++|+++.+.|..
T Consensus       224 y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         224 QYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            764    34677888888888776643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=4.7e-08  Score=79.86  Aligned_cols=100  Identities=9%  Similarity=-0.071  Sum_probs=84.8

Q ss_pred             CChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHH
Q 008022          373 PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTIL  452 (581)
Q Consensus       373 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  452 (581)
                      |+...+......+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+.+++.. +-+..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence            566777788888999999999999999887765 4567788889999999999999999999998753 44677888899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 008022          453 HGVCRAGMVVEAFQLLGKMLIE  474 (581)
Q Consensus       453 ~~~~~~~~~~~a~~~~~~~~~~  474 (581)
                      .+|...|++++|...|++++..
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999988764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=4e-07  Score=78.89  Aligned_cols=59  Identities=12%  Similarity=-0.013  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCChhHHHHHHHHH
Q 008022          308 YSALIDGFAKAGNLLGASQIWNRMISN----GCSP-NVVAYTCMVKVLCQNNMFHQAHSLIEKM  366 (581)
Q Consensus       308 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~  366 (581)
                      |......|...+++++|.+.|.++.+.    +-.+ -..+|..+..+|.+.|++++|...+++.
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a  103 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence            444444444455555555555444331    0000 1123444444444555555555554443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.69  E-value=9.1e-08  Score=68.87  Aligned_cols=87  Identities=16%  Similarity=0.085  Sum_probs=52.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccC
Q 008022          452 LHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSG  530 (581)
Q Consensus       452 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g  530 (581)
                      ...+.+.|++++|+..+++++... +.+..+|..++.++.+.|++++|+..++++.+   +.| +..+|..++.+|...|
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHHCC
Confidence            444556666666666666666553 33555666666666666666666666666665   344 4556666666666666


Q ss_pred             CHHHHHHHHHHH
Q 008022          531 GMQEAFIYLQKM  542 (581)
Q Consensus       531 ~~~~A~~~~~~~  542 (581)
                      ++++|++.+++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            666666666654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=7.5e-08  Score=70.11  Aligned_cols=100  Identities=12%  Similarity=0.091  Sum_probs=72.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCC---HHhHHHH
Q 008022          449 NTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK---VNNAIQLLDRIRGGGEWNPD---IISYTSL  522 (581)
Q Consensus       449 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~p~---~~~~~~l  522 (581)
                      ..++..+...+++++|.+.|++.+..+ +.+..++..++.++.+.++   +++|+++++++..   ..|+   ..+|..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~---~~~~~~~~~~~~~L   78 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP---KGSKEEQRDYVFYL   78 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---TSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh---ccCCchHHHHHHHH
Confidence            346667777788888888888888775 5577788888888876544   4568888888776   2332   2367778


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH
Q 008022          523 LWGICNSGGMQEAFIYLQKMLNEGICPNFATW  554 (581)
Q Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  554 (581)
                      +.+|.+.|++++|+++|+++++  +.|+..-.
T Consensus        79 g~~y~~~g~~~~A~~~~~~aL~--~~P~~~~A  108 (122)
T d1nzna_          79 AVGNYRLKEYEKALKYVRGLLQ--TEPQNNQA  108 (122)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHH--hCcCCHHH
Confidence            8888888888888888888887  45665443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.58  E-value=0.00013  Score=61.63  Aligned_cols=222  Identities=9%  Similarity=-0.071  Sum_probs=160.1

Q ss_pred             ChhhHHHHHHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhc----CCChHHHHHHHHHHhhCCCCCChhhHH
Q 008022          339 NVVAYTCMVKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCG----CGRVDWAMKLLDQMKQYECLPNITTYN  414 (581)
Q Consensus       339 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  414 (581)
                      |+..+..+...+...+++++|+.+|++..+.|   +...+..|...|..    ..++..|...+......+   +.....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            34566677778888999999999999998875   55566667777765    568999999999988765   333344


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 008022          415 ELLDGLLR----VNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVC----RAGMVVEAFQLLGKMLIEGTKLDAITFNII  486 (581)
Q Consensus       415 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  486 (581)
                      .+...+..    ..+.+.|...++...+.|..   .....+...+.    .......+...+......   .+...+..+
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L  148 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTIL  148 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhh
Confidence            44444432    56888999999998887632   22222333333    245677888888887764   466777888


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 008022          487 IYAYCK----QGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICN----SGGMQEAFIYLQKMLNEGICPNFATWNVLV  558 (581)
Q Consensus       487 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  558 (581)
                      +..|..    ..+...+..+++...+    ..+..+...++..|..    ..++++|..+|++..+.|   ++..+..+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~a~~----~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG  221 (265)
T d1ouva_         149 GSLYDAGRGTPKDLKKALASYDKACD----LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG  221 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             hhhhccCCCcccccccchhhhhcccc----ccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence            888875    5578889999998887    2467777778777765    568999999999998875   455666777


Q ss_pred             HHHHh----ccCCCChHHHHHHHhh
Q 008022          559 RSLFS----NLGHLGPVYILDDIMA  579 (581)
Q Consensus       559 ~~~~~----~g~~~~a~~~~~~~~~  579 (581)
                      ..+..    ..+.++|.+++++..+
T Consensus       222 ~~y~~G~g~~~n~~~A~~~~~kAa~  246 (265)
T d1ouva_         222 AMQYNGEGVTRNEKQAIENFKKGCK  246 (265)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHH
Confidence            77765    2378899999988754

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.9e-07  Score=66.94  Aligned_cols=99  Identities=13%  Similarity=0.151  Sum_probs=78.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCcC-HHHHHHHHHH
Q 008022          414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGM---VVEAFQLLGKMLIEGTKLD-AITFNIIIYA  489 (581)
Q Consensus       414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~  489 (581)
                      ..++..+...+++++|.+.|+.....+ +.+..++..+..++.+.++   +++|++++++++..+..|+ ..++..++.+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            456777888889999999999998875 6677888888888876554   4569999999887653333 3478889999


Q ss_pred             HHhcCCHHHHHHHHHHHhcCCCCCCCH
Q 008022          490 YCKQGKVNNAIQLLDRIRGGGEWNPDI  516 (581)
Q Consensus       490 ~~~~g~~~~A~~~~~~~~~~~~~~p~~  516 (581)
                      |.+.|++++|++.|+++.+   +.|+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~---~~P~~  105 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQ---TEPQN  105 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHH---HCTTC
T ss_pred             HHHHhhhHHHHHHHHHHHH---hCcCC
Confidence            9999999999999999988   56753

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.53  E-value=5.8e-07  Score=64.51  Aligned_cols=92  Identities=11%  Similarity=-0.027  Sum_probs=76.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 008022          414 NELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ  493 (581)
Q Consensus       414 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  493 (581)
                      ..+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|+..++++++.. +.+..++..++.+|...
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence            345667788899999999999988764 4568888888889999999999999999988875 55788888899999999


Q ss_pred             CCHHHHHHHHHHHh
Q 008022          494 GKVNNAIQLLDRIR  507 (581)
Q Consensus       494 g~~~~A~~~~~~~~  507 (581)
                      |++++|++.+++..
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999888753

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=8.4e-07  Score=65.50  Aligned_cols=101  Identities=11%  Similarity=0.064  Sum_probs=72.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-C-------HHhH
Q 008022          448 YNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-D-------IISY  519 (581)
Q Consensus       448 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~-------~~~~  519 (581)
                      +..+...+.+.|++++|++.|.+.++.+ +.+..++..++.+|.+.|++++|++.++++.+   +.| +       ..+|
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE---VGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHH---hCcccHHHHHHHHHHH
Confidence            4456677788888888888888888775 45677788888888888888888888888776   233 1       2355


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHhH
Q 008022          520 TSLLWGICNSGGMQEAFIYLQKMLNEGICPNFATW  554 (581)
Q Consensus       520 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  554 (581)
                      ..++..+...+++++|+..|++.+..  .|+....
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~  115 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVL  115 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence            66677777788888888888887763  4555444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=3.6e-06  Score=65.67  Aligned_cols=61  Identities=8%  Similarity=-0.120  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          447 TYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       447 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +|+.+..+|.+.|++++|+..+++.+..+ +.+..++..++.+|...|++++|+..|+++.+
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            44555666666677777777776666654 33566666666677777777777777776666

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2e-06  Score=67.14  Aligned_cols=78  Identities=14%  Similarity=-0.008  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHhHHHHH
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN-FATWNVLV  558 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~  558 (581)
                      .+|+.++.+|.+.|++++|+..++++..   +.| ++.+|..++.+|...|++++|+..|+++++.  .|+ ......+.
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~---~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~  137 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALE---LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLA  137 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhh---ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            3577789999999999999999999998   567 7889999999999999999999999999884  564 45554454


Q ss_pred             HHHHh
Q 008022          559 RSLFS  563 (581)
Q Consensus       559 ~~~~~  563 (581)
                      .+..+
T Consensus       138 ~~~~~  142 (170)
T d1p5qa1         138 VCQQR  142 (170)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.44  E-value=0.00036  Score=60.03  Aligned_cols=210  Identities=8%  Similarity=0.009  Sum_probs=96.6

Q ss_pred             HhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 008022            4 KLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSM   83 (581)
Q Consensus         4 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (581)
                      .|.+.|.++.|..+|..+.         -|..++..+.+.+++..|.+.+.+.      .+..+|..+...+.+......
T Consensus        23 ~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~l   87 (336)
T d1b89a_          23 RCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL   87 (336)
T ss_dssp             ------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHHH
Confidence            3445555555555554222         2334455555566666655554433      344556666655555544332


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHhCC
Q 008022           84 INPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRFGS  163 (581)
Q Consensus        84 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  163 (581)
                      +     .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|++.+ .++..+.+.....
T Consensus        88 a-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~  160 (336)
T d1b89a_          88 A-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLELFWS  160 (336)
T ss_dssp             H-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHST
T ss_pred             H-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHHHHhccc
Confidence            2     1112222334444445556666666666666666655432 1224444555555555543 3333333332210


Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHH
Q 008022          164 GVSVYNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLK  243 (581)
Q Consensus       164 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  243 (581)
                                    .=+.+.+..+.   .      ....|.-++..|.+.|.++.|..++-   ++  +++.......+.
T Consensus       161 --------------~y~~~k~~~~c---~------~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e  212 (336)
T d1b89a_         161 --------------RVNIPKVLRAA---E------QAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKD  212 (336)
T ss_dssp             --------------TSCHHHHHHHH---H------TTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHH
T ss_pred             --------------cCCHHHHHHHH---H------HcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHH
Confidence                          00111111111   1      11224455666667777776655432   22  444555555666


Q ss_pred             HHHccCCHHHHHHHHHHHHh
Q 008022          244 GYLLGGRTHEASDLWNRMIR  263 (581)
Q Consensus       244 ~~~~~~~~~~a~~~~~~~~~  263 (581)
                      .+.+..+.+...++.....+
T Consensus       213 ~~~k~~N~e~~~~~i~~yL~  232 (336)
T d1b89a_         213 IITKVANVELYYRAIQFYLE  232 (336)
T ss_dssp             HHHHCSSTHHHHHHHHHHHH
T ss_pred             HHHccCChHHHHHHHHHHHH
Confidence            66666666665555555444

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.43  E-value=0.00038  Score=59.83  Aligned_cols=217  Identities=7%  Similarity=-0.043  Sum_probs=114.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHH
Q 008022           28 CSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILL  107 (581)
Q Consensus        28 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  107 (581)
                      |+..-...++..|.+.|.++.|..+|..+..         |..++..+.+.++++.|.+++...      .+..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence            4666666777888888888888888876543         567777888888888887776543      2456777777


Q ss_pred             HHHHhcCChhHHHHHHHHHhhCCCCCCcchHHHHHHHHHccCCHHHHHHHHHHh----CCCcchHHHHHHHHHhcCChhH
Q 008022          108 KALCKNNRVDGAYKLLVEMGNKGCAPDAVSYTTIVSSICKLGQVEEARELAMRF----GSGVSVYNALINGLCKEHKIEE  183 (581)
Q Consensus       108 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~  183 (581)
                      ..+.+......+     .+.......++.....++..|-..|.+++...+++..    +.+...++.++..|++.+. ++
T Consensus        77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~k  150 (336)
T d1b89a_          77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QK  150 (336)
T ss_dssp             HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HH
T ss_pred             HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HH
Confidence            777776665443     2223333345556667778888888888888877765    4455567777777766532 23


Q ss_pred             HHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHh
Q 008022          184 AFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQMFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIR  263 (581)
Q Consensus       184 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  263 (581)
                      ..+   .+...+   +......++..|.+.+-++++                      +..|.+.|.++.|..+.   .+
T Consensus       151 l~e---~l~~~s---~~y~~~k~~~~c~~~~l~~el----------------------v~Ly~~~~~~~~A~~~~---i~  199 (336)
T d1b89a_         151 MRE---HLELFW---SRVNIPKVLRAAEQAHLWAEL----------------------VFLYDKYEEYDNAIITM---MN  199 (336)
T ss_dssp             HHH---HHHHHS---TTSCHHHHHHHHHTTTCHHHH----------------------HHHHHHTTCHHHHHHHH---HH
T ss_pred             HHH---HHHhcc---ccCCHHHHHHHHHHcCChHHH----------------------HHHHHhcCCHHHHHHHH---HH
Confidence            222   222211   112223344555554444444                      34444555566554443   22


Q ss_pred             CCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 008022          264 EGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEE  298 (581)
Q Consensus       264 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  298 (581)
                      .  .++..-....+..+.+..+.+...++.....+
T Consensus       200 ~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~  232 (336)
T d1b89a_         200 H--PTDAWKEGQFKDIITKVANVELYYRAIQFYLE  232 (336)
T ss_dssp             S--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred             c--chhhhhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence            2  22333334445556666666555555444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.43  E-value=5.1e-06  Score=63.42  Aligned_cols=68  Identities=18%  Similarity=0.069  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHh
Q 008022          481 ITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNFAT  553 (581)
Q Consensus       481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  553 (581)
                      .++..++.+|.+.|++++|++.++++.+   +.| +..+|..++.++...|++++|+..|++.++  +.|+...
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~---~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~  136 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLK---IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLD  136 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccc---ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHH
Confidence            3567788888899999999999998888   456 677888899999999999999999999887  4565443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.3e-07  Score=86.02  Aligned_cols=226  Identities=10%  Similarity=-0.018  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHhCCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCChhHHHHHHHHH
Q 008022          288 EAVSVSYQMEENSCPPNVTTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVV-AYTCMVKVLCQNNMFHQAHSLIEKM  366 (581)
Q Consensus       288 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~  366 (581)
                      +|.+.+++..... +.....+..+..++...+++++|   |++++..  .|+.. ..+. ...+. ...+..+.+.++..
T Consensus         4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~-e~~Lw-~~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKV-EQDLW-NHAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTH-HHHHH-HHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhH-HHHHH-HHHHHHHHHHHHHh
Confidence            5667777766532 22344555566667767766655   6666543  12211 1111 01111 11234556666665


Q ss_pred             hhCCCCCChhhHHHHHH--HhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCccc
Q 008022          367 AFENCPPNTVTFNTFIK--GLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLN  444 (581)
Q Consensus       367 ~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  444 (581)
                      ......++..-......  .....+.++.++..+....... +++...+..+...+.+.|+.++|...+......  . .
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~-~  151 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--I-C  151 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--H-H
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--C-H
Confidence            54432233222222111  1222344555554444433322 234456666777777788888888777766542  1 2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHH
Q 008022          445 IVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLW  524 (581)
Q Consensus       445 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~  524 (581)
                      ..++..+...+...|++++|...|.++.... +.+...|+.++..+...|+..+|+..|.+.....  .|-+.++..|..
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~--~~~~~a~~nL~~  228 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK--FPFPAASTNLQK  228 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS--BCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCHHHHHHHHH
Confidence            3456667778888888888888888888764 4566788888888888888888888888887722  346667777766


Q ss_pred             HHHc
Q 008022          525 GICN  528 (581)
Q Consensus       525 ~~~~  528 (581)
                      .+.+
T Consensus       229 ~~~~  232 (497)
T d1ya0a1         229 ALSK  232 (497)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.32  E-value=8.2e-06  Score=62.23  Aligned_cols=74  Identities=15%  Similarity=0.013  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHH
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLL  523 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~  523 (581)
                      .+|..+..+|.+.|++++|++.+++++..+ +.+..+|..++.++...|++++|+..|+++.+   +.| +..+...+.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~---l~P~n~~~~~~l~  142 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS---LNPNNLDIRNSYE  142 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence            467778889999999999999999999875 56889999999999999999999999999998   567 444444443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=5.5e-06  Score=60.96  Aligned_cols=103  Identities=15%  Similarity=0.105  Sum_probs=75.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cC-----HHHHHHH
Q 008022          413 YNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK-LD-----AITFNII  486 (581)
Q Consensus       413 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l  486 (581)
                      +..+...+...|++++|+..|.+.++.+ +.+...+..+..+|.+.|++++|+..+++++..... +.     ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            4456677888888888888888888764 556778888888888888888888888888764211 11     2356777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhH
Q 008022          487 IYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISY  519 (581)
Q Consensus       487 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~  519 (581)
                      +..+...+++++|++.|++...   ..|+....
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~---~~~~~~~~  115 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLA---EHRTPDVL  115 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH---HCCCHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh---cCCCHHHH
Confidence            7788888888999988888776   33554433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.30  E-value=1e-05  Score=62.96  Aligned_cols=59  Identities=15%  Similarity=0.085  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          483 FNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                      |..++.+|.+.|++++|+..++++..   +.| +..+|..++.++...|++++|...|+++++
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~---l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALG---LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhh---cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44455566666666666666666665   334 455666666666666666666666666665

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.29  E-value=1.3e-05  Score=62.29  Aligned_cols=93  Identities=9%  Similarity=-0.043  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHH
Q 008022          446 VTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLW  524 (581)
Q Consensus       446 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~  524 (581)
                      .+|..+..+|.+.|++++|+..+++.+... +.+..++..++.+|...|++++|+..|+++.+   +.| +..+...+..
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~---l~P~n~~~~~~l~~  140 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQIFM  140 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence            356667888999999999999999999875 66888999999999999999999999999998   567 5555555555


Q ss_pred             HHHccCCHH-HHHHHHHHH
Q 008022          525 GICNSGGMQ-EAFIYLQKM  542 (581)
Q Consensus       525 ~~~~~g~~~-~A~~~~~~~  542 (581)
                      .....+... ...+.|..|
T Consensus       141 ~~~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1         141 CQKKAKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHH
Confidence            544444332 334444444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.29  E-value=2.2e-06  Score=64.70  Aligned_cols=110  Identities=10%  Similarity=-0.022  Sum_probs=59.9

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHH
Q 008022          457 RAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQ----------GKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWG  525 (581)
Q Consensus       457 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~  525 (581)
                      +.+.+++|+..+++.++.. |.+..++..++.+|...          +.+++|+..++++.+   +.| +..+|..++.+
T Consensus         9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhHHHH
Confidence            3444555555555555543 33445555555554432          334566666666666   445 45566666666


Q ss_pred             HHccC-----------CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHHHh
Q 008022          526 ICNSG-----------GMQEAFIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDDIM  578 (581)
Q Consensus       526 ~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  578 (581)
                      |...|           .+++|.+.|+++++  +.|+...+...+..+.      .|.++..++.
T Consensus        85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~~------ka~~~~~e~~  140 (145)
T d1zu2a1          85 YTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA------KAPQLHAEAY  140 (145)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH------THHHHHHHHH
T ss_pred             HHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHHH------HHHHHHHHHH
Confidence            65443           35677777777776  4666665554443333      2455554444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.28  E-value=8.7e-06  Score=63.47  Aligned_cols=64  Identities=13%  Similarity=-0.056  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          479 DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      ....+..++.++.+.|++++|+..+.++.+   +.| ++.+|..++.++...|++++|+..|+++++.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~---~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALE---IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhh---hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            344566667777777777777777777776   445 5666777777777777777777777777763

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.26  E-value=6.5e-06  Score=64.23  Aligned_cols=112  Identities=10%  Similarity=-0.003  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------CC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 008022          412 TYNELLDGLLRVNRVKEAFELVTEIEKC--------------GI-QLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGT  476 (581)
Q Consensus       412 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  476 (581)
                      .+......+...|++++|++.|.++++.              .+ +.....+..+..++.+.|++++|+..+.++++.. 
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-  107 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-  107 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-
Confidence            3455667788899999999999887532              01 2234466778889999999999999999999875 


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHH
Q 008022          477 KLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTSLLWGIC  527 (581)
Q Consensus       477 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~  527 (581)
                      +.+..+|..++.+|...|++++|++.|+++.+   +.| +......+..+..
T Consensus       108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~---l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1         108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQE---IAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred             hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH
Confidence            56888999999999999999999999999999   566 5555555554443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.20  E-value=3.6e-05  Score=60.02  Aligned_cols=136  Identities=13%  Similarity=0.043  Sum_probs=88.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 008022          416 LLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGK  495 (581)
Q Consensus       416 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  495 (581)
                      ........|++++|.+.|......-  +....     ..+ ..+.+  +...-..+.    ......+..++.++...|+
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l-----~~~-~~~~w--~~~~r~~l~----~~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREW--RGPVL-----DDL-RDFQF--VEPFATALV----EDKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT-----GGG-TTSTT--HHHHHHHHH----HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--ccccc-----ccC-cchHH--HHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence            3445667788888888888877641  11100     000 00111  111111111    1123467788999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHH-----HcCCCCCHHhHHHHHHHHHhccCCCC
Q 008022          496 VNNAIQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKML-----NEGICPNFATWNVLVRSLFSNLGHLG  569 (581)
Q Consensus       496 ~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~g~~~~  569 (581)
                      +++|+..++++..   ..| +...|..++.+|...|+.++|++.|+++.     +.|+.|...+. .+...+.+ ++...
T Consensus        83 ~~~Al~~~~~al~---~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~-~l~~~il~-~~~~~  157 (179)
T d2ff4a2          83 ASAVIAELEALTF---EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR-ALNERILR-QQPLD  157 (179)
T ss_dssp             HHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH-HHHHHHHT-TCCCC
T ss_pred             chHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH-HHHHHHHh-CCCCc
Confidence            9999999999998   567 78899999999999999999999999984     35899987664 34444333 44444


Q ss_pred             h
Q 008022          570 P  570 (581)
Q Consensus       570 a  570 (581)
                      +
T Consensus       158 ~  158 (179)
T d2ff4a2         158 A  158 (179)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.10  E-value=1.2e-05  Score=60.51  Aligned_cols=116  Identities=16%  Similarity=0.068  Sum_probs=78.5

Q ss_pred             HhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 008022          421 LRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR----------AGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAY  490 (581)
Q Consensus       421 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  490 (581)
                      .+.+.+++|...|+...+.. |.+...+..+..++..          .+.+++|++.++++++.+ +.+..+|..++.+|
T Consensus         8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence            34455677777777777653 5556666666666553          344578888888888865 55777888888888


Q ss_pred             HhcC-----------CHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 008022          491 CKQG-----------KVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKMLNEGI  547 (581)
Q Consensus       491 ~~~g-----------~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  547 (581)
                      ...|           .+++|.+.|+++.+   +.|+...+..-+..+      ..|.+++.+..+.|+
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~---l~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVD---EQPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccc---cCCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            7654           36889999999998   678655444333222      466777777766654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.8e-06  Score=80.84  Aligned_cols=115  Identities=12%  Similarity=-0.090  Sum_probs=56.2

Q ss_pred             CChhhHHHHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHH
Q 008022          373 PNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTIL  452 (581)
Q Consensus       373 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  452 (581)
                      ++...+..+...+.+.|+.+.|...+.......   ....+..+...+...|++++|...|++..+.. |.+...|+.+.
T Consensus       118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg  193 (497)
T d1ya0a1         118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLA  193 (497)
T ss_dssp             -------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHH
T ss_pred             hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHH
Confidence            344445555555666666666666555544311   12345556666667777777777777776653 44556677777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 008022          453 HGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK  492 (581)
Q Consensus       453 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  492 (581)
                      ..+...|+..+|...|.+.+... +|-..++..|...+.+
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence            77777777777777777777654 4566666666665544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.96  E-value=7e-06  Score=68.73  Aligned_cols=125  Identities=9%  Similarity=-0.049  Sum_probs=84.6

Q ss_pred             hHhhhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 008022            3 EKLGEKCEIDGVQYLLQQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFS   82 (581)
Q Consensus         3 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   82 (581)
                      +...++|++++|+..+++.++..+. +...+..++..++..|++++|.+.|+...+..+ .+...+..+...+...+..+
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P-~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFP-EYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHhccccH
Confidence            3467889999999999999998765 899999999999999999999999999998654 33444444444443333322


Q ss_pred             hHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 008022           83 MINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGNK  129 (581)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  129 (581)
                      ++..-.......+.+++...+......+...|+.++|.++++++.+.
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            22211111111121222333444556677889999999999988765

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.90  E-value=5.3e-06  Score=69.47  Aligned_cols=122  Identities=10%  Similarity=-0.076  Sum_probs=83.2

Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 008022          420 LLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNA  499 (581)
Q Consensus       420 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  499 (581)
                      ..+.|++++|+..+++.++.. |.|...+..+...++..|++++|.+.++...+.. +.+...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence            456789999999999988874 6678888899999999999999999999998864 33455555555555544444443


Q ss_pred             HHHHHHHhcCCCCCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 008022          500 IQLLDRIRGGGEWNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNE  545 (581)
Q Consensus       500 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (581)
                      ..-...... . ..| +...+...+..+...|+.++|.+.++++.+.
T Consensus        84 ~~~~~~~~~-~-~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKV-L-GENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEEC-C-CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhc-c-cCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            322221111 1 123 2334445566677889999999999888764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.89  E-value=0.00013  Score=56.67  Aligned_cols=71  Identities=14%  Similarity=0.065  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCcch
Q 008022           66 KIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLKALCKNNRVDGAYKLLVEMGN-----KGCAPDAVS  137 (581)
Q Consensus        66 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~  137 (581)
                      ..+..+...+.+.|++++|+..++.+.+.. +.+...|..++.++...|+..+|++.|+++.+     .|+.|...+
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            456677788888888888888888888776 67778888888888888888888888888744     477777654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.76  E-value=0.00011  Score=56.01  Aligned_cols=99  Identities=19%  Similarity=0.094  Sum_probs=74.3

Q ss_pred             HHHHHH--HHHHHhcCCHHHHHHHHHHHHHCCC-CcC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---
Q 008022          446 VTYNTI--LHGVCRAGMVVEAFQLLGKMLIEGT-KLD----------AITFNIIIYAYCKQGKVNNAIQLLDRIRGG---  509 (581)
Q Consensus       446 ~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---  509 (581)
                      .+|..+  ...+...|++++|++.|++.+.... .|+          ..+|+.++.+|...|++++|.+.+++....   
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            455555  5556678999999999999987521 111          357888999999999999999999998751   


Q ss_pred             -CCCCCC-----HHhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 008022          510 -GEWNPD-----IISYTSLLWGICNSGGMQEAFIYLQKMLN  544 (581)
Q Consensus       510 -~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (581)
                       ....++     ..++..++.+|...|++++|+..|+++++
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             112222     22567788999999999999999999986

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.69  E-value=0.00018  Score=54.84  Aligned_cols=97  Identities=12%  Similarity=-0.005  Sum_probs=57.7

Q ss_pred             hHHHH--HHHHHhcCCHHHHHHHHHHHHHcCC-cc----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-
Q 008022          412 TYNEL--LDGLLRVNRVKEAFELVTEIEKCGI-QL----------NIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTK-  477 (581)
Q Consensus       412 ~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~-~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-  477 (581)
                      +|..+  ...+...|++++|+..|++.++... .|          ...+|+.+..+|...|++++|.+.+++.+..... 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            44444  3445566777777777777664311 01          1245666777777777777777777777664210 


Q ss_pred             ----c-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          478 ----L-----DAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       478 ----~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                          +     ...+++.++.+|...|++++|++.|+++.+
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                0     112455666777777777777777776664

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00018  Score=49.01  Aligned_cols=70  Identities=10%  Similarity=0.114  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC----CCC-CHHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 008022          480 AITFNIIIYAYCKQGKVNNAIQLLDRIRGGGE----WNP-DIISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPNF  551 (581)
Q Consensus       480 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  551 (581)
                      ...+..++..+.+.|++++|+..|+++.+..+    ..+ ...++..++.++.+.|++++|+..++++++  +.|+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~   79 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH   79 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCC
Confidence            34455677777778888888777777654211    112 145677788888888888888888888877  35553

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00049  Score=46.79  Aligned_cols=71  Identities=13%  Similarity=0.162  Sum_probs=47.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-CHHhHHH
Q 008022          449 NTILHGVCRAGMVVEAFQLLGKMLIEG-----TKL-DAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNP-DIISYTS  521 (581)
Q Consensus       449 ~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~  521 (581)
                      -.+...+.+.|++++|...|+++++..     ..+ ...++..++.+|.+.|++++|++.++++.+   +.| +..+++.
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~---l~P~~~~a~~N   85 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE---LDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH---hCcCCHHHHHH
Confidence            345666777777777777777776541     111 245677788888888888888888888877   556 3445544


Q ss_pred             H
Q 008022          522 L  522 (581)
Q Consensus       522 l  522 (581)
                      +
T Consensus        86 l   86 (95)
T d1tjca_          86 L   86 (95)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.078  Score=47.91  Aligned_cols=52  Identities=8%  Similarity=-0.180  Sum_probs=30.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHccCCHHHHHHHHHHH
Q 008022          487 IYAYCKQGKVNNAIQLLDRIRGGGEWNPDIISYTSLLWGICNSGGMQEAFIYLQKM  542 (581)
Q Consensus       487 ~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (581)
                      +..+...|....|...|..+..    ..+......++....+.|.++.|+....+.
T Consensus       388 a~~L~~~g~~~~A~~e~~~l~~----~~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         388 VRELMYWNLDNTARSEWANLVK----SKSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHcCCchHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            3455566777777776666654    123334445555566667777766665554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.16  E-value=0.0078  Score=43.72  Aligned_cols=110  Identities=14%  Similarity=0.035  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHH
Q 008022          425 RVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCK----QGKVNNAI  500 (581)
Q Consensus       425 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~  500 (581)
                      ++++|+++|++..+.|.+   .....+.  .....+.++|.+++++..+.|   ++.....+...|..    ..++++|.
T Consensus         8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            455666666666555421   1111121  123456677777777777655   44555556666654    34677788


Q ss_pred             HHHHHHhcCCCCCCCHHhHHHHHHHHHc----cCCHHHHHHHHHHHHHcC
Q 008022          501 QLLDRIRGGGEWNPDIISYTSLLWGICN----SGGMQEAFIYLQKMLNEG  546 (581)
Q Consensus       501 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  546 (581)
                      ++|++..+.    -++.....|...|..    ..+.++|.++|+++.+.|
T Consensus        80 ~~~~~aa~~----g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGL----NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhcc----CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            888877762    234455556666654    356778888888877765

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.70  E-value=0.034  Score=40.12  Aligned_cols=108  Identities=9%  Similarity=-0.042  Sum_probs=59.1

Q ss_pred             ChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHh----cCCHHHHH
Q 008022          390 RVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCR----AGMVVEAF  465 (581)
Q Consensus       390 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~  465 (581)
                      |+++|.+.|++..+.+.   ......+.  .....+.++|+++++...+.|   ++.....|...|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            44555555555554441   11111121  122345666777777666654   33344444444443    34667777


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhc
Q 008022          466 QLLGKMLIEGTKLDAITFNIIIYAYCK----QGKVNNAIQLLDRIRG  508 (581)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  508 (581)
                      ++|++..+.|   ++.....|...|..    ..+.++|.++++++.+
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            7777777655   44455556666655    3467777777777766

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.42  Score=42.83  Aligned_cols=373  Identities=12%  Similarity=-0.002  Sum_probs=182.7

Q ss_pred             CCHHHHHHHHHHhCCCcch---HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHHccCChhHHHHHHHH
Q 008022          149 GQVEEARELAMRFGSGVSV---YNALINGLCKEHKIEEAFWLLCEMVDRGIDPNVITYSTIISSLCDVGNVETSLGILGQ  225 (581)
Q Consensus       149 g~~~~a~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  225 (581)
                      ....+...++++.|..+..   ....+..+.+.+++...+..+    . ..+.+...-.....+....|+.+.|...+..
T Consensus        53 ~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~-~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~  127 (450)
T d1qsaa1          53 QPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----P-EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKE  127 (450)
T ss_dssp             CCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----C-SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----c-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            3455555555555444332   233445556666665544332    1 1122232223445556667777777666665


Q ss_pred             HHHcCCCCCcccHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCcH
Q 008022          226 MFVRGCNPNIHSFTSLLKGYLLGGRTHEASDLWNRMIREGFLPNVVAYSTLIHGLCSNGSMDEAVSVSYQMEENSCPPNV  305 (581)
Q Consensus       226 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  305 (581)
                      +-..|. ..+.                .+..++..+...|. .+...+-.-+......|+...|..+...+..    ...
T Consensus       128 lW~~~~-~~p~----------------~c~~l~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~  185 (450)
T d1qsaa1         128 LWLTGK-SQPN----------------ACDKLFSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQ  185 (450)
T ss_dssp             HHSCSS-CCCT----------------HHHHHHHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGH
T ss_pred             HHhcCC-CCch----------------HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHH
Confidence            554431 1121                22233333333332 2333333344444555666666555432211    112


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc--cCChhHHHHHHHHHhhCCCCCChhhHH----
Q 008022          306 TTYSALIDGFAKAGNLLGASQIWNRMISNGCSPNVVAYTCMVKVLCQ--NNMFHQAHSLIEKMAFENCPPNTVTFN----  379 (581)
Q Consensus       306 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~----  379 (581)
                      ......+....   +...+....   ...  .++......+..++.+  ..+.+.+..++....... ..+.....    
T Consensus       186 ~~~~a~~~l~~---~p~~~~~~~---~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~  256 (450)
T d1qsaa1         186 TIASAIISLAN---NPNTVLTFA---RTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRD  256 (450)
T ss_dssp             HHHHHHHHHHH---CGGGHHHHH---HHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred             HHHHHHHHHHh---ChHhHHHHH---hcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHH
Confidence            22222222221   122222211   111  1122222222222222  246677777777765543 22222221    


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHhcC
Q 008022          380 TFIKGLCGCGRVDWAMKLLDQMKQYECLPNITTYNELLDGLLRVNRVKEAFELVTEIEKCGIQLNIVTYNTILHGVCRAG  459 (581)
Q Consensus       380 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  459 (581)
                      .+.......+..+.+...+.......  .+.......+......+++..+...+..+... ......-.--+..++...|
T Consensus       257 ~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G  333 (450)
T d1qsaa1         257 IVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERG  333 (450)
T ss_dssp             HHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcC
Confidence            22233344566677777777665543  33443344444556678888888888777543 1223344445667788889


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCHH----hHHHHHHHHHccCCHHHH
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRGGGEWNPDII----SYTSLLWGICNSGGMQEA  535 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A  535 (581)
                      +.+.|...|..+..   .++   |...+ +..+.|..-..      -.......+...    .-...+..+...|....|
T Consensus       334 ~~~~A~~~~~~~a~---~~~---fYG~L-Aa~~Lg~~~~~------~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A  400 (450)
T d1qsaa1         334 REAEAKEILHQLMQ---QRG---FYPMV-AAQRIGEEYEL------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTA  400 (450)
T ss_dssp             CHHHHHHHHHHHHT---SCS---HHHHH-HHHHTTCCCCC------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHH
T ss_pred             ChhhHHHHHHHHhc---CCC---hHHHH-HHHHcCCCCCC------CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHH
Confidence            99999999988764   233   32222 12222321000      000000001100    111335667889999999


Q ss_pred             HHHHHHHHHcCCCCCHHhHHHHHHHHHhccCCCChHHHHHH
Q 008022          536 FIYLQKMLNEGICPNFATWNVLVRSLFSNLGHLGPVYILDD  576 (581)
Q Consensus       536 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  576 (581)
                      ...+..+...   .+......+.....+.|.++.|+....+
T Consensus       401 ~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~  438 (450)
T d1qsaa1         401 RSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIA  438 (450)
T ss_dssp             HHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHH
Confidence            9999988763   3455566677778888999988876654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.085  Score=36.60  Aligned_cols=46  Identities=13%  Similarity=0.131  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          462 VEAFQLLGKMLIEGTKLD-AITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       462 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ++++.+++++.+.+ +.+ ...+..++-+|.+.|++++|.+.++++.+
T Consensus        55 ~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          55 RLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            34444444444332 111 23344444444444444444444444444

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.081  Score=36.71  Aligned_cols=77  Identities=13%  Similarity=0.024  Sum_probs=59.9

Q ss_pred             CCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCC-C-HHhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 008022          476 TKLDAITFNIIIYAYCKQG---KVNNAIQLLDRIRGGGEWNP-D-IISYTSLLWGICNSGGMQEAFIYLQKMLNEGICPN  550 (581)
Q Consensus       476 ~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  550 (581)
                      ..++..+-..++.++.++.   +.++++.+++.+..   ..| + ...+-.|+.+|.+.|++++|+++++.+++  +.|+
T Consensus        31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~---~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~  105 (124)
T d2pqrb1          31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYK---EAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN  105 (124)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT
T ss_pred             CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCC
Confidence            3567778888888888765   46689999999887   245 3 35777899999999999999999999998  5777


Q ss_pred             HHhHHHH
Q 008022          551 FATWNVL  557 (581)
Q Consensus       551 ~~~~~~l  557 (581)
                      ..-...+
T Consensus       106 n~qA~~L  112 (124)
T d2pqrb1         106 NKQVGAL  112 (124)
T ss_dssp             CHHHHHH
T ss_pred             cHHHHHH
Confidence            5544333

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.82  E-value=0.15  Score=34.91  Aligned_cols=58  Identities=17%  Similarity=0.097  Sum_probs=30.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          450 TILHGVCRAGMVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       450 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      ..++...+.|.-++-.+++..+.+.+ ++++..+..++.+|.+.|+..++.+++.++-+
T Consensus        91 lALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          91 KALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            33444455555555555555554433 45555555555555555555555555555544

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.35  E-value=0.47  Score=32.51  Aligned_cols=58  Identities=12%  Similarity=0.060  Sum_probs=26.0

Q ss_pred             HHHHHccCChhHHHHHHHHHhhCCCCCChhhHHHHHHHhhcCCChHHHHHHHHHHhhCC
Q 008022          347 VKVLCQNNMFHQAHSLIEKMAFENCPPNTVTFNTFIKGLCGCGRVDWAMKLLDQMKQYE  405 (581)
Q Consensus       347 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  405 (581)
                      +..+.+.|.-++-.+++..+.+.+ .+++...-.+..+|.+.|+..++-+++.+.-+.|
T Consensus        93 Ld~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          93 LDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            334444444444444444443322 4444444444445555555555544444444443

>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy-chain linker domain
domain: Clathrin heavy-chain linker domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.50  E-value=1.2  Score=31.81  Aligned_cols=103  Identities=15%  Similarity=0.115  Sum_probs=71.6

Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCC
Q 008022           19 QQMKVEGVSCSEGVFISVINSYRRVGLAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEP   98 (581)
Q Consensus        19 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~   98 (581)
                      +...+.|.+-....|..-...+...|++.+|-++-....+ |+-.++.+.+..-..-...|...-.+.+|..+.+.| ..
T Consensus        20 ~lA~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~pGq~spLL~YF~~Ll~~~-~L   97 (157)
T d1bpoa1          20 RMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QL   97 (157)
T ss_dssp             HHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CC
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcC-CC
Confidence            3344557777778888888889999999998888765554 555777776665554455677777888888888776 55


Q ss_pred             ChhhHHHHHHHHHhcCChhHHHHHH
Q 008022           99 NVFTYNILLKALCKNNRVDGAYKLL  123 (581)
Q Consensus        99 ~~~~~~~l~~~~~~~~~~~~a~~~~  123 (581)
                      |...-.-+++.....|+.+-..+.+
T Consensus        98 N~~ESlEl~r~vL~q~r~~lve~Wl  122 (157)
T d1bpoa1          98 NKYESLELCRPVLQQGRKQLLEKWL  122 (157)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHhHHHHHHHHhcCcHHHHHHHH
Confidence            6555555666666777766555543

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.15  E-value=1.2  Score=28.79  Aligned_cols=63  Identities=22%  Similarity=0.210  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCCChhhHHHHHH
Q 008022           45 LAEQALKMFYRIREFGLKPTVKIYNHILDALLAENRFSMINPIYSNMKRDGMEPNVFTYNILLK  108 (581)
Q Consensus        45 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  108 (581)
                      +.-++++.++.+......|++.+..+.+++|.+.+++..|.++|+-++... .++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence            455677777777777777888888888888888888888888887776542 234456665553

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.50  E-value=1.7  Score=28.04  Aligned_cols=49  Identities=8%  Similarity=0.084  Sum_probs=28.5

Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 008022          460 MVVEAFQLLGKMLIEGTKLDAITFNIIIYAYCKQGKVNNAIQLLDRIRG  508 (581)
Q Consensus       460 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  508 (581)
                      +.-++.+-++.+....+-|++.+....+++|.+.+|+..|.++++.+..
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3344455555555555556666666666666666666666666665554