Citrus Sinensis ID: 008025

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580
Protein Sequence
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM
Secondary Structure (PSIPRED)
ccccccHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEcccccccccccccHHHHcccccccccHHHHHHHHHcccEEHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHccccEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccHHHHcHHHHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccHEEEEEEcHHHHHHHHHHHHHHHcHHHHHHHEHHHHccHHccccccccccccccEEEEEcccccccccccccHHHHHHccccccccHHHHHHHHHcccEEEEEccccHHccccccEEcccEEccccccccEccccccHHHHHHHHcccccEEEEEEcccccHHHHHHHccEEEEccccccccccEccccccccEEEEEEccHHHHHHHHHHHHcccccccccccHcccccccccEEcccHHHHHccccHHHHHHHHHHHHHHHHcccHEEEEccEEEEEccHHHHHHHHHHcccEccccccHHHHHHHHHHcHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccHHHHHHHccEEEHccccccEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHHcHHccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEklqllpppqplppkaphpltglsfavsdlfdiegyvtgfghpewarthsaasrTSTVVSTLVEGGATCIGKTVVDEFAYsingtnkhydtptnpaapsqmpggsssgAAVAVAADLVDfslgidtvggvrvpsafcgilgfrpsygavshmgiipistsldtvgwfardpkilRHVGHVLLqlpfaaqrsprqiiIADDCFellkipadRVVQVVIKSTEKlfgrqvlkhenlgeyfdskvpslkgfhktnGELKNVMRLIQRYEFknnhnewiesvkpaldpdisAEIGEMLEISETVIENCKSIRNEMRSAISSLlkddgilvtpttaypppklggkemlsEDYQNRAFSLLSIASVSgccqvtvplgyydkcptsvSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLngnnatyySNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLeptnkraslSADRLRKVFM
Flexible Loop (DISEMBL)
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLpfaaqrspRQIIIADDCFELLKIPADRVVQVVIKSTeklfgrqvlkhenlgeyfdskvpslkgfhktngELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSllkddgilvtPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEkgnqaykdKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTkainldkknvkayLRRGTAREMLGYYKEAIEDFSYALvleptnkraslsadrlrkvfm
Low Complexity Region (SEG)
MASQSANlwvllglglagillMTKKLKKNIKQDFGAFIEklqllpppqplppkaphplTGLSFAVSDLFDIEGYVTGFGHPEWarthsaasrtstvvstLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPggsssgaavavaaDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM
Disordered region (IsUnstruct)
******NLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLL*************LTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTN***********************AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY************EDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL*********************************YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE******************
Disordered Region (DISOPRED)
*****AN**VLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQL**************LTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE*******************************YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT*K******DRLRKVFM
Disordered Region (DISEMBL)
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWA*************STLVEGGATCIGKTVVDEFAYSINGTNKHYDTPT****************AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM
Disordered Region (DISPRO)
****SANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSS**A****ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIAT***************EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR**F*
Transmembrane Helix (TMHMM)
iiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	580	2.2.26 [Sep-21-2011]
Q9MUK5	593	Translocon at the outer m	N/A	no	0.998	0.976	0.706	0.0
Q9LVH5	589	Outer envelope protein 64	yes	no	0.994	0.979	0.727	0.0
F4KCL7	603	Outer envelope protein 64	no	no	0.982	0.945	0.538	1e-180
Q9FR37	425	Amidase 1 OS=Arabidopsis	no	no	0.7	0.955	0.517	1e-119
Q8PXJ1	476	Glutamyl-tRNA(Gln) amidot	yes	no	0.643	0.783	0.255	1e-23
Q8THJ1	476	Glutamyl-tRNA(Gln) amidot	yes	no	0.643	0.783	0.262	1e-23
Q5X4H5	483	Glutamyl-tRNA(Gln) amidot	yes	no	0.618	0.743	0.266	2e-23
P47345	477	Glutamyl-tRNA(Gln) amidot	yes	no	0.301	0.366	0.349	3e-23
Q5WVW0	483	Glutamyl-tRNA(Gln) amidot	yes	no	0.618	0.743	0.268	3e-23
A5ICP2	483	Glutamyl-tRNA(Gln) amidot	yes	no	0.618	0.743	0.268	4e-23

>sp|Q9MUK5|TOC64_PEA Translocon at the outer membrane of chloroplasts 64 OS=Pisum sativum GN=TOC64 PE=1 SV=1

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/589 (70%), Positives = 491/589 (83%), Gaps = 10/589 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS S+ +WV+LGLGLAGI ++T+KL + +K+DFGAF+ KL+LLPPP P PPKAPHPL+ 
Sbjct: 4   MASPSSQIWVILGLGLAGIYVLTRKLTQAVKEDFGAFLLKLKLLPPPPPAPPKAPHPLSS 63

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FA+SD+FDIEG+V+ FGHPEWARTH  AS T++ VS LVE GATCIG TVVDE AY I
Sbjct: 64  LNFAISDIFDIEGHVSTFGHPEWARTHEPASSTASAVSALVESGATCIGTTVVDELAYGI 123

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKH+ TPTNPA P+++PGGSSSGAAVAVAA+ VDFSLG+DT GGVRVP+ FCGILGF
Sbjct: 124 SGENKHFGTPTNPAVPNRVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 183

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+GAVSH+GIIP+STSLDTVGWFA+DP +LR VGH+LLQ PF  QR+PRQIIIADDCF
Sbjct: 184 RPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVLRRVGHILLQAPFVMQRNPRQIIIADDCF 243

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKG--FHKTNGELK---- 294
           + L +P DR  QVVIK+TEKLFG+QVLKH N  +Y  SKV SLK     K+NG LK    
Sbjct: 244 QHLNVPLDRTSQVVIKATEKLFGKQVLKHINFEDYISSKVSSLKACSIQKSNGVLKSSSL 303

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               NVM+ +QR+EF++ H+EW+  VKP L P +SA++ E  E+SE  IEN KS+R+E+R
Sbjct: 304 KLLANVMQSLQRHEFEHTHSEWMSIVKPDLHPAVSAQLHEKFEVSELEIENSKSVRSELR 363

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            A++SLLKD+G+LV PT A PPPKLGGKE LS DYQ+RA SLLSIAS+SGCCQVTVPLG+
Sbjct: 364 VAVNSLLKDEGVLVIPTVADPPPKLGGKEFLSHDYQSRALSLLSIASISGCCQVTVPLGF 423

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           +DK P SVS IARHGGDRFLLDT++ MY  LQEQADIA  SK S +  +++QSAEI+KEK
Sbjct: 424 FDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQEQADIAAPSKSSKSVVSKEQSAEISKEK 483

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYKDKQW KAI FYTEAIKL GNNATYYSNRA AYLE GS+LQAE DCT AI+ DKK
Sbjct: 484 GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKK 543

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579
           NVKAY RRGTAREMLGYYKEAI+DF YALVLEPTNKRA+ SA+RLRK+F
Sbjct: 544 NVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRAASSAERLRKLF 592

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane.
Pisum sativum (taxid: 3888)

>sp|Q9LVH5|OE64C_ARATH Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/587 (72%), Positives = 491/587 (83%), Gaps = 10/587 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MASQ+ANLWVLLGLGLAGIL++TKKLKK +++DFGAFI+KL LLPPPQP PPKAPHPLTG
Sbjct: 1   MASQAANLWVLLGLGLAGILMLTKKLKKTVREDFGAFIDKLMLLPPPQPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSD+FDI GYVTGFGHP+W RTH AAS TS VVSTLVEGGATC+GKTVVDEFA+SI
Sbjct: 61  LTFAVSDVFDITGYVTGFGHPDWVRTHEAASSTSPVVSTLVEGGATCVGKTVVDEFAFSI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKHYD+PTNPAAP+++PGG+ SGAAVAVA + VDF+LGIDTVGGVRVP+ +CG+LGF
Sbjct: 121 SGENKHYDSPTNPAAPTRIPGGACSGAAVAVATNAVDFALGIDTVGGVRVPAGYCGVLGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           + SYGA+S+ GIIP+S+SLD+VGWFARDP  LR VGHVLLQLPFA QR+PRQII+ADDCF
Sbjct: 181 KSSYGAISNTGIIPVSSSLDSVGWFARDPNTLRRVGHVLLQLPFATQRNPRQIILADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNG--------- 291
           +LLKIP DR+ QVV KS EKLFGRQ+LKH+NL  YF++KVPSLK F +T           
Sbjct: 241 QLLKIPVDRITQVVTKSAEKLFGRQLLKHQNLETYFETKVPSLKEFARTKAIANTKVSTS 300

Query: 292 -ELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
             L NVM+L+QR+EF  NH +WI +VKPA+DP I +++ E  E++    EN  +IRNE R
Sbjct: 301 RLLANVMQLLQRHEFLQNHGDWINTVKPAIDPVILSQVCENPELTNEETENLNAIRNETR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            AI SLLKDDGILV PT    PPKLG KE+ SEDYQNRA SLLSIAS+SGCCQVTVPLG+
Sbjct: 361 VAIGSLLKDDGILVIPTLPAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGH 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           ++KCP SVSFI RHGGDRFLLDTVQ MY SLQE + I T  K S     +++SAEIAKEK
Sbjct: 421 HEKCPISVSFIGRHGGDRFLLDTVQTMYPSLQEYSSIVTDPKSSKKAITKEESAEIAKEK 480

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQA+K+K W KAI  Y+EAIKL+ NNATYYSNRAAAYLE G FLQAE DCTKAI LDKK
Sbjct: 481 GNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKK 540

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577
           NVKAYLRRGTAREMLG  K AIEDF YALVLEP NKRASLSA+RLRK
Sbjct: 541 NVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNNKRASLSAERLRK 587

Chaperone receptor mediating Hsp90-dependent protein targeting to chloroplasts. Bi-functional preprotein receptor acting on both sides of the membrane. Not essential for an efficient import of pre-proteins into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|F4KCL7|OE64M_ARATH Outer envelope protein 64, mitochondrial OS=Arabidopsis thaliana GN=OM64 PE=1 SV=1

 Score =  631 bits (1627), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 315/585 (53%), Positives = 412/585 (70%), Gaps = 15/585 (2%)

Query: 8   LWVLLGLGLAGILLMTKKLKKNIK----QDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSF 63
           +WV++G+ +AGI+++ +  K+ I+    +DFGAF+++ +LLP P P PP A   L+GL+F
Sbjct: 17  VWVVIGVTVAGIVILAETRKRRIRALREEDFGAFLDRFELLPFPPPPPPAAKQSLSGLTF 76

Query: 64  AVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGT 123
           ++SD FD++ Y+TGFG P+W +TH AA +T+ VV+TL++ GATC+GKT++DE  + I G 
Sbjct: 77  SISDAFDVKDYITGFGCPQWKKTHEAAEKTAVVVTTLLKNGATCVGKTIMDELGFGIIGE 136

Query: 124 NKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPS 183
           NKHY TP NP  P  +PGG SSG+AV+V A+LVDFSLGIDT GGVRVP+AFCGILGFRPS
Sbjct: 137 NKHYGTPINPLMPDNVPGGCSSGSAVSVGAELVDFSLGIDTTGGVRVPAAFCGILGFRPS 196

Query: 184 YGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELL 243
            G VS +G++P S SL+TVGWFA DP +L  VGH LL L     R  R +I ADD FEL 
Sbjct: 197 QGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAVTHRRQRSLIFADDLFELS 256

Query: 244 KIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKN-------- 295
            IP  + VQVV K+ E L G +  KH N+G+Y  S VPSL  F + +G+ +N        
Sbjct: 257 DIPKQKSVQVVRKAIENLSGYKTPKHVNVGQYVASNVPSLAEFCEQSGKSQNSASTLRAL 316

Query: 296 --VMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAI 353
             VM  IQR+EFK NH EW ++ K  L P  S ++   L+     I++   ++NEMR+ I
Sbjct: 317 SSVMLAIQRHEFKTNHEEWWQTCKSFLGPRFSNDVVTALKSKNESIKSLYRVKNEMRATI 376

Query: 354 SSLLKDDGILVTPTTAYPPPKLGGKEMLS-EDYQNRAFSLLSIASVSGCCQVTVPLGYYD 412
            SLLK+DGILV PT A PPP+L  K   S  ++ +R ++L  IAS+SGCCQVT+PLG + 
Sbjct: 377 QSLLKEDGILVIPTVADPPPRLNTKRNKSLNEFLDRTYALSCIASMSGCCQVTIPLGEHG 436

Query: 413 KCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGN 472
             P SVS +  +GGD+FLLDT  ++YASLQ+QA +A+     ++T    +++E+ KEKGN
Sbjct: 437 DRPISVSLLTYYGGDKFLLDTTLDVYASLQDQAKLASNLAPVSDTNGNMEASEVMKEKGN 496

Query: 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532
            AYK KQW KA++FYTEAIKLNG NATYY NRAAA+LE   F QAE DCTKA+ +DKKNV
Sbjct: 497 AAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLIDKKNV 556

Query: 533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577
           KAYLRRGTARE L  YKEA  DF +ALVLEP NK A ++  RLRK
Sbjct: 557 KAYLRRGTARESLVRYKEAAADFRHALVLEPQNKTAKVAEKRLRK 601

Chaperone receptor mediating Hsp90-dependent protein targeting to mitochondria.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FR37|AMI1_ARATH Amidase 1 OS=Arabidopsis thaliana GN=AMI1 PE=1 SV=1

 Score =  429 bits (1104), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/423 (51%), Positives = 286/423 (67%), Gaps = 17/423 (4%)

Query: 31  KQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA 90
             DFGAFIEK+ +          +P  L GL+FA+ D+FD+EG VTGFG+P+W RTHSAA
Sbjct: 4   NNDFGAFIEKVTIS---PTSTSSSPPSLQGLTFAIKDIFDVEGRVTGFGNPDWLRTHSAA 60

Query: 91  SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVA 150
           + T+ VVS+L+E GAT +G T++DE AYSING N HY TP NP A  ++PGGSSSG+AVA
Sbjct: 61  TSTAPVVSSLLEAGATALGITIMDEMAYSINGENAHYGTPRNPIAFDRVPGGSSSGSAVA 120

Query: 151 VAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 210
           VAA LVDFS+G DT G VRVP+++CGI GFRPS+GAVS +G+ P++ S DTVGWFARD  
Sbjct: 121 VAARLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQSFDTVGWFARDTA 180

Query: 211 ILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF-GRQVLKH 269
            L+ VG VLLQ        P Q+IIADDCF+L  +P D +VQ ++ S EK F G  V+K 
Sbjct: 181 TLKRVGCVLLQQHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSVEKSFGGNTVVKK 240

Query: 270 ENLGEYFDSKVPSLKGFHKTNG-------------ELKNVMRLIQRYEFKNNHNEWIESV 316
            NLGEY    VPSLK F  ++               L + MRL+QR+EFK NH  WI SV
Sbjct: 241 VNLGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHEFKINHGAWISSV 300

Query: 317 KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 376
           KP   P IS  I E +  S+  I++C+S+++E+ +A+S+LL + G+LV PT   PPP L 
Sbjct: 301 KPEFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPTVPGPPPHLQ 360

Query: 377 GKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQN 436
                 E +++RAFSLLSIA VSG CQV++PLG ++  P SVS +A++G D FLL  V +
Sbjct: 361 ANVAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKYGSDGFLLSLVDS 420

Query: 437 MYA 439
           + A
Sbjct: 421 LAA 423

Amidase involved in auxin biosynthesis. Converts indole-3-acetamide into indole-3-acetic acid. Can also use L-asparagine, oleamide and 1-naphtalene-acetamide as substrates, but not indole-3-acetonitrile or indole-3-acetyl-L-aspartic acid.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

>sp|Q8PXJ1|GATA_METMA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=gatA PE=3 SV=1

 Score =  112 bits (279), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 182/431 (42%), Gaps = 58/431 (13%)

Query: 57  PLTGLSFAVSDLFDI------------EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGG 104
           PL G+  A+ D   +            EGYV  F               + V+  L+  G
Sbjct: 61  PLAGVPIAIKDNISVVGLPNSCGSKILEGYVPPF--------------NAHVIEKLLSAG 106

Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDT 164
           A  +GKT +DEFA   +    H+    NP    ++PGGSS G+A  VAA    F+LG DT
Sbjct: 107 AVILGKTNMDEFAMGSSTETSHFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDT 166

Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA---RDPKILRHV--GHVL 219
            G VR P++FCG++G +P+YGAVS  G++  + SL+ VG  A    D  +L  V  G+  
Sbjct: 167 GGSVRCPASFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDIAVLMDVIAGYDR 226

Query: 220 LQLPFAAQRSPRQIIIADDCFEL-LKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDS 278
                   ++  Q  + DD   L + +P +   + +    EK     + K E+LG  ++ 
Sbjct: 227 RDSTSIDSKTEYQKALVDDVKGLKIGVPKEFFGEGIHPDVEKAVWDAIHKCESLGATWEE 286

Query: 279 -KVPSLK----GFH--KTNGELKNVMRLI-QRYEFKNNHNEWIESVKPALDPDISAEIGE 330
             +P +K     ++    +    N+ R    RY F+     W   V          E+  
Sbjct: 287 VSMPHIKYALASYYIIAMSEASSNLARFDGTRYGFRAGGENWHAMVSKTRAEGFGTEVKR 346

Query: 331 MLEISETVIENCKSIRNEMRS-AISSLLKDD--------GILVTPTTAYPPPKLGGKEML 381
            + +    +      +  +++  + +L+K D         +L+ PT   P  K+G K   
Sbjct: 347 RILLGTYALSAGYHDKYYLKALKVRTLVKQDFDKALSKVDLLMAPTMPNPAFKIGEK--- 403

Query: 382 SEDYQNRAFSLLSIASV--SGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYA 439
            ED      S ++   +  +G   ++VP G+ D  P  +  +    G  F  +TV     
Sbjct: 404 IEDPLTLYLSDINTCPINLAGVPSISVPCGFTDGLPIGLQIM----GKPFDEETVLRAAY 459

Query: 440 SLQEQADIATK 450
           + ++  D  TK
Sbjct: 460 TFEKNTDYHTK 470

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (taxid: 192952)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q8THJ1|GATA_METAC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=gatA PE=3 SV=1

 Score =  112 bits (279), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 182/431 (42%), Gaps = 58/431 (13%)

Query: 57  PLTGLSFAVSDLFDI------------EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGG 104
           PL G+  A+ D   +            EGYV  F               + V+  L++ G
Sbjct: 61  PLAGVPIAIKDNISVVGLPNSCGSKILEGYVPPF--------------NAHVIEKLLDAG 106

Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDT 164
           A  +GKT +DEFA   +    +Y    NP    ++PGGSS G+A  VAA    F+LG DT
Sbjct: 107 AVILGKTNLDEFAMGSSTETSYYGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDT 166

Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFA---RDPKILRHV--GHVL 219
            G VR P+AFCG++G +P+YGAVS  G++  + SL+ VG  A    D  IL  V  G+  
Sbjct: 167 GGSVRCPAAFCGVVGLKPTYGAVSRYGVVAYANSLEQVGPLANNVEDIAILMDVIAGYDR 226

Query: 220 LQLPFAAQRSPRQIIIADDCFEL-LKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYF-D 277
                   ++  Q  + DD   L + +P +   + +    EK     + K E+LG    +
Sbjct: 227 RDSTSIDSKTEYQKALVDDVKGLKIGVPKEFFGEGIHPGVEKAVWNAIHKFESLGATRQE 286

Query: 278 SKVP----SLKGFH--KTNGELKNVMRLI-QRYEFKNNHNEWIESVKPALDPDISAEIGE 330
             +P    +L  ++    +    N+ R    RY F+ N   W   V          E+  
Sbjct: 287 VSMPNINYALASYYIIAMSEASSNLARFDGTRYGFRANGENWHAMVSKTRAEGFGTEVKR 346

Query: 331 MLEISETVIENCKSIRNEMRS-AISSLLKDD--------GILVTPTTAYPPPKLGGKEML 381
            + +    +      +  +++  + +L+K D         +L+ PT   P  ++G K   
Sbjct: 347 RILLGTYALSAGYHDKYYLKALKVRTLVKQDFDKALSTVDLLMAPTMPNPAFRIGEK--- 403

Query: 382 SEDYQNRAFSLLSIASV--SGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYA 439
            ED      S ++   +  +G   V+VP G+ D  P  +  +    G  F   TV     
Sbjct: 404 IEDPLTLYLSDVNTCPINLAGVPSVSVPCGFTDGLPVGLQIM----GKPFDEPTVLRAAY 459

Query: 440 SLQEQADIATK 450
           + ++  D  TK
Sbjct: 460 TFEKNTDYHTK 470

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q5X4H5|GATA_LEGPA Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Paris) GN=gatA PE=3 SV=1

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 185/413 (44%), Gaps = 54/413 (13%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PLTG+  A+ DLF  +   T       A     A   +T+V+   + GA  IGKT +DEF
Sbjct: 66  PLTGIPMALKDLFCTKRLNTTCASKMLANFQ--APYDATIVTKFKQNGAIIIGKTNMDEF 123

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +  N ++ +  NP    ++PGGSS G+A AVA +LV F++G DT G +R P+AFCG
Sbjct: 124 AMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCG 183

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIA 236
           I G +P+YG VS  G++  ++SLD  G FA+  + L  + H +         S  ++I  
Sbjct: 184 ISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKDSTSVDRVI-- 241

Query: 237 DDCFELLKIPADRV----------------VQVVIKSTEKLFGRQVLKHENLGEYFDSKV 280
            D    +K P D++                +Q  I +  KLF       ENLG       
Sbjct: 242 PDYSAEIKKPVDKIRIGLPSCFFQPQVEKGIQDAIHNAVKLF-------ENLGAEIIEID 294

Query: 281 PSLKGF------------HKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 328
             L+ F              +N    + +R   R     + +  IE +  +       E+
Sbjct: 295 LKLQPFWVPCYYVIACAEASSNLSRYDGIRFGHR---SKSASTLIELITNSRSEGFGNEV 351

Query: 329 GEMLEISETVIE---------NCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKE 379
              +     V+          + + +R  +R  + + L    +++ PTT     KLG  E
Sbjct: 352 KRRILTGTHVLSSGFFDAYYLHAQKVRRLIRDELITTLNSVDVILGPTTPTTAFKLG--E 409

Query: 380 MLSEDYQNRAFSLLSIAS-VSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
            +++  QN    + ++A+ ++G   +++P G+ +K P  +  + +H  +  LL
Sbjct: 410 KINDPIQNYLADVFTVAANLAGLPAISIPTGFENKLPIGLQLMGKHFSESRLL 462

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Legionella pneumophila (strain Paris) (taxid: 297246)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|P47345|GATA_MYCGE Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=gatA PE=3 SV=1

 Score =  110 bits (276), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 101/183 (55%), Gaps = 8/183 (4%)

Query: 93  TSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVA 152
           ++TV   L   GA  +GK  +DEF     G+   +    +P   S + GGSSSG+A AVA
Sbjct: 93  SATVFELLEMNGALLVGKANMDEFGLGGTGSYSAFGVVHHPENSSLIAGGSSSGSAYAVA 152

Query: 153 ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 212
            D+V FS+  DT   +R P++ C ++GF+P+YG +S  G+ P + S+D VG FA+    +
Sbjct: 153 KDIVPFSIATDTGDSIRRPASICNVVGFKPTYGLISRNGVFPYAPSMDHVGIFAKFVSDI 212

Query: 213 RHVGHVLL---QLPFAAQRSPRQIIIADDCFELLKIPADRVVQV-VIKSTEKLFGRQVLK 268
             V  V++   +  F++Q+SP +    +  F  L IP  R ++   +K  EKLF + + K
Sbjct: 213 AIVSDVVIKHDKTDFSSQKSPDE----NQFFNELAIPFTRSIRFGYLKPLEKLFNKHLQK 268

Query: 269 HEN 271
             N
Sbjct: 269 KWN 271

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q5WVW0|GATA_LEGPL Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Lens) GN=gatA PE=3 SV=1

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 184/413 (44%), Gaps = 54/413 (13%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PLTG+  A+ DLF  +   T       A     A   +T+V+   + GA  IGKT +DEF
Sbjct: 66  PLTGIPMALKDLFCTKRLNTTCASKMLANFQ--APYDATIVTKFKQNGAIIIGKTNMDEF 123

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +  N ++ +  NP    ++PGGSS G+A AVA  LV F++G DT G +R P+AFCG
Sbjct: 124 AMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGSLVPFAIGSDTGGSIRQPAAFCG 183

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIA 236
           I G +P+YG VS  G++  ++SLD  G FA+  + L  + H +         S  ++I  
Sbjct: 184 ISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKDSTSADRVI-- 241

Query: 237 DDCFELLKIPADRV----------------VQVVIKSTEKLFGRQVLKHENLGE---YFD 277
            D    +K P D++                +Q  I    KLF       ENLG      D
Sbjct: 242 PDYSTEIKKPVDKIRIGLPSCFFQPQVEKGIQDAIHDAVKLF-------ENLGAEIIEID 294

Query: 278 SKVPSL---------KGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 328
            K+  L              +N    + +R   R     + +  IE +  +       E+
Sbjct: 295 LKLQPLWVPCYYVIACAEASSNLSRYDGIRFGHR---SKSASTLIELITNSRSEGFGNEV 351

Query: 329 GEMLEISETVIE---------NCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKE 379
              +     V+          + + +R  +R  + ++L    +++ PTT     KLG  E
Sbjct: 352 KRRILTGTHVLSSGFFDAYYLHAQKVRRLIRDELITILNSVDVILGPTTPTTAFKLG--E 409

Query: 380 MLSEDYQNRAFSLLSIAS-VSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
            + +  QN    + ++A+ ++G   +++P G+ +K P  +  + +H  +  LL
Sbjct: 410 KIDDPIQNYLADVFTVAANLAGLPAISIPTGFENKLPIGLQLMGKHFSENRLL 462

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Legionella pneumophila (strain Lens) (taxid: 297245)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A5ICP2|GATA_LEGPC Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Legionella pneumophila (strain Corby) GN=gatA PE=3 SV=1

 Score =  110 bits (274), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 185/413 (44%), Gaps = 54/413 (13%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PLTG+  A+ DLF  +   T       A     A   +T+V+   + GA  IGKT +DEF
Sbjct: 66  PLTGIPMALKDLFCTKRLNTTCASKMLANFQ--APYDATIVTKFKQNGAIIIGKTNMDEF 123

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +  N ++ +  NP    ++PGGSS G+A AVA +LV F++G DT G +R P+AFCG
Sbjct: 124 AMGSSNENSYFGSVKNPWDRERVPGGSSGGSAAAVAGNLVPFAIGSDTGGSIRQPAAFCG 183

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIA 236
           I G +P+YG VS  G++  ++SLD  G FA+  + L  + H +         S  ++I  
Sbjct: 184 ISGIKPTYGLVSRYGMVAFASSLDQAGPFAKSAEDLAMILHCIAGFDSKDSTSVDRVI-- 241

Query: 237 DDCFELLKIPADRV----------------VQVVIKSTEKLFGRQVLKHENLGE---YFD 277
            D    +K P D++                +Q  I    KLF       ENLG      D
Sbjct: 242 PDYSAEIKKPVDKIRIGLPSCFFQPQVEKGIQDAIHDAVKLF-------ENLGAEIIEID 294

Query: 278 SKVPSL---------KGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI 328
            K+  L              +N    + +R   R     + +  IE +  +       E+
Sbjct: 295 LKLQPLWVPCYYVIACAEASSNLSRYDGIRFGHR---SKSASTLIELITNSRSEGFGNEV 351

Query: 329 GEMLEISETVIE---------NCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKE 379
              +     V+          + + +R  +R  + + L    +++ PTT     KLG  E
Sbjct: 352 KRRILTGTHVLSTGFFNAYYLHAQKVRRLIRDELITTLNSVDVIIGPTTPTTAFKLG--E 409

Query: 380 MLSEDYQNRAFSLLSIAS-VSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
            +++  QN    + ++A+ ++G   +++P G+ +K P  +  + +H  +  LL
Sbjct: 410 KINDPIQNYLADVFTVAANLAGLPAISIPTGFENKLPIGLQLMGKHFSESRLL 462

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Legionella pneumophila (strain Corby) (taxid: 400673)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	580
225456155	590	PREDICTED: translocon at the outer membr	0.998	0.981	0.789	0.0
255579275	589	amidase, putative [Ricinus communis] gi|	0.996	0.981	0.767	0.0
224135565	592	amidase family protein [Populus trichoca	0.996	0.976	0.758	0.0
224118646	593	amidase family protein [Populus trichoca	0.996	0.974	0.759	0.0
449497473	591	PREDICTED: translocon at the outer membr	0.998	0.979	0.747	0.0
357521651	594	Glutamyl-tRNA(Gln) amidotransferase subu	0.996	0.973	0.724	0.0
449439139	585	PREDICTED: LOW QUALITY PROTEIN: transloc	0.987	0.979	0.736	0.0
356512970	587	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.962	0.950	0.707	0.0
356524688	591	PREDICTED: glutamyl-tRNA(Gln) amidotrans	0.962	0.944	0.727	0.0
75336680	593	RecName: Full=Translocon at the outer me	0.998	0.976	0.706	0.0

>gi|225456155|ref|XP_002282402.1| PREDICTED: translocon at the outer membrane of chloroplasts 64 [Vitis vinifera] gi|297734325|emb|CBI15572.3| unnamed protein product [Vitis vinifera]

 Score =  874 bits (2257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 465/589 (78%), Positives = 521/589 (88%), Gaps = 10/589 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS SANLWVLLGLGLAG+LLMT+KLKK I++DFGAF+++LQLLPPPQP PPKAPHPLT 
Sbjct: 1   MASSSANLWVLLGLGLAGVLLMTRKLKKTIREDFGAFVQRLQLLPPPQPAPPKAPHPLTN 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           LSFAVSD+FDIEGYVTGFG+P+WARTH  ASRTS VVS LVEGGATC GKTVVDE AYSI
Sbjct: 61  LSFAVSDVFDIEGYVTGFGNPDWARTHDTASRTSPVVSALVEGGATCTGKTVVDEMAYSI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           NG NKHY TPTNPAAPS++PGGSSSGAAVAVAA+ VDFSLG+DTVGGVRVP+AFCG++GF
Sbjct: 121 NGENKHYGTPTNPAAPSRIPGGSSSGAAVAVAANFVDFSLGLDTVGGVRVPAAFCGVIGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+GAVSHMGII +S+SLDTVGWFA+DP ILR VGHVLLQL +A QRSPRQII ADDCF
Sbjct: 181 RPSHGAVSHMGIIHVSSSLDTVGWFAKDPSILRRVGHVLLQLTYAVQRSPRQIIFADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH--KTNGELKN--- 295
           + L+IP DRV QVV+KSTEKLFGRQVLK ENL  Y DSKVPSLK FH  KTNGE +N   
Sbjct: 241 QSLRIPVDRVYQVVLKSTEKLFGRQVLKRENLENYLDSKVPSLKAFHSQKTNGETRNSLI 300

Query: 296 -----VMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
                +M  +QR+EFK+NH EWI SVKP LD  IS+++ ++LE+++T IENC+S R E+R
Sbjct: 301 RSLVKIMHCLQRHEFKHNHEEWINSVKPILDASISSQLHDVLEVADTEIENCQSSRMEIR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
           SA++SLLKDDGILV PT A PPPKLGGKE LSE+YQNR   LLSIAS+SGCCQVTVPLG 
Sbjct: 361 SALNSLLKDDGILVIPTVADPPPKLGGKESLSEEYQNRTLGLLSIASMSGCCQVTVPLGL 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           YDK P SVSF+ARHGGDRFLLDTVQ MYASLQEQADIA KSKLS+N  +++ SAEIAKEK
Sbjct: 421 YDKYPVSVSFMARHGGDRFLLDTVQTMYASLQEQADIAAKSKLSSNAVDRETSAEIAKEK 480

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQA+KDKQW KA+ FYTEAIKL+GNNATYYSNRAAAYLE GSFLQAEADCT+AINLDKK
Sbjct: 481 GNQAFKDKQWQKAVGFYTEAIKLSGNNATYYSNRAAAYLEMGSFLQAEADCTEAINLDKK 540

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579
           NVKAYLRRGTAREMLGYYK+AIEDF YALVLEPTNKRASLSADRL+K+F
Sbjct: 541 NVKAYLRRGTAREMLGYYKDAIEDFRYALVLEPTNKRASLSADRLKKLF 589

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579275|ref|XP_002530483.1| amidase, putative [Ricinus communis] gi|223529980|gb|EEF31906.1| amidase, putative [Ricinus communis]

 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/589 (76%), Positives = 516/589 (87%), Gaps = 11/589 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           M S  ANLWVLLGLG+AGILL+TKKLKK I++DFGAF++KLQLLPPP P PPKAPHPLTG
Sbjct: 1   MGSNPANLWVLLGLGIAGILLVTKKLKKVIREDFGAFVQKLQLLPPPPPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSD+FDIEGYVTGFGHP+WARTH AAS+TS VVS LVEGGATCIGKTVVDE AYSI
Sbjct: 61  LTFAVSDVFDIEGYVTGFGHPDWARTHEAASQTSLVVSALVEGGATCIGKTVVDELAYSI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           NG N+HY TPTNPA P+++PGGSSSGAAVAVAA+LVDFSLG+DTVGGVRVP+ FCGI+GF
Sbjct: 121 NGENEHYGTPTNPAVPARVPGGSSSGAAVAVAANLVDFSLGVDTVGGVRVPAGFCGIIGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPSYGA+ + GI+PIS SLDTVGWFARDP ++R VGH+LLQLPF  QR+P+QIIIADDCF
Sbjct: 181 RPSYGAIPNTGILPISASLDTVGWFARDPNVIRRVGHLLLQLPFGVQRNPKQIIIADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH--KTNGELK---- 294
           +LLKIP DR+ QVVIKSTEK+FGRQVL+HE L +   S+V SLK  H  KTNGEL+    
Sbjct: 241 QLLKIPVDRIAQVVIKSTEKIFGRQVLRHEILEDVLFSRVRSLKLLHDQKTNGELRTSSI 300

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               N+MRL+ RYEF++NH EWI   KP +D +ISA+I E+++I +T IE  KSIR EMR
Sbjct: 301 RLLANIMRLLHRYEFRHNHEEWINIEKPNVDHNISAQIHEIVDIPDTEIEIFKSIRQEMR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
           +AI+SLLKDDGILV PTTA+ PPKLGGK+MLSEDYQ   FSLLSIAS+SGCCQVT+PLG 
Sbjct: 361 AAINSLLKDDGILVIPTTAHLPPKLGGKDMLSEDYQILLFSLLSIASLSGCCQVTIPLGL 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           Y+KCP SVSFIARHGGDRFL+DTVQNMY+SLQEQ D+  K K  T+  NQ++SAE+AKEK
Sbjct: 421 YEKCPVSVSFIARHGGDRFLMDTVQNMYSSLQEQVDMLAKPKSHTSD-NQERSAEMAKEK 479

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYK+KQW KAIS+YTEAIKLNG NATYYSNRAAAYLE GSFLQAEADCTKAINLDKK
Sbjct: 480 GNQAYKEKQWQKAISYYTEAIKLNGKNATYYSNRAAAYLELGSFLQAEADCTKAINLDKK 539

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579
           NVKAYLRRGTAREM+GYYKEAIEDF YALVLEPTNKRA+LSA+RLRK+F
Sbjct: 540 NVKAYLRRGTAREMIGYYKEAIEDFQYALVLEPTNKRAALSAERLRKMF 588

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135565|ref|XP_002322105.1| amidase family protein [Populus trichocarpa] gi|222869101|gb|EEF06232.1| amidase family protein [Populus trichocarpa]

 Score =  868 bits (2244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/589 (75%), Positives = 511/589 (86%), Gaps = 11/589 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS  ANLWVLLGLGLAGI L TKK KK +++DFGAFI KLQLLPPPQP PPKAPHPLTG
Sbjct: 1   MASNPANLWVLLGLGLAGIFLFTKKFKKVLREDFGAFIHKLQLLPPPQPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSDLFDIEGYVTGFGHP+WA+TH AASRTS VVSTLVEGGATC+GKTV+DE AYSI
Sbjct: 61  LTFAVSDLFDIEGYVTGFGHPDWAKTHEAASRTSVVVSTLVEGGATCVGKTVIDELAYSI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
            G NKHY TPTNP  P+++PGGSSSGAAVAVAA+LVDFSLG+DTVGGVRVP+ FCGI+GF
Sbjct: 121 TGENKHYGTPTNPVEPARVPGGSSSGAAVAVAANLVDFSLGVDTVGGVRVPAGFCGIIGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPSYGA+S +G++P+S SLDTVGWFA+DP ILR VGHVLLQ  F  QRSPRQII+ADDCF
Sbjct: 181 RPSYGAISKIGVLPVSVSLDTVGWFAKDPNILRRVGHVLLQSAFGGQRSPRQIIMADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH--KTNGELK---- 294
           +LLKIP DR+ QVV+KSTEK FGRQ+LKHE L  Y +SKVPSLK FH  KTNGE+K    
Sbjct: 241 QLLKIPVDRIAQVVVKSTEKHFGRQLLKHEILDVYLNSKVPSLKEFHNKKTNGEVKTSSI 300

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               NVM+L+ RYEF++NH EWI +VKP L+P++SA++ E++E+S+  IE CKSIR EMR
Sbjct: 301 RLLANVMQLLHRYEFRSNHEEWINTVKPILEPNLSAQMNEIMELSDAEIELCKSIREEMR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
           SAI+SLLKDDGILV PTTAY PPKLGGKE+LSE+YQ+ +F LLSIAS+SGCCQVTVPLGY
Sbjct: 361 SAINSLLKDDGILVVPTTAYLPPKLGGKEILSEEYQSSSFGLLSIASLSGCCQVTVPLGY 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           Y+KCP SVS IARHG DRFLLDTVQ MY +LQEQA+    SK S+N  +++ SAE+AKEK
Sbjct: 421 YNKCPVSVSLIARHGSDRFLLDTVQTMYKTLQEQAETYVNSK-SSNKDSRENSAEMAKEK 479

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQA+K++QW KAIS+Y EAIKLN  NATYYSNRAAAYLE GSF  AEADC+ AINLDKK
Sbjct: 480 GNQAFKEQQWQKAISYYNEAIKLNDKNATYYSNRAAAYLELGSFQHAEADCSNAINLDKK 539

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579
           NVKAYLRRGTAREMLGYYK+AIEDF YALVLEPTNKRASLSA+RL+KVF
Sbjct: 540 NVKAYLRRGTAREMLGYYKDAIEDFKYALVLEPTNKRASLSAERLQKVF 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118646|ref|XP_002317872.1| amidase family protein [Populus trichocarpa] gi|222858545|gb|EEE96092.1| amidase family protein [Populus trichocarpa]

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/590 (75%), Positives = 509/590 (86%), Gaps = 12/590 (2%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNI-KQDFGAFIEKLQLLPPPQPLPPKAPHPLT 59
           MAS SANLWVLLGLGLAGILLMTKK KK+I +QDFGAFIEKL L+PPPQP PPKAPHPLT
Sbjct: 1   MASNSANLWVLLGLGLAGILLMTKKFKKSIIRQDFGAFIEKLLLVPPPQPPPPKAPHPLT 60

Query: 60  GLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS 119
            L+FAVSDLF+IEGYV+GFGHPEWA+TH AASRTS VVSTLV+GGATC+GKTV+DE AYS
Sbjct: 61  ALTFAVSDLFEIEGYVSGFGHPEWAKTHQAASRTSLVVSTLVDGGATCVGKTVIDELAYS 120

Query: 120 INGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILG 179
           I+G NKHY TP NP  P+++PGGS SGAAVAVAA+LVDFSLG+DTVGGVRVP+ FCG++G
Sbjct: 121 IHGENKHYGTPINPVVPARVPGGSCSGAAVAVAANLVDFSLGVDTVGGVRVPAGFCGVIG 180

Query: 180 FRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDC 239
           FRPSYGA+S  G++P+S SLDTVGWFA+DP ILR VGHVLLQ  F  QRSPRQII+A+DC
Sbjct: 181 FRPSYGAISKTGVLPVSASLDTVGWFAKDPNILRRVGHVLLQPAFGGQRSPRQIIMAEDC 240

Query: 240 FELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH--KTNGELK--- 294
           F+LLKIP DRV QVV+ STEK FGRQVLKHE L  Y +SKVPSLK FH  K NG++K   
Sbjct: 241 FQLLKIPVDRVAQVVVNSTEKHFGRQVLKHEILDVYLNSKVPSLKEFHNKKKNGDVKTSS 300

Query: 295 -----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM 349
                +VM+L+ RYEF++NH EWI + KP L+PD SA++ E+++ISE  IE CKSIR EM
Sbjct: 301 IRLLAHVMQLLHRYEFRSNHEEWINTEKPILEPDFSAQMNEIMKISEAEIELCKSIREEM 360

Query: 350 RSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLG 409
           R AI+SLLKDDGILV PT AY PPKL GKE+LSE+Y++ +FSLLSIAS+SGCCQVTVPLG
Sbjct: 361 RLAINSLLKDDGILVVPTMAYLPPKLDGKEILSEEYKSSSFSLLSIASLSGCCQVTVPLG 420

Query: 410 YYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKE 469
           YYDKCP SVS IARHG DRFLLDT+Q MYASLQEQA+   KSK S NT + + SAE+AKE
Sbjct: 421 YYDKCPVSVSLIARHGNDRFLLDTLQTMYASLQEQAETHVKSK-SRNTDSGENSAEMAKE 479

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           KGNQA+K+KQW KAIS+Y EAIKLN  NATYYSNRAAAYLE GSF QAEADC+KAINLDK
Sbjct: 480 KGNQAFKEKQWKKAISYYNEAIKLNDKNATYYSNRAAAYLELGSFHQAEADCSKAINLDK 539

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579
           KNVKAYLRRGTAREMLGYYK+AIEDF YALVLEPTNKRASLSA+RLRKVF
Sbjct: 540 KNVKAYLRRGTAREMLGYYKDAIEDFKYALVLEPTNKRASLSAERLRKVF 589

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497473|ref|XP_004160411.1| PREDICTED: translocon at the outer membrane of chloroplasts 64-like [Cucumis sativus]

 Score =  823 bits (2125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/589 (74%), Positives = 506/589 (85%), Gaps = 10/589 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS SANLWVLLGLGLAGILLMTKKLKK I++DFGAFIEK QLLPPPQP PPKAPHPLTG
Sbjct: 1   MASNSANLWVLLGLGLAGILLMTKKLKKAIREDFGAFIEKFQLLPPPQPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSD+F+IEG+VTGFGHP+WA+TH AASRTS VVS LVEGGATCIGKTV +E +  I
Sbjct: 61  LTFAVSDVFEIEGHVTGFGHPDWAKTHDAASRTSPVVSALVEGGATCIGKTVTNELSMGI 120

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NK+Y+TPTNPA+ S++PGGSSSGAAVAVAA+LVDFSLGIDTVG VR+P++FCGILGF
Sbjct: 121 SGENKYYETPTNPASHSKVPGGSSSGAAVAVAANLVDFSLGIDTVGDVRIPASFCGILGF 180

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+G+VS +GI+P+S SLDTVG FA+DP +LR VGHVLLQLP+A QR+PRQIIIADDCF
Sbjct: 181 RPSHGSVSQVGIVPVSLSLDTVGMFAKDPNVLRRVGHVLLQLPYAVQRNPRQIIIADDCF 240

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK---- 294
           +LLKIP DR+ Q V KSTEKLFGRQ LKHENLG Y  SKVP+LK     KTNG L     
Sbjct: 241 QLLKIPVDRITQAVTKSTEKLFGRQALKHENLGSYLSSKVPNLKELIGKKTNGNLNSASI 300

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               N+M+ ++R EFK NH EWI+SVKP LD  +  ++ E LEIS+T+IE  KS+RNEMR
Sbjct: 301 RVLANLMQTVERIEFKGNHGEWIDSVKPDLDSALMEQLNEKLEISDTMIEKFKSVRNEMR 360

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            AI+SLLKDDG+LV PTT  PPPKLGGKE+ SE+YQ R FS LSIAS+SGCCQVT+PLG+
Sbjct: 361 MAINSLLKDDGVLVIPTTVDPPPKLGGKEIFSEEYQTRVFSSLSIASISGCCQVTLPLGF 420

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           +D CP SVSF+ARHG DRFLLD VQ MY SLQE+A+ A+KSK S N  +Q+QSAEIAKEK
Sbjct: 421 HDSCPVSVSFLARHGADRFLLDIVQTMYKSLQEEAEAASKSKFSKNAVSQEQSAEIAKEK 480

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYK+KQW KAI  YTEAIKLN  NATYYSNRAAAYLE G F QAEADC+KAI+LDKK
Sbjct: 481 GNQAYKEKQWEKAIGCYTEAIKLNSRNATYYSNRAAAYLELGRFHQAEADCSKAIDLDKK 540

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579
           NVK+YLRRGTAREMLG+YKEAIEDFS+ALVLEPTNKRAS+SA+RLRK+F
Sbjct: 541 NVKSYLRRGTAREMLGFYKEAIEDFSHALVLEPTNKRASISAERLRKLF 589

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521651|ref|XP_003631114.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula] gi|355525136|gb|AET05590.1| Glutamyl-tRNA(Gln) amidotransferase subunit A [Medicago truncatula]

 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/589 (72%), Positives = 497/589 (84%), Gaps = 11/589 (1%)

Query: 2   ASQSAN-LWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           +SQS+N LWVLLGLGLAGI ++T+KLK+ +K+D GAFI+KLQLLPPP P PPKAPHPLT 
Sbjct: 6   SSQSSNNLWVLLGLGLAGIYVLTRKLKQTVKEDLGAFIQKLQLLPPPPPAPPKAPHPLTS 65

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FA+SDLFDIEG+V+ FGHPEWARTH  AS TS  VSTLV+ GATCI  TV+D  +Y I
Sbjct: 66  LTFAISDLFDIEGHVSTFGHPEWARTHEPASSTSPAVSTLVQSGATCIATTVLDNLSYGI 125

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKH+ TP+NPA P+++PGGSSSGAAVAVAA+ VDFSLG+DT GGVRVP+ FCGILGF
Sbjct: 126 SGENKHFGTPSNPAIPARVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 185

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+GAVSH GIIP+STSLDTVGWFA+DP ILR VGH+LLQ PF  QRSPRQIIIADDCF
Sbjct: 186 RPSHGAVSHGGIIPVSTSLDTVGWFAKDPDILRRVGHILLQAPFVMQRSPRQIIIADDCF 245

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK---- 294
           + L +P DR  QVVIK+TEKLFG+QVLKH NL  Y  SKVPSLK     K NGELK    
Sbjct: 246 QHLNVPLDRSSQVVIKATEKLFGKQVLKHINLEGYIRSKVPSLKACSGQKANGELKSSSL 305

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               N+M+ +QR+EF + H+EW+  VKP L P +SA++ E  ++SE  +EN KS+R+EMR
Sbjct: 306 ILLANIMQFLQRHEFGHMHDEWMSIVKPDLHPAVSAQLHEKFDVSEVEMENSKSVRSEMR 365

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            A++SLLKD+GILV PT A PPPKLGGKE+LS+DYQ+RAFSLLSIAS+SGCCQVTVPLG+
Sbjct: 366 VAVNSLLKDEGILVIPTVADPPPKLGGKEILSQDYQSRAFSLLSIASISGCCQVTVPLGF 425

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           YDK P SVS IAR+GGDRFLLDT++ MY SLQEQADIA  SK S N  +++QSAEIAKEK
Sbjct: 426 YDKYPVSVSLIARYGGDRFLLDTLKTMYTSLQEQADIAATSKASRNVVSKEQSAEIAKEK 485

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYKDKQW KAI FYTEAIKL GNNATYYSNRA AYLE GS+LQAEADCTKAI+LDKK
Sbjct: 486 GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEADCTKAISLDKK 545

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579
           +VKAY RRGTAREMLGYYKEAI+DF YALVLEPTNKRA+ +A+RLRK+F
Sbjct: 546 SVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRAASAAERLRKLF 594

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439139|ref|XP_004137345.1| PREDICTED: LOW QUALITY PROTEIN: translocon at the outer membrane of chloroplasts 64-like [Cucumis sativus]

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/589 (73%), Positives = 499/589 (84%), Gaps = 16/589 (2%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS SANLWVLLGLGLAGILLMTKKLKK I++DFGAFIEK QLLPPPQP PPKAPHPLTG
Sbjct: 1   MASNSANLWVLLGLGLAGILLMTKKLKKAIREDFGAFIEKFQLLPPPQPAPPKAPHPLTG 60

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FAVSD+F+IEG+VTGFGHP+WA+TH AA       S LVEGGATCIGKTV +E +  I
Sbjct: 61  LTFAVSDVFEIEGHVTGFGHPDWAKTHDAAX------SALVEGGATCIGKTVTNELSMGI 114

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKHY+TPTNPA+ S++PGGSSSGAAVAVAA+LVDFSLGIDTVG VR+P++FCGILGF
Sbjct: 115 SGENKHYETPTNPASHSKVPGGSSSGAAVAVAANLVDFSLGIDTVGDVRIPASFCGILGF 174

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+G+VS +GI+P+S SLDTVG FA+DP +LR VGHVLLQLP+A QR+PRQIIIADDCF
Sbjct: 175 RPSHGSVSQVGIVPVSLSLDTVGMFAKDPNVLRRVGHVLLQLPYAVQRNPRQIIIADDCF 234

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK---- 294
           +LLKIP DR+ Q V KSTEKLFGRQ LKHENLG Y  SKVP+LK     KTNG L     
Sbjct: 235 QLLKIPVDRITQAVTKSTEKLFGRQALKHENLGSYLSSKVPNLKELIGKKTNGNLNSASI 294

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               N+M+ ++R EFK NH EWI+SVKP LD  +  ++ E LEIS+T+IE  KS+RNEMR
Sbjct: 295 RVLANLMQTVERIEFKGNHGEWIDSVKPDLDSALMEQLNEKLEISDTMIEKFKSVRNEMR 354

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            AI+SLLKDDG+LV PTT   PPKLGGKE+ SE+YQ R FS LSIAS+SGCCQVT+PLG+
Sbjct: 355 MAINSLLKDDGVLVIPTTVDSPPKLGGKEIFSEEYQTRVFSSLSIASISGCCQVTLPLGF 414

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           +D CP SVSF+ARHG DRFLLD VQ MY SLQE+A+ A+KSK S N  +Q+QSAEIAKEK
Sbjct: 415 HDSCPVSVSFLARHGADRFLLDIVQTMYRSLQEEAEAASKSKFSKNAVSQEQSAEIAKEK 474

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYK+KQW KAI  YTEAIKLN  NATYYSNRAAAYLE G F QAEADC+KAI+LDKK
Sbjct: 475 GNQAYKEKQWEKAIGCYTEAIKLNSRNATYYSNRAAAYLELGRFHQAEADCSKAIDLDKK 534

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579
           NVK+YLRRGTAREMLG+YKEAIEDFS+ALVLEPTNKRAS+SA+RLRK+F
Sbjct: 535 NVKSYLRRGTAREMLGFYKEAIEDFSHALVLEPTNKRASISAERLRKLF 583

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512970|ref|XP_003525187.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  803 bits (2074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/568 (70%), Positives = 480/568 (84%), Gaps = 10/568 (1%)

Query: 22  MTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP 81
           +T+KL K++++DFGAFI KLQLLPPPQP PPKAPHPLT L+FA+SDLF I G+V  FGHP
Sbjct: 19  ITRKLNKSVREDFGAFIHKLQLLPPPQPSPPKAPHPLTSLTFALSDLFHIHGHVPSFGHP 78

Query: 82  EWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPG 141
           +WARTH  +S T+  VS LVEGGATC+  TV+D+ A  I G NKH+ TPTNPA P+++PG
Sbjct: 79  DWARTHEPSSSTAPAVSALVEGGATCVATTVLDDLALGIGGENKHFGTPTNPAVPARVPG 138

Query: 142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDT 201
           GSSSGAAVAVAA+ VDF+LGIDT GGVRVP+ FCGILGFRPS+GAVSHMGIIPISTSLDT
Sbjct: 139 GSSSGAAVAVAANFVDFALGIDTTGGVRVPAGFCGILGFRPSHGAVSHMGIIPISTSLDT 198

Query: 202 VGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKL 261
           VGWFA+DP ILR VGH+LLQ PF  QRSPRQI+IADDCF+ + +P DR  QVV+K+TEKL
Sbjct: 199 VGWFAKDPNILRRVGHILLQAPFVMQRSPRQIVIADDCFQHINVPLDRSSQVVVKATEKL 258

Query: 262 FGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK--------NVMRLIQRYEFKNNHNE 311
           FGRQVLKH NLG+Y  S+VPSLKG    K NGE+K        ++M+ +QR+EF+  H++
Sbjct: 259 FGRQVLKHINLGDYLSSRVPSLKGCSGQKPNGEVKASSLKLLAHIMQFLQRHEFRLKHDD 318

Query: 312 WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYP 371
           W+ +VKP L P +SA++ E  E+S+  IEN KS+R+EMR+A++SLLKD+GILV PT A P
Sbjct: 319 WMNTVKPDLHPGVSAQLHEKFEVSDAEIENSKSVRSEMRAAVNSLLKDEGILVIPTVADP 378

Query: 372 PPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
           PPKLGGKE+LSEDYQ+RAFSLLSIAS+SGCCQV++PLG+YDK P SVS IARHGGDRFLL
Sbjct: 379 PPKLGGKEILSEDYQSRAFSLLSIASISGCCQVSIPLGFYDKYPVSVSLIARHGGDRFLL 438

Query: 432 DTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491
           DT+Q +Y +LQEQADIA+KSK S N  +++QSAEIAKEKGNQAYKDKQW KAI FYTEAI
Sbjct: 439 DTLQTVYTTLQEQADIASKSKSSGNVVSKEQSAEIAKEKGNQAYKDKQWQKAIGFYTEAI 498

Query: 492 KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551
           KL G+NATYYSNRA AYLE  S+LQA  DCTKAI+LDKKNVKAY RRGTAR+MLGYYKEA
Sbjct: 499 KLCGDNATYYSNRAQAYLELESYLQAVEDCTKAISLDKKNVKAYFRRGTARQMLGYYKEA 558

Query: 552 IEDFSYALVLEPTNKRASLSADRLRKVF 579
           I+DF +ALVLEPTNKRA+ +A+RLRK+F
Sbjct: 559 IDDFKHALVLEPTNKRAASAAERLRKLF 586

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524688|ref|XP_003530960.1| PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A-like [Glycine max]

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/568 (72%), Positives = 486/568 (85%), Gaps = 10/568 (1%)

Query: 22  MTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP 81
           +T+KLKK++++D GAFIEKLQLLPPPQP PPKAPHPLT L+FA+SDLFDIEG+V+ FGHP
Sbjct: 23  ITRKLKKSVRKDLGAFIEKLQLLPPPQPAPPKAPHPLTALTFALSDLFDIEGHVSTFGHP 82

Query: 82  EWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPG 141
           EWARTH  AS T+  VS LVEGGATC+  TV+D+ A  I G NKHY TPTNPA P+++PG
Sbjct: 83  EWARTHEPASSTAPAVSALVEGGATCVATTVLDDLALGIGGENKHYGTPTNPAVPARVPG 142

Query: 142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDT 201
           GSSSGAAVAVAAD VDF+LGIDTVGGVRVP+ FCGILGFRPS+GAVSH+GIIPISTSLDT
Sbjct: 143 GSSSGAAVAVAADFVDFALGIDTVGGVRVPAGFCGILGFRPSHGAVSHLGIIPISTSLDT 202

Query: 202 VGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKL 261
           VGWFA+DP ILR VGH+LLQ PFA QRSPRQI+IADDCF+ + +P DR  QVV+K+TEKL
Sbjct: 203 VGWFAKDPNILRRVGHILLQAPFAMQRSPRQIVIADDCFQHINVPLDRSSQVVVKTTEKL 262

Query: 262 FGRQVLKHENLGEYFDSKVPSLKGF--HKTNGELK--------NVMRLIQRYEFKNNHNE 311
           FGRQVLKH NLG+Y  S+VPSLKG    KTNGE+K        N+M+ +QR+EF+  H+E
Sbjct: 263 FGRQVLKHINLGDYLSSRVPSLKGCSGQKTNGEVKASALKLLANIMQSLQRHEFRLKHDE 322

Query: 312 WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYP 371
           W+ +VKP L P +SA++ E  E+S+  IEN KS+R+EM +A++SLLKD+GILV PT A P
Sbjct: 323 WMNTVKPELHPGVSAQLHEKFEVSDAEIENSKSVRSEMCAAVNSLLKDEGILVIPTVADP 382

Query: 372 PPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL 431
           PPKLGGKE+LSEDYQ+RAFSLLSIAS+SGCCQV++PLG+YDK P SVS IARHGGDRFLL
Sbjct: 383 PPKLGGKEILSEDYQSRAFSLLSIASISGCCQVSIPLGFYDKYPVSVSLIARHGGDRFLL 442

Query: 432 DTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI 491
           DT+Q +Y +LQEQADIA+KSK S N  +++QSAEIAKEKGNQAYKDKQW KAI FYTEAI
Sbjct: 443 DTLQTVYTTLQEQADIASKSKSSGNAVSKEQSAEIAKEKGNQAYKDKQWQKAIGFYTEAI 502

Query: 492 KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551
           KL G+NATYYSNRA AYL  GS+LQA  DCTKAI+LDKKNVKAY RRGTAREMLGYYKEA
Sbjct: 503 KLCGDNATYYSNRAQAYLGLGSYLQAVEDCTKAISLDKKNVKAYFRRGTAREMLGYYKEA 562

Query: 552 IEDFSYALVLEPTNKRASLSADRLRKVF 579
           I+DF +ALVLEPTNKRA+ +A+RLRK+F
Sbjct: 563 IDDFKHALVLEPTNKRAASAAERLRKLF 590

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75336680|sp|Q9MUK5.1|TOC64_PEA RecName: Full=Translocon at the outer membrane of chloroplasts 64 gi|7453538|gb|AAF62870.1|AF179282_1 Toc64 [Pisum sativum]

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/589 (70%), Positives = 491/589 (83%), Gaps = 10/589 (1%)

Query: 1   MASQSANLWVLLGLGLAGILLMTKKLKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTG 60
           MAS S+ +WV+LGLGLAGI ++T+KL + +K+DFGAF+ KL+LLPPP P PPKAPHPL+ 
Sbjct: 4   MASPSSQIWVILGLGLAGIYVLTRKLTQAVKEDFGAFLLKLKLLPPPPPAPPKAPHPLSS 63

Query: 61  LSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI 120
           L+FA+SD+FDIEG+V+ FGHPEWARTH  AS T++ VS LVE GATCIG TVVDE AY I
Sbjct: 64  LNFAISDIFDIEGHVSTFGHPEWARTHEPASSTASAVSALVESGATCIGTTVVDELAYGI 123

Query: 121 NGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF 180
           +G NKH+ TPTNPA P+++PGGSSSGAAVAVAA+ VDFSLG+DT GGVRVP+ FCGILGF
Sbjct: 124 SGENKHFGTPTNPAVPNRVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 183

Query: 181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
           RPS+GAVSH+GIIP+STSLDTVGWFA+DP +LR VGH+LLQ PF  QR+PRQIIIADDCF
Sbjct: 184 RPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVLRRVGHILLQAPFVMQRNPRQIIIADDCF 243

Query: 241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKG--FHKTNGELK---- 294
           + L +P DR  QVVIK+TEKLFG+QVLKH N  +Y  SKV SLK     K+NG LK    
Sbjct: 244 QHLNVPLDRTSQVVIKATEKLFGKQVLKHINFEDYISSKVSSLKACSIQKSNGVLKSSSL 303

Query: 295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               NVM+ +QR+EF++ H+EW+  VKP L P +SA++ E  E+SE  IEN KS+R+E+R
Sbjct: 304 KLLANVMQSLQRHEFEHTHSEWMSIVKPDLHPAVSAQLHEKFEVSELEIENSKSVRSELR 363

Query: 351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
            A++SLLKD+G+LV PT A PPPKLGGKE LS DYQ+RA SLLSIAS+SGCCQVTVPLG+
Sbjct: 364 VAVNSLLKDEGVLVIPTVADPPPKLGGKEFLSHDYQSRALSLLSIASISGCCQVTVPLGF 423

Query: 411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
           +DK P SVS IARHGGDRFLLDT++ MY  LQEQADIA  SK S +  +++QSAEI+KEK
Sbjct: 424 FDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQEQADIAAPSKSSKSVVSKEQSAEISKEK 483

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           GNQAYKDKQW KAI FYTEAIKL GNNATYYSNRA AYLE GS+LQAE DCT AI+ DKK
Sbjct: 484 GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKK 543

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579
           NVKAY RRGTAREMLGYYKEAI+DF YALVLEPTNKRA+ SA+RLRK+F
Sbjct: 544 NVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRAASSAERLRKLF 592

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	580
TAIR|locus:2088600	589	TOC64-III "translocon at the o	0.994	0.979	0.640	1e-196
UNIPROTKB|Q9MUK5	593	TOC64 "Translocon at the outer	0.998	0.976	0.624	1.3e-194
TAIR|locus:2184757	603	TOC64-V "AT5G09420" [Arabidops	0.955	0.918	0.497	3.7e-142
TAIR|locus:2036029	425	AMI1 "AT1G08980" [Arabidopsis	0.696	0.950	0.465	6.8e-95
UNIPROTKB|Q60AB7	341	MCA0950 "Amidase family protei	0.565	0.961	0.311	2.4e-37
ZFIN|ZDB-GENE-050327-75	481	zgc:110801 "zgc:110801" [Danio	0.2	0.241	0.413	2.4e-17
TIGR_CMR|DET_1335	486	DET_1335 "glutamyl-tRNA(Gln) a	0.187	0.224	0.376	9.8e-17
MGI|MGI:1277218	660	Rpap3 "RNA polymerase II assoc	0.237	0.209	0.410	1.5e-16
TIGR_CMR|CHY_1102	485	CHY_1102 "glutamyl-tRNA(Gln) a	0.318	0.381	0.310	2.6e-16
UNIPROTKB|Q936X3	457	atzE "Biuret hydrolase" [Pseud	0.246	0.312	0.326	4e-16

TAIR|locus:2088600 TOC64-III "translocon at the outer membrane of chloroplasts 64-III" [Arabidopsis thaliana (taxid:3702)]

 Score = 1905 (675.7 bits), Expect = 1.0e-196, P = 1.0e-196
 Identities = 376/587 (64%), Positives = 439/587 (74%)

Query:     1 MASQSANXXXXXXXXXXXXXXMTKKLKKNIKQDFGAFIEXXXXXXXXXXXXXXXXXXXTG 60
             MASQ+AN              +TKKLKK +++DFGAFI+                   TG
Sbjct:     1 MASQAANLWVLLGLGLAGILMLTKKLKKTVREDFGAFIDKLMLLPPPQPAPPKAPHPLTG 60

Query:    61 LSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSI 120
             L+FAVSD+FDI GYVTGFGHP+W                LVEGGATC+GKTVVDEFA+SI
Sbjct:    61 LTFAVSDVFDITGYVTGFGHPDWVRTHEAASSTSPVVSTLVEGGATCVGKTVVDEFAFSI 120

Query:   121 NGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGF 180
             +G NKHYD+PTNPAAP+++P             + VDF+LGIDTVGGVRVP+ +CG+LGF
Sbjct:   121 SGENKHYDSPTNPAAPTRIPGGACSGAAVAVATNAVDFALGIDTVGGVRVPAGYCGVLGF 180

Query:   181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
             + SYGA+S+ GIIP+S+SLD+VGWFARDP  LR VGHVLLQLPFA QR+PRQII+ADDCF
Sbjct:   181 KSSYGAISNTGIIPVSSSLDSVGWFARDPNTLRRVGHVLLQLPFATQRNPRQIILADDCF 240

Query:   241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKT----NGE---- 292
             +LLKIP DR+ QVV KS EKLFGRQ+LKH+NL  YF++KVPSLK F +T    N +    
Sbjct:   241 QLLKIPVDRITQVVTKSAEKLFGRQLLKHQNLETYFETKVPSLKEFARTKAIANTKVSTS 300

Query:   293 --LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
               L NVM+L+QR+EF  NH +WI +VKPA+DP I +++ E  E++    EN  +IRNE R
Sbjct:   301 RLLANVMQLLQRHEFLQNHGDWINTVKPAIDPVILSQVCENPELTNEETENLNAIRNETR 360

Query:   351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
              AI SLLKDDGILV PT    PPKLG KE+ SEDYQNRA SLLSIAS+SGCCQVTVPLG+
Sbjct:   361 VAIGSLLKDDGILVIPTLPAVPPKLGSKEITSEDYQNRASSLLSIASISGCCQVTVPLGH 420

Query:   411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
             ++KCP SVSFI RHGGDRFLLDTVQ MY SLQE + I T  K S     +++SAEIAKEK
Sbjct:   421 HEKCPISVSFIGRHGGDRFLLDTVQTMYPSLQEYSSIVTDPKSSKKAITKEESAEIAKEK 480

Query:   471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             GNQA+K+K W KAI  Y+EAIKL+ NNATYYSNRAAAYLE G FLQAE DCTKAI LDKK
Sbjct:   481 GNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLELGGFLQAEEDCTKAITLDKK 540

Query:   531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577
             NVKAYLRRGTAREMLG  K AIEDF YALVLEP NKRASLSA+RLRK
Sbjct:   541 NVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNNKRASLSAERLRK 587

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|Q9MUK5 TOC64 "Translocon at the outer membrane of chloroplasts 64" [Pisum sativum (taxid:3888)]

 Score = 1885 (668.6 bits), Expect = 1.3e-194, P = 1.3e-194
 Identities = 368/589 (62%), Positives = 437/589 (74%)

Query:     1 MASQSANXXXXXXXXXXXXXXMTKKLKKNIKQDFGAFIEXXXXXXXXXXXXXXXXXXXTG 60
             MAS S+               +T+KL + +K+DFGAF+                    + 
Sbjct:     4 MASPSSQIWVILGLGLAGIYVLTRKLTQAVKEDFGAFLLKLKLLPPPPPAPPKAPHPLSS 63

Query:    61 LSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSI 120
             L+FA+SD+FDIEG+V+ FGHPEW                LVE GATCIG TVVDE AY I
Sbjct:    64 LNFAISDIFDIEGHVSTFGHPEWARTHEPASSTASAVSALVESGATCIGTTVVDELAYGI 123

Query:   121 NGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGF 180
             +G NKH+ TPTNPA P+++P             + VDFSLG+DT GGVRVP+ FCGILGF
Sbjct:   124 SGENKHFGTPTNPAVPNRVPGGSSSGAAVAVAANFVDFSLGVDTSGGVRVPAGFCGILGF 183

Query:   181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCF 240
             RPS+GAVSH+GIIP+STSLDTVGWFA+DP +LR VGH+LLQ PF  QR+PRQIIIADDCF
Sbjct:   184 RPSHGAVSHVGIIPVSTSLDTVGWFAKDPDVLRRVGHILLQAPFVMQRNPRQIIIADDCF 243

Query:   241 ELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKG--FHKTNGELK---- 294
             + L +P DR  QVVIK+TEKLFG+QVLKH N  +Y  SKV SLK     K+NG LK    
Sbjct:   244 QHLNVPLDRTSQVVIKATEKLFGKQVLKHINFEDYISSKVSSLKACSIQKSNGVLKSSSL 303

Query:   295 ----NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR 350
                 NVM+ +QR+EF++ H+EW+  VKP L P +SA++ E  E+SE  IEN KS+R+E+R
Sbjct:   304 KLLANVMQSLQRHEFEHTHSEWMSIVKPDLHPAVSAQLHEKFEVSELEIENSKSVRSELR 363

Query:   351 SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY 410
              A++SLLKD+G+LV PT A PPPKLGGKE LS DYQ+RA SLLSIAS+SGCCQVTVPLG+
Sbjct:   364 VAVNSLLKDEGVLVIPTVADPPPKLGGKEFLSHDYQSRALSLLSIASISGCCQVTVPLGF 423

Query:   411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEK 470
             +DK P SVS IARHGGDRFLLDT++ MY  LQEQADIA  SK S +  +++QSAEI+KEK
Sbjct:   424 FDKNPVSVSLIARHGGDRFLLDTLKTMYTVLQEQADIAAPSKSSKSVVSKEQSAEISKEK 483

Query:   471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             GNQAYKDKQW KAI FYTEAIKL GNNATYYSNRA AYLE GS+LQAE DCT AI+ DKK
Sbjct:   484 GNQAYKDKQWQKAIGFYTEAIKLCGNNATYYSNRAQAYLELGSYLQAEEDCTTAISFDKK 543

Query:   531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579
             NVKAY RRGTAREMLGYYKEAI+DF YALVLEPTNKRA+ SA+RLRK+F
Sbjct:   544 NVKAYFRRGTAREMLGYYKEAIDDFKYALVLEPTNKRAASSAERLRKLF 592

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2184757 TOC64-V "AT5G09420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1390 (494.4 bits), Expect = 3.7e-142, P = 3.7e-142
 Identities = 281/565 (49%), Positives = 364/565 (64%)

Query:    24 KKLKKNIKQDFGAFIEXXXXXXXXXXXXXXXXXXXTGLSFAVSDLFDIEGYVTGFGHPEW 83
             ++++   ++DFGAF++                   +GL+F++SD FD++ Y+TGFG P+W
Sbjct:    37 RRIRALREEDFGAFLDRFELLPFPPPPPPAAKQSLSGLTFSISDAFDVKDYITGFGCPQW 96

Query:    84 XXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXX 143
                             L++ GATC+GKT++DE  + I G NKHY TP NP  P  +P   
Sbjct:    97 KKTHEAAEKTAVVVTTLLKNGATCVGKTIMDELGFGIIGENKHYGTPINPLMPDNVPGGC 156

Query:   144 XXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVG 203
                       +LVDFSLGIDT GGVRVP+AFCGILGFRPS G VS +G++P S SL+TVG
Sbjct:   157 SSGSAVSVGAELVDFSLGIDTTGGVRVPAAFCGILGFRPSQGTVSSVGVLPNSQSLETVG 216

Query:   204 WFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG 263
             WFA DP +L  VGH LL L     R  R +I ADD FEL  IP  + VQVV K+ E L G
Sbjct:   217 WFASDPSVLCQVGHALLNLSAVTHRRQRSLIFADDLFELSDIPKQKSVQVVRKAIENLSG 276

Query:   264 RQVLKHENLGEYFDSKVPSLKGFHKTNGELKN----------VMRLIQRYEFKNNHNEWI 313
              +  KH N+G+Y  S VPSL  F + +G+ +N          VM  IQR+EFK NH EW 
Sbjct:   277 YKTPKHVNVGQYVASNVPSLAEFCEQSGKSQNSASTLRALSSVMLAIQRHEFKTNHEEWW 336

Query:   314 ESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPP 373
             ++ K  L P  S ++   L+     I++   ++NEMR+ I SLLK+DGILV PT A PPP
Sbjct:   337 QTCKSFLGPRFSNDVVTALKSKNESIKSLYRVKNEMRATIQSLLKEDGILVIPTVADPPP 396

Query:   374 KLGGKEMLS-EDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432
             +L  K   S  ++ +R ++L  IAS+SGCCQVT+PLG +   P SVS +  +GGD+FLLD
Sbjct:   397 RLNTKRNKSLNEFLDRTYALSCIASMSGCCQVTIPLGEHGDRPISVSLLTYYGGDKFLLD 456

Query:   433 TVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492
             T  ++YASLQ+QA +A+     ++T    +++E+ KEKGN AYK KQW KA++FYTEAIK
Sbjct:   457 TTLDVYASLQDQAKLASNLAPVSDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIK 516

Query:   493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
             LNG NATYY NRAAA+LE   F QAE DCTKA+ +DKKNVKAYLRRGTARE L  YKEA 
Sbjct:   517 LNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLIDKKNVKAYLRRGTARESLVRYKEAA 576

Query:   553 EDFSYALVLEPTNKRASLSADRLRK 577
              DF +ALVLEP NK A ++  RLRK
Sbjct:   577 ADFRHALVLEPQNKTAKVAEKRLRK 601

GO:0004040 "amidase activity" evidence=ISS

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2036029 AMI1 "AT1G08980" [Arabidopsis thaliana (taxid:3702)]

 Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
 Identities = 196/421 (46%), Positives = 254/421 (60%)

Query:    33 DFGAFIEXXXXXXXXXXXXXXXXXXXTGLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXX 92
             DFGAFIE                    GL+FA+ D+FD+EG VTGFG+P+W         
Sbjct:     6 DFGAFIEKVTISPTSTSSSPPSLQ---GLTFAIKDIFDVEGRVTGFGNPDWLRTHSAATS 62

Query:    93 XXXXXXXLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXX 152
                    L+E GAT +G T++DE AYSING N HY TP NP A  ++P            
Sbjct:    63 TAPVVSSLLEAGATALGITIMDEMAYSINGENAHYGTPRNPIAFDRVPGGSSSGSAVAVA 122

Query:   153 XDLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 212
               LVDFS+G DT G VRVP+++CGI GFRPS+GAVS +G+ P++ S DTVGWFARD   L
Sbjct:   123 ARLVDFSIGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGLTPMAQSFDTVGWFARDTATL 182

Query:   213 RHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG-RQVLKHEN 271
             + VG VLLQ        P Q+IIADDCF+L  +P D +VQ ++ S EK FG   V+K  N
Sbjct:   183 KRVGCVLLQQHHLNPIEPSQLIIADDCFKLCSVPHDLLVQPLVGSVEKSFGGNTVVKKVN 242

Query:   272 LGEYFDSKVPSLKGFHK-----TNGE--------LKNVMRLIQRYEFKNNHNEWIESVKP 318
             LGEY    VPSLK F       T  E        L + MRL+QR+EFK NH  WI SVKP
Sbjct:   243 LGEYIGQNVPSLKHFMTSDDVTTQQEFCIPSLMALSSSMRLLQRHEFKINHGAWISSVKP 302

Query:   319 ALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGK 378
                P IS  I E +  S+  I++C+S+++E+ +A+S+LL + G+LV PT   PPP L   
Sbjct:   303 EFGPGISERIEEAIRTSDEKIDHCRSVKSELITALSTLLGEKGVLVIPTVPGPPPHLQAN 362

Query:   379 EMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMY 438
                 E +++RAFSLLSIA VSG CQV++PLG ++  P SVS +A++G D FLL  V ++ 
Sbjct:   363 VAALESFRSRAFSLLSIAGVSGFCQVSIPLGLHENLPVSVSLVAKYGSDGFLLSLVDSLA 422

Query:   439 A 439
             A
Sbjct:   423 A 423

GO:0004040 "amidase activity" evidence=ISS;IDA

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=IDA

GO:0016810 "hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds" evidence=IDA

GO:0043864 "indoleacetamide hydrolase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q60AB7 MCA0950 "Amidase family protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 109/350 (31%), Positives = 167/350 (47%)

Query:   101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSL 160
             ++ GA C+GKT  DE A+ + G N  Y TP NPAAP ++P               VDF+L
Sbjct:     7 LQAGAVCLGKTCADELAFGLTGENAFYGTPLNPAAPDRVPGGSSSGSAVAVAAGEVDFAL 66

Query:   161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL 220
             G DT G +R+P++ CGI G RPS+G VS  G+ P++   DTVG FAR+ + L+ V  +LL
Sbjct:    67 GTDTAGSIRLPASNCGIWGMRPSHGGVSVAGVNPLAPGFDTVGAFARNGETLQRVMSLLL 126

Query:   221 QLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKV 280
              +   +  S R  ++ +  F+  + PA R          K FG  VLK   L   F S+ 
Sbjct:   127 NVDPLSTVSGRLWLLQEG-FDAAE-PAVR----------KAFG-PVLKR--LAGSFPSRE 171

Query:   281 PSLKGFHKTNG-----ELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEIS 335
              SL+      G       + V + IQ  E  +    WIES +PAL             + 
Sbjct:   172 ISLRSIDGEAGVSGMDNWRQVFQPIQWAEIWSTLGTWIESARPALGERTRRNFELAKGLD 231

Query:   336 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG--GKEMLSEDYQNRAFSLL 393
               ++    + R   R+A++ +L  + ++  PT   P P  G  G +    DY  R  + +
Sbjct:   232 RRLLPAALARRERYRAALARVLGPEDVICFPTVHAPAPLKGSLGLDRTQGDYFPRVLARM 291

Query:   394 SIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQE 443
             +IA +    Q+++P    +  P  +S +A  G D FL+   Q + A L +
Sbjct:   292 AIAGICRLPQISLPAVEVEGAPVGLSLLAAEGNDAFLMAFAQGVAAVLDD 341

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-050327-75 zgc:110801 "zgc:110801" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 48/116 (41%), Positives = 69/116 (59%)

Query:   463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
             SAE  KEK N  +KDK +  AI +YTEA+ LN  N  YYSNR+ +YL +  +  A AD T
Sbjct:     9 SAEKLKEKANDYFKDKDYENAIKYYTEALDLNPTNPIYYSNRSLSYLRTECYGYALADAT 68

Query:   523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578
             +A+ LDK  +K Y RR T+   LG +K A++D+   + + P +K A +      K+
Sbjct:    69 RALELDKNYLKGYYRRATSNMALGKFKAALKDYETVVRVRPNDKDAKMKYQECNKI 124

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TIGR_CMR|DET_1335 DET_1335 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 204 (76.9 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
 Identities = 41/109 (37%), Positives = 59/109 (54%)

Query:   100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
             L E GA  +GKT +DEFA   +  N  + T  NP   +++P                 FS
Sbjct:   111 LAEEGAVLLGKTNMDEFAMGSSTENSAFFTTHNPWNTAKVPGGSSGGSAACVAASEAVFS 170

Query:   160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
             LG DT G +R P++FC + G +PSYG VS  G++  ++SLD +G F +D
Sbjct:   171 LGSDTGGSIRQPASFCSVTGLKPSYGMVSRYGLVAFASSLDQIGPFTKD 219

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

MGI|MGI:1277218 Rpap3 "RNA polymerase II associated protein 3" [Mus musculus (taxid:10090)]

 Score = 236 (88.1 bits), Expect = 1.5e-16, P = 1.5e-16
 Identities = 57/139 (41%), Positives = 79/139 (56%)

Query:   439 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 498
             A+  E    A +SK  T     +Q A   K+ GN  +K+ ++ +AI  YT  I  +  NA
Sbjct:   260 AAAAESKPAAGESK-PTGGQQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNA 318

Query:   499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 558
                +NRA AYL+   + +AE DCT+AI LD    KA+ RRGTAR  LG   EA +DF   
Sbjct:   319 LLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETV 378

Query:   559 LVLEPTNKRASLSADRLRK 577
             L+LEP NK+A+    R++K
Sbjct:   379 LLLEPGNKQAATELSRIKK 397

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_1102 CHY_1102 "glutamyl-tRNA(Gln) amidotransferase, A subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 212 (79.7 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
 Identities = 60/193 (31%), Positives = 89/193 (46%)

Query:   100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
             L E GA   GKT +DEFA   +  N  +    NP    ++P                  +
Sbjct:   111 LKEAGAVFTGKTNLDEFAMGSSTENSRFFPTRNPWDLERVPGGSSGGSAASVAAGEAVVA 170

Query:   160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---DPKILRHV- 215
             LG DT G +R P+AFCGI+G +P+YGAVS  G++  ++SLD +G FAR   D  +L +V 
Sbjct:   171 LGSDTGGSIRQPAAFCGIVGLKPTYGAVSRYGLVAFASSLDQIGPFARTVEDAALLLNVI 230

Query:   216 -GHVLLQLPFAAQRSPRQIIIADDCFELLKI--PADRVVQVVIKSTEKLFGRQVLKHENL 272
              GH       A    P  +   +   + LKI  P +  +  +    +K     +   E+L
Sbjct:   231 AGHDPKDSTSADIEYPDYLSFLNQDIKGLKIGLPKEYFIDGIDAGVKKAIDDAIKVLESL 290

Query:   273 GEYFDS-KVPSLK 284
             G  F+   +P  K
Sbjct:   291 GAVFEEVSLPHTK 303

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|Q936X3 atzE "Biuret hydrolase" [Pseudomonas sp. ADP (taxid:47660)]

 Score = 203 (76.5 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
 Identities = 47/144 (32%), Positives = 64/144 (44%)

Query:    60 GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYS 119
             GL +AV +LFDIEG VT     +                 L   GA  +G   +DEFAY 
Sbjct:    68 GLPYAVKNLFDIEG-VTTLAGSKINRTLPPARADAVLVQRLKAAGAVLLGGLNMDEFAYG 126

Query:   120 INGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILG 179
                 N HY    NP    ++                V  SLG DT G +RVP++ CG+ G
Sbjct:   127 FTTENTHYGPTRNPHDTGRIAGGSSGGSGAAIAAGQVPLSLGSDTNGSIRVPASLCGVWG 186

Query:   180 FRPSYGAVSHMGIIPISTSLDTVG 203
              +P++G +S  G  P   S+D +G
Sbjct:   187 LKPTFGRLSRRGTYPFVHSIDHLG 210

GO:0018750 "biuret amidohydrolase activity" evidence=IDA

GO:0019381 "atrazine catabolic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LVH5	OE64C_ARATH	No assigned EC number	0.7274	0.9948	0.9796	yes	no
Q9MUK5	TOC64_PEA	No assigned EC number	0.7062	0.9982	0.9763	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	580
PLN02722	422	PLN02722, PLN02722, indole-3-acetamide amidohydrol	0.0
PRK08310	395	PRK08310, PRK08310, amidase; Provisional	1e-121
COG0154	475	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransf	3e-63
pfam01425	431	pfam01425, Amidase, Amidase	3e-54
PRK09201	465	PRK09201, PRK09201, amidase; Provisional	1e-42
TIGR00132	460	TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) a	3e-42
PRK07056	454	PRK07056, PRK07056, amidase; Provisional	4e-41
PRK06102	452	PRK06102, PRK06102, hypothetical protein; Provisio	1e-40
TIGR02715	452	TIGR02715, amido_AtzE, amidohydrolase, AtzE family	9e-40
PRK00012	459	PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransf	3e-38
PRK08186	600	PRK08186, PRK08186, allophanate hydrolase; Provisi	2e-37
TIGR02713	561	TIGR02713, allophanate_hyd, allophanate hydrolase	7e-37
PRK05962	424	PRK05962, PRK05962, amidase; Validated	1e-32
PRK07488	472	PRK07488, PRK07488, indole acetimide hydrolase; Va	7e-32
PRK07139	439	PRK07139, PRK07139, amidase; Provisional	3e-27
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-24
PRK07235	502	PRK07235, PRK07235, amidase; Provisional	6e-24
PRK12470	462	PRK12470, PRK12470, amidase; Provisional	6e-23
PRK06170	490	PRK06170, PRK06170, amidase; Provisional	8e-22
PRK07486	484	PRK07486, PRK07486, amidase; Provisional	5e-21
PRK06169	466	PRK06169, PRK06169, putative amidase; Provisional	6e-21
PRK08137	497	PRK08137, PRK08137, amidase; Provisional	3e-19
PRK06707	536	PRK06707, PRK06707, amidase; Provisional	1e-18
PRK06828	491	PRK06828, PRK06828, amidase; Provisional	1e-17
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-17
PRK06061	483	PRK06061, PRK06061, amidase; Provisional	8e-17
PRK07487	469	PRK07487, PRK07487, amidase; Provisional	2e-15
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	2e-15
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	4e-14
PRK11910	615	PRK11910, PRK11910, amidase; Provisional	6e-14
PRK07042	464	PRK07042, PRK07042, amidase; Provisional	1e-13
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-12
PRK07869	468	PRK07869, PRK07869, amidase; Provisional	1e-12
PRK06529	482	PRK06529, PRK06529, amidase; Provisional	4e-10
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-10
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-09
PRK06565	566	PRK06565, PRK06565, amidase; Validated	8e-09
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-08
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-07
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	8e-05
PRK05962	424	PRK05962, PRK05962, amidase; Validated	2e-04
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	6e-04
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.001
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.001
COG2956	389	COG2956, COG2956, Predicted N-acetylglucosaminyl t	0.001
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.001
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.002
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.003
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	0.004

>gnl|CDD|166363 PLN02722, PLN02722, indole-3-acetamide amidohydrolase

 Score =  537 bits (1386), Expect = 0.0
 Identities = 239/421 (56%), Positives = 303/421 (71%), Gaps = 16/421 (3%)

Query: 33  DFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR 92
           D+GAF+EK  L     P       PL GL+FAV D+FD+EGYVTGFG+P+WARTHSAA+ 
Sbjct: 6   DYGAFMEKFVL----SPTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATS 61

Query: 93  TSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVA 152
           T+  V  ++ GGATC+GKT++DE AYSING N HY TPTNP AP ++PGGSSSG+AVAV 
Sbjct: 62  TAPAVLAVLRGGATCVGKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVG 121

Query: 153 ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKIL 212
           A LVDFSLG DT G VRVP+++CGI GFRPS+GAVS +G+IP++ S DTVGWFARDP IL
Sbjct: 122 AKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDPVIL 181

Query: 213 RHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGR-QVLKHEN 271
           + VGHVLLQ P      P QIIIA+DCF+L  IP DR+VQV++KS EKLFG   ++KH N
Sbjct: 182 KRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIVKHVN 241

Query: 272 LGEYFDSKVPSLKGF-HKTNGE----------LKNVMRLIQRYEFKNNHNEWIESVKPAL 320
           LG+Y + KVPSLK F  K   E          L + MRL+QRYEFK NH EWI +VKP  
Sbjct: 242 LGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEF 301

Query: 321 DPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM 380
            P IS  I E +  +E  I+ C+S++ E+R+A+++LL + G+LV PT   PPPKL     
Sbjct: 302 GPGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPT 361

Query: 381 LSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440
             E ++ RAFSLLSIA VSG CQV++PLG +D  P SVS +A+HG D FLL+ V+++Y +
Sbjct: 362 TLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLPVSVSLLAKHGSDGFLLNLVESLYGT 421

Query: 441 L 441
           +
Sbjct: 422 I 422

Length = 422

>gnl|CDD|181375 PRK08310, PRK08310, amidase; Provisional

 Score =  362 bits (932), Expect = e-121
 Identities = 153/412 (37%), Positives = 208/412 (50%), Gaps = 26/412 (6%)

Query: 34  FGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT 93
           F AFI K        PLP  A  PL GL FAV D+FD+ GYVTG G+P+W      A+RT
Sbjct: 7   FNAFIAKPDK-----PLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRT 61

Query: 94  STVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA 153
           +  V  L+  GA  +GKT  DE A+S+NG N HY TP NPAAP ++PGGSSSG+A AVA 
Sbjct: 62  APAVEKLLAAGARFVGKTQTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAG 121

Query: 154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILR 213
            L DF+LG DT G VR P++FCG+ G RP++G +S  G++P++ S DTVGWFARD  +L 
Sbjct: 122 GLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEGVMPLAPSFDTVGWFARDIALLE 181

Query: 214 HVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG 273
            VG VLL          ++++I  D F LL       ++  +       G          
Sbjct: 182 RVGEVLLGDDAQEFPLTQRLLIPVDLFALLDPAVRAALEAALARLRPHLG---------- 231

Query: 274 EYFDSKVPSLKGFHKTNGELK---NVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGE 330
                     K        L       R++Q  E    H  WI S  P L P ++     
Sbjct: 232 --------PAKPASVPPLSLDEWYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAA 283

Query: 331 MLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAF 390
             E++   +E  ++ R      +++LL  D +L+ PT     P  G      E Y+ RA 
Sbjct: 284 GAEVTADQVEAARARRAAFARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERAL 343

Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ 442
            LL IA ++G  Q+++PL   D  P  +S I   G DR LL   Q + A+  
Sbjct: 344 RLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDRSLLALAQTIAAARS 395

Length = 395

>gnl|CDD|223232 COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

 Score =  215 bits (549), Expect = 3e-63
 Identities = 112/392 (28%), Positives = 168/392 (42%), Gaps = 24/392 (6%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+  AV D  D  G  T  G    A         +TVV  L   GA  +GKT +DEF
Sbjct: 73  PLAGVPIAVKDNIDTAGLPTTAGSK--ALEDYVPPYDATVVERLRAAGAVILGKTNMDEF 130

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +  N  +    NP    ++PGGSS G+A AVAA LV  +LG DT G +R+P+AFCG
Sbjct: 131 AMGSSTENSAFGPTRNPWNLERVPGGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCG 190

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---DPKILRHV--GHVLLQLPFAAQRSPR 231
           ++G +P+YG VS  G++P+++SLD +G  AR   D  +L  V  G      P        
Sbjct: 191 LVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSPLPPPPPVP 250

Query: 232 QIIIADDCFELLKI--PADRVVQVVI-KSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHK 288
             +   D  + L+I  P +      +       F   V   E  G         L     
Sbjct: 251 PALAGKD-LKGLRIGVPKELGGGGPLDPDVRAAFEAAVKALEAAGAEVVEVSLPLLSDDY 309

Query: 289 TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEI--GEMLEISETVIE--NCKS 344
                       +RY  +   + + ++      P++   I  G  L +S    +    ++
Sbjct: 310 ALAAYYLARFDGERYGLRAA-DLYGKTRAEGFGPEVKRRIMLGTYL-LSAGYYDAYYRRA 367

Query: 345 IRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSED----YQNRAFSLLSIASVSG 400
            +  +R A   L ++  +L+TPTT  P PK+G  E   +D    Y    F     A+++G
Sbjct: 368 QKTLIRRAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVF--TVPANLAG 425

Query: 401 CCQVTVPLGYYDKC-PTSVSFIARHGGDRFLL 431
              ++VP G+     P  +  I     D  LL
Sbjct: 426 LPAISVPAGFTADGLPVGLQLIGPAFDDATLL 457

Length = 475

>gnl|CDD|216494 pfam01425, Amidase, Amidase

 Score =  189 bits (482), Expect = 3e-54
 Identities = 108/404 (26%), Positives = 167/404 (41%), Gaps = 47/404 (11%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+  ++ D  D++G  T  G    A         +TVV  L   GA  +GKT +DEF
Sbjct: 46  PLHGVPISLKDNIDVKGVPTTAGSK--ALEGYPPPYDATVVERLRAAGAVILGKTNMDEF 103

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A      N  +    NP   S+ PGGSS G+A AVAA LV  ++G DT G +R+P+AFCG
Sbjct: 104 AMGSTTENSAFGPTRNPWDLSRTPGGSSGGSAAAVAAGLVPLAIGTDTGGSIRIPAAFCG 163

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---------------DPKILRHVGHVLLQ 221
           ++G +P+YG VS  G++P S+SLD VG  AR               DP         +  
Sbjct: 164 LVGLKPTYGRVSRYGVVPYSSSLDHVGPLARTVEDAALLLDVIAGYDPADPTSAPSPVPD 223

Query: 222 LPFAAQRSPRQIIIA---DDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDS 278
                ++S + + I    +D +  L     R V+    + E L G +V   E        
Sbjct: 224 FAEPLKKSLKGLRIGVPREDFYFSLDPEVQRAVRKAAAALEAL-GHEV--VEVEPPSLKH 280

Query: 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISA--EIGEMLEISE 336
            +P             N+  L + Y                L  ++    E+G     + 
Sbjct: 281 ALPLYYIIAPAEA-SSNLSDLDELYP---------RIRDELLGDEVKRRIELGAYALSAG 330

Query: 337 TVIENCKS---IRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLL 393
                      +R  +R   + L ++  +L++PTT  P P+LG     ++        L 
Sbjct: 331 YSGAYYLKAQKVRRLLRREFAGLFEELDVLLSPTTPTPAPRLG---EAADSPTVLYNLLD 387

Query: 394 SI-----ASVSGCCQVTVPLGY-YDKCPTSVSFIARHGGDRFLL 431
                  A+++G   +++P G+  D  P  +  I   G D  LL
Sbjct: 388 FTANTVPANLAGLPAISLPAGFSEDGLPVGLQIIGPPGDDETLL 431

Length = 431

>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional

 Score =  158 bits (403), Expect = 1e-42
 Identities = 77/184 (41%), Positives = 99/184 (53%), Gaps = 5/184 (2%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +   PL G+ FAV +LFD+ G  T  G  +  R    A+R +T V  L   GA  +G   
Sbjct: 67  EPLGPLAGVPFAVKNLFDVAGLTTLAG-SKINRDRPPATRDATAVRRLEAAGAVLVGALN 125

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
           +DE+AY     N HY    NP   +++ GGSS G+A AVAA LV F+LG DT G +RVP+
Sbjct: 126 MDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAAAVAAGLVPFTLGSDTNGSIRVPA 185

Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL----LQLPFAAQR 228
           + CGI G +P+YG +S  G  P   SLD +G FAR    L  V  VL     Q PF A R
Sbjct: 186 SLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQADR 245

Query: 229 SPRQ 232
               
Sbjct: 246 PAEP 249

Length = 465

>gnl|CDD|232842 TIGR00132, gatA, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit

 Score =  157 bits (400), Expect = 3e-42
 Identities = 108/419 (25%), Positives = 178/419 (42%), Gaps = 64/419 (15%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT---------STVVSTLVEGGATC 107
           PL G+  AV D    +G VT           + AS+          +TV+  L + GA  
Sbjct: 55  PLAGIPIAVKDNISTKGIVT-----------TCASKILENYIPPYDATVIERLKQAGALI 103

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           IGKT +DEFA   +     +    NP    ++PGGSS G+A AVAADL  FSLG DT G 
Sbjct: 104 IGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGS 163

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL----LQLP 223
           +R P++FCG++GF+P+YG VS  G++  ++SLD +G FAR  + +  +  V+     +  
Sbjct: 164 IRQPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDS 223

Query: 224 FAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLK-HENLGEYFDSKVPS 282
            +A+    +       FE LK     +   V+K   +   ++V +  EN  E  +     
Sbjct: 224 TSAKVPDPEF------FEELKKDLKGLKVGVVKEFSEEMDKEVQEKFENALEVLEELGAE 277

Query: 283 LKGFHKTNGELKNVM---RLIQRYEFKNNH---------------NEWIESVKPALDPDI 324
           +         +K  +    +I   E  +N                N   E          
Sbjct: 278 IVEVSF--PHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKTRAEGF 335

Query: 325 SAE------IGEML---EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKL 375
             E      +G         +      + +R  +      L ++  ++V+PT    P K+
Sbjct: 336 GEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKI 395

Query: 376 GGKEMLSEDYQNRAFSLLSI-ASVSGCCQVTVPLGYYDK-CPTSVSFIARHGGDRFLLD 432
           G  E L +  +     +L++ A+++G   ++VP G  +K  P  +  I +   D+ LL 
Sbjct: 396 G--EKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQ 452

In many species, Gln--tRNA ligase is missing. tRNA(Gln) is misacylated with Glu after which a heterotrimeric amidotransferase converts Glu to Gln. This model represents the amidase chain of that heterotrimer, encoded by the gatA gene. In the Archaea, Asn--tRNA ligase is also missing. This amidase subunit may also function in the conversion of Asp-tRNA(Asn) to Asn-tRNA(Asn), presumably with a different recognition unit to replace gatB. Both Methanococcus jannaschii and Methanobacterium thermoautotrophicum have both authentic gatB and a gatB-related gene, but only one gene like gatA. It has been shown that gatA can be expressed only when gatC is also expressed. In most species expressing the amidotransferase, the gatC ortholog is about 90 residues in length, but in Mycoplasma genitalium and Mycoplasma pneumoniae the gatC equivalent is as the C-terminal domain of a much longer protein. Not surprisingly, the Mycoplasmas also represent the most atypical lineage of gatA orthology. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species [Protein synthesis, tRNA aminoacylation]. Length = 460

>gnl|CDD|235921 PRK07056, PRK07056, amidase; Provisional

 Score =  154 bits (391), Expect = 4e-41
 Identities = 69/160 (43%), Positives = 95/160 (59%), Gaps = 7/160 (4%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSA-ASRTSTVVSTLVEGGATCIGKT 111
            AP PL G+  +V DLFD+ G VT  G        +  A+  +  V+ L   GA  IG+T
Sbjct: 67  AAPSPLAGIPVSVKDLFDVAGQVTRAGSR--VLADAPPAAADAPAVARLRRAGAVLIGRT 124

Query: 112 VVDEFAYSINGTNKHYDTPTNPAA----PSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
            + EFA+S  G N HY TP NP        ++PGGSSSGAAV+VA  +   +LG DT G 
Sbjct: 125 NMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGAAVSVADGMAAAALGTDTGGS 184

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           +R+P+A CG+ GF+P+   V   G +P+ST+LD++G  AR
Sbjct: 185 IRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLAR 224

Length = 454

>gnl|CDD|235698 PRK06102, PRK06102, hypothetical protein; Provisional

 Score =  152 bits (387), Expect = 1e-40
 Identities = 114/404 (28%), Positives = 171/404 (42%), Gaps = 60/404 (14%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
            L G+  A  DLFD+ G VT  G    A   + ASR + VV+ L   G   IG+T + EF
Sbjct: 69  LLDGIPIAWKDLFDVAGSVTTAGSVVLANA-APASRDAAVVALLARAGMVSIGRTNMSEF 127

Query: 117 AYSINGTNKHYDTPTNPAAPSQ--MPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAF 174
           A+S  G N HY TP NP +     +PGGSSSG+AVAVAA LV  ++G DT G VR+P+AF
Sbjct: 128 AFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAF 187

Query: 175 CGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR--------DPKILRHVGHVLLQLPFAA 226
            G++G++ + G  S  G+ P++ SLD++G   R        D  +       +++ P A 
Sbjct: 188 NGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVRRPLAG 247

Query: 227 QR--SPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLK 284
            R   P  ++   D  E    P   V      + E+L     L             P+ +
Sbjct: 248 LRLVVPETVV--FDDAE----PG--VRAAFEAAVERLQAAGALVER-------QAFPAFQ 292

Query: 285 GFHKTNGELKNVMRLIQRY------EFKNNHNEWIESVKPA-LDPDISA--EIGEMLEIS 335
                      ++ LI R+      E    H E ++    A +DP +     +G  +  S
Sbjct: 293 E----------ILDLIARHGWLVTAEAFALHQERLDGPDAARMDPRVVKRTRLGRKITAS 342

Query: 336 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQ------NRA 389
           + +       R  + + ++  L    +L TPT A+  P L     L  D         + 
Sbjct: 343 DYI--ALLEARERLIAQVTREL-GGALLATPTVAHVAPPLAP---LEADDDLFFATNLKT 396

Query: 390 FSLLSIASVSGCCQVTVPLGYYDK-CPTSVSFIARHGGDRFLLD 432
                  +    C V++P G      P  +   A  G D  LL 
Sbjct: 397 LRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLR 440

Length = 452

>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family

 Score =  150 bits (381), Expect = 9e-40
 Identities = 70/155 (45%), Positives = 91/155 (58%), Gaps = 1/155 (0%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
               PL G+ FAV +LFD+ G  T  G  +  R  + A R +T+V  L   GA  +G   
Sbjct: 60  SPLGPLAGVPFAVKNLFDVAGLTTLAG-AKINRDLAPAKRDATLVQRLSAAGAVLVGALN 118

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
           +DEFAY     N HY    NP   +++ GGSS G+A AVAA LV FSLG DT G +RVP+
Sbjct: 119 MDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAAGLVPFSLGSDTNGSIRVPA 178

Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           + CG+ G +P+YG +S  G+ P   SLD VG FAR
Sbjct: 179 SLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFAR 213

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease [Unknown function, Enzymes of unknown specificity]. Length = 452

>gnl|CDD|234572 PRK00012, gatA, aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

 Score =  146 bits (370), Expect = 3e-38
 Identities = 63/161 (39%), Positives = 87/161 (54%), Gaps = 20/161 (12%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT---------STVVSTLVEGGATC 107
           PL G+  A+ D    +G  T           + AS+          +TVV  L   GA  
Sbjct: 55  PLAGIPIAIKDNICTKGIRT-----------TCASKILENYVPPYDATVVEKLKAAGAVI 103

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           +GKT +DEFA   +  N  +    NP    ++PGGSS G+A AVAA L   +LG DT G 
Sbjct: 104 LGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGS 163

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           +R P+AFCG++G +P+YG VS  G+I  ++SLD +G FAR 
Sbjct: 164 IRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFART 204

Length = 459

>gnl|CDD|236177 PRK08186, PRK08186, allophanate hydrolase; Provisional

 Score =  146 bits (371), Expect = 2e-37
 Identities = 74/181 (40%), Positives = 95/181 (52%), Gaps = 8/181 (4%)

Query: 33  DFGAFIEKL---QLLPPPQPLPPKAPH--PLTGLSFAVSDLFDIEGYVTGFGHPEWARTH 87
           D   +I       LL     L  + P   PL G+ FAV D  D+ G  T    P +A T 
Sbjct: 39  DPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPTTAACPAFAYT- 97

Query: 88  SAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA 147
               R +TVV+ L   GA  IGKT +D+FA  + GT   Y    N   P  + GGSSSG+
Sbjct: 98  --PERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGS 155

Query: 148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           AVAVA  LV F+LG DT G  RVP+AF  I+G +P+ G +S  G++P   +LD V  FA 
Sbjct: 156 AVAVALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFAL 215

Query: 208 D 208
            
Sbjct: 216 T 216

Length = 600

>gnl|CDD|233981 TIGR02713, allophanate_hyd, allophanate hydrolase

 Score =  144 bits (364), Expect = 7e-37
 Identities = 76/211 (36%), Positives = 103/211 (48%), Gaps = 16/211 (7%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+ FAV D  D+ G  T    P +A T       +TVV+ L   GA  +GKT +D+F
Sbjct: 31  PLYGVPFAVKDNIDVAGLPTTAACPAFAYT---PEEDATVVALLRAAGAIVVGKTNLDQF 87

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A  + GT   Y    N   P+ + GGSSSG+AVAVA  LV F+LG DT G  RVP+A   
Sbjct: 88  ATGLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNN 147

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARD----PKILRHVGHVLLQLPFAAQRSPRQ 232
           I+G +P+ G VS  G++P   SLD V  FA       ++LR       + P++       
Sbjct: 148 IVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQVLRIAAAPDARDPYSRPLPAAA 207

Query: 233 IIIADDCFELLKIPADRVVQVVIKSTEKLFG 263
                    L + P    V V   +  + FG
Sbjct: 208 ---------LRRFPPPPRVGVPRAAQLEFFG 229

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase [Central intermediary metabolism, Nitrogen metabolism]. Length = 561

>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated

 Score =  129 bits (327), Expect = 1e-32
 Identities = 63/151 (41%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G   ++ DLFD+ G  T  G     R    A   + +V  L   GA  IGKT + EF
Sbjct: 45  PLDGRIVSIKDLFDVAGEPTLAGSV-IRRDAPPAGADALIVQRLRNAGAVIIGKTHMTEF 103

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A++  G N HY  P N   P+++PGGSSSGAAV+VA    + ++G DT G VR+P+A  G
Sbjct: 104 AFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNG 163

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           ++GF+P+   +   G  P+S SLD++G  AR
Sbjct: 164 LVGFKPTARRIPLEGAFPLSPSLDSIGPLAR 194

Length = 424

>gnl|CDD|236030 PRK07488, PRK07488, indole acetimide hydrolase; Validated

 Score =  128 bits (324), Expect = 7e-32
 Identities = 60/154 (38%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 54  APHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVV 113
           A   L G+   + D  +  G  T  G P        A   + VV  L++ GA  +GK  +
Sbjct: 70  AALLLAGVPIVIKDNINTAGMPTTAGTPALLG-FVPA-TDAPVVQRLLDAGAVPLGKANM 127

Query: 114 DEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSA 173
            E A+ I   N  +    NP  P+++ GGSS G A AVAA L    LG DT G VR+P+A
Sbjct: 128 HELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTAAAVAARLAPAGLGTDTGGSVRIPAA 187

Query: 174 FCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
            CG++G RP+ G  S  G++PIS + DTVG  AR
Sbjct: 188 LCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIAR 221

Length = 472

>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional

 Score =  113 bits (286), Expect = 3e-27
 Identities = 50/128 (39%), Positives = 70/128 (54%), Gaps = 4/128 (3%)

Query: 91  SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVA 150
           S  +TVV  L+  GA  + K   DE      G    +    NP   S++ GGSSSG+A A
Sbjct: 68  SYNATVVQKLINAGAKPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSA-A 126

Query: 151 VAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR--- 207
                + F++G DT   VR+P++F G +GF+PSYGA+S  G+   ++SLDTV +F     
Sbjct: 127 TFNKNISFAIGSDTGDSVRLPASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNVN 186

Query: 208 DPKILRHV 215
           D  IL  V
Sbjct: 187 DAIILSKV 194

Length = 439

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 96.3 bits (240), Expect = 5e-24
 Identities = 40/100 (40%), Positives = 57/100 (57%)

Query: 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524
           E     GN  YK   + +A+ +Y +A++L+ +NA  Y N AAAY + G + +A  D  KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 525 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564
           + LD  N KAY   G A   LG Y+EA+E +  AL L+P 
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|235979 PRK07235, PRK07235, amidase; Provisional

 Score =  105 bits (263), Expect = 6e-24
 Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 2/118 (1%)

Query: 91  SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPT-NPAAPSQMPGGSSSGAAV 149
           S  +TVV+ L++ GAT +GK   ++  +S  G++     P  NP  P    GGSSSG+A 
Sbjct: 119 SFDATVVTRLLDAGATIVGKATCEDLCFS-GGSHTSDPGPVHNPRDPGYSAGGSSSGSAA 177

Query: 150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
            VAA  VD ++G D  G +R+PSA+CGI G +P++G V + G  PI  ++D +G    
Sbjct: 178 LVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTA 235

Length = 502

>gnl|CDD|171524 PRK12470, PRK12470, amidase; Provisional

 Score =  101 bits (253), Expect = 6e-23
 Identities = 105/414 (25%), Positives = 161/414 (38%), Gaps = 60/414 (14%)

Query: 55  PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVD 114
             PL G+  A+ D  D+ G VT +G    A    AA+  + VV  L   GA  IGKT V 
Sbjct: 70  RLPLLGVPIAIKDDVDVAGEVTTYGS---AGHGPAATSDAEVVRRLRAAGAVIIGKTNVP 126

Query: 115 EFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAF 174
           E        +  +    NP  P++ PGGSS G+A AVAA L   +LG D  G +R+PS +
Sbjct: 127 ELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSAAAVAAGLAPVALGSDGGGSIRIPSTW 186

Query: 175 CGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR---DPKILRHVGHVL--LQLPF--AAQ 227
           CG+ G +P    +S          L   G  AR   D  +L      +   +  F  AA 
Sbjct: 187 CGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGEFVAAAA 246

Query: 228 RSPRQIIIADDCFELLKIPADRVVQV------VIKSTEKL---FGRQVLKHENLGEYFDS 278
           R P ++ IA       ++P    V+        +     L    G  V+  +   +Y   
Sbjct: 247 REPGRLRIALS----TRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVVVRDP--DYPA- 299

Query: 279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETV 338
              +   +      L    R I        H + +E+   A+     A +G     S+  
Sbjct: 300 --ATYANY------LPRFFRGISDDADAQAHPDRLEARTRAI-----ARLGSF--FSDRR 344

Query: 339 IENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAF--SLLSIA 396
           +   ++    + + I S+  D  ++VTP TA  P ++G        YQ R    +LL + 
Sbjct: 345 MAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIGA-------YQRRGAVSTLLLVV 397

Query: 397 SVSGCCQV---------TVPLGY-YDKCPTSVSFIARHGGDRFLLDTVQNMYAS 440
                 QV          VP  +  D  P SV  + R   +  LL     + ++
Sbjct: 398 QRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA 451

Length = 462

>gnl|CDD|235723 PRK06170, PRK06170, amidase; Provisional

 Score = 98.6 bits (246), Expect = 8e-22
 Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 2/138 (1%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+   V + F++ G  T +G P+  R +  A   +  V+ L   GA  +GKT V   
Sbjct: 75  PLLGIPVTVKESFNVAGLPTTWGFPDL-RDYVPA-EDAVAVARLKAAGAVILGKTNVPLG 132

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
                  N+ Y T  NP   ++ PGGSS G+A A+AA     S+G D  G +RVP+ +CG
Sbjct: 133 LQDWQSYNEIYGTTNNPWDLARTPGGSSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCG 192

Query: 177 ILGFRPSYGAVSHMGIIP 194
           +   +P+ G V   G IP
Sbjct: 193 VYAHKPTLGLVPLRGHIP 210

Length = 490

>gnl|CDD|236028 PRK07486, PRK07486, amidase; Provisional

 Score = 95.9 bits (239), Expect = 5e-21
 Identities = 62/194 (31%), Positives = 81/194 (41%), Gaps = 21/194 (10%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
            L G+  A  DL   +G  T  G P +A         + VV  +   GA  IGKT   EF
Sbjct: 77  WLHGMPQAPKDLAPTKGIRTTLGSPIFA--DQVPQEDAIVVERMRAAGAIFIGKTNTPEF 134

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
               +  N  Y    NP  PS+  GGSS GAA A+A  ++  + G D +G +R P+AF  
Sbjct: 135 GLGSHTYNPVYGATRNPYDPSRSAGGSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNN 194

Query: 177 ILGFRPSYGAVSH----------------MG--IIPISTSLDT-VGWFARDPKILRHVGH 217
           + GFRPS G V H                MG  +  ++  L    G+  RDP  L     
Sbjct: 195 VYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYDPRDPLSLAEDPA 254

Query: 218 VLLQLPFAAQRSPR 231
              Q   A  R  R
Sbjct: 255 RFAQPLEADLRGKR 268

Length = 484

>gnl|CDD|180437 PRK06169, PRK06169, putative amidase; Provisional

 Score = 95.9 bits (239), Expect = 6e-21
 Identities = 56/176 (31%), Positives = 80/176 (45%), Gaps = 24/176 (13%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA---SRTSTVVSTLVEGGATCIGKTVV 113
            L G+  ++ D+F   G+ T  G    +R   A       +  V+ L E GA  +GKT  
Sbjct: 71  LLDGVPVSIKDIFLTRGWPTLRG----SRAIDADGPWDVDAPAVARLREAGAVLLGKTTT 126

Query: 114 DEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSA 173
            EF +     +  Y    NP       GGSS GAA AVA  +   S+G D  G VR+P++
Sbjct: 127 PEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGAAAAVALGMGPLSVGTDGGGSVRIPAS 186

Query: 174 FCGILGFRPSYGAV-----SHMGII----PISTS-------LDTVGWF-ARDPKIL 212
           FCG  GF+P++G V     S  G +    P++ +       LD +    ARD   L
Sbjct: 187 FCGTFGFKPTFGRVPLYPASPFGTLAHVGPMTRTVADAALLLDVIARPDARDWSAL 242

Length = 466

>gnl|CDD|236161 PRK08137, PRK08137, amidase; Provisional

 Score = 90.6 bits (225), Expect = 3e-19
 Identities = 54/157 (34%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 57  PLTGLSFAVSDLFD-IEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDE 115
           PL G+   + D  D  +   T  G    A   +  +R + +V+ L + GA  +GK  + E
Sbjct: 72  PLHGIPVLLKDNIDAADPMPTTAG--SLALAGNRPTRDAFLVARLRDAGAVILGKANLSE 129

Query: 116 FA-----YSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRV 170
           +A      S +G +       NP A  + P GSSSG+  AVAA L   ++G +T G +  
Sbjct: 130 WANFRSTRSSSGWSARGGLTRNPYALDRSPCGSSSGSGAAVAAGLAAVAIGTETDGSITC 189

Query: 171 PSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           P+A  G++G +P+ G VS  GI+PIS S DT G   R
Sbjct: 190 PAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTR 226

Length = 497

>gnl|CDD|235855 PRK06707, PRK06707, amidase; Provisional

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 49/128 (38%), Positives = 69/128 (53%), Gaps = 8/128 (6%)

Query: 90  ASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGT------NKHYDTPTNPAAPSQM-PGG 142
           A + +T+V  L E GA  +GK  + E+A  ++ T       K      NP  P +    G
Sbjct: 168 ADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQN-LNPYGPIKFDTSG 226

Query: 143 SSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV 202
           SSSG+A  VAAD    ++G +T G +  P+A   ++G RPS G VS  GIIP++ +LDT 
Sbjct: 227 SSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTA 286

Query: 203 GWFARDPK 210
           G  AR  K
Sbjct: 287 GPMARTVK 294

Length = 536

>gnl|CDD|180715 PRK06828, PRK06828, amidase; Provisional

 Score = 85.6 bits (212), Expect = 1e-17
 Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 15/142 (10%)

Query: 84  ARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFA----------YSINGTNKHYDTPTNP 133
           A     +S  + +V+ L E GA  +GK  + E A          YS  G       P   
Sbjct: 105 ALEQHISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTI--NPYGT 162

Query: 134 AAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGII 193
                  GGSS+G+A+AVAA+    S+G +T G +  P+    ++G +P+ G +S  GII
Sbjct: 163 GEDDMFVGGSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGII 222

Query: 194 PISTSLDTVGWFAR---DPKIL 212
           P + S DT G FAR   D  IL
Sbjct: 223 PFTYSQDTAGPFARTVTDAAIL 244

Length = 491

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEAD 520
            +AE  K  GN  +K   + +AI  Y +A++L+ +NA  Y N A AYL+ G  + +A  D
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 521 CTKAINLDK 529
             KA+ LD 
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|235686 PRK06061, PRK06061, amidase; Provisional

 Score = 83.2 bits (206), Expect = 8e-17
 Identities = 48/132 (36%), Positives = 65/132 (49%), Gaps = 3/132 (2%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+  AV D  D+ G  T FG          A+  S VV  L   GA  +GKT   E 
Sbjct: 81  PLLGVPIAVKDDVDVAGVPTAFGTAG---EVPPATADSEVVRRLRAAGAVIVGKTNTCEL 137

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
                 +   +    NP +    PGGSS G+A AVAA LV  ++G D  G VR+P+A+  
Sbjct: 138 GQWPFTSGPAFGHTRNPWSRDHTPGGSSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTH 197

Query: 177 ILGFRPSYGAVS 188
           ++G +P  G +S
Sbjct: 198 LVGIKPQRGRIS 209

Length = 483

>gnl|CDD|236029 PRK07487, PRK07487, amidase; Provisional

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 60/184 (32%), Positives = 75/184 (40%), Gaps = 17/184 (9%)

Query: 55  PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVD 114
           P PL G+   V    D  G+ T  G          A   S VV  L + GA  IG+T   
Sbjct: 70  PGPLAGVPVTVKVNVDQAGFATTNGVRLQK--DLIAPADSPVVDNLRKAGAVIIGRTNTP 127

Query: 115 EFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAF 174
            F+Y     N  +    NP  PS  PGGSS GAA AVAA +   + G D  G +R P+  
Sbjct: 128 AFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAAAAVAAGIGAIAHGTDIGGSIRYPAYA 187

Query: 175 CGILGFRPSYGAV-------SHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ 227
           CG+ G RP+ G V           I     S        + P + R V  + L L   A 
Sbjct: 188 CGVHGLRPTLGRVPAYNASSPERPIGAQLMS-------VQGP-LARTVADLRLALAAMAA 239

Query: 228 RSPR 231
             PR
Sbjct: 240 PDPR 243

Length = 469

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 79.3 bits (195), Expect = 2e-15
 Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 2/141 (1%)

Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499
              E  +I   S  + +   +K+ A   KEKGN+AY++K + KAI  Y++AI+    +  
Sbjct: 103 PADELPEIDESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK-PDPV 161

Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 559
           YYSNRAA +   G + +   D T A+ LD    KA  RR  A + LG Y +A+ D + + 
Sbjct: 162 YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASC 221

Query: 560 VLEPTNKRASLSA-DRLRKVF 579
           +++      S  A +RL K F
Sbjct: 222 IIDGFRNEQSAQAVERLLKKF 242

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 73.7 bits (181), Expect = 4e-14
 Identities = 41/104 (39%), Positives = 59/104 (56%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A+  ++K  +A+ D  +  A+  YT+AI L+ NNA  Y++RA A ++ G+F +A AD  K
Sbjct: 2   AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANK 61

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 567
           AI LD    KAYLR+GTA   L  Y+ A         L P + R
Sbjct: 62  AIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR 105

Length = 356

>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional

 Score = 74.3 bits (182), Expect = 6e-14
 Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 5/119 (4%)

Query: 94  STVVSTLVEGGATCIGKTVVDEFAYSI-----NGTNKHYDTPTNPAAPSQMPGGSSSGAA 148
           +T+V  L   GA  +GKT + E+A  +     NG +       NP + +  P GSSSG+A
Sbjct: 264 ATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDPSGSSSGSA 323

Query: 149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
            A  +D    ++G +T G +  P++    +G++PS G V++ GIIP+S+  DT G   R
Sbjct: 324 TAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTR 382

Length = 615

>gnl|CDD|235915 PRK07042, PRK07042, amidase; Provisional

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 34/88 (38%), Positives = 48/88 (54%)

Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFS 159
           L E GA  + KT + ++    +G +  +    NP    Q PGGSS+GA  A AA      
Sbjct: 112 LREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAGAAAAAGYGPLH 171

Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAV 187
           LG D  G VR+P+ +CGI+G +PS G +
Sbjct: 172 LGTDIGGSVRLPAGWCGIVGLKPSLGRI 199

Length = 464

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 62.7 bits (153), Expect = 1e-12
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY-YKEAIED 554
           +NA    N   A  + G + +A     KA+ LD  N +AY     A   LG  Y+EA+ED
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 555 FSYALVLEP 563
              AL L+P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|181154 PRK07869, PRK07869, amidase; Provisional

 Score = 69.6 bits (171), Expect = 1e-12
 Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 27/193 (13%)

Query: 46  PPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGA 105
             +P         +G+   + D  D+ G  T  G   W      A   S      +  G 
Sbjct: 64  AARPGSQGGF--FSGVPTFIKDNVDVAGLPTMHGSDAWTPR--PAKADSDFARQFLATGL 119

Query: 106 TCIGKTVVDEFAYSINGTNKHYD-TPT-NPAAPSQMPGGSSSGAAVAVAADLVDFSLGID 163
             +GKT + EF +S   + +H    P  NP       G SS G+A  VAA +V  +   D
Sbjct: 120 ISLGKTQLPEFGFS--ASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAAGVVPIAHAND 177

Query: 164 TVGGVRVPSAFCGILGFRPSYG------AVSHMGIIPIS------TSLDTVGWFA----- 206
             G +R+P+A CG++G +PS G       +  + +  ++      T  DT  ++      
Sbjct: 178 GGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERY 237

Query: 207 -RDPKILRHVGHV 218
            R+PK L  +G V
Sbjct: 238 YRNPK-LPPIGDV 249

Length = 468

>gnl|CDD|180608 PRK06529, PRK06529, amidase; Provisional

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 2/102 (1%)

Query: 87  HSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTN-PAAPSQMPGGSSS 145
           +  A++T   V  L + G   +G++   EF +  N ++     P N P   S+  GGSS 
Sbjct: 91  NYQATKTDLYVKRLEDLGFIILGRSNTPEFGFK-NISDSSLHGPVNLPFDNSRNAGGSSG 149

Query: 146 GAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAV 187
           GAA  V++ +V  +   D  G +R+P++F G++G +PS G +
Sbjct: 150 GAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRI 191

Length = 482

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 25/68 (36%), Positives = 34/68 (50%)

Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 560
             N    Y + G + +A     KA+ LD  N  AY     A   LG Y+EA+ED+  AL 
Sbjct: 3   LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62

Query: 561 LEPTNKRA 568
           L+P N +A
Sbjct: 63  LDPDNAKA 70

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 59.1 bits (141), Expect = 1e-09
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 1/104 (0%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEA 519
            + AE     G       ++ +A+    +A+KLN ++ A    N    YL+ G + +A  
Sbjct: 164 NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
              KA+ LD  N +A          LG Y+EA+E    AL L+P
Sbjct: 224 YYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267

Length = 291

>gnl|CDD|180626 PRK06565, PRK06565, amidase; Validated

 Score = 57.9 bits (140), Expect = 8e-09
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 15/159 (9%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
           PL G+ +   D + ++G     G P +      A R +  +  L   GA C+GKT +   
Sbjct: 75  PLDGIPYTAKDSYLVKGLTAASGSPAFK--DLVAQRDAFTIERLRAAGAICLGKTNMPPM 132

Query: 117 AYSINGTNK--HY---DTPTNPA---APSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGV 168
           A   NG  +   Y   ++P N A   AP     GSS+GA  A AA    F L  +T    
Sbjct: 133 A---NGGMQRGVYGRAESPYNAAYLTAP--FASGSSNGAGTATAASFSAFGLAEETWSSG 187

Query: 169 RVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           R P++  G+  + PS G +S  G  P++ ++D V  +AR
Sbjct: 188 RGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYAR 226

Length = 566

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 55.6 bits (132), Expect = 2e-08
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 5/115 (4%)

Query: 459 NQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSF 514
                          A  +   + +A+  Y +A++L+      A       A     G +
Sbjct: 124 LDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRY 183

Query: 515 LQAEADCTKAINLDKKN-VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A     KA+ L+  +  +A L  G     LG Y+EA+E +  AL L+P N  A
Sbjct: 184 EEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEA 238

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 51.8 bits (122), Expect = 4e-07
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 4/154 (2%)

Query: 421 IARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQW 480
           +  +     LL  +      L    +     + +         AE     G       ++
Sbjct: 52  LLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111

Query: 481 LKAISFYTEAIKLNGNNATYYSNRA-AAYLESGSFLQAEADCTKAINLDKKN---VKAYL 536
            +A+    +A+ L+ +     +  A  A  E G + +A     KA+ LD +     +A L
Sbjct: 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALL 171

Query: 537 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 570
             G   E LG Y+EA+E    AL L P +   +L
Sbjct: 172 ALGALLEALGRYEEALELLEKALKLNPDDDAEAL 205

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 48.5 bits (116), Expect = 9e-06
 Identities = 29/96 (30%), Positives = 44/96 (45%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY 535
           +  +  +AI+  + A+ L+ ++    S    AYL  G F +A     KA  LD +N  A 
Sbjct: 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAAR 400

Query: 536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 571
            + G ++   G   EAI D   A  L+P   RA L 
Sbjct: 401 TQLGISKLSQGDPSEAIADLETAAQLDPELGRADLL 436

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 17/62 (27%), Positives = 24/62 (38%)

Query: 504 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
            A A L +G + +A A    A+       +A L  G A    G   EA      AL  +P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 564 TN 565
            +
Sbjct: 63  DD 64

Length = 65

>gnl|CDD|168315 PRK05962, PRK05962, amidase; Validated

 Score = 44.0 bits (104), Expect = 2e-04
 Identities = 27/139 (19%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 309 HNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT 368
           H +W+  +   +D  +   +   +++           R  +  A+   L    +   P T
Sbjct: 287 HADWLADLDANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLAGFDMFALPAT 346

Query: 369 AYPPPKLGGKEMLSEDYQNRAFSLL----SIASVSGCCQVTVPLGYYDKCPTSVSFIARH 424
               P +       E+Y +R  +LL     +A+    C +T+P+      P  +   AR+
Sbjct: 347 PIVAPTIASVSEDEEEY-DRVENLLLRNTQVANQFDLCSITLPMPGM-ALPAGLMLTARN 404

Query: 425 GGDRFLLDTVQNMYASLQE 443
           G DR LL    ++   L+ 
Sbjct: 405 GSDRRLLAAAASVEKLLEH 423

Length = 424

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 43.3 bits (100), Expect = 2e-04
 Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 5/113 (4%)

Query: 461 KQSAEIAKEKGNQAYKDKQWL-KAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQA 517
              A    E G    +    L +A+    EA++L  N + A      A A L+ G   +A
Sbjct: 19  LAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEA 78

Query: 518 EADCTKAIN--LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
                KA+   L     +A L  G   E LG Y+EA+E    AL L+P    A
Sbjct: 79  LELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA 131

Length = 291

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 15/34 (44%), Positives = 17/34 (50%)

Query: 532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
            KA    G A   LG Y EA+E +  AL L P N
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 13/120 (10%)

Query: 459 NQKQSAEIAKEKGN---QAYKDKQWLKAISFYTEAI----------KLNGNNATYYSNRA 505
             + S E+ +E GN   Q        KA   Y EA           KL    A   + R 
Sbjct: 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRG 338

Query: 506 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
                 G  L+A AD +K+I LD +  ++Y++R +    LG   +A EDF  AL L   +
Sbjct: 339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 21/78 (26%), Positives = 37/78 (47%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
           KA   + +A+KLN  +   Y +RA  +   G F QA  D  K+I+LD   + ++++ G  
Sbjct: 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442

Query: 542 REMLGYYKEAIEDFSYAL 559
           +   G    ++  F    
Sbjct: 443 QYKEGSIASSMATFRRCK 460

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 22/155 (14%)

Query: 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE 489
           LLD  ++++  L ++ + A  +         +Q   I +         ++W KAI     
Sbjct: 122 LLDRAEDIFNQLVDEGEFAEGAL--------QQLLNIYQ-------ATREWEKAIDVAER 166

Query: 490 AIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM 544
            +KL G       A +Y   A   L S    +A     KA+  DKK V+A +  G     
Sbjct: 167 LVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA 226

Query: 545 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF 579
            G Y++A+E  +   VLE   +  S   + L + +
Sbjct: 227 KGDYQKAVE--ALERVLEQNPEYLSEVLEMLYECY 259

Length = 389

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKAYLRRGTAREMLGYYKE 550
           A   +N A      G + +A     KA+ L ++         +A          LG Y E
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64

Query: 551 AIEDFSYAL 559
           A+E    AL
Sbjct: 65  ALEYLEKAL 73

Length = 78

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
            +A    G A   LG Y+EA+E +  AL L+P N
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 11/60 (18%), Positives = 19/60 (31%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                A +   + +A++    A+      A        A L  G   +A A    A+  D
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Length = 65

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNRAAAYLESGSFLQ 516
           A           +   + +A+    +A++L       +   A   +N A  YL  G + +
Sbjct: 5   AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64

Query: 517 AEADCTKAINLDKK 530
           A     KA+ L + 
Sbjct: 65  ALEYLEKALALREA 78

Length = 78

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 23/85 (27%), Positives = 45/85 (52%)

Query: 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540
           L+A++  +++I+L+      Y  RA+  LE G   +AE D  KA+ L+ ++   Y  R  
Sbjct: 348 LEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407

Query: 541 AREMLGYYKEAIEDFSYALVLEPTN 565
              + G + +A +D+  ++ L+P  
Sbjct: 408 LHFIKGEFAQAGKDYQKSIDLDPDF 432

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	580
PLN02722	422	indole-3-acetamide amidohydrolase	100.0
COG0154	475	GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A su	100.0
PRK09201	465	amidase; Provisional	100.0
TIGR02715	452	amido_AtzE amidohydrolase, AtzE family. Members of	100.0
PRK05962	424	amidase; Validated	100.0
PRK07487	469	amidase; Provisional	100.0
PRK06102	452	hypothetical protein; Provisional	100.0
PRK08310	395	amidase; Provisional	100.0
PRK06169	466	putative amidase; Provisional	100.0
PRK07056	454	amidase; Provisional	100.0
PRK07235	502	amidase; Provisional	100.0
PRK07042	464	amidase; Provisional	100.0
PRK07486	484	amidase; Provisional	100.0
PRK12470	462	amidase; Provisional	100.0
PRK06170	490	amidase; Provisional	100.0
PRK07488	472	indole acetimide hydrolase; Validated	100.0
TIGR00132	460	gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	100.0
PRK06061	483	amidase; Provisional	100.0
PRK06529	482	amidase; Provisional	100.0
PRK00012	459	gatA aspartyl/glutamyl-tRNA amidotransferase subun	100.0
PRK07869	468	amidase; Provisional	100.0
PRK08137	497	amidase; Provisional	100.0
PRK08186	600	allophanate hydrolase; Provisional	100.0
PRK07139	439	amidase; Provisional	100.0
TIGR02713	561	allophanate_hyd allophanate hydrolase. Allophanate	100.0
PRK06828	491	amidase; Provisional	100.0
PF01425	441	Amidase: Amidase; InterPro: IPR000120 Amidase sign	100.0
PRK11910	615	amidase; Provisional	100.0
PRK06707	536	amidase; Provisional	100.0
PRK06565	566	amidase; Validated	100.0
KOG1211	506	consensus Amidases [Translation, ribosomal structu	100.0
KOG1212	560	consensus Amidases [Translation, ribosomal structu	100.0
KOG0553	304	consensus TPR repeat-containing protein [General f	99.77
PRK15359	144	type III secretion system chaperone protein SscB;	99.66
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.59
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.55
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.55
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.54
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.54
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.53
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.53
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.51
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.45
PRK11189	296	lipoprotein NlpI; Provisional	99.45
KOG4234	271	consensus TPR repeat-containing protein [General f	99.43
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.4
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.35
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.34
KOG1126	638	consensus DNA-binding cell division cycle control	99.33
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.32
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.32
PRK12370	553	invasion protein regulator; Provisional	99.3
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.3
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.3
PRK12370	553	invasion protein regulator; Provisional	99.3
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.28
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.28
KOG1126	638	consensus DNA-binding cell division cycle control	99.28
PRK11189	296	lipoprotein NlpI; Provisional	99.27
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.27
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.26
PLN02789	320	farnesyltranstransferase	99.26
PRK15331	165	chaperone protein SicA; Provisional	99.23
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.23
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.22
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.21
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.21
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.2
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.2
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.2
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.2
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.19
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.19
KOG1125	579	consensus TPR repeat-containing protein [General f	99.19
PRK15359	144	type III secretion system chaperone protein SscB;	99.17
PRK10803	263	tol-pal system protein YbgF; Provisional	99.17
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.15
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.14
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.14
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.13
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.13
KOG0553	304	consensus TPR repeat-containing protein [General f	99.13
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.12
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.12
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.12
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.1
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.1
PLN02789	320	farnesyltranstransferase	99.08
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.07
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.07
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.07
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.06
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.05
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.05
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.04
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.04
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.04
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.03
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.01
PF13512	142	TPR_18: Tetratricopeptide repeat	99.0
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.99
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.98
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.94
KOG1125	579	consensus TPR repeat-containing protein [General f	98.94
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.9
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	98.89
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.89
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.88
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.88
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.88
PF13371	73	TPR_9: Tetratricopeptide repeat	98.87
KOG4555	175	consensus TPR repeat-containing protein [Function	98.86
KOG2076	895	consensus RNA polymerase III transcription factor	98.86
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.85
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.84
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.83
KOG2076	895	consensus RNA polymerase III transcription factor	98.82
PF12688	120	TPR_5: Tetratrico peptide repeat	98.82
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.81
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.81
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.8
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.8
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.79
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.78
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.78
KOG2003	840	consensus TPR repeat-containing protein [General f	98.77
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.77
PF13371	73	TPR_9: Tetratricopeptide repeat	98.76
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.75
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.75
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.72
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.71
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.69
PRK14574	822	hmsH outer membrane protein; Provisional	98.69
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.68
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.67
PRK11906	458	transcriptional regulator; Provisional	98.67
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.65
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.64
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.64
KOG1129	478	consensus TPR repeat-containing protein [General f	98.62
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.59
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.59
PRK14574	822	hmsH outer membrane protein; Provisional	98.58
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.56
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.55
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.54
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.53
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.52
KOG1129	478	consensus TPR repeat-containing protein [General f	98.52
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.5
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.49
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.47
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.47
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.46
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.45
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.44
PRK11906	458	transcriptional regulator; Provisional	98.44
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.43
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.42
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.4
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.39
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.38
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.36
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.36
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.36
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.34
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.33
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.32
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.3
KOG2003	840	consensus TPR repeat-containing protein [General f	98.3
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.3
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.29
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.27
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.26
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.24
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.22
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.22
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.21
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.15
PRK10803	263	tol-pal system protein YbgF; Provisional	98.14
PF13431	34	TPR_17: Tetratricopeptide repeat	98.14
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.13
PF13428	44	TPR_14: Tetratricopeptide repeat	98.1
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.1
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.09
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.08
PF13428	44	TPR_14: Tetratricopeptide repeat	98.07
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.04
PF12688	120	TPR_5: Tetratrico peptide repeat	98.04
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.03
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.02
KOG4234	271	consensus TPR repeat-containing protein [General f	97.99
PF13431	34	TPR_17: Tetratricopeptide repeat	97.98
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.96
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.94
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.93
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.9
PRK15331	165	chaperone protein SicA; Provisional	97.89
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.84
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.84
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.83
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.82
KOG1310	758	consensus WD40 repeat protein [General function pr	97.82
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.82
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.78
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.76
PF13512	142	TPR_18: Tetratricopeptide repeat	97.72
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.72
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.7
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.69
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.68
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.68
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.61
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.59
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.59
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.58
KOG2471	696	consensus TPR repeat-containing protein [General f	97.58
KOG3364	149	consensus Membrane protein involved in organellar	97.56
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.56
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.46
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.46
PRK10941	269	hypothetical protein; Provisional	97.45
KOG4555	175	consensus TPR repeat-containing protein [Function	97.4
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.38
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.32
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.32
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.31
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.3
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.29
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.24
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.24
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.22
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.19
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.17
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.13
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.12
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.12
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.03
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.0
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.0
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.98
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.98
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.98
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.98
PRK10941	269	hypothetical protein; Provisional	96.94
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.94
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.89
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.87
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.86
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.85
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.79
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.79
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.78
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.76
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.71
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.69
KOG4814	872	consensus Uncharacterized conserved protein [Funct	96.67
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.66
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.61
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.61
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.59
KOG1586	288	consensus Protein required for fusion of vesicles	96.58
PLN03218	1060	maturation of RBCL 1; Provisional	96.57
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.57
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.56
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.5
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.48
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.48
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.45
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.44
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.42
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.41
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.4
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.37
PLN03218	1060	maturation of RBCL 1; Provisional	96.36
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.35
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.35
KOG1585	308	consensus Protein required for fusion of vesicles	96.34
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.29
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.24
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.2
PLN03077	857	Protein ECB2; Provisional	96.19
KOG1586	288	consensus Protein required for fusion of vesicles	96.19
PRK04841	903	transcriptional regulator MalT; Provisional	96.18
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.17
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.14
KOG2471	696	consensus TPR repeat-containing protein [General f	96.13
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.13
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.1
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.07
PRK04841	903	transcriptional regulator MalT; Provisional	96.05
PLN03077	857	Protein ECB2; Provisional	95.96
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.87
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.82
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	95.6
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.59
KOG1585	308	consensus Protein required for fusion of vesicles	95.58
KOG3364	149	consensus Membrane protein involved in organellar	95.5
COG2912	269	Uncharacterized conserved protein [Function unknow	95.49
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.46
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.38
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.17
COG5191	435	Uncharacterized conserved protein, contains HAT (H	95.02
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.92
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.89
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	94.85
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.85
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	94.72
COG2912	269	Uncharacterized conserved protein [Function unknow	94.55
KOG0529	421	consensus Protein geranylgeranyltransferase type I	94.42
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.42
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.29
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.15
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	94.14
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.95
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.92
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.9
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	93.79
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.78
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.7
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.39
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.29
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.2
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.14
KOG2047	835	consensus mRNA splicing factor [RNA processing and	93.12
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	93.12
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.1
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	93.06
KOG1550	552	consensus Extracellular protein SEL-1 and related	92.95
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.83
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.82
KOG2300	629	consensus Uncharacterized conserved protein [Funct	92.79
KOG2300	629	consensus Uncharacterized conserved protein [Funct	92.27
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.09
KOG2581	493	consensus 26S proteasome regulatory complex, subun	91.86
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	91.59
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	91.56
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.49
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.47
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.33
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.3
KOG2047	835	consensus mRNA splicing factor [RNA processing and	91.23
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	91.21
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.16
KOG2041	1189	consensus WD40 repeat protein [General function pr	91.04
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.63
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.56
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	90.47
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.28
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.23
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.8
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	89.78
COG5191	435	Uncharacterized conserved protein, contains HAT (H	89.74
KOG0529	421	consensus Protein geranylgeranyltransferase type I	89.63
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	89.56
COG3629	280	DnrI DNA-binding transcriptional activator of the	89.25
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	89.18
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	89.13
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.92
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	88.55
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.39
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.37
KOG1310	758	consensus WD40 repeat protein [General function pr	87.91
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	87.53
KOG4814	872	consensus Uncharacterized conserved protein [Funct	87.52
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.18
KOG4014	248	consensus Uncharacterized conserved protein (conta	87.18
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	86.89
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	86.52
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	86.45
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	86.21
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	86.13
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.85
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	85.79
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	85.72
COG4941	415	Predicted RNA polymerase sigma factor containing a	84.35
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	83.97
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	83.91
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	83.79
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	83.47
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	83.34
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	82.68
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.39
PRK15490	578	Vi polysaccharide biosynthesis protein TviE; Provi	82.27
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	82.19
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.14
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	81.72
KOG1258	577	consensus mRNA processing protein [RNA processing	80.91
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	80.75
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	80.71
COG3947	361	Response regulator containing CheY-like receiver a	80.55
COG3947	361	Response regulator containing CheY-like receiver a	80.33

>PLN02722 indole-3-acetamide amidohydrolase

Probab=100.00  E-value=6.2e-87  Score=684.76  Aligned_cols=406  Identities=59%  Similarity=1.009  Sum_probs=335.3

Q ss_pred             hccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEE
Q 008025           29 NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCI  108 (580)
Q Consensus        29 ~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~  108 (580)
                      ..|+.+|||++.....    ...+...|||+||||+|||+|+++|++||+||+.+.+.+.++.+|+++|+||++||||++
T Consensus         2 ~~~~~~~a~~~~~~~~----~~~~~~~gpL~GvPiaVKD~~~v~G~~Tt~GS~~~~~~~~~~~~dA~vV~rL~~AGAiil   77 (422)
T PLN02722          2 ATNPDYGAFMEKFVLS----PTSSSHDLPLHGLTFAVKDIFDVEGYVTGFGNPDWARTHSAATSTAPAVLAVLRGGATCV   77 (422)
T ss_pred             CcCCCCCcceeecccc----CCCCCCCCCCCCCeEEEEcccccCCCccCCCCHHHHhcCCCCCCChHHHHHHHHCCCEEE
Confidence            3688999999875331    122246799999999999999999999999999887522356799999999999999999


Q ss_pred             EeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccc
Q 008025          109 GKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVS  188 (580)
Q Consensus       109 gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~  188 (580)
                      ||||||||+++.+|+|.+||+|+||||++|+|||||||||||||+|++|+|+|||||||||||||||||||||||+||||
T Consensus        78 GKTn~~Efa~~~~g~n~~~G~t~NP~~~~r~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cGvvG~KPT~G~vp  157 (422)
T PLN02722         78 GKTIMDEMAYSINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCGIFGFRPSHGAVS  157 (422)
T ss_pred             EEechhhHhhCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcceEEEecCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCcccCCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcc
Q 008025          189 HMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQV  266 (580)
Q Consensus       189 ~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~v  266 (580)
                      +.|++|+++++|++|||+|+++|++.+++++.+.+..+...+.++.+..+.+......++++.+.++++++.+.  |+.+
T Consensus       158 ~~G~~pla~sld~~G~~ar~v~D~a~~~~~l~g~~~~d~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v  237 (422)
T PLN02722        158 TVGVIPMAQSFDTVGWFARDPVILKRVGHVLLQQPDVNPIKPSQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIV  237 (422)
T ss_pred             CCCCCcccCCCCcccceeCCHHHHHHHHHHHcCCCCCCCcCCceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCee
Confidence            99999999999999999999999999999998776555566778887755432112234678888888888776  5554


Q ss_pred             cccccccccccccCCchhhhhh-----------hhhhHHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCC
Q 008025          267 LKHENLGEYFDSKVPSLKGFHK-----------TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEIS  335 (580)
Q Consensus       267 v~~~~l~~~~~~~~p~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s  335 (580)
                       +.+++...++...+.+..+..           ....+...+..+..++....+..|+......+++.++.+++.|..++
T Consensus       238 -~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~s  316 (422)
T PLN02722        238 -KHVNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAMRLLQRYEFKINHGEWITAVKPEFGPGISERIWEAVRTT  316 (422)
T ss_pred             -eecchhHHHHHhHHHHHHHhhcccccceecchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHhccCC
Confidence             223333222222222211100           01112234444666677777888888777889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCC
Q 008025          336 ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCP  415 (580)
Q Consensus       336 ~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp  415 (580)
                      ..+|.++++.|.++++.+.++|+++|+||+||+|.+||+++........++..++.||.++|++|+|+++||++..+|+|
T Consensus       317 ~~~y~~a~~~r~~~~~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glP  396 (422)
T PLN02722        317 EEKIDACQSVKTELRAALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLHDNLP  396 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCCCCCC
Confidence            99999999999999999999999999999999999999987543333344445667899999999999999999888999


Q ss_pred             cccceecccCCChHHHHHHHHHHH
Q 008025          416 TSVSFIARHGGDRFLLDTVQNMYA  439 (580)
Q Consensus       416 ~g~q~~~~~~~d~~ll~la~~le~  439 (580)
                      +|+|+++++++|..++.++..+..
T Consensus       397 vGlqivg~~~~D~~lL~~a~~l~~  420 (422)
T PLN02722        397 VSVSLLAKHGSDGFLLNLVESLYG  420 (422)
T ss_pred             EEEEEECCCCChHHHHHHHHHHHh
Confidence            999999999999999999988764

>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.7e-87  Score=689.98  Aligned_cols=417  Identities=26%  Similarity=0.334  Sum_probs=336.5

Q ss_pred             HHHHhhhhhhHHHHHH-----HH----h--hhccCCccceeeccccCCCC--CC-------CCCCCCCCCCCceeeeecc
Q 008025            9 WVLLGLGLAGILLMTK-----KL----K--KNIKQDFGAFIEKLQLLPPP--QP-------LPPKAPHPLTGLSFAVSDL   68 (580)
Q Consensus         9 ~~~~~~~l~~~~~~~~-----~~----~--~~~~~~~~a~~~~~~~~~~~--~~-------~~~~~~gpl~Gvp~~vKD~   68 (580)
                      ...++..|++++..+|     ++    +  ++.||.+|+|++...+.+..  ++       ..+...|||+||||+||||
T Consensus         5 ~~~~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~~~g~~~gpL~GvPiavKDn   84 (475)
T COG0154           5 TELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARLAAGEPLGPLAGVPIAVKDN   84 (475)
T ss_pred             hhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHHhcCCCCCCcCCceEEEeec
Confidence            4456777777744444     32    3  38899999999998886543  22       2345578999999999999


Q ss_pred             cccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q 008025           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (580)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsa  148 (580)
                      |+|+|++||+||+.+.+  ++|++|+++|+||+++|||++||||||||+|+.+|+|++||+|+||||++|+|||||||||
T Consensus        85 ~~~~G~~Tt~gS~~l~~--~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~g~~~~~s~~G~t~NP~~~~~~pGGSSgGSA  162 (475)
T COG0154          85 IDTAGLPTTAGSKALED--YVPPYDATVVERLRAAGAVILGKTNMDEFAMGSSTENSAFGPTRNPWNLERVPGGSSGGSA  162 (475)
T ss_pred             cccCCCccCccChhhcc--CCCCcCcHHHHHHHHCCCEEEeecCCchhhcCCCCCCCCCCCCCCCCCCCCCCCcCchHHH
Confidence            99999999999999997  7889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008025          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--  226 (580)
Q Consensus       149 aaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~--  226 (580)
                      ||||+|++|+|+|||||||||+|||||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+  
T Consensus       163 aAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV~D~a~l~~v~~g~D~~d~~  242 (475)
T COG0154         163 AAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTVRDAALLLDVIAGPDPRDSP  242 (475)
T ss_pred             HHHHhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCHHHHHHHHHHHcCCCCcccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988753322  


Q ss_pred             --------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhh-hhhh
Q 008025          227 --------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKG-FHKT  289 (580)
Q Consensus       227 --------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~-~~~~  289 (580)
                                    ..++.||++..+.... ...++++.++++++++.|+  |++|++         ..+|.+.. +.. 
T Consensus       243 ~~~~~~~~~~~~~~~~~~lrigv~~~~~~~-~~~~~~v~~~~~~a~~~l~~~Ga~v~~---------v~lp~~~~~~~~-  311 (475)
T COG0154         243 LPPPPPVPPALAGKDLKGLRIGVPKELGGG-GPLDPDVRAAFEAAVKALEAAGAEVVE---------VSLPLLSDDYAL-  311 (475)
T ss_pred             cccccCccchhhccCCCCcEEEEECccccc-CCCcHHHHHHHHHHHHHHHHCCCEEEe---------ccCCchhhhhhh-
Confidence                          1233467776665432 2246799999999999986  666632         22332211 100 


Q ss_pred             hhhHHHHHH-HHHHHHHhhhhHH--HHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHH---HHHHHhhcCCCCEE
Q 008025          290 NGELKNVMR-LIQRYEFKNNHNE--WIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM---RSAISSLLKDDGIL  363 (580)
Q Consensus       290 ~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~---~~~~~~~~~~~Dvl  363 (580)
                           ..+. .......+.....  +.......+++++++++..|..++..+|..+...|...   ++.+.++|++||+|
T Consensus       312 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ri~~G~~~~~~~~~~a~~~~~~~~~i~~~~~~~f~~~D~l  386 (475)
T COG0154         312 -----AAYYLARFDGERYGLRAADLYGKTRAEGFGPEVKRRIMLGTYLLSAGYYDAYYRRAQKTLIRRAFDKLFEEVDVL  386 (475)
T ss_pred             -----hHHHHHHhhhhhhhhcchhhhhhhhhhcccHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence                 0010 0000011111111  44555678999999999999999999999999888555   99999999999999


Q ss_pred             EEcCCCCCCCCCCC-CC-CchHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHH
Q 008025          364 VTPTTAYPPPKLGG-KE-MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (580)
Q Consensus       364 l~Pt~~~~ap~~~~-~~-~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~  440 (580)
                      |+||+|.++|++++ .. ......+..+..||.++|++|+|++|||+++. +|+|+|+|+++++++|..+++++..+|+.
T Consensus       387 l~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlqlig~~~~d~~LL~~a~~~E~~  466 (475)
T COG0154         387 LTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTADGLPVGLQLIGPAFDDATLLRLAAALEQA  466 (475)
T ss_pred             EeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCCCCCeeEEEecCCCCHHHHHHHHHHHHHh
Confidence            99999999999997 21 11112222233589999999999999999998 59999999999999999999999999987


Q ss_pred             HHH
Q 008025          441 LQE  443 (580)
Q Consensus       441 l~~  443 (580)
                      ...
T Consensus       467 ~~~  469 (475)
T COG0154         467 LGW  469 (475)
T ss_pred             hCC
Confidence            654

>PRK09201 amidase; Provisional

Probab=100.00  E-value=2.7e-85  Score=685.49  Aligned_cols=410  Identities=26%  Similarity=0.354  Sum_probs=336.5

Q ss_pred             HHHHhhhhhhHHHH-----HHHH----h--hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccc
Q 008025            9 WVLLGLGLAGILLM-----TKKL----K--KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFD   70 (580)
Q Consensus         9 ~~~~~~~l~~~~~~-----~~~~----~--~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~   70 (580)
                      ..+++.+|+++++.     .|++    +  ++.||.+|||++..+|+++++++       .++..|||+||||+|||+|+
T Consensus         5 ~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~   84 (465)
T PRK09201          5 SSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAARAAGEPLGPLAGVPFAVKNLFD   84 (465)
T ss_pred             ccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCceEEEEeccc
Confidence            34578888888544     4442    3  37899999999998876655442       35668999999999999999


Q ss_pred             cCCcccCCCChhhhhcCCCC-CCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHH
Q 008025           71 IEGYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAV  149 (580)
Q Consensus        71 ~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaa  149 (580)
                      ++|++||+||+.+.+  +++ ++|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||+
T Consensus        85 v~G~~tt~Gs~~~~~--~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAa  162 (465)
T PRK09201         85 VAGLTTLAGSKINRD--RPPATRDATAVRRLEAAGAVLVGALNMDEYAYGFTTENSHYGATRNPHDLTRIAGGSSGGSAA  162 (465)
T ss_pred             cCCcccCcCChhhcc--CCCCCCChHHHHHHHHCCCEEEEecChHHHhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Confidence            999999999999986  566 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc---
Q 008025          150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---  226 (580)
Q Consensus       150 aVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~---  226 (580)
                      +||+|++|+|+|||||||||||||||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+   
T Consensus       163 aVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~d~~d~~~  242 (465)
T PRK09201        163 AVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSVADLALVYDVLQGPDPQDPFQ  242 (465)
T ss_pred             HHHcCCCceEEecCCCCcchhhhHHhCceeeeCCCCccCCCCCCCcccccCcccCccCCHHHHHHHHHHhcCCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999987643211   


Q ss_pred             --------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHhCCcccccccccccccccCCchhhhhhhhhh
Q 008025          227 --------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGE  292 (580)
Q Consensus       227 --------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~  292 (580)
                                    ..++.||++..+.+  ....++++.++++++++.| ++.+  .++        .|....       
T Consensus       243 ~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L-~~~~--~v~--------~~~~~~-------  302 (465)
T PRK09201        243 ADRPAEPTAPLLDRGAEGLRIAVLGGYF--AQWADPEARAAVDRVAKAL-GATR--EVE--------LPEAAR-------  302 (465)
T ss_pred             ccCCCcchhhhhccCCCCCEEEEECccc--cCCCCHHHHHHHHHHHHHc-cCce--eec--------CCchhH-------
Confidence                          11335666654432  1235789999999999987 3211  111        122111       


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCC
Q 008025          293 LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPP  372 (580)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~a  372 (580)
                      ....+..+...+....+..++......+++.++.++..+..++..+|.++++.|+.+++.|.++|+++|+||+||++.++
T Consensus       303 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a  382 (465)
T PRK09201        303 ARAAAFIITASEGGNLHLPALRTRPQDFDPASRDRLLAGAMLPAAWYVQAQRFRRWFRQAVLELFEHVDVLIAPATPCSA  382 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhcCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCC
Confidence            11112223334555556666666667899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC---ch-HHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHH
Q 008025          373 PKLGGKEM---LS-EDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (580)
Q Consensus       373 p~~~~~~~---~~-~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~  440 (580)
                      |+++....   .. ......+..||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.
T Consensus       383 p~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQivg~~~~D~~lL~~A~~le~~  454 (465)
T PRK09201        383 PLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRTPGGLPIGVQLIAAPWREDLALRAAAALEQQ  454 (465)
T ss_pred             CcccccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCCCCCcCeEEEEECCCCCHHHHHHHHHHHHhh
Confidence            99975321   11 1112334458999999999999999998889999999999999999999999998853

>TIGR02715 amido_AtzE amidohydrolase, AtzE family

Probab=100.00  E-value=4.4e-85  Score=682.28  Aligned_cols=406  Identities=26%  Similarity=0.370  Sum_probs=331.7

Q ss_pred             hhhhhhH-----HHHHHHH----h--hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCc
Q 008025           13 GLGLAGI-----LLMTKKL----K--KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGY   74 (580)
Q Consensus        13 ~~~l~~~-----~~~~~~~----~--~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~g~   74 (580)
                      +.+|+++     +++.|++    +  ++.||.+|||++..+++++++++       +++..|||+||||+|||+|+++|+
T Consensus         2 ~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~v~G~   81 (452)
T TIGR02715         2 IVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADLAAGSPLGPLAGVPFAVKNLFDVAGL   81 (452)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccCCc
Confidence            4556666     4445543    3  37899999999988776655442       356679999999999999999999


Q ss_pred             ccCCCChhhhhcCCCC-CCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhc
Q 008025           75 VTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA  153 (580)
Q Consensus        75 ~tt~Gs~~~~~~~~~~-~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaa  153 (580)
                      +||+||+.+.+  ++| .+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+||||||||||+||+
T Consensus        82 ~tt~Gs~~~~~--~~p~~~dA~vV~rL~~AGAii~GkTn~~Ef~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAa  159 (452)
T TIGR02715        82 TTLAGAKINRD--LAPAKRDATLVQRLSAAGAVLVGALNMDEFAYGFTTENAHYGPTRNPHDLTRIAGGSSGGSAAAVAA  159 (452)
T ss_pred             eeCcCChhhcc--CCCCCCCHHHHHHHHHCCCEEEEeccCHhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHC
Confidence            99999999886  566 799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc-------
Q 008025          154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-------  226 (580)
Q Consensus       154 g~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-------  226 (580)
                      |++|+|+|||||||||||||||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+       
T Consensus       160 g~~~~alGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~~~~d~~~~~~p  239 (452)
T TIGR02715       160 GLVPFSLGSDTNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSVEDLALAYDVMQGPDPQDPFCTDRP  239 (452)
T ss_pred             CCCceEEeeCCCCcchhhHHHhCceeeeCCCCCccCCCCCCCccccCcccCeeCCHHHHHHHHHHhcCCCCCCcccccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999987643211       


Q ss_pred             ----------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHhCCcccccccccccccccCCchhhhhhhhhhHHHH
Q 008025          227 ----------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV  296 (580)
Q Consensus       227 ----------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~  296 (580)
                                ..++.||++..+.+  ....++++.++++++++.|. ..++        +  ..|....       ....
T Consensus       240 ~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~-~~~~--------v--~~~~~~~-------~~~~  299 (452)
T TIGR02715       240 AEPTVPLLPAGISGLRIAVLGGWF--QQNADPEALAAVGRVAKALG-ATTI--------V--ELPDAER-------ARAA  299 (452)
T ss_pred             CcchhhhhhcCCCCCEEEEECccc--cCCCCHHHHHHHHHHHHhcC-Ceee--------e--cCCchHH-------HHHH
Confidence                      12345666654432  12357899999999998873 2110        1  1222211       1111


Q ss_pred             HHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCC
Q 008025          297 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG  376 (580)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~  376 (580)
                      +..+...+....+..++......+++.++.++..+..++..+|.++++.|+.+++.+.++|+++|+||+||+|.+||+++
T Consensus       300 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~  379 (452)
T TIGR02715       300 AFVITASEGGNLHLDALRTRPQDFDPATRDRLLAGALLPASWYAQAQRFRHWFRDAIRELFQRVDVLIAPATPCSAPLIG  379 (452)
T ss_pred             HHHHHHHHHHHHHHHHhhhchhhcCHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcCc
Confidence            12223334444455666666678999999999999889999999999999999999999999999999999999999987


Q ss_pred             CCCC--c--hHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHH
Q 008025          377 GKEM--L--SEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (580)
Q Consensus       377 ~~~~--~--~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~  440 (580)
                      ....  .  .......+..||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.
T Consensus       380 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~glPvGlQivg~~~~D~~lL~~a~~le~~  447 (452)
T TIGR02715       380 QETMIIDGVPVPVRANLGIFTQPISFAGLPVLAAPLPRPGRLPIGVQLIAAPWREDLCLRAAAVLERQ  447 (452)
T ss_pred             ccccccCccchhhhhhHHhcCccchhcCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            5311  1  11112234458999999999999999999889999999999999999999999998864

Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.

>PRK05962 amidase; Validated

Probab=100.00  E-value=1.5e-84  Score=672.00  Aligned_cols=397  Identities=24%  Similarity=0.354  Sum_probs=328.5

Q ss_pred             hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCC-CCChHHHHH
Q 008025           28 KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAA-SRTSTVVST   99 (580)
Q Consensus        28 ~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~-~~da~~v~~   99 (580)
                      +++||.+|||++...+.++++++       .++..|||+||||+|||+|+|+|++||+||+.+.+  +++ .+|+++|+|
T Consensus         9 ~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~--~~~~~~dA~vV~r   86 (424)
T PRK05962          9 AARAGEEHVFSKLYAERARAEADAADARRRAGRSLGPLDGRIVSIKDLFDVAGEPTLAGSVIRRD--APPAGADALIVQR   86 (424)
T ss_pred             HhhCCcccEEEEECHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEEeeeecCCcccCCCChhhhc--CCCCcCChHHHHH
Confidence            37899999999988776554432       35668999999999999999999999999999886  566 689999999


Q ss_pred             HHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccc
Q 008025          100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILG  179 (580)
Q Consensus       100 l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~G  179 (580)
                      ||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||||||+|++|+|+|||||||||+||+||||||
T Consensus        87 L~~aGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G  166 (424)
T PRK05962         87 LRNAGAVIIGKTHMTEFAFTPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTGGSVRIPAALNGLVG  166 (424)
T ss_pred             HHHCCCEEEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEEeeCCCCcchhhhHhhCcee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc----CCCCceEEEccchhhhcCCChhHHHHHHH
Q 008025          180 FRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA----QRSPRQIIIADDCFELLKIPADRVVQVVI  255 (580)
Q Consensus       180 lkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~  255 (580)
                      ||||+||+|+.|++|+++++|++|||+|+++|++.+++++.+.+..+    ...+.||++..+.+  ....++++.++++
T Consensus       167 lKPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~~~~~~vl~g~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~  244 (424)
T PRK05962        167 FKPTARRIPLEGAFPLSPSLDSIGPLARTVADCAAADAVMAGEKPIPLEVLPVAGLRIGLPKGYL--LADMEPDVAAAFE  244 (424)
T ss_pred             eecCCCceeCCCcccCccccCccccccCCHHHHHHHHHHHcCCCCCcccccCcCCcEEEEEcccc--cccCCHHHHHHHH
Confidence            99999999999999999999999999999999999999987654321    22445676665432  2235789999999


Q ss_pred             HHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhc
Q 008025          256 KSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE  333 (580)
Q Consensus       256 ~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  333 (580)
                      ++++.|.  |++|++ ++        .|.+.....    .......+...+....+..|+......+++.++.++..+..
T Consensus       245 ~a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  311 (424)
T PRK05962        245 ASLAALEKAGARIAD-LA--------IDDLIARLA----EATRIGSIAGIEASHIHADWLADLDANVDIRVKRPLSRRIK  311 (424)
T ss_pred             HHHHHHHHCCCEEEE-ec--------cchHHHHHH----HHHHHhHHHHHHHHHHHHHHHhhchhhCCHHHHHHHHhccC
Confidence            9999886  776643 12        122110000    00001122333444455666666667899999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHH---HHHHhhhhhcccccCCceeeeeCcC
Q 008025          334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDY---QNRAFSLLSIASVSGCCQVTVPLGY  410 (580)
Q Consensus       334 ~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~---~~~~~~~t~~~n~~g~P~~~~P~~~  410 (580)
                      ++..+|.++++.|..+++.+.++|+++|+||+||+|.++|+++....+...+   ...++.||.++|++|+|+++||++.
T Consensus       312 ~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa~svP~g~  391 (424)
T PRK05962        312 VPLEAYHRLMRTRAALARAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQFDLCSITLPMPG  391 (424)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCcCccccCCCeEEEECCC
Confidence            9999999999999999999999999999999999999999987643222112   2224458999999999999999985


Q ss_pred             CCCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025          411 YDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (580)
Q Consensus       411 ~~~lp~g~q~~~~~~~d~~ll~la~~le~~l~  442 (580)
                       +|+|+|+|+++++++|..+++++..+|+.+.
T Consensus       392 -~glPvGlqlvg~~~~D~~lL~~a~~le~~l~  422 (424)
T PRK05962        392 -MALPAGLMLTARNGSDRRLLAAAASVEKLLE  422 (424)
T ss_pred             -CCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence             6999999999999999999999999998764

>PRK07487 amidase; Provisional

Probab=100.00  E-value=2e-84  Score=679.57  Aligned_cols=417  Identities=22%  Similarity=0.233  Sum_probs=334.4

Q ss_pred             hhHHHHhhhhhhHHHH-----HHHH----h--hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008025            7 NLWVLLGLGLAGILLM-----TKKL----K--KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL   68 (580)
Q Consensus         7 ~~~~~~~~~l~~~~~~-----~~~~----~--~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~   68 (580)
                      ++..+|+.+|++++..     .|++    +  +++||.+|||++...|+++++++       .++..|||+||||+|||+
T Consensus         4 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~   83 (469)
T PRK07487          4 ELWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAARARGDDPGPLAGVPVTVKVN   83 (469)
T ss_pred             hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHHhcCCCCCCcCCCEEEEecc
Confidence            4677789999998554     4443    3  37899999999988776555432       355679999999999999


Q ss_pred             cccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q 008025           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (580)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsa  148 (580)
                      |+|+|++||+||+.+.+  +++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||
T Consensus        84 ~~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~~GGSSgGsA  161 (469)
T PRK07487         84 VDQAGFATTNGVRLQKD--LIAPADSPVVDNLRKAGAVIIGRTNTPAFSYRWFTDNPLHGRTLNPWDPSLTPGGSSGGAA  161 (469)
T ss_pred             cccCCCccCcchHHhcC--CCCCCchHHHHHHHHCCCEEEEecChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Confidence            99999999999999987  7899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcc----cC-CCCCcccccccCHHHHHHHHHHhcCCC
Q 008025          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP----IS-TSLDTVGWFARDPKILRHVGHVLLQLP  223 (580)
Q Consensus       149 aaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p----~~-~sld~~G~~ar~~~d~~~v~~~l~~~~  223 (580)
                      ||||+|++|+|+|||||||||||||||||||||||+||+|+.|+++    ++ .++|++|||+|+++|++.+++++.+.+
T Consensus       162 aAVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv~D~a~~~~~l~g~d  241 (469)
T PRK07487        162 AAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTVADLRLALAAMAAPD  241 (469)
T ss_pred             HHHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999763    33 478999999999999999999987543


Q ss_pred             ccc----------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhh
Q 008025          224 FAA----------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNG  291 (580)
Q Consensus       224 ~~~----------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~  291 (580)
                      ..+          ...+.||++..+.+.  ...++++.++++++++.|.  |++|++ +       ...|.+...     
T Consensus       242 ~~d~~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~-------~~~~~~~~~-----  306 (469)
T PRK07487        242 PRDPWWVPAPLEGPPRPKRVALCVRPDG--LDVDPEVEAALRDAARRLEDAGWTVEE-V-------DDTPPLREA-----  306 (469)
T ss_pred             CCCCccCCCCccCCCCCcEEEEECCCCC--CCCCHHHHHHHHHHHHHHHHCCCEEEe-c-------CCCCchHHH-----
Confidence            221          124457776654331  2357899999999999986  666532 1       012332211     


Q ss_pred             hHHHHHHHHHHHHHhhhhHHHHHhh-CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCC
Q 008025          292 ELKNVMRLIQRYEFKNNHNEWIESV-KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY  370 (580)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~  370 (580)
                        ...+..+...+....+..++... .+.+.+.++..+..+..++..+|.++++.|+.+++.+.++|+++|+||+||+|.
T Consensus       307 --~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~p~  384 (469)
T PRK07487        307 --AELQERLWLGDGYEALLAAAEAEGDPGALAALRGQRAKARPLDLAGYMNALARRATLTRQWQLFFEDYPLLLMPVSAE  384 (469)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence              11222223334444444444432 244666777777778889999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCchHHHHH--HHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025          371 PPPKLGGKEMLSEDYQN--RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (580)
Q Consensus       371 ~ap~~~~~~~~~~~~~~--~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~l~  442 (580)
                      +||+++........+..  ....+|.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.+.
T Consensus       385 ~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~lL~~a~~lE~~~~  458 (469)
T PRK07487        385 LPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLVGGVPVGVQLVAGRFREDLCLAAGEAIEARGG  458 (469)
T ss_pred             CCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccCCCcceeEEEeCCCCCHHHHHHHHHHHHHhhC
Confidence            99998753222222211  1112577899999999999999989999999999999999999999999987654

>PRK06102 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-84  Score=675.99  Aligned_cols=413  Identities=26%  Similarity=0.360  Sum_probs=333.5

Q ss_pred             HHhhhhhhHHH-----HHHHH----hh--hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccC
Q 008025           11 LLGLGLAGILL-----MTKKL----KK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIE   72 (580)
Q Consensus        11 ~~~~~l~~~~~-----~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~   72 (580)
                      +++.+|+++++     +.|++    +|  +.|+ +|||++..+++++++++       .++..|||+||||+|||+|+++
T Consensus         6 ~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~   84 (452)
T PRK06102          6 KSAAQLAVLIQSGALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARWRAGRSLGLLDGIPIAWKDLFDVA   84 (452)
T ss_pred             cCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCCCeEEEEeccccC
Confidence            46777777744     44442    33  6686 89999988776555442       3567899999999999999999


Q ss_pred             CcccCCCChhhhhcCCCC-CCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCC--CCCCCCCCchhHH
Q 008025           73 GYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAP--SQMPGGSSSGAAV  149 (580)
Q Consensus        73 g~~tt~Gs~~~~~~~~~~-~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~--~~~~GGSSgGsaa  149 (580)
                      |++||+||+.+.+  +++ .+||++|+|||++|||++||||||||+++.+|+|.+||+|+||||+  +|+||||||||||
T Consensus        85 G~~tt~Gs~~~~~--~~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~~~GGSSgGsAa  162 (452)
T PRK06102         85 GSVTTAGSVVLAN--AAPASRDAAVVALLARAGMVSIGRTNMSEFAFSGLGLNPHYGTPVNPRSTDVPRIPGGSSSGSAV  162 (452)
T ss_pred             CCccCcCChhhcc--CCCCCCCHHHHHHHHHCCCEEEEeechHhHhcCCCCCCCCCCCCCCCCCCCCCcCCCCCcHHHHH
Confidence            9999999999886  455 7999999999999999999999999999999999999999999996  7999999999999


Q ss_pred             HHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc---
Q 008025          150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---  226 (580)
Q Consensus       150 aVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~---  226 (580)
                      |||+|++|+|+||||||||||||+||||||||||+||+|+.|++|+++++|++|||+|+++|++.+++++.+.+..+   
T Consensus       163 aVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~  242 (452)
T PRK06102        163 AVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSVRDAVWIDAAMRGLTAPDVVR  242 (452)
T ss_pred             HHHcCCCceEEecCCCCcchhhhHHhCceeEecCCCcccCCCCcccccccCcccCccCCHHHHHHHHHHHcCCCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887653222   


Q ss_pred             -CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHH
Q 008025          227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY  303 (580)
Q Consensus       227 -~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  303 (580)
                       +..+.|+++..+.+.  ...++++.++++++++.|.  |++|++ ++        .|.+.....    +......+...
T Consensus       243 ~~~~~~ri~~~~~~~~--~~~~~~v~~~~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~~~~~~~~~~  307 (452)
T PRK06102        243 RPLAGLRLVVPETVVF--DDAEPGVRAAFEAAVERLQAAGALVER-QA--------FPAFQEILD----LIARHGWLVTA  307 (452)
T ss_pred             cCCCCCEEEEecchhc--ccCCHHHHHHHHHHHHHHHhCCCEEEe-cC--------CccHHHHHH----HHHHHHHHHHH
Confidence             223456666544321  2357899999999999986  666532 22        233221111    00111222233


Q ss_pred             HHhhhhHHHHHh-hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCch
Q 008025          304 EFKNNHNEWIES-VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS  382 (580)
Q Consensus       304 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~  382 (580)
                      +.+..+..++.. ....+.+.++.++..+..++..+|.++.+.|..+++.+.++|+ +|+||+||+|.++|+++......
T Consensus       308 e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~  386 (452)
T PRK06102        308 EAFALHQERLDGPDAARMDPRVVKRTRLGRKITASDYIALLEARERLIAQVTRELG-GALLATPTVAHVAPPLAPLEADD  386 (452)
T ss_pred             HHHHHHHHHhhccchhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHc-CCEEEeCCCCCCCCCccccccCc
Confidence            444445555544 3457899999999999999999999999999999999999999 89999999999999987532111


Q ss_pred             HHH---HHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025          383 EDY---QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (580)
Q Consensus       383 ~~~---~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~l~  442 (580)
                      ..+   ...++.||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+.+.
T Consensus       387 ~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glPvGlQivg~~~~D~~lL~~a~~le~~l~  450 (452)
T PRK06102        387 DLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMPVGLLLSAPAGRDERLLRAALAVEAVIR  450 (452)
T ss_pred             hhhhhhhhhhhhcCccccccCCCeEEEecCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            111   22344589999999999999999986 7999999999999999999999999987663

>PRK08310 amidase; Provisional

Probab=100.00  E-value=1.2e-83  Score=659.01  Aligned_cols=387  Identities=39%  Similarity=0.658  Sum_probs=323.4

Q ss_pred             CCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEec
Q 008025           32 QDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKT  111 (580)
Q Consensus        32 ~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt  111 (580)
                      +.+||||...+.     ...++..|||+||||+|||+|+++|++||+||+.|.+...++++|+++|+|||++|||++|||
T Consensus         5 ~~~~a~~~~~~~-----~~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~aGAii~GKT   79 (395)
T PRK08310          5 DPFNAFIAKPDK-----PLPHAASGPLAGLRFAVKDVFDVAGYVTGCGNPDWLAESPVATRTAPAVEKLLAAGARFVGKT   79 (395)
T ss_pred             CccccccccCCC-----CCCCCCCCCcCCCeEEEeeccccCCCccCCCCHHHHhcCCCCCCCHHHHHHHHHCCCEEEEec
Confidence            678999987543     122467899999999999999999999999999985433577899999999999999999999


Q ss_pred             cccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCC
Q 008025          112 VVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMG  191 (580)
Q Consensus       112 ~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G  191 (580)
                      |||||+++.+|+|.+||+|+||||++|+|||||||||||||+|++|+|+|||||||||+||+||||||||||+||+|+.|
T Consensus        80 n~~E~~~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv~G~KPT~Grvs~~G  159 (395)
T PRK08310         80 QTDELAFSLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGLYGLRPTHGRISLEG  159 (395)
T ss_pred             cchHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCeeEeecCCCcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCCCCCcccccccCHHHHHHHHHHhcCCCcccCCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCccccc
Q 008025          192 IIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKH  269 (580)
Q Consensus       192 ~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~  269 (580)
                      +.|+++++|++|||+|+++|++.+++++.+.+..+...+.++.+..+.+   ...++++.++++++++.|+  +.++++ 
T Consensus       160 ~~~~~~~~d~~Gp~arsv~D~~~~~~~l~g~~~~~~~~~~ri~~~~~~~---~~~~~~v~~a~~~a~~~L~~~~g~vv~-  235 (395)
T PRK08310        160 VMPLAPSFDTVGWFARDIALLERVGEVLLGDDAQEFPLTQRLLIPVDLF---ALLDPAVRAALEAALARLRPHLGPAKP-  235 (395)
T ss_pred             CcccccCCCeeeeeeCCHHHHHHHHHHHcCCCcccCCcCceEEEecccc---ccCCHHHHHHHHHHHHHHHHhCCceee-
Confidence            9999999999999999999999999998875543333356777765432   2257899999999999985  223322 


Q ss_pred             ccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 008025          270 ENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEM  349 (580)
Q Consensus       270 ~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~  349 (580)
                      ++..      ...+..       +...+..+...+.+..+..+++.....+++.++.+++.+..++..+|.++.+.|+.+
T Consensus       236 ~~~~------~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~  302 (395)
T PRK08310        236 ASVP------PLSLDE-------WYEAFRVLQAAEAWETHGAWISSGNPQLGPGVADRFAAGAEVTADQVEAARARRAAF  302 (395)
T ss_pred             ecCC------cccHHH-------HHHHHHHHHHHHHHHHHHHHHHhchhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            1110      001111       112222333344455566666666677999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChH
Q 008025          350 RSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRF  429 (580)
Q Consensus       350 ~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~  429 (580)
                      ++.+.++|+++|+||+||++.+||+++........+...++.||.++|++|+|+++||++..+|+|+|+|+++++++|..
T Consensus       303 ~~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~~~glPvglQivg~~~~D~~  382 (395)
T PRK08310        303 ARELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLASVDGAPFGLSLIGPRGSDRS  382 (395)
T ss_pred             HHHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEEECCCCCCCCEEEEEECCCCCHHH
Confidence            99999999999999999999999998765333333333445689999999999999999988999999999999999999


Q ss_pred             HHHHHHHHHHH
Q 008025          430 LLDTVQNMYAS  440 (580)
Q Consensus       430 ll~la~~le~~  440 (580)
                      +++++..+|++
T Consensus       383 lL~~a~~le~~  393 (395)
T PRK08310        383 LLALAQTIAAA  393 (395)
T ss_pred             HHHHHHHHHhh
Confidence            99999998865

>PRK06169 putative amidase; Provisional

Probab=100.00  E-value=3.5e-84  Score=678.03  Aligned_cols=415  Identities=20%  Similarity=0.237  Sum_probs=334.3

Q ss_pred             chhHHHHhhhhhhHHHH-----HHHH----hh--hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeec
Q 008025            6 ANLWVLLGLGLAGILLM-----TKKL----KK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSD   67 (580)
Q Consensus         6 ~~~~~~~~~~l~~~~~~-----~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD   67 (580)
                      +++..+++.+|+++++.     .|++    +|  +.||.+|||++...+.++++++       .+...|||+||||+|||
T Consensus         2 ~~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD   81 (466)
T PRK06169          2 TDLADLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERWRRGEPCGLLDGVPVSIKD   81 (466)
T ss_pred             cchhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHHhcCCCCCCcCCceEEEec
Confidence            35667788898888554     4443    33  7899999999988776554432       35567999999999999


Q ss_pred             ccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 008025           68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA  147 (580)
Q Consensus        68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGs  147 (580)
                      +|+++|++||+||+.+.+. .++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+||||||||
T Consensus        82 ~~~v~G~~tt~Gs~~~~~~-~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs  160 (466)
T PRK06169         82 IFLTRGWPTLRGSRAIDAD-GPWDVDAPAVARLREAGAVLLGKTTTPEFGWKGVTDSPLYGITRNPWDTRLTAGGSSGGA  160 (466)
T ss_pred             ccccCCcccCccChhhccC-CCCCCCHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHH
Confidence            9999999999999998852 444799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008025          148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-  226 (580)
Q Consensus       148 aaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-  226 (580)
                      |||||+|++|+|+|||||||||+|||||||||||||+||+|+.|+.|++ ++|++|||+|+++|+..+++++.+.+..+ 
T Consensus       161 AaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv~D~~~~~~~l~g~~~~d~  239 (466)
T PRK06169        161 AAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTVADAALLLDVIARPDARDW  239 (466)
T ss_pred             HHHHHcCCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCHHHHHHHHHHhcCCCCCCC
Confidence            9999999999999999999999999999999999999999999998886 89999999999999999999987543211 


Q ss_pred             ----------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhh
Q 008025          227 ----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHK  288 (580)
Q Consensus       227 ----------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~  288 (580)
                                      ..++.||++..+..  ....++++.++++++++.|.  |++|++ ++         +++...  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~--  305 (466)
T PRK06169        240 SALPPPTTSFLDALDRDVRGLRIAYSPTLG--YVDVDPEVAALVAQAVQRLAALGARVEE-VD---------PGFSDP--  305 (466)
T ss_pred             cccCCCCcchhhhhccCCCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHcCCEEEE-eC---------CCcchH--
Confidence                            12345666654332  12357899999999999986  666532 11         111111  


Q ss_pred             hhhhHHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCC
Q 008025          289 TNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTT  368 (580)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~  368 (580)
                           ...+..+...+....+..+.......+++.++.+++.+..++..+|.++.+.|+.+++.|.++|+++|+||+||+
T Consensus       306 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~  380 (466)
T PRK06169        306 -----VEAFHVLWFAGAARLLRALPPGQRALLDPGLRRIAERGATYSASDYLDATAVRAALGARMGAFHERYDLLLTPTL  380 (466)
T ss_pred             -----HHHHHHHHHHHHHHHHHHhhhcchhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCC
Confidence                 011111111222222333334445678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCch--HHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHHH
Q 008025          369 AYPPPKLGGKEMLS--EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (580)
Q Consensus       369 ~~~ap~~~~~~~~~--~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~l  441 (580)
                      |.+||+++......  ......+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+..
T Consensus       381 ~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~d~~lL~~a~~le~~~  456 (466)
T PRK06169        381 PIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGLQIVGPRHSDDLVLRVARAYEQAL  456 (466)
T ss_pred             CCCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEEEEecCCCcHHHHHHHHHHHHhhc
Confidence            99999987532111  11112334589999999999999999986 799999999999999999999999998653

>PRK07056 amidase; Provisional

Probab=100.00  E-value=5.3e-84  Score=673.72  Aligned_cols=413  Identities=26%  Similarity=0.351  Sum_probs=338.2

Q ss_pred             HhhhhhhHHH-----HHHHH----hh--hccCC-ccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccC
Q 008025           12 LGLGLAGILL-----MTKKL----KK--NIKQD-FGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIE   72 (580)
Q Consensus        12 ~~~~l~~~~~-----~~~~~----~~--~~~~~-~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~   72 (580)
                      ++.+|+++++     +.|++    +|  ++||. +|||++...++++++++       .+...|||+||||+|||+|+++
T Consensus         7 ~~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~   86 (454)
T PRK07056          7 TLAALAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALRAAGAAPSPLAGIPVSVKDLFDVA   86 (454)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHHhCCCCCCCcCCCeEEEEeeeccC
Confidence            6777777754     44442    33  67874 99999988776555432       3566799999999999999999


Q ss_pred             CcccCCCChhhhhcCCCC-CCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCC----CCCCCCCCCCchh
Q 008025           73 GYVTGFGHPEWARTHSAA-SRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPA----APSQMPGGSSSGA  147 (580)
Q Consensus        73 g~~tt~Gs~~~~~~~~~~-~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~----~~~~~~GGSSgGs  147 (580)
                      |++||+||+.+.+  +++ ++||++|+|||++|||++||||||||+++.+|+|.+||+|+|||    |++|+||||||||
T Consensus        87 G~~tt~Gs~~~~~--~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~~~~~GGSSgGs  164 (454)
T PRK07056         87 GQVTRAGSRVLAD--APPAAADAPAVARLRRAGAVLIGRTNMTEFAFSGLGLNPHYGTPRNPWRRDVGDGRIPGGSSSGA  164 (454)
T ss_pred             CCccCCCChhhcc--CCCCCCCHHHHHHHHHCCCEEEEeccchhHhhCCCCCCCCCCCCCCCCCCCCCCCcCCCCcchHH
Confidence            9999999999986  566 69999999999999999999999999999999999999999999    8999999999999


Q ss_pred             HHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc-
Q 008025          148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-  226 (580)
Q Consensus       148 aaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-  226 (580)
                      |||||+|++|+|+|||||||||+||+||||||||||+||+|+.|++|+++++|++|||+|+++|++.+++++.+.++.+ 
T Consensus       165 AaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~d~  244 (454)
T PRK07056        165 AVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSVACCALVDAVLAGEEPVVP  244 (454)
T ss_pred             HHHHHcCCCceEEeeCCCCccccchHhhCceeeccCCCccCCCCcccCccccCcccCccCCHHHHHHHHHHhcCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988765433 


Q ss_pred             ---CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHH
Q 008025          227 ---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQ  301 (580)
Q Consensus       227 ---~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  301 (580)
                         +.++.||++..+.+  ....++++.++++++++.|.  |++|++ ++        .|.+.....    +. ....+.
T Consensus       245 ~~~~~~~lrig~~~~~~--~~~~~~~v~~~~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~~----~~-~~~~~~  308 (454)
T PRK07056        245 AARPLEGLRLAVPTTVV--LDGLDATVAAAFERALKRLSAAGAIIEE-IA--------FPELAELAE----IN-AKGGFS  308 (454)
T ss_pred             ccccccCcEEEEcchhh--ccCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CcchHHHHH----HH-HhhhHH
Confidence               22445677665432  12357899999999999986  776632 22        222221111    00 001122


Q ss_pred             HHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCc
Q 008025          302 RYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML  381 (580)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~  381 (580)
                      ..+.+..+..++......+.+.++.++..+..++..+|.++++.|..+++.|.++|+++|+||+||+|.+||+++.....
T Consensus       309 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~  388 (454)
T PRK07056        309 AAESYAWHRPLLARHRDQYDPRVAARILRGEPMSAADYIDLLAARAAWIARAAARLARFDALVMPTVPIVPPRIADLEAD  388 (454)
T ss_pred             HHHHHHHHHHHHhhhhhhCCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCEEEECCCCCCCCCccccccc
Confidence            23444445556666667899999999999999999999999999999999999999999999999999999999764221


Q ss_pred             hHHHH---HHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025          382 SEDYQ---NRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (580)
Q Consensus       382 ~~~~~---~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~l~  442 (580)
                      ...+.   ..++.||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.+.
T Consensus       389 ~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~glPvGlqivg~~~~D~~lL~~a~~le~~l~  452 (454)
T PRK07056        389 DAAFFRTNALLLRNPSLINFLDGCALSLPCHAPGEAPVGLMLAGAPGRDDRLLAIALAVEAVLR  452 (454)
T ss_pred             chhhHHHHHHHhhcCccchhcCCCEEEEeCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            22221   12334899999999999999999888999999999999999999999999997663

>PRK07235 amidase; Provisional

Probab=100.00  E-value=1.4e-82  Score=666.87  Aligned_cols=400  Identities=22%  Similarity=0.270  Sum_probs=320.4

Q ss_pred             hccCCccceeeccccCCCCCC------CCCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHh
Q 008025           29 NIKQDFGAFIEKLQLLPPPQP------LPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVE  102 (580)
Q Consensus        29 ~~~~~~~a~~~~~~~~~~~~~------~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~  102 (580)
                      .+++..|++.+...+.....+      .++...|||+||||+|||||+++|+|||+||+.+.+  ++|.+||++|+||++
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~g~~~gpL~GvPiavKD~i~v~G~ptt~Gs~~~~~--~~p~~DA~vV~rL~~  130 (502)
T PRK07235         53 PVKYPRTPGYRPEAEENPYGAWYVKTSIKGAAEGKLAGKTVALKDNVAVAGVPMMNGSSTLEG--FVPSFDATVVTRLLD  130 (502)
T ss_pred             ccCCCcccccccCcccChhcChhhhhccCCCCCCCcCCceEEEecccccCCcccCccChhhcC--CCCCCCHHHHHHHHH
Confidence            778889999887766554332      246778999999999999999999999999999987  789999999999999


Q ss_pred             CCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCcccccc
Q 008025          103 GGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRP  182 (580)
Q Consensus       103 aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkP  182 (580)
                      |||||+||||||||+++.+|+|++||+|+||||++|+|||||||||||||+|++|+|+||||||||||||+|||||||||
T Consensus       131 AGAii~GKTn~~Ef~~~~~t~n~~~G~t~NP~~~~~~~GGSSgGsAAaVAaG~v~~aiGtDtGGSIRiPAa~cGvvGlKP  210 (502)
T PRK07235        131 AGATIVGKATCEDLCFSGGSHTSDPGPVHNPRDPGYSAGGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKP  210 (502)
T ss_pred             CCCEEEEEecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCCeEEecCCCCCcCccHHHcCcceecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc------------------CCCCceEEEccchhhhcC
Q 008025          183 SYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA------------------QRSPRQIIIADDCFELLK  244 (580)
Q Consensus       183 t~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~------------------~~~~~~l~i~~~~~~~~~  244 (580)
                      |+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+                  ..++.||++..+.+. ..
T Consensus       211 T~G~vp~~G~~~~~~sld~~Gpmarsv~D~a~ll~viag~d~~d~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~-~~  289 (502)
T PRK07235        211 THGLVPYTGAFPIERTIDHLGPMTATVRDNALLLEVIAGRDGLDPRQPAQPPVDDYTAALDRGVKGLKIGILREGFG-LP  289 (502)
T ss_pred             CCcccCCCCCCCcccccCeeeceeCCHHHHHHHHHHHcCCCCCCccccccCCccchhHHhccCCcCCEEEEeccccC-CC
Confidence            99999999999999999999999999999999999987643221                  123346666554332 12


Q ss_pred             CChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhH-HH-HHH-HHHH------------HHHhh
Q 008025          245 IPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL-KN-VMR-LIQR------------YEFKN  307 (580)
Q Consensus       245 ~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~-~~-~~~-~~~~------------~~~~~  307 (580)
                      ..++++.++++++++.|+  |++|++ +++.        ........+..+ .+ ... .+..            .+...
T Consensus       290 ~~~~~v~~a~~~a~~~L~~~G~~V~~-v~~p--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  360 (502)
T PRK07235        290 NSEPEVDEAVRAAAKRLEDLGATVEE-VSIP--------LHRLALAIWNPIATEGATAQMMLGNGYGFNWKGLYDTGLLD  360 (502)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC--------chhhHHHHHHHHHHHHHHHHhhhccccccccccccchhHHH
Confidence            247899999999999986  776632 2222        111000000000 00 000 0000            01111


Q ss_pred             hhHHHHHhhCCCCCHHHHHHHHHhh----cCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchH
Q 008025          308 NHNEWIESVKPALDPDISAEIGEML----EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSE  383 (580)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~g~----~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~  383 (580)
                      .+..+...+...+++.++.++..|.    .++..+|.++++.|+.+++.++++|+++|+||+||+|.+||+++....+..
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~y~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~  440 (502)
T PRK07235        361 AFGAGWRERADDLSETVKLVMLLGQYGLERYHGRYYAKARNLARRLRAAYDEALRKYDLLVMPTTPMVATPLPAPDASRE  440 (502)
T ss_pred             HHhhhhhcchhhcCHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeeCCCCCCCCCcccccCchH
Confidence            1222233445678999999988775    467889999999999999999999999999999999999999976533333


Q ss_pred             HHHH---HHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHH
Q 008025          384 DYQN---RAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (580)
Q Consensus       384 ~~~~---~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~  440 (580)
                      .+..   .++.||.+||++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.
T Consensus       441 ~~~~~~~~~~~~t~~~Nl~G~PalsvP~g~~~GlPvGlQlvg~~~~D~~lL~~A~~~E~~  500 (502)
T PRK07235        441 EYVSRALEMIANTAPFDVTGHPAMSVPCGLVDGLPVGLMLVGRHFDEATILRAAAAFEAS  500 (502)
T ss_pred             HHHHHHHhhhccCccchhhCCCeEEEECCcCCCCCeEEEEeCCCCCHHHHHHHHHHHHhh
Confidence            3322   23448999999999999999999999999999999999999999999998864

>PRK07042 amidase; Provisional

Probab=100.00  E-value=3.4e-83  Score=670.28  Aligned_cols=413  Identities=17%  Similarity=0.140  Sum_probs=331.0

Q ss_pred             hhHHHHhhhhhhHHHH-----HHHH----hh--hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008025            7 NLWVLLGLGLAGILLM-----TKKL----KK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL   68 (580)
Q Consensus         7 ~~~~~~~~~l~~~~~~-----~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~   68 (580)
                      ++...++.+|+++++.     .|++    +|  +.||.+|||++...|.++++++       ++...|||+||||+|||+
T Consensus         3 ~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~   82 (464)
T PRK07042          3 ALHDLSAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARWAKGEPLGPLDGVPVTIKEN   82 (464)
T ss_pred             chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHHHcCCCCCCcCCCEEEEEcc
Confidence            4566788888888544     4442    33  7899999999988776555443       356789999999999999


Q ss_pred             cccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q 008025           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (580)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsa  148 (580)
                      |+|+|++||+||+.+.+  +++++|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||
T Consensus        83 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA  160 (464)
T PRK07042         83 IATRGVPVPLGTAATDL--PPAAADAPPAARLREAGAVILAKTTMPDYGMLSSGLSSFHGLTRNPWDLDQNPGGSSAGAG  160 (464)
T ss_pred             cccCCcccCCCChhhcC--CCCCcchHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCChHHHH
Confidence            99999999999999876  6889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008025          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--  226 (580)
Q Consensus       149 aaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~--  226 (580)
                      ||||+|++|+|+|||||||||||||||||||||||+||||..|..    +.|++|||+|+++|++.+++++.+.+..+  
T Consensus       161 aaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~----~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~  236 (464)
T PRK07042        161 AAAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY----TGRCAGPMTRTVDDAALLMSVLSRPDARDGT  236 (464)
T ss_pred             HHHHcCCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc----cccccCCccCCHHHHHHHHHHhcCCCCCCcc
Confidence            999999999999999999999999999999999999999998842    34899999999999999999987543211  


Q ss_pred             --------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhh
Q 008025          227 --------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN  290 (580)
Q Consensus       227 --------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~  290 (580)
                                    ..++.||++..+... ....++++.++++++++.|.  |++|++ ++        .+....+.   
T Consensus       237 ~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~~~~~~~~---  303 (464)
T PRK07042        237 SLPPQDIDWSDLDIDVRGLRIGLMLDAGC-GLAVDPEVRAAVEAAARRFEAAGAIVEP-VP--------PFLTRAML---  303 (464)
T ss_pred             ccCCCCcChhhhccCcCCCEEEEECcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eC--------CchhHHHH---
Confidence                          113456666544321 12357899999999999986  776632 11        11111111   


Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCC
Q 008025          291 GELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAY  370 (580)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~  370 (580)
                          ..+..+...+.+..+..+.......+.+.++.++..+..++..+|.++...|..+++.+.++|+++|+||+||+|.
T Consensus       304 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~D~ll~Pt~~~  379 (464)
T PRK07042        304 ----DGLDRFWRARLWSDLAALPPERRAKVLPYIRRWAEGGADLSGVEAVRGFNQTFAMRAAAARLFAEFDYVLSPVAPV  379 (464)
T ss_pred             ----HHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCCCC
Confidence                1111111123333344444555667889999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCc-hHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025          371 PPPKLGGKEML-SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (580)
Q Consensus       371 ~ap~~~~~~~~-~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~l~  442 (580)
                      +||+++..... ........+.||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+...
T Consensus       380 ~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~~~  453 (464)
T PRK07042        380 PAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQIVGPRFDDLGVLRLAKAFEGWRG  453 (464)
T ss_pred             CCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence            99998743211 101111223589999999999999999986 7999999999999999999999999987643

>PRK07486 amidase; Provisional

Probab=100.00  E-value=7e-83  Score=671.39  Aligned_cols=418  Identities=22%  Similarity=0.240  Sum_probs=329.9

Q ss_pred             chhHHHHhhhhhhHHHH-----HHHH----h--hhccCCccceeeccccC-CCCCC-------CCCCCCCCCCCceeeee
Q 008025            6 ANLWVLLGLGLAGILLM-----TKKL----K--KNIKQDFGAFIEKLQLL-PPPQP-------LPPKAPHPLTGLSFAVS   66 (580)
Q Consensus         6 ~~~~~~~~~~l~~~~~~-----~~~~----~--~~~~~~~~a~~~~~~~~-~~~~~-------~~~~~~gpl~Gvp~~vK   66 (580)
                      -++..+++.+|+.+++.     .|++    +  ++.||.+|||++...++ +++++       +.+...|||+||||+||
T Consensus         7 ~~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~~~g~~~gpL~GvPi~vK   86 (484)
T PRK07486          7 DPIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAALARGEYRGWLHGMPQAPK   86 (484)
T ss_pred             hhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHHhcCCCCCCcCCCeEEEe
Confidence            35566789999888554     4442    3  37899999999985532 22332       23566799999999999


Q ss_pred             cccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCch
Q 008025           67 DLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSG  146 (580)
Q Consensus        67 D~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgG  146 (580)
                      |+|+++|++||+||+.+++  +++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||
T Consensus        87 D~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgG  164 (484)
T PRK07486         87 DLAPTKGIRTTLGSPIFAD--QVPQEDAIVVERMRAAGAIFIGKTNTPEFGLGSHTYNPVYGATRNPYDPSRSAGGSSGG  164 (484)
T ss_pred             cccccCCcCcccccHhhCC--CCCCCcHHHHHHHHHCCCeeEEecCchHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHH
Confidence            9999999999999999987  78999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCc-ccCCCCCcccccccCHHHHHHHHHHhcCCCcc
Q 008025          147 AAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGII-PISTSLDTVGWFARDPKILRHVGHVLLQLPFA  225 (580)
Q Consensus       147 saaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~-p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~  225 (580)
                      ||||||+|++|+|+||||||||||||+||||||||||+||||+.|.+ |+++++|++|||+|+++|+..+++++.+.+..
T Consensus       165 sAaaVAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~d~~  244 (484)
T PRK07486        165 AAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTVEDVALLLAVQAGYDPR  244 (484)
T ss_pred             HHHHHHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccccccccCCeeCCHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999998754 78999999999999999999999998754321


Q ss_pred             c-----------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhh
Q 008025          226 A-----------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGF  286 (580)
Q Consensus       226 ~-----------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~  286 (580)
                      +                 ..++.||++..+.+. ....++++.++++++++.|.  |++|++ ..         +.+.. 
T Consensus       245 d~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~-  312 (484)
T PRK07486        245 DPLSLAEDPARFAQPLEADLRGKRIAWLGDWGG-YLPMEAGVLELCEAALATLRELGCDVEA-AL---------PAFPP-  312 (484)
T ss_pred             CCccccCCCcchhhHhccCCCCCEEEEeCcccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eC---------CCcch-
Confidence            1                 123456666544321 11247899999999999986  666532 11         11110 


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhhhHHHHH--hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEE
Q 008025          287 HKTNGELKNVMRLIQRYEFKNNHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILV  364 (580)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll  364 (580)
                      ..    ..+.+..+...+........+.  .....+++.++.++..+..++..+|.++.+.|..+++.+.++|+++|+||
T Consensus       313 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll  388 (484)
T PRK07486        313 ER----LWRAWLTLRHFLVGGSLLALYRDPARRALLKPEAIWEIEGGLALTAAQVYEASVIRSAWYQALLRLFERYDFLA  388 (484)
T ss_pred             HH----HHHHHHHHHHHHHHHhHHHHhccccchhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence            00    0111111111111111222221  13356889999999999999999999999999999999999999999999


Q ss_pred             EcCCCCCCCCCCCCC-----CchHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHH
Q 008025          365 TPTTAYPPPKLGGKE-----MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY  438 (580)
Q Consensus       365 ~Pt~~~~ap~~~~~~-----~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le  438 (580)
                      +||++.+||+++...     .........++.+|.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|
T Consensus       389 ~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~glPvGlQlvg~~~~D~~lL~~a~~le  468 (484)
T PRK07486        389 LPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAGLPMGMQIIGPPRADLAVLQLAHAYE  468 (484)
T ss_pred             cCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCCCceEEEEECCCCCHHHHHHHHHHHH
Confidence            999999999886421     00111122334478899999999999999985 799999999999999999999999998


Q ss_pred             HHH
Q 008025          439 ASL  441 (580)
Q Consensus       439 ~~l  441 (580)
                      +..
T Consensus       469 ~~~  471 (484)
T PRK07486        469 QAT  471 (484)
T ss_pred             hcc
Confidence            653

>PRK12470 amidase; Provisional

Probab=100.00  E-value=6.8e-83  Score=665.98  Aligned_cols=412  Identities=22%  Similarity=0.272  Sum_probs=325.8

Q ss_pred             hhHHHHhhhhhhHH-----HHHHHH----hh--hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008025            7 NLWVLLGLGLAGIL-----LMTKKL----KK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL   68 (580)
Q Consensus         7 ~~~~~~~~~l~~~~-----~~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~   68 (580)
                      ++..+++.+|++++     ++.|++    +|  +.||.+|||++...++++++++       .+... ||+||||+|||+
T Consensus         5 ~~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~g~~~-pL~GvPi~vKD~   83 (462)
T PRK12470          5 DLAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRLDAGERL-PLLGVPIAIKDD   83 (462)
T ss_pred             hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHHhcCCCC-CcCCCeEEEecC
Confidence            45667899999995     444543    33  7899999999988776555443       23445 999999999999


Q ss_pred             cccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q 008025           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (580)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsa  148 (580)
                      |+++|++||+||+.+ .  +++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||
T Consensus        84 ~~v~G~~tt~Gs~~~-~--~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA  160 (462)
T PRK12470         84 VDVAGEVTTYGSAGH-G--PAATSDAEVVRRLRAAGAVIIGKTNVPELMIMPFTESLAFGATRNPWDPNRTPGGSSGGSA  160 (462)
T ss_pred             cccCCceeCCCCccc-C--CCCCccHHHHHHHHHCCCeEEEEeChHhHhcCCCCCCCCCCCCCCCCCCCCCCCcchhHHH
Confidence            999999999999985 3  6889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008025          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--  226 (580)
Q Consensus       149 aaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~--  226 (580)
                      ||||+|++|+|+|||||||||||||||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+  
T Consensus       161 aAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~ld~~Gp~ar~v~D~a~~~~vl~~~~~~~~~  240 (462)
T PRK12470        161 AAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSVMDAALLLDATTTVPGPEGE  240 (462)
T ss_pred             HHHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCcccCccccCCeeCCHHHHHHHHHHhcCCCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887533211  


Q ss_pred             -------CCCCceEEEccchhh-hcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHH
Q 008025          227 -------QRSPRQIIIADDCFE-LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNV  296 (580)
Q Consensus       227 -------~~~~~~l~i~~~~~~-~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~  296 (580)
                             ...+.||++..+.+. .....++++.++++++++.|.  |++|++ ++         |.+......  .+...
T Consensus       241 ~~~~~~~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~~~~~--~~~~~  308 (462)
T PRK12470        241 FVAAAAREPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVVV-RD---------PDYPAATYA--NYLPR  308 (462)
T ss_pred             hhhhhccCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhCCCEEEE-eC---------CCchhHHHH--HHHHH
Confidence                   124456666544321 112347899999999999986  766532 11         111100000  00000


Q ss_pred             HHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCC
Q 008025          297 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG  376 (580)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~  376 (580)
                      +  .   ...... .........+++.++.++..|..++..+|.....++..+++.|.++|+++|+||+||+|.+||+++
T Consensus       309 ~--~---~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~p~~ap~~~  382 (462)
T PRK12470        309 F--F---RGISDD-ADAQAHPDRLEARTRAIARLGSFFSDRRMAALRAAEVVLSARIQSIFDDVDVVVTPGTATGPSRIG  382 (462)
T ss_pred             H--H---HHHHHh-hccccChhhcCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEeCCCCCCCCCCCC
Confidence            0  0   000000 111223456889999999999999998888555556699999999999999999999999999987


Q ss_pred             CCCCc--hHHH--HHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHH
Q 008025          377 GKEML--SEDY--QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (580)
Q Consensus       377 ~~~~~--~~~~--~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~  440 (580)
                      .....  .+.+  ...+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+.
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlqlvg~~~~D~~LL~~A~~le~~  451 (462)
T PRK12470        383 AYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLPMSVQLVGRPYDEATLLALAAQIESA  451 (462)
T ss_pred             ccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCceEEEEECCCCcHHHHHHHHHHHHcc
Confidence            54211  1111  12334589999999999999999986 79999999999999999999999999865

>PRK06170 amidase; Provisional

Probab=100.00  E-value=1.1e-82  Score=671.70  Aligned_cols=416  Identities=21%  Similarity=0.269  Sum_probs=329.5

Q ss_pred             chhHHHHhhhhhhHHHHH-----HHH----hh--hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeec
Q 008025            6 ANLWVLLGLGLAGILLMT-----KKL----KK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSD   67 (580)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~-----~~~----~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD   67 (580)
                      .++..+++.+|+++++.+     |++    +|  ++||.+|||++...++++++|+       .+ ..|||+||||+|||
T Consensus         7 ~~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~~g-~~gpL~GvPv~VKD   85 (490)
T PRK06170          7 DEWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAARARG-ERGPLLGIPVTVKE   85 (490)
T ss_pred             chhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHHhcC-CCCCcCCceEEEec
Confidence            467777899999995544     442    33  7899999999988776655442       23 46999999999999


Q ss_pred             ccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 008025           68 LFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGA  147 (580)
Q Consensus        68 ~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGs  147 (580)
                      +|+|+|++||+||+.+.+  +++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+||||||||
T Consensus        86 ~~~v~G~~tt~Gs~~~~~--~~~~~da~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGs  163 (490)
T PRK06170         86 SFNVAGLPTTWGFPDLRD--YVPAEDAVAVARLKAAGAVILGKTNVPLGLQDWQSYNEIYGTTNNPWDLARTPGGSSGGS  163 (490)
T ss_pred             ccccCCcccCCCChhhcC--CCCCccHHHHHHHHHCCCEEEEecCChhhccCCCccCCCCCCCCCCCCCCCCCCCChHHH
Confidence            999999999999999987  688999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcc-----c--CCCCCcccccccCHHHHHHHHHHhc
Q 008025          148 AVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIP-----I--STSLDTVGWFARDPKILRHVGHVLL  220 (580)
Q Consensus       148 aaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p-----~--~~sld~~G~~ar~~~d~~~v~~~l~  220 (580)
                      |||||+|++|+|+|||||||||||||||||||||||+||||+.|++|     +  +.++|++|||+|+++|++.+++++.
T Consensus       164 AaAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~~~~~d~~Gp~arsv~D~a~~l~~l~  243 (490)
T PRK06170        164 AAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSARDLALLLDVMA  243 (490)
T ss_pred             HHHHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCccccccccccccccccCccCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999988     4  3368999999999999999999987


Q ss_pred             CCCccc---------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCch
Q 008025          221 QLPFAA---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSL  283 (580)
Q Consensus       221 ~~~~~~---------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~  283 (580)
                      +.+..+               ..++.||++..+.+  ....++++.++++++++.|.  |++|++ ++.      ..|.+
T Consensus       244 g~d~~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~------~~~~~  314 (490)
T PRK06170        244 GPDPLDGGVAYRLALPPARHGRLKDFRVLVLDEHP--LLPTDAAVRAAIERLAAALADAGARVVR-HSP------LLPDL  314 (490)
T ss_pred             CCCccccccccccCCCcccccccCCCEEEEECCcC--CCCCCHHHHHHHHHHHHHHHHCCCEEEE-cCC------CCCch
Confidence            643221               11345676655433  12357899999999999986  776643 110      11222


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHhhhh-HHHHHh------hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhh
Q 008025          284 KGFHKTNGELKNVMRLIQRYEFKNNH-NEWIES------VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSL  356 (580)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~  356 (580)
                      ....       ..+..+...+....+ ..+...      ....+.+.++.++..+..++..+|.++.+.|..+++.|.++
T Consensus       315 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~  387 (490)
T PRK06170        315 AESA-------RLYMRLLFAASAARFPPDAYADAQARAAGLSADDRSLAAERLRGAVLSHRDWLFADAAREELRAAWRRF  387 (490)
T ss_pred             HHHH-------HHHHHHHHHHHhhccchhHHHHhhhccccccchhHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            2111       111111111111111 011111      12346677777788888899999999999999999999999


Q ss_pred             cCCCCEEEEcCCCCCCCCCCCCCCc------hH----HHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccC
Q 008025          357 LKDDGILVTPTTAYPPPKLGGKEML------SE----DYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHG  425 (580)
Q Consensus       357 ~~~~Dvll~Pt~~~~ap~~~~~~~~------~~----~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~  425 (580)
                      |+++|+||+||++.+||+++.....      .+    .+ ...+.||.++|++|+|+++||++.. +|+|+|+|++++++
T Consensus       388 ~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlig~~~  466 (490)
T PRK06170        388 FAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPY-WDQLVWAGLATLPGLPATAIPIGLSATGLPVGVQIVGPAL  466 (490)
T ss_pred             HhcCCEEEeCCCCCCCCCCCccccccccccccCCcccch-hhhhhhcceecccCCCeEEEECCcCCCCCceeEEEecCCC
Confidence            9999999999999999998753110      00    11 1223589999999999999999986 79999999999999


Q ss_pred             CChHHHHHHHHHHHHH
Q 008025          426 GDRFLLDTVQNMYASL  441 (580)
Q Consensus       426 ~d~~ll~la~~le~~l  441 (580)
                      +|..+++++..+|+.+
T Consensus       467 ~D~~LL~~a~~lE~~~  482 (490)
T PRK06170        467 EDRTPLRLAELLEEEF  482 (490)
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999998764

>PRK07488 indole acetimide hydrolase; Validated

Probab=100.00  E-value=2.8e-82  Score=664.80  Aligned_cols=413  Identities=25%  Similarity=0.343  Sum_probs=328.9

Q ss_pred             hhHHHHhhhhhhHHHHH-----HHH----hh--hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecc
Q 008025            7 NLWVLLGLGLAGILLMT-----KKL----KK--NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDL   68 (580)
Q Consensus         7 ~~~~~~~~~l~~~~~~~-----~~~----~~--~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~   68 (580)
                      ++..+++.+|+++++.+     |++    +|  +.| .+|||++...++++++++       .+...| |+||||+|||+
T Consensus         7 ~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~~~g~~~g-L~GvPi~vKD~   84 (472)
T PRK07488          7 DVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQRAAGAALL-LAGVPIVIKDN   84 (472)
T ss_pred             hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHHhcCCCCC-cCceEEEEEcc
Confidence            57788999999995544     443    33  445 699999988776554432       244456 99999999999


Q ss_pred             cccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q 008025           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (580)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsa  148 (580)
                      |+|+|++||+||+.+.+  +++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||
T Consensus        85 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsA  162 (472)
T PRK07488         85 INTAGMPTTAGTPALLG--FVPATDAPVVQRLLDAGAVPLGKANMHELAFGITSNNGAFGAVRNPYDPARIAGGSSGGTA  162 (472)
T ss_pred             cccCCCccCcCChhhcc--CCCCCCHHHHHHHHHCCCeeeeccChhHHhcCCCCCCCCCCCCCCCCCCCCCCCCCchHHH
Confidence            99999999999999987  6789999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008025          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--  226 (580)
Q Consensus       149 aaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~--  226 (580)
                      |+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+...  
T Consensus       163 aaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~~~d~~Gp~arsv~D~a~~~~vl~g~d~~~~~  242 (472)
T PRK07488        163 AAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSVADLALLDAVITGDAALPAP  242 (472)
T ss_pred             HHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccccCCcccCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987654322  


Q ss_pred             -CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHH
Q 008025          227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY  303 (580)
Q Consensus       227 -~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  303 (580)
                       +.++.||++..+.+  ....++++.++++++++.|.  |++|++ +++        |.+.++..      .....+...
T Consensus       243 ~~~~~lrig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~------~~~~~~~~~  305 (472)
T PRK07488        243 VALAGLRLGVPAAPF--WDGLDPDVAAVAEAALAKLAAAGVTFVE-LDL--------PGLHELNE------AVGFPIALY  305 (472)
T ss_pred             cCcCCCEEEEEcchh--ccCCCHHHHHHHHHHHHHHHHCCCEEEe-eCC--------cCHHHHhh------hHHHHHHHH
Confidence             23456777765432  22347899999999999986  777642 222        22211100      001112222


Q ss_pred             HHhhhhHHHHHhhCC----------CCCHHHHHHHHH---hhcCCHHHHHHHHHH-HHHHHHHHHhhcC--CCCEEEEcC
Q 008025          304 EFKNNHNEWIESVKP----------ALDPDISAEIGE---MLEISETVIENCKSI-RNEMRSAISSLLK--DDGILVTPT  367 (580)
Q Consensus       304 ~~~~~~~~~~~~~~~----------~~~~~~~~~~~~---g~~~s~~~~~~a~~~-r~~~~~~~~~~~~--~~Dvll~Pt  367 (580)
                      +....+..|+.....          ..++.++.+++.   +..++..+|.++++. |+.+++.+.++|+  ++|+||+||
T Consensus       306 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~D~ll~Pt  385 (472)
T PRK07488        306 EALADLRAYLRENGAGVSFEELVARIASPDVRAIFRDLLDPPQISEDAYRAALDVGRPRLQAWYRQAFARHGLDAILFPT  385 (472)
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHhhccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEeCC
Confidence            333334444332221          225777666543   346789999999888 9999999999998  789999999


Q ss_pred             CCCCCCCCCCCCC------chHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHH
Q 008025          368 TAYPPPKLGGKEM------LSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (580)
Q Consensus       368 ~~~~ap~~~~~~~------~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~  440 (580)
                      +|.++|+++....      ....+ ..+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+.
T Consensus       386 ~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlig~~~~d~~LL~~A~~lE~~  464 (472)
T PRK07488        386 TPLTAPPIGDDDTVILNGAAVPTF-ARVIRNTDPASNAGLPGLSLPAGLTPHGLPVGLELDGPAGSDRRLLAIGRALERV  464 (472)
T ss_pred             CCCCCccccccccccccccchhhh-hhhhcccccccccCCCeEEEecCCCCCCCCeeEEEeCCCCCHHHHHHHHHHHHHh
Confidence            9999999976411      11222 2344589999999999999999986 79999999999999999999999999875


Q ss_pred             H
Q 008025          441 L  441 (580)
Q Consensus       441 l  441 (580)
                      +
T Consensus       465 ~  465 (472)
T PRK07488        465 L  465 (472)
T ss_pred             h
Confidence            3

>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit

Probab=100.00  E-value=1e-82  Score=667.39  Aligned_cols=395  Identities=26%  Similarity=0.346  Sum_probs=311.3

Q ss_pred             hccCCccceeeccccCCCCCCCCCC--CCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCe
Q 008025           29 NIKQDFGAFIEKLQLLPPPQPLPPK--APHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGAT  106 (580)
Q Consensus        29 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai  106 (580)
                      +.||.+|||++...++++++++...  ..|||+||||+|||+|+|+|++||+||+.+++  +++.+|+++|+|||++|||
T Consensus        25 ~~~~~~na~~~~~~~~al~~A~~~d~~~~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~~L~~aGAi  102 (460)
T TIGR00132        25 ANKDKINAFLEVTVEKALKQAKKLDKAILTPLAGIPIAVKDNISTKGIVTTCASKILEN--YIPPYDATVIERLKQAGAL  102 (460)
T ss_pred             HhcccCCeEEEcCHHHHHHHHHHHHHhccCCcCCcEEEEecccccCCcccCcCChhhcc--CCCCCchHHHHHHHHCCCE
Confidence            7899999999988776555443211  12899999999999999999999999999987  6888999999999999999


Q ss_pred             EEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCc
Q 008025          107 CIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGA  186 (580)
Q Consensus       107 ~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~  186 (580)
                      ++||||||||+++.+|+|.+||+|+||||++|+||||||||||+||+|++|+|+|||||||||+||+||||||||||+||
T Consensus       103 i~GKTn~~E~a~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~G~  182 (460)
T TIGR00132       103 IIGKTNMDEFAMGSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAVAADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGR  182 (460)
T ss_pred             EEEEechhHHhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCCeEeecCCCCcchhhhHhcCceeECCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEccchhhhcCCChhH
Q 008025          187 VSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLKIPADR  249 (580)
Q Consensus       187 v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-----------------~~~~~~l~i~~~~~~~~~~~~~~  249 (580)
                      ||+.|++|+++++|++|||+|+++|++.+++++.+.+..+                 ..++.||++..+.+.   ..+++
T Consensus       183 vs~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~~~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~~---~~~~~  259 (460)
T TIGR00132       183 VSRYGLVAYASSLDQIGPFARTVEDIALLLDVISGHDKRDSTSAKVPDPEFFEELKKDLKGLKVGVVKEFSE---EMDKE  259 (460)
T ss_pred             CCCCCCcCcccCCCcccCeeCCHHHHHHHHHHHcCCCCCCCcccCCCccchhhhhhcccCCCEEEEECcccc---cCCHH
Confidence            9999999999999999999999999999999987643211                 123456666544332   24788


Q ss_pred             HHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhh--HHHHHHHHHHHH---------HhhhhHHHHHh-
Q 008025          250 VVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE--LKNVMRLIQRYE---------FKNNHNEWIES-  315 (580)
Q Consensus       250 ~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~-  315 (580)
                      +.++++++++.|.  |++|++ +++        |.+.........  ..+....+..+.         ...++.+++.. 
T Consensus       260 v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (460)
T TIGR00132       260 VQEKFENALEVLEELGAEIVE-VSF--------PHVKYALPIYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKT  330 (460)
T ss_pred             HHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHHHHHHHHHHHHHHHHHHhccccccccccccccccHHHHHhhc
Confidence            9999999999886  776633 222        222211110000  000110010000         00112233332 


Q ss_pred             hCCCCCHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCc-hHHHHHHH
Q 008025          316 VKPALDPDISAEIGEMLEIS-----ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML-SEDYQNRA  389 (580)
Q Consensus       316 ~~~~~~~~~~~~~~~g~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~-~~~~~~~~  389 (580)
                      ....+++.++.++..+...+     ..+|.++++.|..+++.+.++|+++|+||+||++.+||+++..... ...+.  .
T Consensus       331 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~--~  408 (460)
T TIGR00132       331 RAEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQKVRTLIIDDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYL--S  408 (460)
T ss_pred             chhhcCHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCchHhhhc--c
Confidence            23457788888887665444     3448899999999999999999999999999999999999754221 11121  1


Q ss_pred             hhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHH
Q 008025          390 FSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA  439 (580)
Q Consensus       390 ~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~  439 (580)
                      ..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+
T Consensus       409 ~~~t~~~nl~g~PaisvP~g~~~~GlPvGlqlig~~~~D~~lL~~A~~le~  459 (460)
T TIGR00132       409 DILTVPANLAGLPAISVPCGVKEKGLPIGLQIIGKCFDDKTLLQVSYAFEQ  459 (460)
T ss_pred             cceeccccccCCCcEEEecCcCCCCCCeeEEEECCCCchHHHHHHHHHHhh
Confidence            1279999999999999999987 8999999999999999999999998874

This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.

>PRK06061 amidase; Provisional

Probab=100.00  E-value=3.2e-82  Score=664.58  Aligned_cols=415  Identities=23%  Similarity=0.276  Sum_probs=327.3

Q ss_pred             CccchhHHHHhhhhhhHHHH-----HHHH----h--hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceee
Q 008025            3 SQSANLWVLLGLGLAGILLM-----TKKL----K--KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFA   64 (580)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~~-----~~~~----~--~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~   64 (580)
                      |-+-+.-.+++.+|+++++.     .|++    +  ++.||.+|||++...++++++++       ++. .+||+||||+
T Consensus        10 ~~~~~~~~~s~~~l~~~l~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~~pL~GvPv~   88 (483)
T PRK06061         10 SGSGNDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRRAAGD-RLPLLGVPIA   88 (483)
T ss_pred             cCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHHhcCC-CCCcCCCeEE
Confidence            33445566778888888554     4442    3  37899999999998876655443       122 3599999999


Q ss_pred             eecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 008025           65 VSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSS  144 (580)
Q Consensus        65 vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSS  144 (580)
                      |||+|+++|++||+||+..   ..++++||++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+|||||
T Consensus        89 vKD~~~v~G~~tt~Gs~~~---~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~~GGSS  165 (483)
T PRK06061         89 VKDDVDVAGVPTAFGTAGE---VPPATADSEVVRRLRAAGAVIVGKTNTCELGQWPFTSGPAFGHTRNPWSRDHTPGGSS  165 (483)
T ss_pred             EEcccccCCceecCCCccc---CCCCCCCHHHHHHHHHCCCEEEEecCcchhccCCCCCCCCCCCCCCCCCCCCCCCCCh
Confidence            9999999999999999842   1345799999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCc
Q 008025          145 SGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPF  224 (580)
Q Consensus       145 gGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~  224 (580)
                      ||||||||+|++|+|+||||||||||||+||||||||||+||||+.|+.|.+.++|++|||+|+++|++.+++++.+.+.
T Consensus       166 gGsAaAVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~  245 (483)
T PRK06061        166 GGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTVADAALLLDAASGNHP  245 (483)
T ss_pred             HHHHHHHHcCCCceEeecCCCCcchhchhhcCceeecCCCCccCCCCCCcccccCceeCCEeCCHHHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999888999999999999999999999875432


Q ss_pred             cc---------------CCCCceEEEccchhh--hcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhh
Q 008025          225 AA---------------QRSPRQIIIADDCFE--LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKG  285 (580)
Q Consensus       225 ~~---------------~~~~~~l~i~~~~~~--~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~  285 (580)
                      .+               ..++.||++..+...  .....++++.++++++++.|.  |++|++ .+         |.+..
T Consensus       246 ~d~~~~~~~~~~~~~~~~~~~lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~---------~~~~~  315 (483)
T PRK06061        246 GDRHRPPPVTVSDAVGRAPGPLRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALLGHTVVP-AD---------PDYGL  315 (483)
T ss_pred             CCCcccCCccchhhhccCCCCcEEEEECCccccccccCCCHHHHHHHHHHHHHHHHCCCEEEE-eC---------Cchhh
Confidence            11               113345665443211  112357899999999999986  676632 11         11110


Q ss_pred             hhhhhhhHHHHHHHHHHHHHhhhhHHHHHh--hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEE
Q 008025          286 FHKTNGELKNVMRLIQRYEFKNNHNEWIES--VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGIL  363 (580)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvl  363 (580)
                      ...    .. .   ..  .....+..+...  ....+++.++.++..+..++..+|.++++.|+.+++.+.++|+++|+|
T Consensus       316 ~~~----~~-~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~l  385 (483)
T PRK06061        316 RLG----LN-F---LP--RSTAGLRDWAERLGDPVLLDPRTVSNARMGRLLSQAILRLARAAEAAAQRRVGSIFDIVDVV  385 (483)
T ss_pred             HHH----HH-H---HH--HHHHHHHHHHhhccChhhCCHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence            000    00 0   00  000112222222  234678999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCCCCCCCCCch----HHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHH
Q 008025          364 VTPTTAYPPPKLGGKEMLS----EDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY  438 (580)
Q Consensus       364 l~Pt~~~~ap~~~~~~~~~----~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le  438 (580)
                      |+||+|.+||+++......    ......+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|
T Consensus       386 l~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~LL~~A~~le  465 (483)
T PRK06061        386 LAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDGLPIGAQLMGPANSEPLLISLAAQLE  465 (483)
T ss_pred             EcCCCCCCCCCcccccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCCCCeeeEEECCCCCHHHHHHHHHHHH
Confidence            9999999999997632110    00111233489999999999999999986 799999999999999999999999998


Q ss_pred             HHH
Q 008025          439 ASL  441 (580)
Q Consensus       439 ~~l  441 (580)
                      +..
T Consensus       466 ~~~  468 (483)
T PRK06061        466 AVS  468 (483)
T ss_pred             hhc
Confidence            764

>PRK06529 amidase; Provisional

Probab=100.00  E-value=7.3e-82  Score=663.32  Aligned_cols=412  Identities=17%  Similarity=0.224  Sum_probs=321.1

Q ss_pred             HHhhhhhhHHH-----HHHHH----hh--hccCCccceeeccccCCCCCCCCCC-CCCCCCCceeeeecc-cccCCcccC
Q 008025           11 LLGLGLAGILL-----MTKKL----KK--NIKQDFGAFIEKLQLLPPPQPLPPK-APHPLTGLSFAVSDL-FDIEGYVTG   77 (580)
Q Consensus        11 ~~~~~l~~~~~-----~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~gpl~Gvp~~vKD~-~~~~g~~tt   77 (580)
                      +++.+|+++++     +.|++    +|  +.||.+|||++...++++++++... ..+|||||||+|||+ ++|+|++||
T Consensus         4 ~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~~PL~GvPi~vKD~~~~v~G~~tt   83 (482)
T PRK06529          4 KDATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFSGKPFAGVPIFLKDLGQELKGQLST   83 (482)
T ss_pred             CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhccccCCCcCCCeEEEecCCcccCCCccC
Confidence            35677777744     44442    33  7899999999988776655544322 225999999999998 799999999


Q ss_pred             CCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCc
Q 008025           78 FGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVD  157 (580)
Q Consensus        78 ~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~  157 (580)
                      +||+.+++  +++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+|||||||||||||+|++|
T Consensus        84 ~Gs~~~~~--~~~~~Da~vV~rLr~AGAiilGKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~  161 (482)
T PRK06529         84 SGSRLFKN--YQATKTDLYVKRLEDLGFIILGRSNTPEFGFKNISDSSLHGPVNLPFDNSRNAGGSSGGAAALVSSGIVA  161 (482)
T ss_pred             cchHHhcC--CCCCcchHHHHHHHHCCCeEEEecCchHhhcCCCCCCcCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCc
Confidence            99999987  7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcc-cccccCHHHHHHHHHHhcCCCccc----------
Q 008025          158 FSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTV-GWFARDPKILRHVGHVLLQLPFAA----------  226 (580)
Q Consensus       158 ~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~-G~~ar~~~d~~~v~~~l~~~~~~~----------  226 (580)
                      +|+|||||||||+|||||||||||||+||||..+..+.+.+.|++ |||+|+++|++.+++++.+.+..+          
T Consensus       162 ~aiGtDtgGSIRiPAa~cGvvGlKPT~Grvp~~~~~~~~~~~~~~~Gpiarsv~D~a~~l~~~~g~~~~~~~~~~~~~~~  241 (482)
T PRK06529        162 LAAASDGGGSIRIPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSVRDTRRLLYYLQMYQMESPFPLATLSKE  241 (482)
T ss_pred             eeeecCCCCCeecChHhhCceeEccCCCccCCCCCCccccccccccCCccCcHHHHHHHHHHhhCCCCCCCcccCCcccc
Confidence            999999999999999999999999999999987665556666666 799999999999999876532111          


Q ss_pred             ----C-CCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCC-chhhhhhhhhhHHHHHH
Q 008025          227 ----Q-RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVP-SLKGFHKTNGELKNVMR  298 (580)
Q Consensus       227 ----~-~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p-~~~~~~~~~~~~~~~~~  298 (580)
                          . ..+.||++..+.+. ....++++.++++++++.|.  |++|++. +       ..| .+...       ...+.
T Consensus       242 ~~~~~~~~~lrIg~~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~ev-~-------~~p~~~~~~-------~~~~~  305 (482)
T PRK06529        242 SLFQSLQRPLKIAFYQRSPD-GSPVSLDAAKALKQAVTFLREQGHEVVEL-E-------EFPLDMTEV-------MRSYY  305 (482)
T ss_pred             hhccccCCCCEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHhCCCEEEEc-C-------CCCCCHHHH-------HHHHH
Confidence                0 13446666544321 12357899999999999986  7766431 1       012 11111       11111


Q ss_pred             HHHHHHHhhhhHHHHHhh-----CCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCC
Q 008025          299 LIQRYEFKNNHNEWIESV-----KPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPP  373 (580)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap  373 (580)
                      .+...+....+..+.+..     ...+++.++.++..|..++..+|.++.+.|..+++.|.++|+++|+||+||++.+||
T Consensus       306 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~a~  385 (482)
T PRK06529        306 IMNSVETAAMFDDIEDALGRPMTKDDMETMTWAIYQSGQDIPAKRYSQVLQKWDTYSATMASFHETYDLLLTFTTNTPAP  385 (482)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCChhhcCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEcCCCCCCCC
Confidence            222223322233222111     224677787778888889999999999999999999999999999999999999999


Q ss_pred             CCCCCCCch----------------------HHH--HHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCCh
Q 008025          374 KLGGKEMLS----------------------EDY--QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDR  428 (580)
Q Consensus       374 ~~~~~~~~~----------------------~~~--~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~  428 (580)
                      +++......                      ..+  ...+..||.++|++|+|+++||++.. +|+|+|+|+++++++|.
T Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~  465 (482)
T PRK06529        386 KHGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTALANLTGQPAISLPTYETKEGLPMGVQLIAAKGRED  465 (482)
T ss_pred             CCCccCcccchhhhccccccccchhhhhhhhhhhhhhhhcccccccccccCCCeEEeecCcCCCCCceeEEEecCCCcHH
Confidence            987532110                      011  11234589999999999999999986 79999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 008025          429 FLLDTVQNMYAS  440 (580)
Q Consensus       429 ~ll~la~~le~~  440 (580)
                      .+++++..+|+.
T Consensus       466 ~lL~~a~~le~~  477 (482)
T PRK06529        466 LLLGIAEQFEAA  477 (482)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998854

>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed

Probab=100.00  E-value=3.6e-82  Score=663.17  Aligned_cols=394  Identities=24%  Similarity=0.342  Sum_probs=310.5

Q ss_pred             hccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHH
Q 008025           29 NIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLV  101 (580)
Q Consensus        29 ~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~  101 (580)
                      +.||.+|||++...++++++++       .+. .|||+||||+|||+|+|+|++||+||+.+.+  ++|.+|+++|+|||
T Consensus        21 ~~~~~lna~~~~~~~~al~~A~~~d~~~~~g~-~gpL~GvPv~vKD~~~v~G~~tt~Gs~~~~~--~~~~~da~vV~~Lr   97 (459)
T PRK00012         21 EVDPKLNAFITVTEEEALAQAKAADAKLAAGE-AGPLAGIPIAIKDNICTKGIRTTCASKILEN--YVPPYDATVVEKLK   97 (459)
T ss_pred             HhcccCCeEEEeCHHHHHHHHHHHHHHHhcCC-CCccCCeEEEEecccccCCCccCccCHhhcc--CCCCcchHHHHHHH
Confidence            7899999999988776555443       234 7999999999999999999999999999987  78899999999999


Q ss_pred             hCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccc
Q 008025          102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFR  181 (580)
Q Consensus       102 ~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~Glk  181 (580)
                      ++|||++||||||||+++.+|+|.+||+|+||||++|+|||||||||||||+|++|+|+||||||||||||+||||||||
T Consensus        98 ~aGAiilGkTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGvvG~K  177 (459)
T PRK00012         98 AAGAVILGKTNMDEFAMGSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGLAPAALGSDTGGSIRQPAAFCGVVGLK  177 (459)
T ss_pred             HCCCEEEeeccchhhhcCCCCCCCCCCCcCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeeCCCCccchhHHHcCceeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc-----------------CCCCceEEEccchhhhcC
Q 008025          182 PSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-----------------QRSPRQIIIADDCFELLK  244 (580)
Q Consensus       182 Pt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-----------------~~~~~~l~i~~~~~~~~~  244 (580)
                      ||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+                 ..++.||++..+.+  ..
T Consensus       178 PT~G~vp~~G~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~~~~~~~lrig~~~~~~--~~  255 (459)
T PRK00012        178 PTYGRVSRYGLIAFASSLDQIGPFARTVEDAALLLNAIAGHDPKDSTSADVPVPDYTAALGKDIKGLKIGVPKEYF--GE  255 (459)
T ss_pred             CCCCcccCCCCcCcccCCCcccCccCCHHHHHHHHHHHhCCCCCCcccccCCCCchhhhhcccccccEEEEEcccc--cc
Confidence            999999999999999999999999999999999999987543211                 12344666655432  12


Q ss_pred             CChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhH--HHHHHHHHHHH---------HhhhhHH
Q 008025          245 IPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL--KNVMRLIQRYE---------FKNNHNE  311 (580)
Q Consensus       245 ~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~---------~~~~~~~  311 (580)
                      ..++++.++++++++.|.  |++|++ +++        |.+......+..+  .+....+..+.         ....+..
T Consensus       256 ~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (459)
T PRK00012        256 GLDPEVKEAVEAAIKKLEDLGAEIVE-VSL--------PHTKYALPAYYIIAPAEASSNLARYDGVRYGYRAEDAKDLEE  326 (459)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHHHHHHHHHHHHHHHHHhhcccccccccccccccHHH
Confidence            347899999999999886  776642 222        2221111000000  00000010000         0011222


Q ss_pred             HHHh-hCCCCCHHHHHHHHHhhcCC-----HHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCc-hHH
Q 008025          312 WIES-VKPALDPDISAEIGEMLEIS-----ETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML-SED  384 (580)
Q Consensus       312 ~~~~-~~~~~~~~~~~~~~~g~~~s-----~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~-~~~  384 (580)
                      ++.. ....+++.++.++..+..++     ..+|.++.+.|..+++.+.++|+++|+||+||++.+||+++..... ...
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~  406 (459)
T PRK00012        327 MYEKTRSEGFGEEVKRRIMLGTYVLSAGYYDAYYLKAQKVRTLIKQDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLAM  406 (459)
T ss_pred             HHhhhhhhccCHHHHHHHHhCcchhccccchHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCcccccccCchHhh
Confidence            2222 22357888888887665433     3458889999999999999999999999999999999999764211 112


Q ss_pred             HHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHH
Q 008025          385 YQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY  438 (580)
Q Consensus       385 ~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le  438 (580)
                      +.  .+.||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|
T Consensus       407 ~~--~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlvg~~~~D~~LL~~a~~~E  459 (459)
T PRK00012        407 YL--SDIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFDEETLLNVAYAFE  459 (459)
T ss_pred             hc--cccccccccccCCCcEEEecCCCCCCCCEEEEEECCCCchHHHHHHHHHhC
Confidence            21  12389999999999999999986 689999999999999999999998764

>PRK07869 amidase; Provisional

Probab=100.00  E-value=7.9e-82  Score=661.44  Aligned_cols=415  Identities=18%  Similarity=0.242  Sum_probs=316.9

Q ss_pred             chhHHHHhhhhhhHHHHH-----HHH----hh--hccCCccceeeccccCCCCCCCC-CCCCCCCCCceeeeecccccCC
Q 008025            6 ANLWVLLGLGLAGILLMT-----KKL----KK--NIKQDFGAFIEKLQLLPPPQPLP-PKAPHPLTGLSFAVSDLFDIEG   73 (580)
Q Consensus         6 ~~~~~~~~~~l~~~~~~~-----~~~----~~--~~~~~~~a~~~~~~~~~~~~~~~-~~~~gpl~Gvp~~vKD~~~~~g   73 (580)
                      .|+..+|+.+|+.+++.+     |++    +|  +.||.+|||++...+++++++++ ....|||+||||+|||+|+++|
T Consensus        10 ~~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~~~gpL~GvPi~vKD~~~v~G   89 (468)
T PRK07869         10 DALGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGSQGGFFSGVPTFIKDNVDVAG   89 (468)
T ss_pred             hhhhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCCCCCCcCCCeEEEecCcccCC
Confidence            356677899999985544     442    33  78999999999887766555443 2456999999999999999999


Q ss_pred             cccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhc
Q 008025           74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA  153 (580)
Q Consensus        74 ~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaa  153 (580)
                      ++||+||+.+.+  +++.+||++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+|||||||||||||+
T Consensus        90 ~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~d~~~~pGGSSgGsAaAVAa  167 (468)
T PRK07869         90 LPTMHGSDAWTP--RPAKADSDFARQFLATGLISLGKTQLPEFGFSASTEHPRLGPVRNPWNTDYSAGASSGGSAALVAA  167 (468)
T ss_pred             cccCcccHhhcC--CCCCCcHHHHHHHHHCCCEEEEecCchHhhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHc
Confidence            999999999986  788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCCCCcccccccccCccccccCCCccccCCCccc-CCCCCcccccccCHHHHHHHHHHhcCCCccc------
Q 008025          154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPI-STSLDTVGWFARDPKILRHVGHVLLQLPFAA------  226 (580)
Q Consensus       154 g~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~-~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~------  226 (580)
                      |++|+|+|||||||||||||||||||||||+||+|+.|+.|. ..++|++|||+|+++|++.+++++.+.+...      
T Consensus       168 G~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~~d~~Gp~arsv~D~a~l~~v~~g~~~~~~~~~~~  247 (468)
T PRK07869        168 GVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTVRDTAAFYREAERYYRNPKLPPIG  247 (468)
T ss_pred             CCCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCccccceecCeeCcHHHHHHHHHHHhccCccCCCCchh
Confidence            999999999999999999999999999999999999998774 3468999999999999999999876532110      


Q ss_pred             -----CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHH
Q 008025          227 -----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRL  299 (580)
Q Consensus       227 -----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~  299 (580)
                           ...+.||++..+.+. ....++++.++++++++.|.  |++|++ +++        |....+...   +. ....
T Consensus       248 ~~~~~~~~~lrigv~~~~~~-~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~~~~~---~~-~~~~  313 (468)
T PRK07869        248 DVTGPGKQRLRIAVVTDSVT-GREADPEVREAVLATARLLEELGHRVEP-VDL--------PVPASFVDD---FL-LYWG  313 (468)
T ss_pred             hhcccCCCCCEEEEECCccC-CCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHHHH---HH-HHHH
Confidence                 123456666544321 02357899999999999986  666532 121        211111110   00 0000


Q ss_pred             HHHHHHhhhhHHHHHhhCCCCC-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCC
Q 008025          300 IQRYEFKNNHNEWIESVKPALD-----PDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPK  374 (580)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~  374 (580)
                      +............   ....++     +........+.. +..+|.++++.|+.+++.+.++|+++|+||+||+|.+||+
T Consensus       314 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~Dvll~Pt~~~~ap~  389 (468)
T PRK07869        314 FLAFALVRGGRRT---FGPSFDRTRLDNLTLGLARHARR-NLHRLPLAIARLRRLRRVYARFFGTYDVVLTPTLAHTTPE  389 (468)
T ss_pred             HHHHHHHhhhhhh---cccccCHHHhhHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCCCCC
Confidence            0001110100000   111222     223333233333 4556888999999999999999999999999999999999


Q ss_pred             CCCCCCc--hHHH---HHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHH
Q 008025          375 LGGKEML--SEDY---QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (580)
Q Consensus       375 ~~~~~~~--~~~~---~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~  440 (580)
                      ++.....  ....   ...+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+|+.
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQivg~~~~D~~lL~~A~~le~~  461 (468)
T PRK07869        390 IGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLPVGMMFSADVGDEATLLELAYELEEA  461 (468)
T ss_pred             CCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCCeeEEEecCCCchHHHHHHHHHHHhc
Confidence            9753221  1111   11333589999999999999999986 89999999999999999999999998864

>PRK08137 amidase; Provisional

Probab=100.00  E-value=5e-81  Score=659.44  Aligned_cols=405  Identities=23%  Similarity=0.259  Sum_probs=318.4

Q ss_pred             hHHHHhhhhhhHHH-----HHHHH----hh--h---ccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeee
Q 008025            8 LWVLLGLGLAGILL-----MTKKL----KK--N---IKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVS   66 (580)
Q Consensus         8 ~~~~~~~~l~~~~~-----~~~~~----~~--~---~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vK   66 (580)
                      ...+|+.+|++++.     +.|++    +|  +   .||.+|||++...+ ++++++       .+...|||+||||+||
T Consensus         3 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPi~vK   81 (497)
T PRK08137          3 ALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPD-AEADAAALDAERKAGKVRGPLHGIPVLLK   81 (497)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHH-HHHHHHHHHHHHhcCCCCCCcCCceeeee
Confidence            44568888888854     44442    22  3   38999999998654 433332       3566799999999999


Q ss_pred             cccccC-CcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEecccccccccc-----CCCCCCCCCCCCCCCCCCCC
Q 008025           67 DLFDIE-GYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSI-----NGTNKHYDTPTNPAAPSQMP  140 (580)
Q Consensus        67 D~~~~~-g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~-----~~~~~~~G~~~NP~~~~~~~  140 (580)
                      |+|+|+ |++||+||+.+++  +++.+|+++|+|||+||||++||||||||+++.     +++|.+||+|+||||++|+|
T Consensus        82 D~~~v~~G~~tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~~  159 (497)
T PRK08137         82 DNIDAADPMPTTAGSLALAG--NRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRSP  159 (497)
T ss_pred             cceeecCCCCcCcCcHhhcC--CCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            999999 9999999999987  788999999999999999999999999999644     45899999999999999999


Q ss_pred             CCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhc
Q 008025          141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL  220 (580)
Q Consensus       141 GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~  220 (580)
                      ||||||||||||+|++|+|+||||||||||||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.
T Consensus       160 GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv~D~a~~l~vl~  239 (497)
T PRK08137        160 CGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTVADAAAVLTAIA  239 (497)
T ss_pred             CcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCccc--------------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccc
Q 008025          221 QLPFAA--------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS  278 (580)
Q Consensus       221 ~~~~~~--------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~  278 (580)
                      +.+..+                    ..++.||++..+.+    ..++++.++++++++.|.  |++|++ +++      
T Consensus       240 g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~----~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~------  308 (497)
T PRK08137        240 GGDPADPATASAPAPAVDYVAALDADALRGARLGVARNYL----GYHPEVDAQFERALAELKAAGAVVID-VVD------  308 (497)
T ss_pred             CCCCCCcccccCCCCccchhhhccccccCCCEEEEEchhc----cCCHHHHHHHHHHHHHHHHCCCEEEe-ccC------
Confidence            542111                    12345666654432    257899999999999986  776643 222      


Q ss_pred             cCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHh-----------------------hCCCCCHHHHHHHHHhhcCC
Q 008025          279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES-----------------------VKPALDPDISAEIGEMLEIS  335 (580)
Q Consensus       279 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~s  335 (580)
                        |.+..+..       .+..+...|....+..++..                       ....+++.++.++..+..++
T Consensus       309 --~~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (497)
T PRK08137        309 --LDDGDWGE-------AEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHAREMPYFGQELFEQAQAAPGLD  379 (497)
T ss_pred             --CchhhHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccchhhhcccCHHHHHHHHccCCCC
Confidence              21111110       11111111222222221111                       12457788888888888899


Q ss_pred             HHHHHHHHHHHHHH--HHHHHhhcC--CCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC
Q 008025          336 ETVIENCKSIRNEM--RSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY  411 (580)
Q Consensus       336 ~~~~~~a~~~r~~~--~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~  411 (580)
                      ..+|.++++.+..+  ++.|.++|+  ++|+||+||++ ++|+++....  ..+.   ..+|.++|++|+|+++||++..
T Consensus       380 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~--~~~~---~~~t~~~nl~G~PaisvP~g~~  453 (497)
T PRK08137        380 DPAYLDALADAKRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLING--DSFG---GSSSTPAAVAGYPHLTVPMGQV  453 (497)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccc--cccc---cccccccHhhCCCeEEEeCCCC
Confidence            99999998755555  479999997  78999999999 8888865311  1111   1368899999999999999998


Q ss_pred             CCCCcccceecccCCChHHHHHHHHHHHHH
Q 008025          412 DKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (580)
Q Consensus       412 ~~lp~g~q~~~~~~~d~~ll~la~~le~~l  441 (580)
                      +|+|+|+|+++++++|..+++++..+|+..
T Consensus       454 ~GlPvGvQlig~~~~d~~LL~~a~~lE~~~  483 (497)
T PRK08137        454 QGLPVGLSFIGAAWSEARLLELGYAYEQAT  483 (497)
T ss_pred             CCcCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999998663

>PRK08186 allophanate hydrolase; Provisional

Probab=100.00  E-value=5.3e-81  Score=664.37  Aligned_cols=411  Identities=26%  Similarity=0.317  Sum_probs=327.3

Q ss_pred             HhhhhhhHHH-----HHHHH----hh-hccCCccceeeccc-cCCCCCCCC----CCCCCCCCCceeeeecccccCCccc
Q 008025           12 LGLGLAGILL-----MTKKL----KK-NIKQDFGAFIEKLQ-LLPPPQPLP----PKAPHPLTGLSFAVSDLFDIEGYVT   76 (580)
Q Consensus        12 ~~~~l~~~~~-----~~~~~----~~-~~~~~~~a~~~~~~-~~~~~~~~~----~~~~gpl~Gvp~~vKD~~~~~g~~t   76 (580)
                      ++.+|+.+++     +.|++    +| +.++.+|+|++... ++++++++.    ....+||+||||+|||||+|+|++|
T Consensus         8 t~~~l~~~~~~g~~t~~evv~a~l~ri~~~~~~~a~i~~~~~~~a~~~A~~ld~~~~~~gPL~GVP~aVKDnidvaG~pT   87 (600)
T PRK08186          8 TLASLRAAYRAGTLTPRAVVAALYARIAAVDDPEVWIHLRPEADLLAQAAALEARDPAALPLYGVPFAVKDNIDVAGLPT   87 (600)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCCEEEEeCchHHHHHHHHHHhhhccccCCCCCCeEEeecceecCCccc
Confidence            5667777744     44443    33 22789999998765 333333221    1247899999999999999999999


Q ss_pred             CCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCC
Q 008025           77 GFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLV  156 (580)
Q Consensus        77 t~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~  156 (580)
                      |+||+.+.   ++|.+|+++|+||++||||++||||||||+++.++.|++||+|+||||++|+|||||||||++||+|++
T Consensus        88 TaGs~~~~---~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~g~~g~n~~yG~t~NP~~~~~~~GGSSsGSAaAVAaG~~  164 (600)
T PRK08186         88 TAACPAFA---YTPERDATVVARLRAAGAIVIGKTNLDQFATGLVGTRSPYGAVRNAFDPEYVSGGSSSGSAVAVALGLV  164 (600)
T ss_pred             CcCCHhHc---CCCCcChHHHHHHHHCCCEEEeeecchhhhcCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCc
Confidence            99999985   478999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc----------
Q 008025          157 DFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA----------  226 (580)
Q Consensus       157 ~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~----------  226 (580)
                      |||+||||||||||||+||||||||||+||+|+.|++|.++++|++|||+|+++|+..+++++.+.+..+          
T Consensus       165 ~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vGp~Arsv~D~~~~l~vl~g~d~~D~~s~~~p~~~  244 (600)
T PRK08186        165 SFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTVDDADAVLAVMAGFDPADPYSRANPADA  244 (600)
T ss_pred             ceEeeecCCCcchhhhHHhCceEEeCCCCcccCCCcccccccCCceecccCCHHHHHHHHHHhcCCCCCCcccccCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999887543211          


Q ss_pred             ---CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHH
Q 008025          227 ---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQ  301 (580)
Q Consensus       227 ---~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  301 (580)
                         ..++.||++..+.... ...++++.++++++++.|.  |++|++ ++        .|.+.+.      ....+....
T Consensus       245 ~~~~~~~lrIgv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~~v~e-i~--------~~~~~~~------~~~~~~~~~  308 (600)
T PRK08186        245 PAALPAGPRVGVPRAAQLE-FFGDAEAEAAFAAALARLEALGAELVE-ID--------FSPFLEA------ARLLYEGPW  308 (600)
T ss_pred             ccccCCCCEEEEEcchhcc-ccCCHHHHHHHHHHHHHHHHcCCeEEE-ec--------chhHHHH------HHHHHHHHH
Confidence               1123466665321111 1136789999999999986  776632 22        2222111      011111222


Q ss_pred             HHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCc
Q 008025          302 RYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML  381 (580)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~  381 (580)
                      ..+.+..+..++......+.+.++.++..+..++..+|.+++..|+.+++.+.++|+++|+||+||+|.+++ +++...+
T Consensus       309 ~ae~~~~~~~~~~~~~~~~~p~~~~~i~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~~D~Ll~Pt~p~~~~-~~~~~~~  387 (600)
T PRK08186        309 VAERYAAVGEFLEAHPDAVDPVVRGIIAGAAAFSAADAFRALYRLAELRRAAEAVLAGIDALLVPTAPTHPT-IAEVAAD  387 (600)
T ss_pred             HHHHHHHHHHHHhhChhhcCHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCCC-chhhcCC
Confidence            234444556666666678999999999999999999999999999999999999999999999999999875 4332222


Q ss_pred             hHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025          382 SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (580)
Q Consensus       382 ~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~~l~  442 (580)
                      ....+..+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..+++...
T Consensus       388 ~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~~  449 (600)
T PRK08186        388 PIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIAPAFADQALADLAARLQAALA  449 (600)
T ss_pred             chhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEcCCCCHHHHHHHHHHHHhhcc
Confidence            222223334589999999999999999975 8999999999999999999999999987643

>PRK07139 amidase; Provisional

Probab=100.00  E-value=9.2e-80  Score=637.50  Aligned_cols=393  Identities=23%  Similarity=0.308  Sum_probs=306.7

Q ss_pred             HhhhccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCC
Q 008025           26 LKKNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGA  105 (580)
Q Consensus        26 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGa  105 (580)
                      +++.-|..+|++.+...+..       ...|||+||||+|||+|+++|++||+||+.+.+  ++|.+|+++|+|||+|||
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~-------~~~gpL~GvPvavKD~~~v~G~~tt~Gs~~l~~--~~~~~dA~vV~rLr~AGA   82 (439)
T PRK07139         12 LEELKNDKNNAVSYVFDEKN-------NKDGPLANCVFTIKDNFATSEGPTHASSKSLEN--FKPSYNATVVQKLINAGA   82 (439)
T ss_pred             HHHhhccccCeEEEEecccC-------CCCCCcCCcEEEEEcceecCCCccCcChHHHcc--CCCCCchHHHHHHHHCCC
Confidence            44455677788877644432       247999999999999999999999999999886  678999999999999999


Q ss_pred             eEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCC
Q 008025          106 TCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYG  185 (580)
Q Consensus       106 i~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G  185 (580)
                      |++||||||||+++.+|.|.+||+|+||||++|+||||||||||+||+| +|+|+|||||||||+|||||||||||||+|
T Consensus        83 IilGKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAag-~~~alGtDtgGSIRiPAa~cGvvGlKPT~G  161 (439)
T PRK07139         83 KPVAKVHCDELGLGGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGDSVRLPASFIGKVGFKPSYG  161 (439)
T ss_pred             EEEEeechhhHhcCCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHCC-CCEEEEcCCCcchhhhHHHcCeEEEeCCCC
Confidence            9999999999999999999999999999999999999999999999997 799999999999999999999999999999


Q ss_pred             ccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc------------CCCCceEEEccchhhhcCCChhHHHHH
Q 008025          186 AVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA------------QRSPRQIIIADDCFELLKIPADRVVQV  253 (580)
Q Consensus       186 ~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~------------~~~~~~l~i~~~~~~~~~~~~~~~~~~  253 (580)
                      |||+.|++|+++++|++|||+|+++|++.+++++.+.+..+            ...+.||++... +   ...++++.++
T Consensus       162 ~vs~~G~~p~~~sld~~Gp~arsv~D~a~~~~vl~g~d~~d~~~~~~~~~~~~~~~~lrig~~~~-~---~~~~~~v~~a  237 (439)
T PRK07139        162 AISRYGLFAYASSLDTVAYFTHNVNDAIILSKVLFGKDENDLTSVDVKINNVKKTKPKKVAYLDC-F---KELEEYVAKK  237 (439)
T ss_pred             CcCCCCcccCcccCCccccccCCHHHHHHHHHHHcCCCcCCccccccCcccccccCCCEEEEECc-c---ccCCHHHHHH
Confidence            99999999999999999999999999999999987654222            124456666422 1   2247889999


Q ss_pred             HHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhh--HHHHHHHHHHH---H-----HhhhhHHHHH-hhCCCC
Q 008025          254 VIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGE--LKNVMRLIQRY---E-----FKNNHNEWIE-SVKPAL  320 (580)
Q Consensus       254 ~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~---~-----~~~~~~~~~~-~~~~~~  320 (580)
                      ++++++.|.  |++|++ +++...      .+......+..  ..+....+..+   .     ....+..++. .....+
T Consensus       238 ~~~a~~~L~~~G~~v~~-~~~~~~------~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (439)
T PRK07139        238 YKKLINILKSENIEVEK-IKIDEK------LLKAIKPVYKIISYSEASSNLANLNGIAFGNREKGSSWEEIMINTRSEGF  310 (439)
T ss_pred             HHHHHHHHHHCCCEEEE-eCCChh------HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccHHHHHHhcchhcc
Confidence            999999886  676632 222110      00100000000  00000000000   0     0001222322 233458


Q ss_pred             CHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhc
Q 008025          321 DPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI  395 (580)
Q Consensus       321 ~~~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~  395 (580)
                      ++.++.++..+..++.     .+|.++++.|+++++.|.++|+++|+||+||+|.+||+++........+. .+  +|.+
T Consensus       311 ~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~-~~--~t~~  387 (439)
T PRK07139        311 GKMVQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYM-DY--ILTI  387 (439)
T ss_pred             CHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhh-hh--cccC
Confidence            8999999988876654     34899999999999999999999999999999999999875321111221 11  4788


Q ss_pred             ccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025          396 ASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (580)
Q Consensus       396 ~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~l~  442 (580)
                      +|++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.++
T Consensus       388 ~nl~G~PaisvP~g~~~glPiGlqivg~~~~D~~LL~~A~~lE~~~~  434 (439)
T PRK07139        388 SNLVGNPSLSIPLGKYNNLPFNLAIDSKIYDDEKLLSYSLYIEELIK  434 (439)
T ss_pred             cccCCCCeEEEeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence            99999999999999668999999999999999999999999997764

>TIGR02713 allophanate_hyd allophanate hydrolase

Probab=100.00  E-value=8.6e-80  Score=648.00  Aligned_cols=367  Identities=28%  Similarity=0.351  Sum_probs=302.9

Q ss_pred             CCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCC
Q 008025           55 PHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPA  134 (580)
Q Consensus        55 ~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~  134 (580)
                      .+||+||||+|||||+++|++||+||+.+.   ++|.+||++|+|||+||||++||||||||+++.++.|++||+|+|||
T Consensus        29 ~~PL~GvP~aVKD~idvaG~pTTaGs~~~~---~~p~~DA~vV~rLr~AGAIiiGKTN~~Efa~g~~g~n~~~G~t~NP~  105 (561)
T TIGR02713        29 RLPLYGVPFAVKDNIDVAGLPTTAACPAFA---YTPEEDATVVALLRAAGAIVVGKTNLDQFATGLVGTRSPYGAVRNAF  105 (561)
T ss_pred             CCCccCCeEEEEcccccCCCccCcCCHhHc---CCCCcCHHHHHHHHHCCCEEEEEeCchHhhcCCCCCCCCCCCCCCCC
Confidence            589999999999999999999999999985   57889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHH
Q 008025          135 APSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRH  214 (580)
Q Consensus       135 ~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~  214 (580)
                      |++|+|||||||||+|||+|++++|+||||||||||||+||||||||||+||+|+.|++|++.++|++|||+|+++|+..
T Consensus       106 d~~~~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vG~~Arsv~D~~~  185 (561)
T TIGR02713       106 DPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGLKPTKGLVSTTGVVPACRSLDCVSIFALTVADAEQ  185 (561)
T ss_pred             CCCCCCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeEecCCCCccCCCccccccCCCeeechhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcccC-------------CCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCccccccccccccccc
Q 008025          215 VGHVLLQLPFAAQ-------------RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSK  279 (580)
Q Consensus       215 v~~~l~~~~~~~~-------------~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~  279 (580)
                      +++++.+.+..+.             ..+.||+|..+..... ..++++.++++++++.|.  |++|++ +++       
T Consensus       186 ~l~v~~g~d~~d~~s~~~p~~~~~~~~~~lrigv~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-v~~-------  256 (561)
T TIGR02713       186 VLRIAAAPDARDPYSRPLPAAALRRLPPPPRVGVPRAAQLEF-FGDSQAEAAFAAAVERLEALGVEVVE-IDF-------  256 (561)
T ss_pred             HHHhhcCCCCcCccccCCCchhhcccCCCCEEEEECchhcCC-CCCHHHHHHHHHHHHHHHHCCCEEEE-ecc-------
Confidence            9998875432110             1335666654211111 136789999999999986  666532 222       


Q ss_pred             CCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCC
Q 008025          280 VPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKD  359 (580)
Q Consensus       280 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~  359 (580)
                       |.+.+..      ...+......+.+..+..++......+.+.++.++..+..++..+|.+++.+|+.+++.++++|++
T Consensus       257 -~~~~~~~------~~l~~~~~~~e~~~~~~~~~~~~~~~~~p~~~~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~~  329 (561)
T TIGR02713       257 -APFLETA------ALLYEGPWVAERYAAVGEFVEAQPDALDPVVRGIITSATRFSAADAFAAQYRLAALRRKAEALLAG  329 (561)
T ss_pred             -hhHHHHH------HHHHHHHHHHHHHHHHHHHHhhChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             2221110      001111122233444556666667789999999999999999999999999999999999999999


Q ss_pred             CCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHHHHHHHHH
Q 008025          360 DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLLDTVQNMY  438 (580)
Q Consensus       360 ~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le  438 (580)
                      +|+||+||+|.+++.. +...+.......+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..+++++..++
T Consensus       330 ~DvLl~Pt~p~~~~~~-~~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le  408 (561)
T TIGR02713       330 VDVLLVPTAPTHPTIE-EVLADPVGLNSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQ  408 (561)
T ss_pred             CCEEEeCCCCCCCCch-hccCCchhhhhhhhcccccccccCCceEEeecccCCCCCCEEEEEEcCCCChHHHHHHHHHHH
Confidence            9999999999987543 32222222233334589999999999999999986 799999999999999999999999998


Q ss_pred             HHH
Q 008025          439 ASL  441 (580)
Q Consensus       439 ~~l  441 (580)
                      +..
T Consensus       409 ~~~  411 (561)
T TIGR02713       409 AAS  411 (561)
T ss_pred             hcc
Confidence            753

Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.

>PRK06828 amidase; Provisional

Probab=100.00  E-value=1.8e-76  Score=617.09  Aligned_cols=387  Identities=18%  Similarity=0.212  Sum_probs=302.2

Q ss_pred             HhhhhhhHH-----HHHHHH----hh--hcc---CCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccc
Q 008025           12 LGLGLAGIL-----LMTKKL----KK--NIK---QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFD   70 (580)
Q Consensus        12 ~~~~l~~~~-----~~~~~~----~~--~~~---~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~   70 (580)
                      ++.+|+.++     ++.|++    +|  +.|   |.+|||++...+ ++++++       .+...|||+||||+|||+|+
T Consensus        14 ~~~~l~~~l~~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~g~~~gpL~GvPv~vKD~~~   92 (491)
T PRK06828         14 TIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPD-AIFIAEALDHERKIKGVRGPLHGIPVLLKDNIE   92 (491)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHH-HHHHHHHHHHHHhcCCCCCCccCceeeeeeeEE
Confidence            566777773     444442    33  677   689999997665 333322       35567999999999999999


Q ss_pred             cCC-cccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccc-----cCCCCCCCCCCCCCCCC---CCCCC
Q 008025           71 IEG-YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAP---SQMPG  141 (580)
Q Consensus        71 ~~g-~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~-----~~~~~~~~G~~~NP~~~---~~~~G  141 (580)
                      |+| ++||+||+.+.+  +++.+|+++|++||++|||++||||||||+++     .++.|.+||+|+||||+   .|+||
T Consensus        93 v~gg~~tt~Gs~~~~~--~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~r~pG  170 (491)
T PRK06828         93 TNDSMHTSAGTIALEQ--HISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMFVG  170 (491)
T ss_pred             ecCCCcCCcCcHHHcC--CCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCCcCCC
Confidence            996 999999999987  78899999999999999999999999999974     58999999999999999   68999


Q ss_pred             CCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcC
Q 008025          142 GSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQ  221 (580)
Q Consensus       142 GSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~  221 (580)
                      |||||||++||+|++|+|+|||||||||+||+||||||||||+|++|+.|++|+++++|++|||+|+++|++.+++++.+
T Consensus       171 GSSgGsAaaVAag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~s~d~~Gp~arsv~D~a~~~~~l~g  250 (491)
T PRK06828        171 GSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTVTDAAILLGSLTG  250 (491)
T ss_pred             cCchHHHHHHHcCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCccCCCeeccccCCHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             CCccc---------------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccc
Q 008025          222 LPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDS  278 (580)
Q Consensus       222 ~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~  278 (580)
                      .+..+                     ..++.||++..+.+......++++.++++++++.|.  |++|++..++..    
T Consensus       251 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrigv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~~~~~p~----  326 (491)
T PRK06828        251 VDEKDVVTHKSEGIAEHDYTKYLDANGLNGAKIGVYNNAPKEYYESGEYDEKLFKETIEVLRSEGATVVEDIDIPS----  326 (491)
T ss_pred             CCccCccccccCcCCCCchhhhhccccCCCCEEEEEcCccccccCCCHHHHHHHHHHHHHHHhcCCEEEecccCcc----
Confidence            33211                     134566766432111111257899999999999986  777754333221    


Q ss_pred             cCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHH----------------------HhhCCCCCHHHHH-HHHHhhcCC
Q 008025          279 KVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWI----------------------ESVKPALDPDISA-EIGEMLEIS  335 (580)
Q Consensus       279 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~-~~~~g~~~s  335 (580)
                          +.....         ..+...|+...+..++                      ......+++.... .++.+..++
T Consensus       327 ----~~~~~~---------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  393 (491)
T PRK06828        327 ----FHREWS---------WGVLLYELKHSLDNYLSKLPSTIPVHSISELMEFNENIAERALKYGQTKLERRKDFPNTLR  393 (491)
T ss_pred             ----chhHHH---------HHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhhchhhhhccCHHHHHHHHhcCCCCC
Confidence                110000         0000111111111111                      1222356775444 566777889


Q ss_pred             HHHHHHHHHHHHHHH--HHHHhhcCC--CCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC
Q 008025          336 ETVIENCKSIRNEMR--SAISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY  411 (580)
Q Consensus       336 ~~~~~~a~~~r~~~~--~~~~~~~~~--~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~  411 (580)
                      ..+|.++++.|..+.  +.++++|++  +|+||+||++..                      .+.|++|+|+++||++..
T Consensus       394 ~~~y~~a~~~r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~----------------------~~~~~~GlPaisvP~G~~  451 (491)
T PRK06828        394 NPEYLNARLEDIYFSQEQGIDFALEKYNLDAILFPSYIGS----------------------TICAKAGYPSIAIPAGYM  451 (491)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHhcCCCEEEeCCCCcc----------------------cchhhcCCCeEEeecCCC
Confidence            999999999888754  799999984  899999999763                      234699999999999985


Q ss_pred             -CCCCcccceecccCCChHHHHHHHHHHHH
Q 008025          412 -DKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (580)
Q Consensus       412 -~~lp~g~q~~~~~~~d~~ll~la~~le~~  440 (580)
                       +|+|+|+|+++++++|..+++++..+|+.
T Consensus       452 ~~GlPvGlQlig~~~~D~~LL~~A~a~E~~  481 (491)
T PRK06828        452 EGGRPFGITLASTAFSEGTLIKLAYAFEQA  481 (491)
T ss_pred             CCCcCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence             79999999999999999999999999865

>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence

Probab=100.00  E-value=3.3e-78  Score=639.20  Aligned_cols=385  Identities=30%  Similarity=0.424  Sum_probs=293.4

Q ss_pred             hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHH
Q 008025           28 KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTL  100 (580)
Q Consensus        28 ~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l  100 (580)
                      ++.||.+|||++..++.++++|+       .+...|||+||||+|||+|+++|++||+||..+.+  .++++|+++|+||
T Consensus        11 ~~~~~~~na~~~~~~~~a~~~A~~~d~~~~~~~~~~pL~Gip~~vKD~~~~~g~~tt~G~~~~~~--~~~~~~a~~v~~L   88 (441)
T PF01425_consen   11 EAYNPELNAFVEVDFDEALAQARELDARRARGKPRGPLHGIPISVKDNIDVAGLPTTAGSPALAD--NPPTEDAPVVQRL   88 (441)
T ss_dssp             HHHHHHH--EEEEEHHHHHHHHHHHHHHHHTTSSSSTTTT-EEEEETTBSBTTSBB-TTSGGGTT--BBBSSS-HHHHHH
T ss_pred             HHhCcccCEEEEECcHHHHHHHHHHHHHHhhcCCCCCCCCCceeccccccccccccccccccccC--cCcccccchhhhe
Confidence            37899999999998877666543       46789999999999999999999999999999997  6899999999999


Q ss_pred             HhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCcccc
Q 008025          101 VEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGF  180 (580)
Q Consensus       101 ~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~Gl  180 (580)
                      |++|||++||||||||+++.++.|..||+|+||||+.++|||||||||++||+|++|+|+|||||||||+||+|||||||
T Consensus        89 ~~aGai~~gkt~~~e~~~~~~~~~~~~g~~~Np~~~~~~~GGSS~Gsaaavaag~~~~a~GtDtgGSiR~PAa~~Gv~Gl  168 (441)
T PF01425_consen   89 RAAGAIIIGKTNMPEFAMGPTTSNPLYGRTRNPWNPSRTPGGSSGGSAAAVAAGFVPLAIGTDTGGSIRIPAAFCGVVGL  168 (441)
T ss_dssp             HHTT-EEEEEE--SGGGCSSSSTTTTTEE-EBTTBTTBE--SSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEE
T ss_pred             ecccccceeeecccceeccccccccccccccCcccccccccccccccccccceecccccccccccccccCchhcccccee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc-------------------CCCCceEEEccchhh
Q 008025          181 RPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA-------------------QRSPRQIIIADDCFE  241 (580)
Q Consensus       181 kPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~-------------------~~~~~~l~i~~~~~~  241 (580)
                      |||+|++|+.|++|++.++|++|||+|+++|+..+++++.+.+..+                   ...+.||++..+...
T Consensus       169 kPT~G~vs~~G~~~~~~~~d~~GpmaRsv~Dl~~~l~vl~g~~~~d~~~~~~~~~~~~~~~~~~~~~~~lrIGv~~~~~~  248 (441)
T PF01425_consen  169 KPTRGRVSRDGVFPLSPSFDTVGPMARSVEDLALLLDVLAGPDPWDPDSLPVPPPPPDFDAPLPKSLKGLRIGVPRDDGQ  248 (441)
T ss_dssp             E-STTSS--TTB-CSSTTT-EEEEEESSHHHHHHHHHHHBSCBTTBTTSCSTT--SS-CSTTTTSTTTT-EEEEEGGGG-
T ss_pred             ccccccccccccccccccccccccccCcHHHHHHHHHHhcCCCccCCCccccccccccccccccccccCccccccccccc
Confidence            9999999999999999999999999999999999999987654211                   123467777665431


Q ss_pred             hcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhhh------hHHHH
Q 008025          242 LLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNN------HNEWI  313 (580)
Q Consensus       242 ~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  313 (580)
                       ....++++.++++++++.|+  |++|++ +        .+|.+.....       .+..+...+....      +..++
T Consensus       249 -~~~~~~~v~~a~~~a~~~L~~~G~~vv~-~--------~~p~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~  311 (441)
T PF01425_consen  249 -WVPVDPEVRRAFEEAAEALEAAGAEVVE-V--------DLPDLDEAMD-------AYYRIFVSEGAANLARYKDFARLL  311 (441)
T ss_dssp             -SSTSSHHHHHHHHHHHHHHHHTT-EEEE-E----------TTGGHHHH-------HHHHHHHHHHHHHHTTTCSHHHHH
T ss_pred             -cccccHHHHHHHHHHHHhhccccccccc-c--------cCchHHHHHH-------HHhhhHHHHHHHHHhhhhHHHHhh
Confidence             23458899999999999986  766543 2        2233322211       1111111122211      11222


Q ss_pred             -HhhCCCCCHHHHHHHHHhhcCCHH-----HHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCc--hHH-
Q 008025          314 -ESVKPALDPDISAEIGEMLEISET-----VIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML--SED-  384 (580)
Q Consensus       314 -~~~~~~~~~~~~~~~~~g~~~s~~-----~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~--~~~-  384 (580)
                       ......+.+.+..++..+......     .|.++.+.|..+++.+.++|+++|+||+||++.++|+++.....  ... 
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~  391 (441)
T PF01425_consen  312 AKWRDPPLSPIVRSRLEQGAAISSAEDDSEYYLQAQRRRARLRRRFDELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTA  391 (441)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHCTTTTTTHHHHHHHHHHHHHHHHHHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHH
T ss_pred             hcccccccccchhhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcCCCccccccccccchhh
Confidence             222345667777777766543333     38999999999999999999999999999999999999987531  111 


Q ss_pred             H--HHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHH
Q 008025          385 Y--QNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLL  431 (580)
Q Consensus       385 ~--~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll  431 (580)
                      .  ...+..+|.++|++|+|++++|++.. +|+|+|+|+++++++|+.+|
T Consensus       392 ~~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvqlvg~~~~D~~LL  441 (441)
T PF01425_consen  392 LWNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQLVGRPGSDEKLL  441 (441)
T ss_dssp             HHHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEEEESTTBHHHHH
T ss_pred             hhhhhhhhccccccccccCcceeeecCCCCCCcCEeEEEECCCCCccCcC
Confidence            1  22344578999999999999999996 89999999999999999875

They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....

>PRK11910 amidase; Provisional

Probab=100.00  E-value=1.2e-74  Score=602.54  Aligned_cols=392  Identities=20%  Similarity=0.271  Sum_probs=296.6

Q ss_pred             cchhHHHHhhhhhhHH-----HHHHHH----hh--hccC---CccceeeccccCCCCCCC-----CCCCCCCCCCceeee
Q 008025            5 SANLWVLLGLGLAGIL-----LMTKKL----KK--NIKQ---DFGAFIEKLQLLPPPQPL-----PPKAPHPLTGLSFAV   65 (580)
Q Consensus         5 ~~~~~~~~~~~l~~~~-----~~~~~~----~~--~~~~---~~~a~~~~~~~~~~~~~~-----~~~~~gpl~Gvp~~v   65 (580)
                      .|.+...++.+|+.++     ++.|++    +|  ++|+   .+|||++...+ +.++|+     ....+||||||||+|
T Consensus       159 ~~~i~~~ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~-Al~~A~~lD~~~~~~~gPL~GIPv~V  237 (615)
T PRK11910        159 EPLIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPT-IIAEAEQLDKENTTNKSALYGMPVLL  237 (615)
T ss_pred             cccchhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHH-HHHHHHHHHHHhccCCCCcCCCEEEE
Confidence            3556666777887774     444442    33  6676   89999998764 233222     112358999999999


Q ss_pred             ecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccc-----cCCCCCCCCCCCCCCCCCCCC
Q 008025           66 SDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAPSQMP  140 (580)
Q Consensus        66 KD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~-----~~~~~~~~G~~~NP~~~~~~~  140 (580)
                      ||||+++|++||+||.++.+  .++.+||++|+|||+||||++||||||||+++     .+++|.+||+|+||||++|+|
T Consensus       238 KDni~t~G~pTTaGS~al~~--~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~~~~r~p  315 (615)
T PRK11910        238 KDNIGTKELPTSAGTVALKD--WVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPYSSNLDP  315 (615)
T ss_pred             EcCcccCCCccCcccHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCCCCCCCC
Confidence            99999999999999999987  78999999999999999999999999999976     457889999999999999999


Q ss_pred             CCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhc
Q 008025          141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL  220 (580)
Q Consensus       141 GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~  220 (580)
                      ||||||||+|||+|++++|+|||||||||+||+||||||||||+|++|+.|++|+++++|++|||+|++.|++.+++++.
T Consensus       316 GGSSsGSAAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV~D~a~ll~vi~  395 (615)
T PRK11910        316 SGSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTVNDAYLTTNALT  395 (615)
T ss_pred             CCCCchHHHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCcc-----cCCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhH
Q 008025          221 QLPFA-----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGEL  293 (580)
Q Consensus       221 ~~~~~-----~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~  293 (580)
                      +.+..     ....+.||++..+.      .++++..+++++++.|.  |++|++..++        |.+...       
T Consensus       396 g~~~~~~l~~~~lkglRIGv~~~~------~~~~v~~a~~~a~~~L~~~Ga~Vve~~~~--------p~~~~~-------  454 (615)
T PRK11910        396 NTTSNPPLSTDALKGKRIGLLADG------ESNEETAVIKKIKLDLQKAGATIIEGIAV--------GEFEQK-------  454 (615)
T ss_pred             CCCCcCccCcccCCCCEEEEECCC------CCHHHHHHHHHHHHHHHHCCCEEEeCCCC--------ccHHHH-------
Confidence            64321     12455677765431      24577788888888875  7776542222        222111       


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHhhC--------------------CCCCHHHHHHHHHhh-cCCHHH-HHHHHHHHHHHHH
Q 008025          294 KNVMRLIQRYEFKNNHNEWIESVK--------------------PALDPDISAEIGEML-EISETV-IENCKSIRNEMRS  351 (580)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~g~-~~s~~~-~~~a~~~r~~~~~  351 (580)
                      ...+..+...|+...+..|+....                    ..+++.  .++..+. .++..+ +..+.+.|..+++
T Consensus       455 ~~~~~~l~~~E~~~~l~~yl~~~~~~v~sL~dl~~fn~~~~~~~~~~gq~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  532 (615)
T PRK11910        455 DTDYASLLNADFKHDLNQFLQVNHSPMSTLESIIQFNQTNPTRNMKYGQS--ELVKSQQSTITKQQADNLASNLIQSSQN  532 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcCcccccCcCHH--HHHhhhccCCCHHHHHHHHHHHHHHHHH
Confidence            112222333455555555542211                    123333  1112122 234443 2336667778888


Q ss_pred             HHHhhcC--CCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC--CCCCcccceecccCCC
Q 008025          352 AISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY--DKCPTSVSFIARHGGD  427 (580)
Q Consensus       352 ~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~--~~lp~g~q~~~~~~~d  427 (580)
                      .++++|+  ++|+||+|+....                    .+...+++|+|+++||+|..  +|+|+|+|+++++++|
T Consensus       533 ~l~~~~~~~~lDalv~P~~~~~--------------------~~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG~~~sE  592 (615)
T PRK11910        533 ELDSVLQKDKLDAVVTIGMGGS--------------------VMFLAPIAGNPELTIPAGYDEESNQPISLTFITARNSD  592 (615)
T ss_pred             HHHHHHHHCCCcEEEeCCCCCc--------------------chhhhhhcCCCeEEecccCCCCCCcCeEEEEECCCCCH
Confidence            9999995  7999999974210                    01123489999999999976  5999999999999999


Q ss_pred             hHHHHHHHHHHHHHH
Q 008025          428 RFLLDTVQNMYASLQ  442 (580)
Q Consensus       428 ~~ll~la~~le~~l~  442 (580)
                      ..|++++..+|+..+
T Consensus       593 ~~LL~~A~a~Eq~t~  607 (615)
T PRK11910        593 KILLNMGYAYEQQSK  607 (615)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999987644

>PRK06707 amidase; Provisional

Probab=100.00  E-value=1.4e-72  Score=590.22  Aligned_cols=386  Identities=22%  Similarity=0.256  Sum_probs=293.5

Q ss_pred             hHHHHhhhhhhHH-----HHHHHH----hh--hcc---CCccceeeccccCCCCCCC------CCCCCCCCCCceeeeec
Q 008025            8 LWVLLGLGLAGIL-----LMTKKL----KK--NIK---QDFGAFIEKLQLLPPPQPL------PPKAPHPLTGLSFAVSD   67 (580)
Q Consensus         8 ~~~~~~~~l~~~~-----~~~~~~----~~--~~~---~~~~a~~~~~~~~~~~~~~------~~~~~gpl~Gvp~~vKD   67 (580)
                      +...+..+|+.++     ++.|++    +|  +.|   |.+|+|++...+ ++++|+      +....+||+||||+|||
T Consensus        68 i~~~~i~~l~~~~~~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~~~pL~GiPi~vKD  146 (536)
T PRK06707         68 VVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPN-AMEEARKLDQERSRNKKSNLYGIPVVVKD  146 (536)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHH-HHHHHHHHHHHHhcCCCCCcCCCeEEEec
Confidence            3445666777664     444442    33  566   579999997654 333321      12235899999999999


Q ss_pred             cccc-CCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccc-----cCCCCCCCCCCCCCCCC-CCCC
Q 008025           68 LFDI-EGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYS-----INGTNKHYDTPTNPAAP-SQMP  140 (580)
Q Consensus        68 ~~~~-~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~-----~~~~~~~~G~~~NP~~~-~~~~  140 (580)
                      ||++ +|+|||+||.++.+  +++.+||++|+|||++|||++||||||||++.     .+++|.+||+|+||||+ .++|
T Consensus       147 ~i~~~~g~~TtaGs~~l~~--~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~~~~~~p  224 (536)
T PRK06707        147 NVQTAKVMPTSAGTYVLKD--WIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYGPIKFDT  224 (536)
T ss_pred             ccccCCCCccCcccHhhcc--CCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCCcccCCC
Confidence            9999 99999999999987  68899999999999999999999999999963     57889999999999999 6899


Q ss_pred             CCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhc
Q 008025          141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL  220 (580)
Q Consensus       141 GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~  220 (580)
                      ||||||||+|||+|++++|+|||||||||+||++|||||||||+|++|+.|++|+++++|++|||+|++.|++.+++++.
T Consensus       225 GGSSsGSAaAVAag~~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~slDt~Gp~artV~D~a~~l~~~~  304 (536)
T PRK06707        225 SGSSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTVKDAATLFNAMI  304 (536)
T ss_pred             CCCCchHHHHHhCCCCceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCcccccCeecCeeCCHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCccc---------------------CCCCceEEEccchhhhcCCChhHHHHH-HHHHHHHHh--CCcccccccccccc
Q 008025          221 QLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQV-VIKSTEKLF--GRQVLKHENLGEYF  276 (580)
Q Consensus       221 ~~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~-~~~a~~~l~--G~~vv~~~~l~~~~  276 (580)
                      +.+..+                     ..+++||++..+..     .++++.++ ++++++.|.  |+++++.+++.   
T Consensus       305 g~d~~d~~~~~~~~~~~~~~~~~l~~~~l~~~rigv~~~~~-----~~~~~~~a~~~~a~~~L~~~Ga~iv~~~~l~---  376 (536)
T PRK06707        305 GYDEKDVMTEKVKDKERIDYTKDLSIDGLKGKKIGLLFSVD-----QQDENRKAVAEKIRKDLQDAGAILTDYIQLN---  376 (536)
T ss_pred             CCCCCccccccccccCCcchhhhccccCCCCCEEEEECCcC-----CCHHHHHHHHHHHHHHHHHcCCEEEeccCCc---
Confidence            543211                     13456777754321     24566666 477777775  77775423221   


Q ss_pred             cccCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHhhCC----------CC-CHHHHHHHHHhhcCC---------H
Q 008025          277 DSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKP----------AL-DPDISAEIGEMLEIS---------E  336 (580)
Q Consensus       277 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~g~~~s---------~  336 (580)
                           ... .        . ...+...|+..++..|+.....          .+ .+.++.++..+..+.         .
T Consensus       377 -----~~~-~--------~-~~~~~~~e~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  441 (536)
T PRK06707        377 -----NGG-V--------D-NLQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFNKKDSKRRIKYGQTLIEASEKSAITK  441 (536)
T ss_pred             -----hhh-H--------H-HHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHhcCHHHHHHHHccchhhhhhhhccccc
Confidence                 100 0        0 0011123444444443321100          02 255666665554322         2


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhcC--CCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC-C
Q 008025          337 -TVIENCKSIRNEMRSAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-D  412 (580)
Q Consensus       337 -~~~~~a~~~r~~~~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~  412 (580)
                       ..+..+.+.|..+++.++++|+  ++|+||+|..                      ..|.++|++|+|+++||+|.. +
T Consensus       442 ~~~~~~~~~~r~~~~~~~~~~~~~~~~Dall~p~~----------------------~~t~~an~aG~PaitvP~G~~~~  499 (536)
T PRK06707        442 DEFEKVVQTSQENAKKELDRYLVEKGLDALVMINN----------------------EEVLLSAVAGYPELAVPAGYDNN  499 (536)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEecCC----------------------CcchhhHhcCCCeEEEecccCCC
Confidence             2334566778889999999998  8999999831                      025678999999999999986 8


Q ss_pred             CCCcccceecccCCChHHHHHHHHHHHHH
Q 008025          413 KCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (580)
Q Consensus       413 ~lp~g~q~~~~~~~d~~ll~la~~le~~l  441 (580)
                      |+|+|+|++++++.|..+++++..+|+..
T Consensus       500 GlP~Glqlig~~~~e~~LL~~A~~~E~~~  528 (536)
T PRK06707        500 GEPVGAVFVGKQFGEKELFNIGYAYEQQS  528 (536)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHHhC
Confidence            99999999999999999999999998654

>PRK06565 amidase; Validated

Probab=100.00  E-value=1.6e-70  Score=567.67  Aligned_cols=423  Identities=19%  Similarity=0.225  Sum_probs=297.9

Q ss_pred             HHHhhhhhhHH-----HHHHHH----hh--hcc-----CCccceeeccccCCCCCC-------CCCCCCCCCCCceeeee
Q 008025           10 VLLGLGLAGIL-----LMTKKL----KK--NIK-----QDFGAFIEKLQLLPPPQP-------LPPKAPHPLTGLSFAVS   66 (580)
Q Consensus        10 ~~~~~~l~~~~-----~~~~~~----~~--~~~-----~~~~a~~~~~~~~~~~~~-------~~~~~~gpl~Gvp~~vK   66 (580)
                      ..++.+|+.++     ++.|++    +|  +.|     |.+|+|++...+ ++++|       +.++..|||+||||+||
T Consensus         6 ~~si~~L~~~l~~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~-Al~~A~~~D~~~~~g~~~gpL~GIPi~vK   84 (566)
T PRK06565          6 EVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPD-ALKEAEASDARRARGETLGPLDGIPYTAK   84 (566)
T ss_pred             cCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHH-HHHHHHHHHHHHhcCCCCCCCCCCEEEEe
Confidence            34556666663     445543    33  667     789999986544 33332       23456799999999999


Q ss_pred             cccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCC----CCCC
Q 008025           67 DLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQ----MPGG  142 (580)
Q Consensus        67 D~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~----~~GG  142 (580)
                      |+|+++|++||+||+.+.+  +++++||++|++||+||||++||||||||+++.++ |.+||+|+||||+.|    +|||
T Consensus        85 D~~~v~G~~TT~Gs~~l~~--~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~g~~~-~~~~G~t~NP~n~~~~~~~~pGG  161 (566)
T PRK06565         85 DSYLVKGLTAASGSPAFKD--LVAQRDAFTIERLRAAGAICLGKTNMPPMANGGMQ-RGVYGRAESPYNAAYLTAPFASG  161 (566)
T ss_pred             cccccCCCCcccccHhhcC--CCCCCCHHHHHHHHHCCCEEEEecccchhhhCCCC-CCCCCCcCCCcCcccCcCCCCCC
Confidence            9999999999999999987  68999999999999999999999999999999876 679999999999999    5999


Q ss_pred             CCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCC
Q 008025          143 SSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQL  222 (580)
Q Consensus       143 SSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~  222 (580)
                      ||||||++||+|++++|+|||||||||+||++|||||||||+|++|+.|++|+++++|++|||+|+++|++.+++++.+.
T Consensus       162 SSgGsAaAVAag~~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~s~D~vGp~aRsV~D~a~~l~vl~g~  241 (566)
T PRK06565        162 SSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTMADLLEVLDVIVAD  241 (566)
T ss_pred             CCccHHHHHhCCCCcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccCCCCeecceeCCHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988753


Q ss_pred             Ccc--------------------------------cCCCCceEEEccchhhhcC------------------CChhHHHH
Q 008025          223 PFA--------------------------------AQRSPRQIIIADDCFELLK------------------IPADRVVQ  252 (580)
Q Consensus       223 ~~~--------------------------------~~~~~~~l~i~~~~~~~~~------------------~~~~~~~~  252 (580)
                      +..                                ...+++||+++...+....                  ..++++.+
T Consensus       242 D~~d~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  321 (566)
T PRK06565        242 DPDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGPTGQRIHTRPSVID  321 (566)
T ss_pred             CcccccchhhccccccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccccccccCCCHHHHH
Confidence            211                                0124567777655432110                  02468999


Q ss_pred             HHHHHHHHHh--CCccccccccccc--ccccCC---chhhhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHhhC------
Q 008025          253 VVIKSTEKLF--GRQVLKHENLGEY--FDSKVP---SLKGFHKTNGELK--NVMRLIQRYEFKNNHNEWIESVK------  317 (580)
Q Consensus       253 ~~~~a~~~l~--G~~vv~~~~l~~~--~~~~~p---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------  317 (580)
                      +++++++.|+  |++|++ +++...  ++...+   .+.++.....++.  +....     ....+..|+....      
T Consensus       322 ~~~~a~~~L~~~Ga~vv~-v~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~e~~~~-----~~~~~~~yL~~~~~~~~~s  395 (566)
T PRK06565        322 LWEAARRALEAAGAEVIE-VDFPLVSNCEGDRPGAPTVFNRGLVSPEFLHDELWEL-----SGWAFDDFLRANGDPKLNR  395 (566)
T ss_pred             HHHHHHHHHHHCCCEEEE-eecCCccccccccccccccccccccchhhhhccccch-----hHHHHHHHHHhcCCCCCCC
Confidence            9999999986  887753 333320  111111   0000000000000  00000     0000111111111      


Q ss_pred             -------------CCCCH----HHH----HHHHH---h-hc-CCHHHHHHHHHHHHHHHH-HHHhhcC--CCCEEEEcCC
Q 008025          318 -------------PALDP----DIS----AEIGE---M-LE-ISETVIENCKSIRNEMRS-AISSLLK--DDGILVTPTT  368 (580)
Q Consensus       318 -------------~~~~~----~~~----~~~~~---g-~~-~s~~~~~~a~~~r~~~~~-~~~~~~~--~~Dvll~Pt~  368 (580)
                                   ...-+    ...    ...+.   + .. .....|..+++.++..++ .++++|.  +.|+||.|+.
T Consensus       396 l~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~lDalv~P~~  475 (566)
T PRK06565        396 LADVDGPQIFPHDPGTLPNREGDLAAGMDEYVNMAKRGLKSWDQIPTLPDGLRGLEKTRKLDLEDWMDGLGLDAVLFPTV  475 (566)
T ss_pred             HHHhhhhhcccCcccccccchhhhhhhHHHHHHHhhcCCCChhhccchHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC
Confidence                         00001    010    01110   1 01 112235566666666765 6777776  5689999999


Q ss_pred             CCCCCCCCCCCCchHH--HHHH-Hhhhhhc-ccccCCceeeeeCcCC--CCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025          369 AYPPPKLGGKEMLSED--YQNR-AFSLLSI-ASVSGCCQVTVPLGYY--DKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (580)
Q Consensus       369 ~~~ap~~~~~~~~~~~--~~~~-~~~~t~~-~n~~g~P~~~~P~~~~--~~lp~g~q~~~~~~~d~~ll~la~~le~~l~  442 (580)
                      +..+|..+........  |+.. +.+.+.. .+.+|+|+|+||+|..  .|+|+|++++++.++|..|++++..+|+..+
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~~A~a~E~~~~  555 (566)
T PRK06565        476 ADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRFAAAFEATGS  555 (566)
T ss_pred             CCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHHHHHHHHHHhc
Confidence            9999988765433211  1111 1223334 4899999999999986  7999999999999999999999999997654

>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.7e-66  Score=516.75  Aligned_cols=377  Identities=28%  Similarity=0.369  Sum_probs=277.0

Q ss_pred             CCCCCCCCCCCceeeeecccccCCccc-CCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCC
Q 008025           50 LPPKAPHPLTGLSFAVSDLFDIEGYVT-GFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYD  128 (580)
Q Consensus        50 ~~~~~~gpl~Gvp~~vKD~~~~~g~~t-t~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G  128 (580)
                      +.+...+||+||||+|||+|+++|.+| |++|..+.+  +.++.||++|++||++||+++|||||+||+|+.++++.+||
T Consensus        74 ~~~~~~~~L~Gv~i~IKDnf~tk~~~t~t~~S~~l~~--~~~p~dAtVV~~L~~aGaiilGKTnmdEfamg~~~~~s~~G  151 (506)
T KOG1211|consen   74 KNGMEKGPLQGVPIAIKDNFDTKDKPTTTAASWMLEH--YNPPKDATVVKKLREAGAIILGKTNMDEFAMGSSGENSHYG  151 (506)
T ss_pred             cCCCcCCCcCCceEEEeeceecCCccCCchhhhhhcc--CCCccccHHHHHHhhcCceEEccccHHHHhhccccccccCC
Confidence            345678999999999999999999999 777777765  78999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccC
Q 008025          129 TPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD  208 (580)
Q Consensus       129 ~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~  208 (580)
                      +|+|||++.+.|||||||||++||++++++|+|||||||+|+||++|||+|||||+|++|+.|++|++.++|++||+||+
T Consensus       152 ~t~np~~~~~v~GGSS~GSA~aVaa~l~~~alGtDTgGSvR~PAa~~gvvG~KPT~G~~Sr~Gvip~~~SlD~vGi~a~t  231 (506)
T KOG1211|consen  152 TTRNPLSLWRVPGGSSSGSAAAVAAGLCDFALGTDTGGSVRVPAAYCGVVGFKPTYGRVSRFGVIPLSNSLDTVGIFART  231 (506)
T ss_pred             ccCCCCcccccCCCCcchhHHHHHhccchhhccccCCCCccCcHHhcCccccccCcceecccccchhhhcccccchhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCccc--------------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcc
Q 008025          209 PKILRHVGHVLLQLPFAA--------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQV  266 (580)
Q Consensus       209 ~~d~~~v~~~l~~~~~~~--------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~v  266 (580)
                      +.|...|..++.+.+..+                    ...+.|++|+.......  .+.++...++...++|.  |..+
T Consensus       232 v~D~~~v~~~~~g~d~~d~~t~~~p~~~~~~~~~~~~~~l~~~r~GIp~~~~~~~--~~~~v~~~~~~~~~~l~~~~~~~  309 (506)
T KOG1211|consen  232 VYDAVEVLGAIVGIDELDSTTLAQPAPFPIVLELIGSMDLSGLRIGIPKERLVQG--LSSGVLSLWEELADLLGSLGAKV  309 (506)
T ss_pred             cchhHHHhhhhcCCCccCcccccCCcccccchhhcccccccccccCceeeccccc--ccHHHHHHHHHHHHHhhcccccc
Confidence            999988888766543211                    23345666665543321  24677888877776664  4333


Q ss_pred             cccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHh---------hhhHHHHHh-hCCCCCHHHHHHHHHhhc---
Q 008025          267 LKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFK---------NNHNEWIES-VKPALDPDISAEIGEMLE---  333 (580)
Q Consensus       267 v~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~~g~~---  333 (580)
                      . ...+.......... . ..    ...+....+.++...         .....++.. +...+..++..++..+.-   
T Consensus       310 ~-~~~lp~~~~~~~~~-~-~~----s~~ea~s~laryd~~~~~~r~~~~~~~~~v~~~~rs~~~n~~v~~~i~~g~~~l~  382 (506)
T KOG1211|consen  310 N-EVSLPTTINGLCGY-S-LS----SASEAASNLARYDGILYGHRRDFKVADEEVYALSRSFGFNFEVKGRILSGNYILA  382 (506)
T ss_pred             e-eeecchhhhccccc-c-cc----chhhhhhhHHHHHHHHhhcchhhhhccceeeeeccccccchhhcceeeccceehh
Confidence            1 12222221111110 0 00    011222222222221         111122211 122344455555554322   


Q ss_pred             --CCHHHHHHHHHHHHHHHHHHH---hhcCCCCEEEEcCCCCCCCCCCCCCC-chHHHHHHHhhhhhcccccCCceeeee
Q 008025          334 --ISETVIENCKSIRNEMRSAIS---SLLKDDGILVTPTTAYPPPKLGGKEM-LSEDYQNRAFSLLSIASVSGCCQVTVP  407 (580)
Q Consensus       334 --~s~~~~~~a~~~r~~~~~~~~---~~~~~~Dvll~Pt~~~~ap~~~~~~~-~~~~~~~~~~~~t~~~n~~g~P~~~~P  407 (580)
                        ....-+.++++.|+.....+.   +.+++.|+|++||.+  ++....... ...........+++++|+.|+|++++|
T Consensus       383 ~~~~~~~f~~a~~~rr~i~~~~~~~~~~~~~vD~l~~pt~~--~~~~~~~~~~~~~~~~~~~~~~~~~anlaGlP~isiP  460 (506)
T KOG1211|consen  383 KENDQDYFEKALEVRRLIQEDFNRRKAALEGVDYLVTPTAP--PPLYREFEKETLFAVSTLDDIFTQPANLAGLPAISIP  460 (506)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhhhhcccccccCCeeeccCCC--CcchhhhhhcccccccccccceeecccccCCCceEEe
Confidence              233445778888888888887   788999999999943  333332221 111111222348999999999999999


Q ss_pred             CcCC-CCCCcccceecccCCChHHHHHHHHHHH
Q 008025          408 LGYY-DKCPTSVSFIARHGGDRFLLDTVQNMYA  439 (580)
Q Consensus       408 ~~~~-~~lp~g~q~~~~~~~d~~ll~la~~le~  439 (580)
                      +|.. +|+|+|+|+++..+.|..++.++...++
T Consensus       461 ~G~~~~g~P~glqi~g~~~~e~~~~~l~~~~~~  493 (506)
T KOG1211|consen  461 VGLKNGGLPIGLQIMGGAFAEPTLIDLALAIGQ  493 (506)
T ss_pred             eeecCCCCceEEEeecccccchHHHHHHHhhcc
Confidence            9986 8999999999999999988888777654

>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-61  Score=489.70  Aligned_cols=411  Identities=22%  Similarity=0.250  Sum_probs=298.1

Q ss_pred             hHHHHhhhhhhHHHHHHH-----H----hh--hccCCccceeeccccCCCCCCCC-------CCCCCCCCCceeeeeccc
Q 008025            8 LWVLLGLGLAGILLMTKK-----L----KK--NIKQDFGAFIEKLQLLPPPQPLP-------PKAPHPLTGLSFAVSDLF   69 (580)
Q Consensus         8 ~~~~~~~~l~~~~~~~~~-----~----~~--~~~~~~~a~~~~~~~~~~~~~~~-------~~~~gpl~Gvp~~vKD~~   69 (580)
                      +..+|+++|+..++.+|.     +    +|  .+|+.+||+++..++.+..+++.       ...++||.||||+|||+|
T Consensus        52 il~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~~~~~~k~PL~GvP~SvKe~~  131 (560)
T KOG1212|consen   52 ILKLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYTAPLYEKPPLYGVPFSVKESI  131 (560)
T ss_pred             HhhcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhhchhcccCCceecceehhhhe
Confidence            456789999999777773     2    33  89999999999988876555432       235689999999999999


Q ss_pred             ccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHH
Q 008025           70 DIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAV  149 (580)
Q Consensus        70 ~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaa  149 (580)
                      .++|+.+|.|......  .++++|+.+|+.|+++|||++.+||.||..++..|.|..||+|.||||.+|+|||||||+||
T Consensus       132 ~vkg~d~T~G~~~~~~--~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~ls~~tsn~v~G~T~NP~d~~rt~GGSSGGEaA  209 (560)
T KOG1212|consen  132 SVKGYDSTAGLLARTN--QPATTDSVIVEFLKKLGAIPFVLTNVPQSLLSYETSNPVYGTTKNPYDLSRTPGGSSGGEAA  209 (560)
T ss_pred             eecCccccchhhhccC--CCCccchHHHHHHHHcCCCceeecCCchhhhhhhhcCCCCCCCCChhhccCCCCCCchHHHH
Confidence            9999999999987665  79999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCC----CCCcccccccCHHHHHHHHHHhcCCCcc
Q 008025          150 AVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPIST----SLDTVGWFARDPKILRHVGHVLLQLPFA  225 (580)
Q Consensus       150 aVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~----sld~~G~~ar~~~d~~~v~~~l~~~~~~  225 (580)
                      ++++|.++||+|||.||||||||+|||+||+|||.+|+|..|..|..+    .+-..|||+|+++|+..++..+.+....
T Consensus       210 LigaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~r~v~dl~~~L~~~i~~~~~  289 (560)
T KOG1212|consen  210 LLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMTRDVEDLVLLLRLMIGDSGP  289 (560)
T ss_pred             HHhCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCcccccHHHHHHHHHHhcCCccc
Confidence            999999999999999999999999999999999999999998876643    3457899999999999999876653210


Q ss_pred             ---c--------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhh
Q 008025          226 ---A--------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGF  286 (580)
Q Consensus       226 ---~--------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~  286 (580)
                         +              ...+.++++..+  +....+.+...+++.+.++.+.  ||++++ .+        .|.++..
T Consensus       290 ~~~~p~~~p~~~~~~~y~~~~~~~ig~~~~--dg~~~~~pa~~RAv~~~~~~l~~~g~~~~~-f~--------~~~~~~~  358 (560)
T KOG1212|consen  290 KLLDPYPVPVKFMEVFYKSSDKLVIGYYVD--DGFFDPSPAMQRAVQETIDLLEKAGHEVVP-FD--------LPDLKHV  358 (560)
T ss_pred             cccCCCCCCchhhhhhhhccCCccceEEec--CCCCCcCHHHHHHHHHHHHHHHhcCcceeE-ec--------CCcchHH
Confidence               0              122233333221  2223356788888888877765  777643 11        1222211


Q ss_pred             hhhhhhHHHHHHHHHHHHHhhhh-HHHH-HhhC---------CCCCHHHHH-----------HHHHhhcCCHHHHHHHHH
Q 008025          287 HKTNGELKNVMRLIQRYEFKNNH-NEWI-ESVK---------PALDPDISA-----------EIGEMLEISETVIENCKS  344 (580)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~---------~~~~~~~~~-----------~~~~g~~~s~~~~~~a~~  344 (580)
                      .+       .+.. ...+....+ ..+. ....         ..+......           .+.........+.++.+.
T Consensus       359 ~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  430 (560)
T KOG1212|consen  359 AD-------MFFR-VMPDDGDYISEMYLLDIGDPTLNLFVKFVELPKVFLGRSLHSYIVLPFCIMDAKNSDTAELRQNYE  430 (560)
T ss_pred             HH-------HHHH-HcccccchhhHHhhcccCccccchheeeeeccHHHHhhhhhhhHhHHHHHHhhcccchHHHHHHHH
Confidence            11       0000 000000000 0000 0000         011111111           111122223333344444


Q ss_pred             HHHHHH--HHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC-----------
Q 008025          345 IRNEMR--SAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-----------  411 (580)
Q Consensus       345 ~r~~~~--~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-----------  411 (580)
                      .++.++  ........+.||||||+.+.|||+|+.....     ...+.||.+||++|+|+.+||++..           
T Consensus       431 ~~e~yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~-----~~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~~~~~~  505 (560)
T KOG1212|consen  431 DIESYRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLLL-----VNGFSYTGLFNVLDFPAGVVPVTTVTQKDEKEEEYP  505 (560)
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchhh-----ccchhHHHHHHhccCCcccccccccchhhhcccccc
Confidence            444444  4444556789999999999999999975321     1235699999999999888887531           


Q ss_pred             ----------------CCCCcccceecccCCChHHHHHHHHHHHHHHHh
Q 008025          412 ----------------DKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQ  444 (580)
Q Consensus       412 ----------------~~lp~g~q~~~~~~~d~~ll~la~~le~~l~~~  444 (580)
                                      .|+|+|+|+++.+++|+.++++++.+|+.+..+
T Consensus       506 ~~D~~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~gg~  554 (560)
T KOG1212|consen  506 MNDKWATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFGGW  554 (560)
T ss_pred             cccHHHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhCCc
Confidence                            589999999999999999999999999877654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=4.6e-18  Score=158.53  Aligned_cols=121  Identities=40%  Similarity=0.579  Sum_probs=116.6

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      +....++.++..|+.+++.++|.+|+..|.+||+++|.++.+|.+++.+|.++|+|+.|+++|+.+|++||.+.++|.+|
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      |.+|+.+|+|++|++.|+++|+++|+|...+..|...++++
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL  196 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999988875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.66  E-value=2.5e-15  Score=131.97  Aligned_cols=113  Identities=13%  Similarity=0.109  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008025          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG  546 (580)
Q Consensus       467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g  546 (580)
                      ++.+|..+++.|+|++|+..|++++.++|.+..+|+++|.++..+|++++|+.+|+++++++|+++.+++++|.++..+|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          547 YYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       547 ~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ++++|++.|+++++++|+++..+..++.+...+
T Consensus       107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999999999999999999999998877653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.59  E-value=6.1e-15  Score=148.46  Aligned_cols=141  Identities=21%  Similarity=0.232  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008025          430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL  509 (580)
Q Consensus       430 ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~  509 (580)
                      ++.....+..+++.+.++..         .+|+..++|+++|+.+...+.|+.|+.+|.+++.+.|+++.++-|+|.+|+
T Consensus       227 ~f~~~Gei~~aiq~y~eAvk---------ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy  297 (966)
T KOG4626|consen  227 VFNAQGEIWLAIQHYEEAVK---------LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY  297 (966)
T ss_pred             HHhhcchHHHHHHHHHHhhc---------CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe
Confidence            44455555555555554433         346888899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          510 ESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       510 ~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ++|+.+.|+..|+++|++.|+.+.+|.|+|.++...|+..||+.+|++++.+.|+.+++.++|+.++...
T Consensus       298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~  367 (966)
T KOG4626|consen  298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQ  367 (966)
T ss_pred             ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999998887643

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.55  E-value=1.8e-13  Score=117.78  Aligned_cols=106  Identities=9%  Similarity=-0.012  Sum_probs=101.4

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      ++..+..|.+|..++..|++++|...|+-+...+|.+...|++||.|+..+|+|++|+..|.+++.++|+++.+++++|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            57788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                      |+...|+.+.|++.|+.++...-.++
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRICGEVS  137 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHhccCh
Confidence            99999999999999999999974443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=1.4e-13  Score=137.62  Aligned_cols=141  Identities=38%  Similarity=0.530  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008025          429 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY  508 (580)
Q Consensus       429 ~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~  508 (580)
                      .++.-....++.++.......         .+|+.+......|+.+|+.|+|..|+.+|+++|..+|+++..|.|+|.||
T Consensus       332 ~~ls~lk~~Ek~~k~~e~~a~---------~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~  402 (539)
T KOG0548|consen  332 DLLSKLKEAEKALKEAERKAY---------INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY  402 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh---------hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            344444445544444433322         34566777888899999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          509 LESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       509 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .+++++..|+.+++++++++|++.++|++.|.++..+.+|++|.+.|+++++++|++..+...+.++.+.
T Consensus       403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999888664

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.54  E-value=3.3e-14  Score=143.28  Aligned_cols=127  Identities=18%  Similarity=0.173  Sum_probs=83.7

Q ss_pred             ccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~  530 (580)
                      .-+.+.....++.+++++++|+++..+|.+++|...|.++++..|+.+.+++|||.+|.++|++++|+.+|+++|+++|+
T Consensus       341 ~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~  420 (966)
T KOG4626|consen  341 DCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT  420 (966)
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence            33444455556666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      .++++.|+|..|..+|+.++|+++|.+++..+|..+++..+|+.+.+
T Consensus       421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k  467 (966)
T KOG4626|consen  421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK  467 (966)
T ss_pred             HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence            66666666666666666666666666666666666666666666554

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.54  E-value=2e-13  Score=119.11  Aligned_cols=121  Identities=16%  Similarity=0.166  Sum_probs=113.2

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      ..+|++....+.+|..+++.|++++|+..|++++..+|.+..++.++|.++..++++++|++.++++++.+|+++..+++
T Consensus        11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~   90 (135)
T TIGR02552        11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH   90 (135)
T ss_pred             cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            34567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|.++...|++++|.+.|+++++++|++.........+.+.
T Consensus        91 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  131 (135)
T TIGR02552        91 AAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAM  131 (135)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            99999999999999999999999999999877776666544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.53  E-value=1.5e-13  Score=127.30  Aligned_cols=125  Identities=22%  Similarity=0.254  Sum_probs=112.4

Q ss_pred             cccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHcC
Q 008025          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY-LESGS--FLQAEADCTKAINLD  528 (580)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~~~~~al~l~  528 (580)
                      .+......+|++.+.|+.+|..+...|++++|+..|+++++++|++...+.++|.++ ...|+  +++|.+.++++++++
T Consensus        61 ~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d  140 (198)
T PRK10370         61 ALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD  140 (198)
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence            344555667899999999999999999999999999999999999999999999975 67787  599999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       529 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      |++..+++++|.++++.|+|++|+++|+++++++|.+.+-...+..|.
T Consensus       141 P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i~~i~  188 (198)
T PRK10370        141 ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLVESIN  188 (198)
T ss_pred             CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            999999999999999999999999999999999998766655555544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.53  E-value=2.1e-13  Score=138.33  Aligned_cols=114  Identities=35%  Similarity=0.495  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~  545 (580)
                      .+...|+.++..|+|++|++.|+++++++|++..+|+++|.+|+.+|++++|+.+++++++++|+++.+|+++|.+|+.+
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          546 GYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       546 g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      |+|++|+.+|+++++++|+++.+...++.+...+
T Consensus        84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=3e-13  Score=131.84  Aligned_cols=118  Identities=36%  Similarity=0.484  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~~~~~al~  526 (580)
                      ..+......|+.+|+.|+|..|+..|.++++.-...               ..++.|++.||+++++|.+|++.|+++|+
T Consensus       206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            455667889999999999999999999999863321               35789999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          527 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       527 l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ++|+|.+++|++|.++..+++|+.|+..|+++++++|+|..+...+..|.+.+
T Consensus       286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.45  E-value=1.6e-12  Score=116.91  Aligned_cols=136  Identities=20%  Similarity=0.092  Sum_probs=122.7

Q ss_pred             HHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025          442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC  521 (580)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  521 (580)
                      ...+...++..++..+..+|+...+|..++.+|.+.|+.+.|-+.|+++++++|++.++++|.|.-++.+|+|++|.+.|
T Consensus        47 ~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F  126 (250)
T COG3063          47 QQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQF  126 (250)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHH
Confidence            44555666666677788889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          522 TKAINL--DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       522 ~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++|+..  .+.....|-|+|.|..++|+++.|.++|+++++++|+++.....+.+...
T Consensus       127 ~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~  184 (250)
T COG3063         127 ERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHY  184 (250)
T ss_pred             HHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHH
Confidence            999984  34557799999999999999999999999999999999998888877643

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.45  E-value=2.5e-12  Score=127.69  Aligned_cols=107  Identities=22%  Similarity=0.216  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      ...+..++++|..+...|++++|+..|+++++++|+++.+|+++|.++..+|++++|++.|+++++++|++..+|+++|.
T Consensus        61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~  140 (296)
T PRK11189         61 EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI  140 (296)
T ss_pred             HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            35578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKR  567 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~  567 (580)
                      ++...|++++|++.|+++++++|+++.
T Consensus       141 ~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999974

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.43  E-value=3.6e-12  Score=111.65  Aligned_cols=118  Identities=34%  Similarity=0.469  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      ...+..+...|+.+|++|+|.+|...|..||++.|..     .-.|.|+|.+.++++.++.|++.|.++|+++|.+.+++
T Consensus        92 ~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl  171 (271)
T KOG4234|consen   92 IEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL  171 (271)
T ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence            3567788999999999999999999999999999875     45788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .+++.+|.++.+|++|+++|++.++++|....+.....++..+
T Consensus       172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~  214 (271)
T KOG4234|consen  172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPK  214 (271)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence            9999999999999999999999999999999888887776544

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.40  E-value=9.7e-13  Score=124.12  Aligned_cols=112  Identities=46%  Similarity=0.587  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~  545 (580)
                      .+.+.|+.||++|.|++||++|.+++..+|.++..+.|++.+|+++.+|..|..+|+.++.++..+.++|.+++.+...+
T Consensus        99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen   99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL  178 (536)
T ss_pred             HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          546 GYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       546 g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      |+.++|.++++.+|+++|++.+....++.+..
T Consensus       179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  179 GNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             hhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            99999999999999999999998888887754

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.35  E-value=2.2e-11  Score=134.05  Aligned_cols=124  Identities=19%  Similarity=0.158  Sum_probs=94.2

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  533 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~  533 (580)
                      ......+|.....++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|+.+|++++|+++|+++++++|++..
T Consensus       355 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~  434 (615)
T TIGR00990       355 SKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF  434 (615)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence            33344456666777777777777778888888888777777777777778888887788888888888888888887777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +++++|.++.++|++++|+..|+++++..|+++.++..++.+..
T Consensus       435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~  478 (615)
T TIGR00990       435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLL  478 (615)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            77777877777888888888888887777777777777766543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.34  E-value=2.9e-11  Score=102.65  Aligned_cols=111  Identities=18%  Similarity=0.183  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLR  537 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~  537 (580)
                      .+.++.+|..++++|++++|++.|+++++.+|++   ..+++.+|.++++.+++++|++.|+++++.+|++   ..+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3578999999999999999999999999999876   5789999999999999999999999999999885   678999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR  574 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  574 (580)
                      +|.++..++++++|.++++++++..|++..+.....+
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~  118 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR  118 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence            9999999999999999999999999999887766543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=1.7e-12  Score=133.05  Aligned_cols=151  Identities=13%  Similarity=0.113  Sum_probs=112.3

Q ss_pred             cCCChHHHHHHHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008025          424 HGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN  503 (580)
Q Consensus       424 ~~~d~~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~  503 (580)
                      +...+....++..+--   ..+...+...+...++.+|..+.+|-.+|-.+....+|+.|..+|++||..+|.+..+||.
T Consensus       418 ~~sPesWca~GNcfSL---Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYG  494 (638)
T KOG1126|consen  418 PNSPESWCALGNCFSL---QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYG  494 (638)
T ss_pred             CCCcHHHHHhcchhhh---hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHh
Confidence            3344444444444321   1223334455666667777777777777777777777777777777777778888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          504 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       504 la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +|.+|+++++++.|+-+|++|++++|.+.......|..+.++|+.++|++.|++|+.++|.|+-..+..+.+..
T Consensus       495 lG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~  568 (638)
T KOG1126|consen  495 LGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF  568 (638)
T ss_pred             hhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888877777654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=2.2e-11  Score=119.60  Aligned_cols=124  Identities=19%  Similarity=0.168  Sum_probs=116.2

Q ss_pred             cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      ...-+|....+|-.+|..|..+++-..|++.|++|++.+|.|..+|+.||++|--++...=|+-+|++|+++.|++...|
T Consensus       356 ALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw  435 (559)
T KOG1155|consen  356 ALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLW  435 (559)
T ss_pred             HHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHH
Confidence            33456788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ..||.||.++++.++|++||.+++.....+..++..|+.+.+.+
T Consensus       436 ~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l  479 (559)
T KOG1155|consen  436 VALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL  479 (559)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988765

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.32  E-value=4.7e-11  Score=131.38  Aligned_cols=118  Identities=21%  Similarity=0.278  Sum_probs=113.2

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      .+..+..+..+|..++.+|++++|+..|+++++++|++...|..+|.++..+|++++|+++|+++++++|+++.+|+++|
T Consensus       327 ~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg  406 (615)
T TIGR00990       327 GEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRA  406 (615)
T ss_pred             ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          540 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      .++..+|++++|+.+|+++++++|++..++..++.+..
T Consensus       407 ~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~  444 (615)
T TIGR00990       407 QLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY  444 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence            99999999999999999999999999999988887654

>PRK12370 invasion protein regulator; Provisional

Probab=99.30  E-value=4.1e-11  Score=129.63  Aligned_cols=130  Identities=11%  Similarity=-0.045  Sum_probs=109.1

Q ss_pred             hhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      .+...+.+....+|++..++..+|..+...|++++|+..|+++++++|+++.+++.+|.++..+|++++|++++++++++
T Consensus       322 ~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l  401 (553)
T PRK12370        322 KAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL  401 (553)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            33444455566678888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHh
Q 008025          528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE-PTNKRASLSADRLRK  577 (580)
Q Consensus       528 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l~~l~~  577 (580)
                      +|+++.+++.++.+++..|++++|++.++++++.. |+++.++..++.+..
T Consensus       402 ~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~  452 (553)
T PRK12370        402 DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLS  452 (553)
T ss_pred             CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence            99888877777777888899999999999988775 778888888877654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.30  E-value=3.8e-11  Score=135.49  Aligned_cols=126  Identities=12%  Similarity=0.011  Sum_probs=114.0

Q ss_pred             ccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~  530 (580)
                      ..+.+....+|+ ...+..+|.++.+.|++++|+..|+++++++|++..+++++|.++.+.|++++|++.|+++++++|+
T Consensus       597 ~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        597 NDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            333444445565 7889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++.+++++|.++..+|++++|+++|+++++++|++.......+.+.+
T Consensus       676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~  722 (987)
T PRK09782        676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ  722 (987)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence            99999999999999999999999999999999999888887777654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.30  E-value=5.2e-11  Score=107.37  Aligned_cols=115  Identities=17%  Similarity=0.064  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      ..+.+..++|..|++.|++..|.+.++++|+.+|++..+|..++.+|.++|+.+.|.+.|++|++++|++...++|.|.-
T Consensus        33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F  112 (250)
T COG3063          33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence            44677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHH
Q 008025          542 REMLGYYKEAIEDFSYALVL--EPTNKRASLSADRLR  576 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~l~~l~  576 (580)
                      ++.+|+|++|.++|++++..  .+.-...+.+++.|-
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca  149 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA  149 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence            99999999999999999975  455666777766653

>PRK12370 invasion protein regulator; Provisional

Probab=99.30  E-value=4e-11  Score=129.68  Aligned_cols=131  Identities=14%  Similarity=-0.088  Sum_probs=117.4

Q ss_pred             HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (580)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  525 (580)
                      ...+...+.+....+|+.+..++.+|..+...|++++|+..|+++++++|.+...++.++.+++..|++++|++.+++++
T Consensus       354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l  433 (553)
T PRK12370        354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR  433 (553)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            44455566677788899999999999999999999999999999999999998888888888889999999999999999


Q ss_pred             HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          526 NLD-KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       526 ~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      +.+ |+++.++.++|.+|..+|++++|++.+++.....|.+..+...+....
T Consensus       434 ~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~  485 (553)
T PRK12370        434 SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY  485 (553)
T ss_pred             HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence            885 889999999999999999999999999999999998888888776653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=2.4e-11  Score=121.77  Aligned_cols=112  Identities=39%  Similarity=0.501  Sum_probs=107.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      ..+...|+..+..|+|+.|+.+|.+++.++|.+...|.|+..+|..+++|++|+++..+.++++|+++++|.++|.++.-
T Consensus         3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~   82 (539)
T KOG0548|consen    3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG   82 (539)
T ss_pred             hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          545 LGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       545 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      +|+|++|+..|.+.|+.+|+|+..+..+..+.
T Consensus        83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             cccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            99999999999999999999999999988765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.28  E-value=9.5e-11  Score=127.35  Aligned_cols=122  Identities=5%  Similarity=-0.061  Sum_probs=108.8

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      ...++..++++.+|.+..+.|++++|...++.++++.|++..++.+++.++.+++++++|+..++++++.+|+++.+++.
T Consensus        80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            34567788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      +|.++.++|+|++|.++|++++..+|+++.++..++.+.+.+
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~  201 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR  201 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            999999999999999999999998899999999888877643

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=3.2e-11  Score=123.79  Aligned_cols=136  Identities=17%  Similarity=0.084  Sum_probs=127.4

Q ss_pred             hHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK  523 (580)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  523 (580)
                      ++.+.+...+...+..++.+-.+||.+|.+|.++++++.|.-+|++|++.+|.+......+|..+.++|+.++|++.|++
T Consensus       469 ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~  548 (638)
T KOG1126|consen  469 EEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEK  548 (638)
T ss_pred             HHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence            34444556666777788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       524 al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      |+.++|.++-..|.+|.+++.+++|++|++-+++..++-|++..++..++++.+.+
T Consensus       549 A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~  604 (638)
T KOG1126|consen  549 AIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL  604 (638)
T ss_pred             HHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998765

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.27  E-value=1.3e-10  Score=115.41  Aligned_cols=129  Identities=17%  Similarity=0.119  Sum_probs=106.3

Q ss_pred             hhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      +...+.+....+|+...+++.+|..+...|++++|++.|+++++++|++..+++++|.+++..|++++|+++++++++++
T Consensus        83 A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~  162 (296)
T PRK11189         83 ARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD  162 (296)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            33445555666788899999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             CCCH----------------------------------------------------------------------HHHHHH
Q 008025          529 KKNV----------------------------------------------------------------------KAYLRR  538 (580)
Q Consensus       529 p~~~----------------------------------------------------------------------~a~~~l  538 (580)
                      |+++                                                                      ++|+++
T Consensus       163 P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~L  242 (296)
T PRK11189        163 PNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYL  242 (296)
T ss_pred             CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            6432                                                                      256777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHh
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEP-TNKRASLSADRLRK  577 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~l~~l~~  577 (580)
                      |.++.++|++++|+.+|+++++++| ++.+....+-++.+
T Consensus       243 g~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~  282 (296)
T PRK11189        243 AKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELAL  282 (296)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            8888888888888888888888886 55666555555443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.27  E-value=1.1e-10  Score=107.49  Aligned_cols=120  Identities=15%  Similarity=0.150  Sum_probs=112.4

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      .++.+...+..+|..++.+|+|.+|+..++++..++|+++++|+.+|.+|.++|++++|...|.+++++.|+++.+..|+
T Consensus        95 ~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNl  174 (257)
T COG5010          95 AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNL  174 (257)
T ss_pred             cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhH
Confidence            34566667777999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      |..|+-.|+++.|+..+.++...-+.+..+..++..+..+
T Consensus       175 gms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~  214 (257)
T COG5010         175 GMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL  214 (257)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence            9999999999999999999999999999999998876543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=4.2e-11  Score=118.31  Aligned_cols=95  Identities=42%  Similarity=0.678  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      +.+..+.++||.+|++|+|++||++|+++|++.|+.+..|.|++-||..+|++++.++++.++++++|++.+++++++.+
T Consensus       113 k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A  192 (606)
T KOG0547|consen  113 KYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASA  192 (606)
T ss_pred             HHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHH
Q 008025          542 REMLGYYKEAIEDFS  556 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~  556 (580)
                      +..+|++++|..+.-
T Consensus       193 ~E~lg~~~eal~D~t  207 (606)
T KOG0547|consen  193 HEQLGKFDEALFDVT  207 (606)
T ss_pred             HHhhccHHHHHHhhh
Confidence            999999999998875

>PLN02789 farnesyltranstransferase

Probab=99.26  E-value=1.9e-10  Score=114.13  Aligned_cols=128  Identities=14%  Similarity=0.009  Sum_probs=117.5

Q ss_pred             hccccccchhchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHH
Q 008025          450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF--LQAEADCTKAIN  526 (580)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~  526 (580)
                      .......+..+|++..+|..++.++...+ +++++++.++++++.+|++..+|+.++.++.++++.  ++++++++++++
T Consensus        57 L~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~  136 (320)
T PLN02789         57 LDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS  136 (320)
T ss_pred             HHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence            33444566778999999999999999998 689999999999999999999999999999999874  788999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          527 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       527 l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++|+|..+|++++.++..++++++++++++++++++|.|..+|...+.+..
T Consensus       137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~  187 (320)
T PLN02789        137 LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT  187 (320)
T ss_pred             hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999887653

>PRK15331 chaperone protein SicA; Provisional

Probab=99.23  E-value=4.3e-10  Score=97.43  Aligned_cols=142  Identities=13%  Similarity=0.045  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008025          429 FLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAY  508 (580)
Q Consensus       429 ~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~  508 (580)
                      ..-+++..+...+........      ......+..+..+..|..++++|+|++|...|+-....+|.++++|+.||.|+
T Consensus         8 ~~~~~~~~i~~al~~G~tlk~------l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~   81 (165)
T PRK15331          8 SEERVAEMIWDAVSEGATLKD------VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVC   81 (165)
T ss_pred             hHHHHHHHHHHHHHCCCCHHH------HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence            344455555555554332221      11223567788999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          509 LESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       509 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ..+++|++|+..|..+..++++++...+..|.||..+|+.++|+.+|+.+++ .|.+.........+..
T Consensus        82 Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~  149 (165)
T PRK15331         82 QLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLE  149 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 5777766655544443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.23  E-value=4.1e-11  Score=90.99  Aligned_cols=67  Identities=43%  Similarity=0.600  Sum_probs=40.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 008025          497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEP  563 (580)
Q Consensus       497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p  563 (580)
                      ++..|+.+|.+++.+++|++|+++|+++++++|+++.+|+++|.++..+| ++++|+++++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            34555566666666666666666666666666666666666666666665 46666666666666555

...

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.22  E-value=2.9e-10  Score=128.43  Aligned_cols=118  Identities=18%  Similarity=0.065  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      +.....+..++......|++++|+..|+++++++|+ ..+++++|.++.++|++++|+++|+++++++|+++.+++++|.
T Consensus       573 P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~  651 (987)
T PRK09782        573 LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY  651 (987)
T ss_pred             CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            444455555666666779999999999999999996 9999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ++..+|++++|++.|+++++++|+++.++..++.+...+
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l  690 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL  690 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999999887643

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.21  E-value=3.6e-10  Score=102.87  Aligned_cols=108  Identities=23%  Similarity=0.275  Sum_probs=99.4

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      .++..+..++.+|..+...|++++|+.+|+++++..|+.   ..+++++|.++..+|++++|+++++++++.+|++..++
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            346778889999999999999999999999999987653   57899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCH
Q 008025          536 LRRGTAREMLGY--------------YKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       536 ~~lg~~~~~~g~--------------~~~A~~~~~~al~l~p~~~  566 (580)
                      ..+|.++..+++              +++|.++++++++++|++.
T Consensus       110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            999999999988              7889999999999999873

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.21  E-value=6.6e-10  Score=105.86  Aligned_cols=119  Identities=18%  Similarity=0.140  Sum_probs=85.4

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHH
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--KKNVKAY  535 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--p~~~~a~  535 (580)
                      ...|.....+..+|..++..|++++|++.|+++++..|++...+++++.++...|++++|++.++++++..  +.....+
T Consensus        59 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  138 (234)
T TIGR02521        59 EHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSL  138 (234)
T ss_pred             HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHH
Confidence            34455666777777777777888888888888777777777777777777777777777777777777643  3445667


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      +++|.++...|++++|.+.|+++++.+|++...+..++.+.
T Consensus       139 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  179 (234)
T TIGR02521       139 ENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY  179 (234)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence            77777777777777777777777777777766666665553

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.20  E-value=2.8e-10  Score=105.50  Aligned_cols=102  Identities=17%  Similarity=0.124  Sum_probs=95.5

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-HHcCC--HHHHHH
Q 008025          477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR-EMLGY--YKEAIE  553 (580)
Q Consensus       477 ~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~-~~~g~--~~~A~~  553 (580)
                      .++.++++..|+++++.+|++.+.|+.+|.+|..+|++++|++.|+++++++|++...++++|.++ ...|+  +++|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            677899999999999999999999999999999999999999999999999999999999999985 67787  599999


Q ss_pred             HHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          554 DFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       554 ~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .++++++++|++..++..++.....
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~  156 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFM  156 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHH
Confidence            9999999999999999999876543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.20  E-value=2.6e-10  Score=91.65  Aligned_cols=99  Identities=39%  Similarity=0.570  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~  545 (580)
                      .++.+|..++..|++++|+..++++++..|++..+++.+|.++...+++++|+++++++++..|.+...++.++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCC
Q 008025          546 GYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       546 g~~~~A~~~~~~al~l~p~  564 (580)
                      |++++|.+.++++++.+|+
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999998874

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.4e-10  Score=114.14  Aligned_cols=117  Identities=20%  Similarity=0.242  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      .++...-.||.|.-.++.++|+.+|+++++++|+...+|-.+|-=|+++++...|++.|++|++++|.+..+||.+|.+|
T Consensus       329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY  408 (559)
T KOG1155|consen  329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY  408 (559)
T ss_pred             CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH
Confidence            45566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ..++.+.=|+-+|++|+++.|+|...|..|+++..++
T Consensus       409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl  445 (559)
T KOG1155|consen  409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL  445 (559)
T ss_pred             HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.20  E-value=5.7e-11  Score=90.19  Aligned_cols=67  Identities=33%  Similarity=0.502  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDK  529 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p  529 (580)
                      ++..|+.+|..++..|+|++|+..|+++++++|+++.+++++|.+|.+++ ++++|+++++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46789999999999999999999999999999999999999999999999 79999999999999998

...

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.19  E-value=1.6e-10  Score=109.43  Aligned_cols=116  Identities=25%  Similarity=0.283  Sum_probs=107.2

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      ++.+.+.++++|..++..|++.+|+..|..+++.+|++..+++.+|.+|+.+|+-..|+.++.++|++.|+...+...+|
T Consensus        34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg  113 (504)
T KOG0624|consen   34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG  113 (504)
T ss_pred             CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q 008025          540 TAREMLGYYKEAIEDFSYALVLEPTNK---RASLSADRL  575 (580)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~l  575 (580)
                      .++.++|++++|.+.|+++++-+|++.   ++...+..+
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~  152 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI  152 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH
Confidence            999999999999999999999999654   444444433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=8e-11  Score=111.37  Aligned_cols=119  Identities=23%  Similarity=0.163  Sum_probs=108.7

Q ss_pred             chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHH
Q 008025          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKKNVK  533 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~l~p~~~~  533 (580)
                      ...+|.+++-|..+|.+|+.++++..|...|.+++++.|++++.+..+|.+++.+.+   ..++.+.+++++++||++..
T Consensus       149 L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir  228 (287)
T COG4235         149 LQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR  228 (287)
T ss_pred             HHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence            345789999999999999999999999999999999999999999999999987754   67999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      +.+.+|..+++.|+|.+|...+++.+++.|.+..-...+.+.
T Consensus       229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            999999999999999999999999999999877666555543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.19  E-value=4.9e-11  Score=120.54  Aligned_cols=103  Identities=17%  Similarity=0.248  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      .++++...+|..|+-.|+|++|+++|+.||..+|++...|+.||-++-.-.+..+|++.|++|+++.|++..++||+|++
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS  507 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS  507 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCC
Q 008025          542 REMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      +..+|.|+||.++|-.+|.+.+.
T Consensus       508 ~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  508 CMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999876

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.17  E-value=1.5e-10  Score=101.58  Aligned_cols=97  Identities=18%  Similarity=0.081  Sum_probs=88.8

Q ss_pred             hhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      +...+......+|.+...++.+|.++...|++++|+..|+++++++|+++.+++++|.++..+|++++|++.|+++++++
T Consensus        43 A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359         43 AVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            33444555666788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHc
Q 008025          529 KKNVKAYLRRGTAREML  545 (580)
Q Consensus       529 p~~~~a~~~lg~~~~~~  545 (580)
                      |+++..+.+++.+...+
T Consensus       123 p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        123 YADASWSEIRQNAQIMV  139 (144)
T ss_pred             CCChHHHHHHHHHHHHH
Confidence            99999999999887654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.17  E-value=9.2e-10  Score=105.98  Aligned_cols=113  Identities=12%  Similarity=0.037  Sum_probs=101.8

Q ss_pred             HHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHH
Q 008025          465 EIAKEKGNQA-YKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLR  537 (580)
Q Consensus       465 ~~~~~~g~~~-~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~  537 (580)
                      ...|..+..+ ++.|+|++|+..|++.++.+|++   +.+++.+|.+|+..|++++|+..|+++++.+|++   +.+++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            4557777766 66799999999999999999998   5899999999999999999999999999998874   779999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +|.++..+|++++|++.|+++++..|+...+.....++..
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL~~  262 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRLNA  262 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHHhc
Confidence            9999999999999999999999999999988877777643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.15  E-value=5.5e-10  Score=121.48  Aligned_cols=155  Identities=11%  Similarity=-0.042  Sum_probs=124.6

Q ss_pred             eecccCCChHHHHHHHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 008025          420 FIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT  499 (580)
Q Consensus       420 ~~~~~~~d~~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~  499 (580)
                      ++..+..+...+.+...+...+...+..  ...+....+..|++..+...++.++.+++++++|+..++++++.+|+++.
T Consensus        78 ~~~~~~~~~~~~~~La~i~~~~g~~~ea--~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~  155 (694)
T PRK15179         78 YVRRYPHTELFQVLVARALEAAHRSDEG--LAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR  155 (694)
T ss_pred             HHHhccccHHHHHHHHHHHHHcCCcHHH--HHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH
Confidence            3334444444444444444444333322  23334555667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-HHHHHHHH
Q 008025          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA-SLSADRLR  576 (580)
Q Consensus       500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-~~~l~~l~  576 (580)
                      +++.+|.++.++|+|++|+..|+++++.+|++++++..+|.++..+|+.++|...|++++++...-... ...+..+.
T Consensus       156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  233 (694)
T PRK15179        156 EILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLN  233 (694)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999997665544 33444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=1.9e-10  Score=113.77  Aligned_cols=109  Identities=21%  Similarity=0.154  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008025          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG  546 (580)
Q Consensus       467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g  546 (580)
                      |..++..|..+.+-.+-...|+++.+++|++++.|+.+|..++-+++|++|+.+|+++++++|.++.+|..++.++++++
T Consensus       363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~  442 (606)
T KOG0547|consen  363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH  442 (606)
T ss_pred             HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          547 YYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       547 ~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      +++++...|+.+++..|+.++++...+++
T Consensus       443 k~~~~m~~Fee~kkkFP~~~Evy~~fAei  471 (606)
T KOG0547|consen  443 KIAESMKTFEEAKKKFPNCPEVYNLFAEI  471 (606)
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            55555555555555555555555544443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.14  E-value=8e-10  Score=121.67  Aligned_cols=114  Identities=15%  Similarity=0.128  Sum_probs=77.0

Q ss_pred             chHHHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLK----AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~----Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      .|+....++.+|..+...|++++    |+..|+++++++|++..++.++|.++.++|++++|+..++++++++|+++.++
T Consensus       242 ~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~  321 (656)
T PRK15174        242 GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVR  321 (656)
T ss_pred             CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            45556666667777777777664    66677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  573 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  573 (580)
                      +++|.+|.++|++++|++.|+++++.+|++...+..++
T Consensus       322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a  359 (656)
T PRK15174        322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA  359 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            77777777777777777777777776666655444433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.13  E-value=2.1e-09  Score=102.36  Aligned_cols=119  Identities=17%  Similarity=0.196  Sum_probs=107.4

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  536 (580)
                      ..+.....++.+|..++..|++++|++.|+++++..  +.....+.++|.++...|++++|++.++++++.+|++..+++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  173 (234)
T TIGR02521        94 LNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL  173 (234)
T ss_pred             hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHH
Confidence            345566788999999999999999999999999864  556788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          537 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       537 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      .+|.++...|++++|...+++++++.|.++..+..+..+..
T Consensus       174 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (234)
T TIGR02521       174 ELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIAR  214 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999988888776666554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.13  E-value=2.5e-10  Score=112.89  Aligned_cols=118  Identities=19%  Similarity=0.149  Sum_probs=105.2

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      +.+...+..+|.++.+.|++++|++.|+++++++|++..++..+++++...|+++++.+.+++..+..|+++..+..+|.
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~  222 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAA  222 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999988888899999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ++..+|++++|..+|+++++.+|+|+..+..++.+...
T Consensus       223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~  260 (280)
T PF13429_consen  223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ  260 (280)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred             Hhcccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999987654

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.13  E-value=2.4e-10  Score=107.37  Aligned_cols=121  Identities=18%  Similarity=0.160  Sum_probs=105.5

Q ss_pred             HHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 008025          441 LQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD  520 (580)
Q Consensus       441 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  520 (580)
                      .+..+..++...|...+..+|+++-.|.+++.+|.+.|+|+.|++..+++++++|+++.+|..||.+|+.+|+|++|++.
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a  171 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA  171 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            34455666677777788888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhh
Q 008025          521 CTKAINLDKKNVKAYLRRGTAREMLGYYK---EAIEDFSYALVL  561 (580)
Q Consensus       521 ~~~al~l~p~~~~a~~~lg~~~~~~g~~~---~A~~~~~~al~l  561 (580)
                      |+|+|+++|+|...+.+|..+-.++++..   .+...++.+..+
T Consensus       172 ykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i  215 (304)
T KOG0553|consen  172 YKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI  215 (304)
T ss_pred             HHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence            99999999999999999999988888766   444444444443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=3.2e-10  Score=110.10  Aligned_cols=116  Identities=33%  Similarity=0.518  Sum_probs=105.4

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  533 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~  533 (580)
                      ...++....+...|+..+++|+|..|.+.|..+|.++|++    +..|.+++.++..+|+.++|+.+|++++++|+.+.+
T Consensus       243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik  322 (486)
T KOG0550|consen  243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK  322 (486)
T ss_pred             hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence            4567788899999999999999999999999999999986    678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR  574 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  574 (580)
                      ++...|.|+..++++++|+++|++++++..+ ......+.+
T Consensus       323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~  362 (486)
T KOG0550|consen  323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLRE  362 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHH
Confidence            9999999999999999999999999999876 444444433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.12  E-value=9.6e-10  Score=105.70  Aligned_cols=114  Identities=22%  Similarity=0.239  Sum_probs=103.7

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---  533 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~---  533 (580)
                      ....+..++.+|..+++.|+|++|+..|+++++.+|+++   .+++.+|.+|..++++++|+..|+++++.+|++..   
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            456778999999999999999999999999999999875   68899999999999999999999999999998876   


Q ss_pred             HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025          534 AYLRRGTAREML--------GYYKEAIEDFSYALVLEPTNKRASLSAD  573 (580)
Q Consensus       534 a~~~lg~~~~~~--------g~~~~A~~~~~~al~l~p~~~~~~~~l~  573 (580)
                      +++.+|.++...        +++++|++.|+++++.+|++..++..+.
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            799999999987        8899999999999999999987765443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.12  E-value=1.8e-10  Score=91.07  Aligned_cols=82  Identities=27%  Similarity=0.404  Sum_probs=74.5

Q ss_pred             HccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025          476 KDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (580)
Q Consensus       476 ~~g~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~  553 (580)
                      .+|+|++|+..|+++++.+|.  +..+++.+|.||+++|+|++|++.+++ ++.++.+...++.+|.++.++|+|++|++
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  567888899999999999999999999 88999999999999999999999999999


Q ss_pred             HHHHH
Q 008025          554 DFSYA  558 (580)
Q Consensus       554 ~~~~a  558 (580)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.10  E-value=3e-09  Score=96.37  Aligned_cols=106  Identities=19%  Similarity=0.146  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      ...+..++.+|..+..+|+|++|+..|++++.+.|+.   ..+++++|.+|..+|++++|++.|+++++++|.+...+.+
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~  111 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNN  111 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence            4567888999999999999999999999999987763   4689999999999999999999999999999999999999


Q ss_pred             HHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCH
Q 008025          538 RGTARE-------MLGYYK-------EAIEDFSYALVLEPTNK  566 (580)
Q Consensus       538 lg~~~~-------~~g~~~-------~A~~~~~~al~l~p~~~  566 (580)
                      +|.++.       .+|+++       +|+..|++++.++|++.
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            999999       777766       66777778888888654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.10  E-value=1.5e-09  Score=119.56  Aligned_cols=124  Identities=10%  Similarity=-0.018  Sum_probs=107.4

Q ss_pred             hhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      +...+.......|+....++.+|......|++++|+..|+++++.+|+++.++..+|.++...|++++|++.|+++++++
T Consensus        61 A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~  140 (656)
T PRK15174         61 GLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF  140 (656)
T ss_pred             hHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            33334445556678888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025          529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  572 (580)
Q Consensus       529 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l  572 (580)
                      |++..++..++.++..+|++++|++.++++++..|+++.++..+
T Consensus       141 P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~  184 (656)
T PRK15174        141 SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC  184 (656)
T ss_pred             CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            99999999999999999999999999999999999888877554

>PLN02789 farnesyltranstransferase

Probab=99.08  E-value=1.5e-09  Score=107.87  Aligned_cols=122  Identities=17%  Similarity=0.116  Sum_probs=109.9

Q ss_pred             chhchHHHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008025          457 TFNQKQSAEIAKEKGNQAYKDKQW--LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  534 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~--~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a  534 (580)
                      +..+|++..+|+.++.++.+.++.  ++++++++++++.+|++..+|+.++.++..+++|++++++++++|+.+|+|..+
T Consensus        99 i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA  178 (320)
T PLN02789         99 AEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA  178 (320)
T ss_pred             HHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence            345678888999999999888874  789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHc---CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          535 YLRRGTAREML---GYY----KEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       535 ~~~lg~~~~~~---g~~----~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      |++++.++.++   +.+    ++++++..++++++|+|..+|..+..+...
T Consensus       179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~  229 (320)
T PLN02789        179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD  229 (320)
T ss_pred             HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence            99999999876   333    578899999999999999999999887653

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.07  E-value=5.5e-10  Score=83.58  Aligned_cols=64  Identities=30%  Similarity=0.381  Sum_probs=35.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       503 ~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                      .+|..+++.|+|++|++.|+++++.+|++..+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            3455555555555555555555555555555555555555555555555555555555555543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.07  E-value=1.6e-09  Score=127.45  Aligned_cols=130  Identities=18%  Similarity=0.197  Sum_probs=114.1

Q ss_pred             HhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHcC
Q 008025          447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT--------------YYSNRAAAYLESG  512 (580)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~--------------~~~~la~~~~~~~  512 (580)
                      ..+...+.+....+|++...+..+|.+++++|++++|+..|+++++++|++..              ....+|.++.+.|
T Consensus       286 ~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g  365 (1157)
T PRK11447        286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN  365 (1157)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence            34444455556667888999999999999999999999999999999998642              2245688899999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          513 SFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       513 ~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      ++++|++.|+++++++|++..+++.+|.++...|++++|+++|+++++++|++..++..+..+.
T Consensus       366 ~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988777664

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.07  E-value=3.2e-09  Score=119.35  Aligned_cols=117  Identities=13%  Similarity=0.158  Sum_probs=111.1

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      .+..+..+..+|..+.+.|++++|++.|+++++++|++..++..++.++...|++++|++.++++++.+|++.. ++.+|
T Consensus        45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la  123 (765)
T PRK10049         45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALA  123 (765)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHH
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999 99999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          540 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      .++...|++++|+..++++++++|++..++..++.+..
T Consensus       124 ~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049        124 YVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999988877653

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.06  E-value=4.6e-09  Score=100.95  Aligned_cols=117  Identities=17%  Similarity=0.083  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCC
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLES--------GSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~---~~~~la~~~~~~--------~~~~~A~~~~~~al~l~p~  530 (580)
                      ....+++.+|..+++.|++++|+..|+++++.+|++..   +++.+|.++++.        +++++|++.++++++.+|+
T Consensus        68 ~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  147 (235)
T TIGR03302        68 YAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN  147 (235)
T ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence            34468899999999999999999999999999998765   799999999987        7899999999999999999


Q ss_pred             CHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhh
Q 008025          531 NVKAY-----------------LRRGTAREMLGYYKEAIEDFSYALVLEPTN---KRASLSADRLRKV  578 (580)
Q Consensus       531 ~~~a~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~l~~~  578 (580)
                      +..++                 +.+|..+...|++++|+..|+++++..|++   +.++..++.+...
T Consensus       148 ~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~  215 (235)
T TIGR03302       148 SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLK  215 (235)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence            86542                 467888999999999999999999998765   4778888776654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.05  E-value=4.7e-09  Score=104.77  Aligned_cols=118  Identities=19%  Similarity=0.119  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      +.....+|..+..++..|++++|+..++..++..|+|+.++...+.++++.++.++|++.+++++.++|+....++++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            35566778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|.+.|++++|+..+++.+..+|+|+..|..|++.+..
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~  420 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE  420 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence            88888888888888888888888888888888877654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.05  E-value=6.7e-10  Score=83.09  Aligned_cols=65  Identities=20%  Similarity=0.284  Sum_probs=61.0

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008025          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (580)
Q Consensus       468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (580)
                      +.+|..+++.|+|++|++.|+++++.+|++..+++.+|.++..+|++++|++.|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999875

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.8e-09  Score=96.60  Aligned_cols=119  Identities=22%  Similarity=0.311  Sum_probs=104.6

Q ss_pred             ccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcC
Q 008025          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNN----------ATYYSNRAAAYLESG  512 (580)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~----------~~~~~~la~~~~~~~  512 (580)
                      ..|.....++......+.+.||.+|+.|+|.+|...|..|+..        .|.+          ...+.|.+.|++..+
T Consensus       165 e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~  244 (329)
T KOG0545|consen  165 ETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE  244 (329)
T ss_pred             ccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence            4555566666777889999999999999999999999998842        3443          356889999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025          513 SFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS  569 (580)
Q Consensus       513 ~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  569 (580)
                      +|-++++++...+..+|+|.++||.+|.++...-+.++|.++|+++++++|.-..+-
T Consensus       245 e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  245 EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            999999999999999999999999999999999999999999999999999876543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.04  E-value=4.5e-09  Score=123.57  Aligned_cols=130  Identities=14%  Similarity=0.103  Sum_probs=111.9

Q ss_pred             HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------------------
Q 008025          446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA------------------  507 (580)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~------------------  507 (580)
                      ...+...+.+....+|.+..+++.+|.++..+|++++|++.|+++++++|++..++..++.+                  
T Consensus       367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~  446 (1157)
T PRK11447        367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSA  446 (1157)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCH
Confidence            33444445555566778888999999999999999999999999999999988776655544                  


Q ss_pred             ------------------------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          508 ------------------------YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       508 ------------------------~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                                              +...|++++|++.|+++++++|+++.+++.+|.+|.++|++++|++.|+++++++|
T Consensus       447 ~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P  526 (1157)
T PRK11447        447 SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP  526 (1157)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence                                    44679999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHH
Q 008025          564 TNKRASLSADRL  575 (580)
Q Consensus       564 ~~~~~~~~l~~l  575 (580)
                      +++.++..++.+
T Consensus       527 ~~~~~~~a~al~  538 (1157)
T PRK11447        527 NDPEQVYAYGLY  538 (1157)
T ss_pred             CCHHHHHHHHHH
Confidence            999888766543

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.04  E-value=3.3e-10  Score=112.90  Aligned_cols=116  Identities=41%  Similarity=0.544  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~  543 (580)
                      +..+...++.++..++|+.|+..|.|+++++|+++.++.+++.++++.++|..|+.++.++++++|.+.++|+.+|.+..
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          544 MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       544 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      .++++.+|+..|++...+.|+++.+...+..+.+.+
T Consensus        84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v  119 (476)
T KOG0376|consen   84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV  119 (476)
T ss_pred             hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999987764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.03  E-value=2.5e-09  Score=93.10  Aligned_cols=94  Identities=19%  Similarity=0.234  Sum_probs=89.7

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          485 SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       485 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      +.|+++++++|++....+.+|.+++..+++++|++.++++++++|++..+++++|.++..+|++++|..+|+++++++|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhh
Q 008025          565 NKRASLSADRLRKV  578 (580)
Q Consensus       565 ~~~~~~~l~~l~~~  578 (580)
                      ++..+..++.+...
T Consensus        84 ~~~~~~~la~~~~~   97 (135)
T TIGR02552        84 DPRPYFHAAECLLA   97 (135)
T ss_pred             ChHHHHHHHHHHHH
Confidence            99999999887654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.01  E-value=5.2e-09  Score=96.64  Aligned_cols=117  Identities=16%  Similarity=0.184  Sum_probs=110.6

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      .+|++..+ .+++..++..|+-+++.....++...+|.+...+..+|......|+|.+|+..++++.+++|++.++|..+
T Consensus        62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l  140 (257)
T COG5010          62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL  140 (257)
T ss_pred             cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence            44666677 88999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      |.+|.+.|++++|...|.+++++.|+++...++++...
T Consensus       141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~  178 (257)
T COG5010         141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSL  178 (257)
T ss_pred             HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHH
Confidence            99999999999999999999999999999999998764

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=99.00  E-value=1e-08  Score=87.01  Aligned_cols=111  Identities=19%  Similarity=0.162  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---KAYL  536 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~  536 (580)
                      ....++..|...++.|+|.+|++.|+......|..   ..+...++.+|++.++|++|+..+++-++++|+++   .++|
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            45788999999999999999999999999988764   67899999999999999999999999999999875   4899


Q ss_pred             HHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025          537 RRGTAREMLGY---------------YKEAIEDFSYALVLEPTNKRASLSAD  573 (580)
Q Consensus       537 ~lg~~~~~~g~---------------~~~A~~~~~~al~l~p~~~~~~~~l~  573 (580)
                      ..|++++.+..               ..+|...|++.++..|+...+-....
T Consensus        89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~  140 (142)
T PF13512_consen   89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARK  140 (142)
T ss_pred             HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            99999999887               89999999999999999988765544

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.1e-09  Score=98.96  Aligned_cols=115  Identities=32%  Similarity=0.378  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      ..+..+...|+.+|..++|..|+..|.++|.++|..+.+|.+++.||+++++++.+.+++.++++++|+..+++|.+|.+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~   87 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQW   87 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHH
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHH
Q 008025          542 REMLGYYKEAIEDFSYALVLEP-----TNKRASLSADRLR  576 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~p-----~~~~~~~~l~~l~  576 (580)
                      +.+...|++|+..++++..+..     .-.+....|...+
T Consensus        88 ~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak  127 (284)
T KOG4642|consen   88 LLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK  127 (284)
T ss_pred             HHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            9999999999999999976532     2234555554443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.98  E-value=1.4e-08  Score=95.21  Aligned_cols=111  Identities=19%  Similarity=0.189  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHH
Q 008025          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGT  540 (580)
Q Consensus       467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~  540 (580)
                      .|+.|..+++.|+|.+|...|.+-++..|++   +.++|.||.+++.+|+|++|.+.|..+++-.|+.   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            7889999999999999999999999999986   6899999999999999999999999999998866   578999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +...+|+.++|...|+++++..|+...+......+++
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~~~  260 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVALKA  260 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence            9999999999999999999999999998887776644

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.94  E-value=1.4e-08  Score=116.98  Aligned_cols=121  Identities=19%  Similarity=0.088  Sum_probs=111.7

Q ss_pred             cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      .....|++...++.+|..+.+.|++++|+..|+++++.+|++..++.+++.++...++ .+|++.+++++++.|+++..+
T Consensus       762 ~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~  840 (899)
T TIGR02917       762 WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAIL  840 (899)
T ss_pred             HHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHH
Confidence            3345567788899999999999999999999999999999999999999999999999 889999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      .++|.++..+|++++|.++|+++++++|.++.++..++.+..
T Consensus       841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  882 (899)
T TIGR02917       841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL  882 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence            999999999999999999999999999999999988887654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.94  E-value=9.9e-09  Score=104.16  Aligned_cols=126  Identities=17%  Similarity=0.088  Sum_probs=92.1

Q ss_pred             hccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------------------------------
Q 008025          450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG----------------------------------  495 (580)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p----------------------------------  495 (580)
                      +..+....+.+|++.+++..+|..|.++|.-.+|++++.+.+...|                                  
T Consensus       339 i~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fL  418 (579)
T KOG1125|consen  339 ISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFL  418 (579)
T ss_pred             HHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHH
Confidence            3344455556666777777777777777777777777777764322                                  


Q ss_pred             ---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          496 ---------NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       496 ---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                               .+++++..||.+|+..++|++|+.+|+.||..+|++...|.+||-.+..-.+.++|+..|++|++|.|+..
T Consensus       419 eaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV  498 (579)
T KOG1125|consen  419 EAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV  498 (579)
T ss_pred             HHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee
Confidence                     13566777777778888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHH
Q 008025          567 RASLSADRL  575 (580)
Q Consensus       567 ~~~~~l~~l  575 (580)
                      .++++++.-
T Consensus       499 R~RyNlgIS  507 (579)
T KOG1125|consen  499 RVRYNLGIS  507 (579)
T ss_pred             eeehhhhhh
Confidence            888777754

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=5e-08  Score=89.37  Aligned_cols=125  Identities=20%  Similarity=0.118  Sum_probs=109.9

Q ss_pred             cccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (580)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~  531 (580)
                      .+.....++|.+.-.+...-.+...+|+--+||+.+++.++.-++|.++|..++.+|+..++|++|.-||++.+-+.|.+
T Consensus       108 ~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n  187 (289)
T KOG3060|consen  108 YYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN  187 (289)
T ss_pred             HHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc
Confidence            33445556677777777777788888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          532 VKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       532 ~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      +..+..+|.+++.+|   +++-|.++|.++++++|.+-.+++.+-.+.
T Consensus       188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~  235 (289)
T KOG3060|consen  188 PLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCG  235 (289)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence            999999999999877   788999999999999998877776654443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.90  E-value=4.2e-08  Score=110.38  Aligned_cols=112  Identities=14%  Similarity=-0.026  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      ....+..++..+...|++++|++.++++++..|++..++..+|.++...|++++|++.++++++++|++..+++.+|.++
T Consensus       358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a  437 (765)
T PRK10049        358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA  437 (765)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence            35677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADR  574 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  574 (580)
                      ..++++++|++.++++++..|+++.+...-..
T Consensus       438 l~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~  469 (765)
T PRK10049        438 LDLQEWRQMDVLTDDVVAREPQDPGVQRLARA  469 (765)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999999999999999987765443

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.5e-08  Score=96.10  Aligned_cols=110  Identities=34%  Similarity=0.476  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      +.+.-+...||.||+.++|..|+..|.+.|+..-.+    ...|.|++.|.+.+|+|..|++++.+++.++|++.+++++
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R  158 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR  158 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            467888999999999999999999999999985443    5689999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  571 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  571 (580)
                      -+.|++.++++.+|..+++..++++-+...+...
T Consensus       159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l  192 (390)
T KOG0551|consen  159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKAIEL  192 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            9999999999999998888887776555444433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.89  E-value=1.5e-08  Score=103.10  Aligned_cols=107  Identities=14%  Similarity=0.128  Sum_probs=94.6

Q ss_pred             HHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025          440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA  519 (580)
Q Consensus       440 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  519 (580)
                      .+...+...+...+...+..+|.+...++.+|.++++.|+|++|+..++++++++|++..+|+.+|.+|+.+|+|++|++
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~   91 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA   91 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            33444555555556666677788899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 008025          520 DCTKAINLDKKNVKAYLRRGTAREMLG  546 (580)
Q Consensus       520 ~~~~al~l~p~~~~a~~~lg~~~~~~g  546 (580)
                      +|+++++++|++..++..++.+...+.
T Consensus        92 ~~~~al~l~P~~~~~~~~l~~~~~kl~  118 (356)
T PLN03088         92 ALEKGASLAPGDSRFTKLIKECDEKIA  118 (356)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999988876663

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.88  E-value=1.9e-08  Score=105.15  Aligned_cols=107  Identities=29%  Similarity=0.229  Sum_probs=102.7

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA--DCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~--~~~~al~l~p~~~~a~~~  537 (580)
                      .+..+..|+..|..+..+|++.+|.+.|..++.++|++......+|.++.+.|+..-|..  .+..++++||.++++||.
T Consensus       680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~  759 (799)
T KOG4162|consen  680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYY  759 (799)
T ss_pred             chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHH
Confidence            467788999999999999999999999999999999999999999999999999888888  999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                      +|.++.++|+.++|.++|+.++++++.+|
T Consensus       760 LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  760 LGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             HHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            99999999999999999999999998876

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.88  E-value=4.2e-08  Score=101.96  Aligned_cols=112  Identities=17%  Similarity=0.075  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-VKAYLRRGTAR  542 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-~~a~~~lg~~~  542 (580)
                      ...+..+|..+.+.|++++|+..|+++++.+|++..+++.+|.+|.+.|++++|++.++++++.+|++ ..++..++.+|
T Consensus       180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~  259 (389)
T PRK11788        180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY  259 (389)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence            33566788888999999999999999999999988899999999999999999999999999988876 45678889999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      ...|++++|.+.++++++.+|+.... ..++.+.
T Consensus       260 ~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~  292 (389)
T PRK11788        260 QALGDEAEGLEFLRRALEEYPGADLL-LALAQLL  292 (389)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHH
Confidence            99999999999999999999877544 5555543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.88  E-value=1.7e-08  Score=87.20  Aligned_cols=90  Identities=14%  Similarity=0.072  Sum_probs=84.0

Q ss_pred             HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025          490 AIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  568 (580)
Q Consensus       490 al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  568 (580)
                      ...+. ++.-+..+.+|..++..|++++|++.|+-+..++|.+...|++||.++..+|+|++|+.+|.+++.++|+++..
T Consensus        26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence            44566 77889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhh
Q 008025          569 SLSADRLRKVF  579 (580)
Q Consensus       569 ~~~l~~l~~~~  579 (580)
                      ..+++.+.-++
T Consensus       106 ~~~ag~c~L~l  116 (157)
T PRK15363        106 PWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHHc
Confidence            99999886543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.88  E-value=4.7e-08  Score=97.76  Aligned_cols=125  Identities=18%  Similarity=0.078  Sum_probs=110.1

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  533 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~  533 (580)
                      .......|++...+...+.+++..++.++|++.+++++.++|+....+.++|.+|++.|++++|+..+++.+..+|+++.
T Consensus       330 ~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~  409 (484)
T COG4783         330 QPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPN  409 (484)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCch
Confidence            33455678888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .|..++.+|..+|+-.++...+-....+.-+-..+...+...++.
T Consensus       410 ~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         410 GWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            999999999999888888777777777777766666666665544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.87  E-value=1.1e-08  Score=78.48  Aligned_cols=71  Identities=30%  Similarity=0.424  Sum_probs=50.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          505 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       505 a~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      ..+|...++|++|+++++++++++|+++..|+.+|.++..+|++++|.++|+++++..|++..+......+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            45667777777777777777777777777777777777777777777777777777777777666655543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.86  E-value=6.5e-08  Score=79.22  Aligned_cols=104  Identities=25%  Similarity=0.269  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----VKAYLRR  538 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~l  538 (580)
                      ....+...|..+...|+.+.|++.|.+++.+.|+.+.+|+|++.+|.-+|+.++|+.++++++++.-+.    ..+|..+
T Consensus        42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR  121 (175)
T KOG4555|consen   42 ASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR  121 (175)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            345566678888999999999999999999999999999999999999999999999999999996544    3578999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                      |.+|..+|+-+.|...|+.+-++.....
T Consensus       122 g~lyRl~g~dd~AR~DFe~AA~LGS~FA  149 (175)
T KOG4555|consen  122 GLLYRLLGNDDAARADFEAAAQLGSKFA  149 (175)
T ss_pred             HHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence            9999999999999999999988876543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.86  E-value=6.4e-08  Score=102.97  Aligned_cols=134  Identities=19%  Similarity=0.148  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008025          430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL  509 (580)
Q Consensus       430 ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~  509 (580)
                      +.++..+........+...+.......+.++|....+|+.+|.+|-++|+.++++...-.|-.++|++.+.|..++....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE  218 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            33343333333344555555555566778889999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          510 ESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       510 ~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                      ++|++++|.-+|.+||+.+|.+.+.++.++.+|.++|++..|...|++.+++.|
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            999999999999999999999999999999999999999999999999999999

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=2e-08  Score=101.57  Aligned_cols=127  Identities=20%  Similarity=0.229  Sum_probs=110.1

Q ss_pred             ccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN----GN---NATYYSNRAAAYLESGSFLQAEADCTK  523 (580)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~----p~---~~~~~~~la~~~~~~~~~~~A~~~~~~  523 (580)
                      ..+.+.....|.++-.+.++|...++.+.|.+|+.+|++++..-    ++   -...+.|||-+|.+++.|++|+.+|++
T Consensus       401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~  480 (611)
T KOG1173|consen  401 KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK  480 (611)
T ss_pred             HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence            33344445567888899999999999999999999999999432    22   234589999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       524 al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +|.+.|.++.++...|.+|..+|+++.|+++|.+++-+.|+|.-+...|+...+
T Consensus       481 aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  481 ALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888887776543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.84  E-value=5.7e-08  Score=100.93  Aligned_cols=115  Identities=12%  Similarity=-0.012  Sum_probs=102.3

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      ..+.....++.+|..+.+.|++++|++.|+++++.+|.+ ...+..++.+|.+.|++++|++.++++++.+|+... +..
T Consensus       209 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~  287 (389)
T PRK11788        209 ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLA  287 (389)
T ss_pred             HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHH
Confidence            345667788999999999999999999999999998876 467889999999999999999999999999998754 488


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR  574 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  574 (580)
                      ++.++...|++++|++.++++++.+|++......+..
T Consensus       288 la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~  324 (389)
T PRK11788        288 LAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDY  324 (389)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            9999999999999999999999999998877654443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.83  E-value=7.1e-08  Score=111.09  Aligned_cols=118  Identities=23%  Similarity=0.225  Sum_probs=88.7

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      ..+.....++.++..+...|++++|+..++++++..|++...|+.++.+|...|++++|++.|+++++.+|++..+++.+
T Consensus       562 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  641 (899)
T TIGR02917       562 LNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL  641 (899)
T ss_pred             hCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            34455566677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      +.++...|++++|.+.|+++++.+|++..++..+..+.
T Consensus       642 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  679 (899)
T TIGR02917       642 ADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL  679 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            77777777777777777777777777777766665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.82  E-value=1.3e-07  Score=100.69  Aligned_cols=118  Identities=19%  Similarity=0.168  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      ...+.+...||.++..|++++|++.+..+++++|.+..+|+.||.+|.++|+.+++.+..-.|-.++|++...|..++..
T Consensus       137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladl  216 (895)
T KOG2076|consen  137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADL  216 (895)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ..++|++++|.-||.+|++++|.+.........+.+.+
T Consensus       217 s~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~  254 (895)
T KOG2076|consen  217 SEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT  254 (895)
T ss_pred             HHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence            99999999999999999999999988888877777653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.82  E-value=1.1e-07  Score=79.68  Aligned_cols=96  Identities=21%  Similarity=0.038  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK---NVKAYLRR  538 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~---~~~a~~~l  538 (580)
                      .++|+.|..+-..|+.++|+..|+++++.....   ..++..+|.++..+|++++|+..+++++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467999999999999999999999999975443   678999999999999999999999999999898   88888999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q 008025          539 GTAREMLGYYKEAIEDFSYALV  560 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~  560 (580)
                      +.++...|++++|++.+..++.
T Consensus        82 Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988775

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.81  E-value=1.9e-07  Score=85.68  Aligned_cols=137  Identities=13%  Similarity=0.091  Sum_probs=117.2

Q ss_pred             HHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025          440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA  519 (580)
Q Consensus       440 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  519 (580)
                      ++.......+...+.+....-|...+.....|..+-..|+|++|+++|+..++-+|.+...+-..-.+...+|+-.+|++
T Consensus        62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk  141 (289)
T KOG3060|consen   62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIK  141 (289)
T ss_pred             HHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHH
Confidence            33433344444343443344467777888899999999999999999999999999999888888888889999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       520 ~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      .+.+.++..+++.++|..++.+|...|+|++|.-|+++.+-+.|-++.....++.++
T Consensus       142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~  198 (289)
T KOG3060|consen  142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVL  198 (289)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998888887764

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.81  E-value=1.4e-08  Score=76.55  Aligned_cols=62  Identities=23%  Similarity=0.249  Sum_probs=29.6

Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       476 ~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      ++|+|++|++.|+++++.+|++..+++.++.||++.|++++|.+.+++++..+|+++..+..
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l   64 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL   64 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            44444555555555555555444444455555555555555555555544444444443333

...

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.80  E-value=1.6e-07  Score=89.39  Aligned_cols=114  Identities=19%  Similarity=0.225  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      ..+......++..|++..+|+..++.++..|-++..+..++.||...|+...|+.++..+-++..++.+++|..+.+++.
T Consensus       156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~  235 (504)
T KOG0624|consen  156 WVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT  235 (504)
T ss_pred             HHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence            34455666778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          545 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       545 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .|+.+.++.-.+.+++++|+....+-.+..+++.
T Consensus       236 vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv  269 (504)
T KOG0624|consen  236 VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKV  269 (504)
T ss_pred             hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHH
Confidence            9999999999999999999999988888777664

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.80  E-value=1.7e-08  Score=76.17  Aligned_cols=68  Identities=24%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       508 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      +++.|+|++|++.|+++++.+|++..+++.++.+|.+.|++++|.+.++++++.+|+++..+..+++|
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            36789999999999999999999999999999999999999999999999999999999888887764

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.79  E-value=5.9e-08  Score=84.93  Aligned_cols=98  Identities=22%  Similarity=0.210  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC--
Q 008025          480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS----------FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY--  547 (580)
Q Consensus       480 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~--  547 (580)
                      |++|.+.++.....+|.+++.+++-|.+++++.+          +++|+.-|+++|.++|+...+++++|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            6789999999999999999999999999987744          5678899999999999999999999999987754  


Q ss_pred             ---------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          548 ---------YKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       548 ---------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                               |++|.++|+++...+|+|...+..|....+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence                     899999999999999999988888876654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.78  E-value=3.8e-08  Score=87.84  Aligned_cols=108  Identities=19%  Similarity=0.162  Sum_probs=103.8

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      ...+..++++|..|-..|-++-|.-.|.+++.+.|+.+++++.+|..+...|+|+.|.+.|+-.+++||.+-.++.|+|+
T Consensus        62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi  141 (297)
T COG4785          62 EERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI  141 (297)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKRA  568 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~  568 (580)
                      +++.-|+|+-|.+.+.+-.+-+|+||.-
T Consensus       142 ~~YY~gR~~LAq~d~~~fYQ~D~~DPfR  169 (297)
T COG4785         142 ALYYGGRYKLAQDDLLAFYQDDPNDPFR  169 (297)
T ss_pred             eeeecCchHhhHHHHHHHHhcCCCChHH
Confidence            9999999999999999999999999843

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.78  E-value=5.4e-08  Score=97.80  Aligned_cols=71  Identities=20%  Similarity=0.119  Sum_probs=67.2

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      ..+|+.+..++++|..+++.|+|++|+..|+++++++|++..+   |+|+|.+|.++|++++|++++++++++.
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4568899999999999999999999999999999999999865   9999999999999999999999999984

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.77  E-value=3.6e-08  Score=96.78  Aligned_cols=117  Identities=21%  Similarity=0.158  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      .-++.++.+.|+..|.+|++++|.+.|.+++.-+.....++++.|..+..+|+.++|+++|-+...+--++.+.++.++.
T Consensus       487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qian  566 (840)
T KOG2003|consen  487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIAN  566 (840)
T ss_pred             ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34566778899999999999999999999999988889999999999999999999999999988888899999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +|..+.+..+|++++-++..+-|+++.++..|+.+..
T Consensus       567 iye~led~aqaie~~~q~~slip~dp~ilskl~dlyd  603 (840)
T KOG2003|consen  567 IYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD  603 (840)
T ss_pred             HHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence            9999999999999999999999999999999998864

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.77  E-value=3.2e-08  Score=99.37  Aligned_cols=69  Identities=19%  Similarity=0.133  Sum_probs=66.7

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA---YLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       493 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a---~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      .+|+++.+|+++|.+|+++|+|++|+.+|+++|+++|++.++   |||+|.+|..+|++++|+++|++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            579999999999999999999999999999999999999865   999999999999999999999999998

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.76  E-value=4.4e-08  Score=75.07  Aligned_cols=70  Identities=17%  Similarity=0.307  Sum_probs=65.5

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       471 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      ...++++++|++|++.++++++++|+++..|..+|.+|.++|++++|+++++++++.+|++..+...++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            5688999999999999999999999999999999999999999999999999999999999888766553

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.75  E-value=1.3e-07  Score=83.31  Aligned_cols=97  Identities=21%  Similarity=0.130  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      -...+.+.+|..++..|+|++|+..|+++++..|+.   ..+.+.++.+++.+|+|++|+..++. +.-.+-.+.++..+
T Consensus        46 ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~  124 (145)
T PF09976_consen   46 YAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELL  124 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHH
Confidence            346778889999999999999999999999987664   46888999999999999999999976 34444556788889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q 008025          539 GTAREMLGYYKEAIEDFSYAL  559 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al  559 (580)
                      |.+|...|++++|++.|++++
T Consensus       125 Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  125 GDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHCCCHHHHHHHHHHhC
Confidence            999999999999999999875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.75  E-value=3e-07  Score=87.99  Aligned_cols=113  Identities=18%  Similarity=0.162  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY  535 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~  535 (580)
                      .....++..|..+++.|+|++|++.|++++...|....+   .+.+|.+|+++++|++|+..+++.++++|++   ..++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            356678999999999999999999999999999998654   4899999999999999999999999999877   4589


Q ss_pred             HHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025          536 LRRGTAREMLG---------------Y---YKEAIEDFSYALVLEPTNKRASLSADR  574 (580)
Q Consensus       536 ~~lg~~~~~~g---------------~---~~~A~~~~~~al~l~p~~~~~~~~l~~  574 (580)
                      |.+|.++..++               +   ..+|++.|++.++..|+...+.....+
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r  166 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR  166 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence            99999875554               1   357889999999999998755554443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.72  E-value=2.8e-07  Score=86.05  Aligned_cols=113  Identities=22%  Similarity=0.208  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---KAY  535 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~  535 (580)
                      .....++..|..+++.|+|.+|++.|++.+...|..   ..+.+.+|.++++.++|.+|+..+++.++..|+++   .++
T Consensus         3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~   82 (203)
T PF13525_consen    3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL   82 (203)
T ss_dssp             --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence            346788999999999999999999999999998875   68899999999999999999999999999999864   589


Q ss_pred             HHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025          536 LRRGTAREMLG-----------YYKEAIEDFSYALVLEPTNKRASLSADR  574 (580)
Q Consensus       536 ~~lg~~~~~~g-----------~~~~A~~~~~~al~l~p~~~~~~~~l~~  574 (580)
                      +.+|.+++.+.           ...+|+..|+..++..|+...+......
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~  132 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR  132 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence            99999987653           3468999999999999998765544333

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.71  E-value=2.3e-07  Score=99.54  Aligned_cols=119  Identities=17%  Similarity=0.169  Sum_probs=104.6

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      .+..++.+|++|..+..+|+|++|..+|.++++.++++ .-.++.+|+.|++.|+++.|..+|+++++..|++.+...-+
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL  382 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL  382 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            35567788999999999999999999999999998887 67788999999999999999999999999999999999999


Q ss_pred             HHHHHHcC----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          539 GTAREMLG----YYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       539 g~~~~~~g----~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      |.+|...+    ..+.|...+.++++..|.|.++|..++++..+
T Consensus       383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence            99988775    67889999999999999999999998887653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.69  E-value=2e-07  Score=100.03  Aligned_cols=122  Identities=19%  Similarity=0.157  Sum_probs=111.3

Q ss_pred             cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Q 008025          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-  531 (580)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-  531 (580)
                      .-..++.++.++..+++.+|-.|+|..+...+..++...-+   -++.+|++|.+|..+|+|++|.++|.++++.++++ 
T Consensus       262 ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~  341 (1018)
T KOG2002|consen  262 AYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNF  341 (1018)
T ss_pred             HHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCc
Confidence            33456788899999999999999999999999999987643   35679999999999999999999999999999998 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      .-.++.+|..|...|+++.|+.+|+++++..|++......|+.+..
T Consensus       342 ~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya  387 (1018)
T KOG2002|consen  342 VLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA  387 (1018)
T ss_pred             cccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence            7789999999999999999999999999999999999999998764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.69  E-value=2.6e-07  Score=102.69  Aligned_cols=125  Identities=12%  Similarity=-0.037  Sum_probs=88.7

Q ss_pred             hHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK  523 (580)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  523 (580)
                      .+...+...+.+....+|........+...+...|++++|+.++++++...|........+|.+|..+|+|++|++.|++
T Consensus        48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~k  127 (822)
T PRK14574         48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQS  127 (822)
T ss_pred             CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            33345555555666666666433447777777778888888888888743344444444457788888888888888888


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025          524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  568 (580)
Q Consensus       524 al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  568 (580)
                      +++.+|+++.+++.++.++...++.++|++.++++.+.+|++...
T Consensus       128 aL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~  172 (822)
T PRK14574        128 SLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY  172 (822)
T ss_pred             HHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence            888888888888877788888888888888888888888875554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.68  E-value=4.3e-07  Score=89.34  Aligned_cols=101  Identities=20%  Similarity=0.191  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      ....+.+++.++.+.++|.+|+...+++|.++|+|..++|.+|.++..+++|+.|+.+|+++++++|+|-.+...+..+.
T Consensus       256 k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  256 KLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK  335 (397)
T ss_pred             HHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHcCCHHHH-HHHHHHHHhhCC
Q 008025          543 EMLGYYKEA-IEDFSYALVLEP  563 (580)
Q Consensus       543 ~~~g~~~~A-~~~~~~al~l~p  563 (580)
                      .+..++.+. .+.|.+.+..-+
T Consensus       336 ~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhhccc
Confidence            877766655 777877776544

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.67  E-value=3.6e-08  Score=97.45  Aligned_cols=116  Identities=18%  Similarity=0.105  Sum_probs=84.2

Q ss_pred             HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (580)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  525 (580)
                      ...+...+.+....+|++......++..+...|+++++.+.+.+..+..|.++..+..+|.+|..+|++++|+.+|++++
T Consensus       162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~  241 (280)
T PF13429_consen  162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKAL  241 (280)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccc
Confidence            34444555666777889999999999999999999999999998888888888999999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          526 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       526 ~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      +.+|+++..+..+|.++...|++++|.+.++++++.
T Consensus       242 ~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  242 KLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHSTT-HHHHHHHHHHHT------------------
T ss_pred             cccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999998764

>PRK11906 transcriptional regulator; Provisional

Probab=98.67  E-value=5.3e-07  Score=90.87  Aligned_cols=114  Identities=14%  Similarity=-0.042  Sum_probs=101.5

Q ss_pred             hhchHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          458 FNQKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~---------g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      ..+|..+.+|..++.+++..         .+-.+|.+.-+++++++|.|+.++..+|.++...++++.|+..+++++.++
T Consensus       289 ~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~  368 (458)
T PRK11906        289 DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS  368 (458)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence            45577788888888887654         345789999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025          529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  571 (580)
Q Consensus       529 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  571 (580)
                      |+.+.+|+..|.++...|+.++|.+.++++++++|....+-..
T Consensus       369 Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~  411 (458)
T PRK11906        369 TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVI  411 (458)
T ss_pred             CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHH
Confidence            9999999999999999999999999999999999986655443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=9.1e-08  Score=93.39  Aligned_cols=118  Identities=25%  Similarity=0.327  Sum_probs=106.3

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------------TYYSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~------------~~~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      ++.+.++++-.|.+++...+.+.|+.+|+++|.++|++.            ..+-..|+-.++.|+|.+|.++|.++|.+
T Consensus       199 d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i  278 (486)
T KOG0550|consen  199 DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI  278 (486)
T ss_pred             ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence            357788999999999999999999999999999999863            46778899999999999999999999999


Q ss_pred             CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          528 DKKN----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       528 ~p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +|++    +..|++++.+..++|+.++|+..++.++++++.-..++...+++..
T Consensus       279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l  332 (486)
T KOG0550|consen  279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL  332 (486)
T ss_pred             CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence            9976    5679999999999999999999999999999998887777666654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.64  E-value=2.6e-07  Score=83.66  Aligned_cols=106  Identities=16%  Similarity=0.155  Sum_probs=91.7

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcC
Q 008025          472 NQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLG  546 (580)
Q Consensus       472 ~~~~~~g~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~g  546 (580)
                      +-+|-.++|..+.+.+.+.++.++.+  ..+++++|.++..++++++|+..|++++++.|+.   ..+++++|.++...|
T Consensus         7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g   86 (168)
T CHL00033          7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG   86 (168)
T ss_pred             cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence            34556677888888887776666665  6778999999999999999999999999997763   458999999999999


Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          547 YYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       547 ~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++++|+++|+++++++|.....+..++.+..
T Consensus        87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         87 EHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            9999999999999999999999888887765

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.64  E-value=3.9e-07  Score=96.52  Aligned_cols=119  Identities=20%  Similarity=0.141  Sum_probs=97.8

Q ss_pred             hhhccccccchhchHHHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Q 008025          448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKD--------KQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQA  517 (580)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------g~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A  517 (580)
                      .+...+.+....+|+.+.++-.++.++...        .+..++.+...+++.+  ++.++.+|..+|..+...|++++|
T Consensus       360 ~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A  439 (517)
T PRK10153        360 KASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEA  439 (517)
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHH
Confidence            444445566667788888887777766543        2345666667776664  777888999999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025          518 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  567 (580)
Q Consensus       518 ~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  567 (580)
                      ...++++++++| +..+|..+|.++...|++++|.+.|++|+.++|.++.
T Consensus       440 ~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        440 YQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            999999999999 5889999999999999999999999999999999874

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.62  E-value=6.5e-08  Score=91.48  Aligned_cols=114  Identities=13%  Similarity=0.152  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK---KNVKAYLRR  538 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p---~~~~a~~~l  538 (580)
                      .+.++.--.|.-||-.++.+-|+.+|++.+++.-.+++.+.|+|.|.+.-++++-++..+++++..-.   .-.+.|||+
T Consensus       322 ~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNl  401 (478)
T KOG1129|consen  322 INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNL  401 (478)
T ss_pred             ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcc
Confidence            33333333444444444455555555555555444445555555555555555555555555444422   113345555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      |.+....|++.-|..+|+-++.-++++.+++++|+.+
T Consensus       402 g~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL  438 (478)
T KOG1129|consen  402 GFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL  438 (478)
T ss_pred             ceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence            5555555555555555555555555555555544443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=2.2e-07  Score=96.81  Aligned_cols=111  Identities=16%  Similarity=0.069  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      ++.+.+.+|...+++++|.++.++++..++++|-....|+.+|.|+.++++++.|.++|.+++.++|++..+|+|++.+|
T Consensus       484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ay  563 (777)
T KOG1128|consen  484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAY  563 (777)
T ss_pred             hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHH
Confidence            34455666677777888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASLSAD  573 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  573 (580)
                      ...++..+|...++++++-+-++...|.+..
T Consensus       564 i~~~~k~ra~~~l~EAlKcn~~~w~iWENym  594 (777)
T KOG1128|consen  564 IRLKKKKRAFRKLKEALKCNYQHWQIWENYM  594 (777)
T ss_pred             HHHhhhHHHHHHHHHHhhcCCCCCeeeechh
Confidence            8888888888888888888766666665543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.59  E-value=5.2e-07  Score=92.49  Aligned_cols=104  Identities=13%  Similarity=-0.019  Sum_probs=94.6

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----HHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV----KAY  535 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~----~a~  535 (580)
                      .+.....+..+|..+..+|++++|+..++++++++|++..++..+|.+|++.|++++|+++++++++..|...    ..|
T Consensus       110 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~  189 (355)
T cd05804         110 NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNW  189 (355)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHH
Confidence            4566677788999999999999999999999999999999999999999999999999999999999987433    356


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                      +.++.++..+|++++|+..|++++...|
T Consensus       190 ~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         190 WHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            7899999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.58  E-value=8.4e-07  Score=98.73  Aligned_cols=116  Identities=14%  Similarity=0.115  Sum_probs=100.1

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      +.....+..+|..+..+|+|++|++.|+++++.+|+++.++..++.+|.+.+++++|++.++++++.+|++... ..++.
T Consensus        99 n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~lay  177 (822)
T PRK14574         99 NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSY  177 (822)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHH
Confidence            34455666678899999999999999999999999999999999999999999999999999999999985554 55566


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++..++++.+|++.++++++++|++.+++..+-.+..
T Consensus       178 L~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~  214 (822)
T PRK14574        178 LNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQ  214 (822)
T ss_pred             HHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            6666788878999999999999999999877765543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.56  E-value=2.7e-06  Score=80.83  Aligned_cols=111  Identities=12%  Similarity=0.047  Sum_probs=95.7

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-VKAYLR  537 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-~~a~~~  537 (580)
                      .+.+.+..+++++..+....+.+.|+..+.|+++.+|++..+-..+|.+++..|+|++|++.++++++.||++ ++..-.
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~  254 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM  254 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence            3456678888999999999999999999999999999999999999999999999999999999999999987 457778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRAS  569 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  569 (580)
                      +-.||.++|+.++....+.++.+..++..-..
T Consensus       255 L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l  286 (389)
T COG2956         255 LYECYAQLGKPAEGLNFLRRAMETNTGADAEL  286 (389)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHccCCccHHH
Confidence            88999999999999999999998877654433

>TIGR00540 hemY_coli hemY protein

Probab=98.55  E-value=1.3e-06  Score=91.18  Aligned_cols=117  Identities=11%  Similarity=-0.017  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY--SNRAAAYLESGSFLQAEADCTKAINLDKKNV--KAYL  536 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~--~~la~~~~~~~~~~~A~~~~~~al~l~p~~~--~a~~  536 (580)
                      +++...+..++..+...|++++|++.++++++..|++....  ..+...++..++.+++++.++++++.+|+++  ..+.
T Consensus       260 ~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~  339 (409)
T TIGR00540       260 RHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINR  339 (409)
T ss_pred             hCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHH
Confidence            35788899999999999999999999999999999987532  3344444556889999999999999999999  8888


Q ss_pred             HHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHhh
Q 008025          537 RRGTAREMLGYYKEAIEDFS--YALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       537 ~lg~~~~~~g~~~~A~~~~~--~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .+|.++++.|++++|+++|+  ++++.+|++.... .++.+...
T Consensus       340 sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~  382 (409)
T TIGR00540       340 ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQ  382 (409)
T ss_pred             HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHH
Confidence            99999999999999999999  6888889877644 77776543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.54  E-value=6.2e-07  Score=92.36  Aligned_cols=112  Identities=17%  Similarity=0.124  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~  545 (580)
                      .++..+...+..++|.+.++..++.++..|++.+.+...|..+..+|+-++|..+...+++.|+.+.-.|.-+|+++...
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          546 GYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       546 g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++|++|++||+.|+.++|+|...+.-+.-+..
T Consensus        89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~  120 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQI  120 (700)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            55555555555555555555555555544433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.53  E-value=5e-06  Score=79.03  Aligned_cols=121  Identities=13%  Similarity=0.064  Sum_probs=92.0

Q ss_pred             hccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      .....+....+++...+-..+|+++..+|+|++|++.++.+++.+|+. +.+...|..||.++|+.++.+.++.++.+.+
T Consensus       200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            334445556677777788888888888888888888888888888875 5677788888888888888888888888877


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025          529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  571 (580)
Q Consensus       529 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  571 (580)
                      ++ ..+...++..-....-.++|..++.+-+...|+-...+..
T Consensus       280 ~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl  321 (389)
T COG2956         280 TG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRL  321 (389)
T ss_pred             CC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHH
Confidence            63 4555666677777777788888888888888875555443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=1.3e-06  Score=83.13  Aligned_cols=97  Identities=21%  Similarity=0.116  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 008025          480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG---YYKEAIEDFS  556 (580)
Q Consensus       480 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~  556 (580)
                      .++-+..++.-++.+|+|.+-|..||.+|+.++++..|...|.+++++.|+|++.+..+|.+++...   +-.++.+.|+
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            4456677788899999999999999999999999999999999999999999999999999988664   5789999999


Q ss_pred             HHHhhCCCCHHHHHHHHHHH
Q 008025          557 YALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       557 ~al~l~p~~~~~~~~l~~l~  576 (580)
                      ++++++|+|..+...|+.-.
T Consensus       218 ~al~~D~~~iral~lLA~~a  237 (287)
T COG4235         218 QALALDPANIRALSLLAFAA  237 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHH
Confidence            99999999999999988653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.52  E-value=3.4e-07  Score=86.73  Aligned_cols=127  Identities=10%  Similarity=0.010  Sum_probs=114.1

Q ss_pred             hhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      +...+.+..+.-|.+...+...+.++-.++++++|+++|+.+++++|.+.++....|.-|+--++.+-|+.+|++.+++.
T Consensus       275 AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG  354 (478)
T KOG1129|consen  275 ALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG  354 (478)
T ss_pred             HHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence            33444555666788888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHH
Q 008025          529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP---TNKRASLSADRL  575 (580)
Q Consensus       529 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~~l~~l  575 (580)
                      -.+++.+.|+|.|.+..++++-++.+|++++...-   .-.++|++++.+
T Consensus       355 ~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v  404 (478)
T KOG1129|consen  355 AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV  404 (478)
T ss_pred             CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence            99999999999999999999999999999998844   346889888765

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.50  E-value=1.3e-07  Score=73.41  Aligned_cols=63  Identities=29%  Similarity=0.385  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLD-------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      .+++++|.+|..+|+|++|+++|++++++.       |.-..+++++|.++..+|++++|++++++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            344555555555555555555555555431       111334555555555555555555555555543

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.49  E-value=3.6e-07  Score=70.97  Aligned_cols=68  Identities=18%  Similarity=0.302  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---G----NNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~---p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      |..+..+.++|.++..+|+|++|+++|++++++.   +    .-..+++++|.+|..+|++++|++++++++++.
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            5677899999999999999999999999999762   1    236789999999999999999999999999864

...

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.47  E-value=1.6e-06  Score=95.68  Aligned_cols=115  Identities=10%  Similarity=-0.062  Sum_probs=73.3

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-------  532 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~-------  532 (580)
                      .+.+..++..+...+...+++++|++.++.+++..|+...+|+.+|.+|++.+++.++.-.  +++...+.+.       
T Consensus        27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH  104 (906)
T ss_pred             CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence            4556666666666666677777777777777777777666666666666666655544433  4444433333       


Q ss_pred             ------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          533 ------------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       533 ------------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                                  .+++.+|.||.++|++++|.+.|+++++++|+|+.++++++...
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~  160 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY  160 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence                        56666677776777777777777777777776666666666543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.47  E-value=2.6e-06  Score=86.42  Aligned_cols=105  Identities=18%  Similarity=0.176  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      +....++..++..++..+|++.++++++..|.+...+...+..+++.++++.|++.+++++++.|++.+.|+.|+.+|..
T Consensus       201 ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~  280 (395)
T PF09295_consen  201 EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ  280 (395)
T ss_pred             cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence            35566899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025          545 LGYYKEAIEDFSYALVLEPTNKRAS  569 (580)
Q Consensus       545 ~g~~~~A~~~~~~al~l~p~~~~~~  569 (580)
                      +|++++|+..++.+=....++.+..
T Consensus       281 ~~d~e~ALlaLNs~Pm~~~~~k~~~  305 (395)
T PF09295_consen  281 LGDFENALLALNSCPMLTYKDKYKL  305 (395)
T ss_pred             cCCHHHHHHHHhcCcCCCCccchhh
Confidence            9999999998885544444444443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.46  E-value=1.4e-06  Score=79.22  Aligned_cols=84  Identities=18%  Similarity=0.206  Sum_probs=75.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025          495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  571 (580)
Q Consensus       495 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  571 (580)
                      +....+++++|..+...|++++|+.+|++++++.|+.   ..+++++|.++..+|++++|+++++++++++|++...+..
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3457789999999999999999999999999987764   4689999999999999999999999999999999999888


Q ss_pred             HHHHHhh
Q 008025          572 ADRLRKV  578 (580)
Q Consensus       572 l~~l~~~  578 (580)
                      ++.+...
T Consensus       112 lg~~~~~  118 (172)
T PRK02603        112 IAVIYHK  118 (172)
T ss_pred             HHHHHHH
Confidence            8877543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=9.8e-07  Score=89.61  Aligned_cols=118  Identities=16%  Similarity=0.027  Sum_probs=110.2

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      ...|+.+-.|+..|..|+..+++.+|.++|.|+..++|....+|...|..+...++.++|+.+|..|-++-|......+.
T Consensus       306 ~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY  385 (611)
T KOG1173|consen  306 DLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY  385 (611)
T ss_pred             HhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH
Confidence            34578888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      +|.=|..+++++-|.+.|.+|+.+.|+|+-++..++-+
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvv  423 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVV  423 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhhe
Confidence            99999999999999999999999999999988887754

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.44  E-value=1.8e-06  Score=68.69  Aligned_cols=78  Identities=32%  Similarity=0.399  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +++++|.++...+++++|++.++++++..|++..+++.+|.++...+++++|.++|++++++.|.+...+..++.+..
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999999999999999988877776543

>PRK11906 transcriptional regulator; Provisional

Probab=98.44  E-value=1.1e-05  Score=81.66  Aligned_cols=111  Identities=11%  Similarity=-0.003  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHccC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCC
Q 008025          466 IAKEKGNQAYKDKQ---WLKAISFYTEAI---KLNGNNATYYSNRAAAYLES---------GSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       466 ~~~~~g~~~~~~g~---~~~Ai~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~l~p~  530 (580)
                      .++.+|..++..+.   .+.|+..|.+++   +++|+...+|..++.||+..         .+-.+|.+..+++++++|+
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            45778888876654   578999999999   99999999999999999866         2456899999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      ++.++..+|.++...++++.|...|++++.++|+.+.++...+.+.
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~  382 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH  382 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988754

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.43  E-value=3.9e-06  Score=87.55  Aligned_cols=119  Identities=18%  Similarity=0.195  Sum_probs=97.1

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD---  528 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~---  528 (580)
                      .+.-......+|..|...++|.+|+..|++++..        +|.-..++.+||.+|++.|+|++|..+|++|+++.   
T Consensus       237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~  316 (508)
T KOG1840|consen  237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL  316 (508)
T ss_pred             CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh
Confidence            4555666677999999999999999999999986        34446789999999999999999999999999984   


Q ss_pred             -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CC---HHHHHHHHHHHhh
Q 008025          529 -----KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP-----TN---KRASLSADRLRKV  578 (580)
Q Consensus       529 -----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~~---~~~~~~l~~l~~~  578 (580)
                           |.-...+.+++.++..++++++|+.++++++++.-     ++   +..+.+++.+...
T Consensus       317 ~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~  379 (508)
T KOG1840|consen  317 LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK  379 (508)
T ss_pred             hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence                 23355788899999999999999999999998743     23   3455555555443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.42  E-value=6.5e-06  Score=87.38  Aligned_cols=115  Identities=13%  Similarity=0.046  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHc--CC
Q 008025          463 SAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--------SFLQAEADCTKAINL--DK  529 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~l--~p  529 (580)
                      .+..++.+|..++..++   +.+|+.+|+++++++|+++.+|..++.+|....        +..++.+..++++.+  +|
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~  417 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN  417 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence            45566778988887655   889999999999999999999999999886642        345667777777774  78


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ..+.+|.-+|..+...|++++|...++++++++| +..++..++.+...
T Consensus       418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~  465 (517)
T PRK10153        418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL  465 (517)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            8889999999999999999999999999999999 57899998877543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.40  E-value=3.3e-06  Score=71.25  Aligned_cols=73  Identities=14%  Similarity=0.082  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      ....++.+|.++++.|++++|+..|++++..+|++   ..+++.+|.++.+++++++|++.++++++..|++..+.
T Consensus        38 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        38 APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            36788999999999999999999999999998885   67899999999999999999999999999999987654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.39  E-value=4.2e-06  Score=88.04  Aligned_cols=116  Identities=22%  Similarity=0.102  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~  543 (580)
                      ...|...+..+.+.++-++|..++.++-..+|..+..|+.+|.++...|++.+|.+.|..++.+||++......+|.++.
T Consensus       650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll  729 (799)
T KOG4162|consen  650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL  729 (799)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            45667788888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          544 MLGYYKEAIE--DFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       544 ~~g~~~~A~~--~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      +.|+..-|.+  .+..+++++|.++++|++++.+.++.
T Consensus       730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~  767 (799)
T KOG4162|consen  730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL  767 (799)
T ss_pred             HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence            9999888888  99999999999999999999998764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=4.8e-06  Score=81.49  Aligned_cols=126  Identities=17%  Similarity=0.124  Sum_probs=101.2

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-----------------
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ-----------------  516 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-----------------  516 (580)
                      .+.+..++++.+.+...|+.+.+.++.++|+-.|+.+..+.|.+.+.|..|-.+|+..+++++                 
T Consensus       324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~  403 (564)
T KOG1174|consen  324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR  403 (564)
T ss_pred             HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence            344556678888999999999999999999999999999999998888888888887776554                 


Q ss_pred             -------------------HHHHHHHHHHcCCCCHH---------------------------------HHHHHHHHHHH
Q 008025          517 -------------------AEADCTKAINLDKKNVK---------------------------------AYLRRGTAREM  544 (580)
Q Consensus       517 -------------------A~~~~~~al~l~p~~~~---------------------------------a~~~lg~~~~~  544 (580)
                                         |.++++++++++|++..                                 .+..+|..+..
T Consensus       404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A  483 (564)
T KOG1174|consen  404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRA  483 (564)
T ss_pred             hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence                               44455555555665432                                 45667778888


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          545 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       545 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      .+.+++|..+|..++.++|++...+..+..+++..
T Consensus       484 ~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~  518 (564)
T KOG1174|consen  484 QNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSD  518 (564)
T ss_pred             hhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhcc
Confidence            88899999999999999999999999999988754

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.36  E-value=6e-06  Score=84.58  Aligned_cols=102  Identities=19%  Similarity=0.135  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------------------------------------HHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------------------------------------TYYSNRAAA  507 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-------------------------------------~~~~~la~~  507 (580)
                      +..+..+..++..|++++|++.++++++.+|++.                                     ..+..+|.+
T Consensus        44 e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~  123 (355)
T cd05804          44 ERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG  123 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH
Confidence            3344455556666666666666666555555443                                     344567778


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       508 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                      +..+|++++|++.++++++++|++..++..+|.++++.|++++|+++++++++..|.++
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~  182 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS  182 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence            89999999999999999999999999999999999999999999999999999987544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.36  E-value=5.4e-06  Score=86.49  Aligned_cols=105  Identities=20%  Similarity=0.187  Sum_probs=92.7

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--------NNATYYSNRAAAYLESGSFLQAEADCTKAINLD-  528 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-  528 (580)
                      .+++.-+..+.+++..|.+.|+|++|..++++++++..        .-...+.+++.++..++++++|..++++++++. 
T Consensus       277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~  356 (508)
T KOG1840|consen  277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL  356 (508)
T ss_pred             CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            35678889999999999999999999999999998732        235678899999999999999999999999983 


Q ss_pred             -------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          529 -------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       529 -------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                             +.-+..+.++|.+|+.+|+|++|.+.|++++++.
T Consensus       357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence                   2336789999999999999999999999999885

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.36  E-value=5.7e-06  Score=85.35  Aligned_cols=121  Identities=15%  Similarity=0.053  Sum_probs=96.9

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      +.+|+.-+.|+..-...+.+.+|+.|...|.++....|. ...|+.-+.....+++.++|++.++++++..|++++.|+.
T Consensus       612 ~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lm  690 (913)
T KOG0495|consen  612 EANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLM  690 (913)
T ss_pred             HhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHH
Confidence            345555566666666666666777777777776665554 3667777777788889999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      +|.++.++++.+.|.+.|.+.++..|.....|..|..+..+.
T Consensus       691 lGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~  732 (913)
T KOG0495|consen  691 LGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD  732 (913)
T ss_pred             HhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998887654

>TIGR00540 hemY_coli hemY protein

Probab=98.34  E-value=1.6e-05  Score=83.08  Aligned_cols=110  Identities=12%  Similarity=0.041  Sum_probs=84.7

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      .+.....+...|..+.++|++++|.++|.++.+..|++. .+...++.+++..|++++|.+.+++.++.+|+++.++..+
T Consensus       114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll  193 (409)
T TIGR00540       114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLA  193 (409)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            344445566678888888888888888888888877764 4555568888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRAS  569 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  569 (580)
                      +.++...|++++|.+.+++.++....++...
T Consensus       194 ~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~  224 (409)
T TIGR00540       194 EEAYIRSGAWQALDDIIDNMAKAGLFDDEEF  224 (409)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence            8888888888888888888887755544433

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.33  E-value=1.2e-05  Score=83.52  Aligned_cols=115  Identities=11%  Similarity=0.000  Sum_probs=87.2

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      ...+++.......+..+...|+.++|.+.++++++. +.+.......+.+  ..++++++++.+++.++.+|+++..++.
T Consensus       257 ~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~  333 (398)
T PRK10747        257 RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWST  333 (398)
T ss_pred             HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHH
Confidence            344567778888888888899999999998888884 4444444333333  3488888888888888888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      +|.++...+++++|+++|+++++++|++... ..++.+.
T Consensus       334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~-~~La~~~  371 (398)
T PRK10747        334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDY-AWLADAL  371 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH-HHHHHHH
Confidence            8888888888888888888888888887652 2444443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.32  E-value=3e-05  Score=68.25  Aligned_cols=115  Identities=22%  Similarity=0.082  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAY  535 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~  535 (580)
                      ..+...+......+..+++..+...+++.++.+|+.   ..+.+.+|.+++..|++++|.+.|+++++..|+.   ..+.
T Consensus         9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~   88 (145)
T PF09976_consen    9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR   88 (145)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence            345566777777778999999999999999999998   6788899999999999999999999999988665   4588


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++++.++...|+|++|+..++. +.-.+-.+.++..++.+..
T Consensus        89 l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~  129 (145)
T PF09976_consen   89 LRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYL  129 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHH
Confidence            9999999999999999999976 3334455666666666643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.30  E-value=3.7e-06  Score=87.93  Aligned_cols=150  Identities=13%  Similarity=0.103  Sum_probs=122.1

Q ss_pred             CCcccceecccCCChHHHHHHHHHHHHHHHh-------------HHHhhhccccccchhchHHHHHHHHHHHHHHHccCH
Q 008025          414 CPTSVSFIARHGGDRFLLDTVQNMYASLQEQ-------------ADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQW  480 (580)
Q Consensus       414 lp~g~q~~~~~~~d~~ll~la~~le~~l~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~  480 (580)
                      .|.--.+.|..-.+..+++.+..+-......             +.......++.....+|-....||.+|.+..+.+++
T Consensus       456 d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~  535 (777)
T KOG1128|consen  456 DPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE  535 (777)
T ss_pred             cchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence            3444455555566666666666655433322             111222233344556777889999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008025          481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV  560 (580)
Q Consensus       481 ~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  560 (580)
                      +.|.++|..++.++|++.++|+|++.+|++.++-.+|...+.++++.+-++.+.|-|.-.+....|.+++|++.|++.+.
T Consensus       536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hCC
Q 008025          561 LEP  563 (580)
Q Consensus       561 l~p  563 (580)
                      +..
T Consensus       616 ~~~  618 (777)
T KOG1128|consen  616 LRK  618 (777)
T ss_pred             hhh
Confidence            754

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=1.2e-05  Score=79.35  Aligned_cols=115  Identities=14%  Similarity=0.030  Sum_probs=78.2

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      |+++..+..+|..|-+.|+-.+|..++-...+.-|.+.+..-.|+..|+...-+++|+++|+++--+.|+..+-....+.
T Consensus       589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias  668 (840)
T KOG2003|consen  589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS  668 (840)
T ss_pred             CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence            44445555555555555555555555555555555555555555555555555667777777777777777777777788


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      |+.+.|+|++|.+.|++...-.|.+.+.+..|-++
T Consensus       669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri  703 (840)
T KOG2003|consen  669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRI  703 (840)
T ss_pred             HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            88888888888888888888888888887776655

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.30  E-value=4.7e-06  Score=92.00  Aligned_cols=107  Identities=14%  Similarity=0.035  Sum_probs=91.6

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcCCH
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------------------ATYYSNRAAAYLESGSF  514 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-------------------~~~~~~la~~~~~~~~~  514 (580)
                      ......+|+....++.+|..+++.+++.++...  +++..-+.+                   ..+++.||.||-++|++
T Consensus        55 ~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~  132 (906)
T PRK14720         55 EEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNEN  132 (906)
T ss_pred             HHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCCh
Confidence            345566788888999999999988887776665  555554444                   48999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       515 ~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                      ++|.+.|+++++++|+|+.+..++|..|... ++++|++++.+|++..=
T Consensus       133 ~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i  180 (906)
T PRK14720        133 KKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI  180 (906)
T ss_pred             HHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999 99999999999988743

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.29  E-value=3.3e-07  Score=87.72  Aligned_cols=99  Identities=32%  Similarity=0.451  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~  545 (580)
                      .....+...+..|+++.|++.|..++.++|..+..|-.++.+++++++...|+.+|..+++++|+..+.|-.++.+...+
T Consensus       116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll  195 (377)
T KOG1308|consen  116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL  195 (377)
T ss_pred             HHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence            44556777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCC
Q 008025          546 GYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       546 g~~~~A~~~~~~al~l~p~  564 (580)
                      |++++|..+++.+.+++=+
T Consensus       196 g~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  196 GNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hchHHHHHHHHHHHhcccc
Confidence            9999999999999998643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.27  E-value=2.7e-05  Score=72.69  Aligned_cols=115  Identities=17%  Similarity=0.137  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV---KAY  535 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~  535 (580)
                      ..+..+++.|...++.|+|++|++.|++.....|..   ..+...++.++++.++|++|+...++-+++.|+++   .++
T Consensus        32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            457889999999999999999999999999988775   57899999999999999999999999999998775   478


Q ss_pred             HHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          536 LRRGTAREMLGY--------YKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       536 ~~lg~~~~~~g~--------~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      |.+|.+++..-+        ..+|+..|+..++..|+...+-....+|.
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~  160 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV  160 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence            888999775432        57899999999999999876665555543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.26  E-value=3.3e-05  Score=72.12  Aligned_cols=116  Identities=22%  Similarity=0.147  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESG-----------SFLQAEADCTKAIN  526 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~  526 (580)
                      +...++.+.+|..+++.|+|++|+..|++.++..|++   ..+++.+|.+++++.           ...+|+..|++.++
T Consensus        39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~  118 (203)
T PF13525_consen   39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK  118 (203)
T ss_dssp             TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence            4456788999999999999999999999999999987   468999999987653           24589999999999


Q ss_pred             cCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          527 LDKKNVK-----------------AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       527 l~p~~~~-----------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      ..|++..                 --+..|..|++.|.|..|+.-++.+++..|+.+.....+..+.
T Consensus       119 ~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~  185 (203)
T PF13525_consen  119 RYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLA  185 (203)
T ss_dssp             H-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence            9998632                 2244577899999999999999999999999987766665543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.24  E-value=2.4e-05  Score=81.26  Aligned_cols=106  Identities=10%  Similarity=0.021  Sum_probs=91.1

Q ss_pred             HHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          465 EIAKEK-GNQAYKDKQWLKAISFYTEAIKLNGNNATYY-SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       465 ~~~~~~-g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      ..++.+ +....++|+++.|..+|.++.+.+|++..+. ...+.++...|++++|++.+++.++.+|+++.++..++.+|
T Consensus       118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~  197 (398)
T PRK10747        118 VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAY  197 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            334444 6666999999999999999999999985443 44599999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASL  570 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~  570 (580)
                      ...|++++|.+.+.+..+..+.++....
T Consensus       198 ~~~gdw~~a~~~l~~l~k~~~~~~~~~~  225 (398)
T PRK10747        198 IRTGAWSSLLDILPSMAKAHVGDEEHRA  225 (398)
T ss_pred             HHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence            9999999999999999988777655433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.22  E-value=5.3e-06  Score=65.36  Aligned_cols=61  Identities=18%  Similarity=0.211  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  524 (580)
                      +...++.+|.++++.|+|++|+..+++ .+.++.+...++.+|.|++++|+|++|++.++++
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            556788899999999999999999999 8888988899999999999999999999999875

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.22  E-value=1.1e-05  Score=79.19  Aligned_cols=111  Identities=15%  Similarity=0.079  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      +..-.....+.+.+..|  .+.+|...|+...+..+.++..++.++.|++.+|+|++|.+.++++++.+|+++.++.|+.
T Consensus       163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli  242 (290)
T PF04733_consen  163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI  242 (290)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            33334444555555555  5999999999988888889999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHH
Q 008025          540 TAREMLGYY-KEAIEDFSYALVLEPTNKRASLSA  572 (580)
Q Consensus       540 ~~~~~~g~~-~~A~~~~~~al~l~p~~~~~~~~l  572 (580)
                      .+...+|+. +.+.+++++..+.+|+.+......
T Consensus       243 v~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~  276 (290)
T PF04733_consen  243 VCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA  276 (290)
T ss_dssp             HHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred             HHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence            999999988 778889999999999988766544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.21  E-value=1.7e-05  Score=82.14  Aligned_cols=116  Identities=11%  Similarity=0.054  Sum_probs=98.6

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      ..++..+.+-..|..+...|+-++|.++...+++.++.+..+|+-+|.++..-.+|++|+++|+.|++++|+|-..|.-+
T Consensus        36 k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDl  115 (700)
T KOG1156|consen   36 KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDL  115 (700)
T ss_pred             hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            45677778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR  574 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  574 (580)
                      +.+..++++|+.....-.+.+++.|.....|..++.
T Consensus       116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Av  151 (700)
T KOG1156|consen  116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAV  151 (700)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            888888888888888888888888888777766554

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.15  E-value=5.5e-06  Score=89.23  Aligned_cols=127  Identities=20%  Similarity=0.231  Sum_probs=108.6

Q ss_pred             cccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-------------------------------
Q 008025          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY-------------------------------  500 (580)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~-------------------------------  500 (580)
                      .+.+....++..+.++..+|.+|..--|...|.++|++|.++++.+.++                               
T Consensus       480 ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~  559 (1238)
T KOG1127|consen  480 ALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAF  559 (1238)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHH
Confidence            3344455567778888899999988888889999999999998876433                               


Q ss_pred             -----HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          501 -----YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       501 -----~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                           |..+|..|.+-+++.+|+.+++.+++.+|++.+.|..+|.+|...|+|..|.+.|.++..++|.+..+.+..+.+
T Consensus       560 ~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~  639 (1238)
T KOG1127|consen  560 ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVM  639 (1238)
T ss_pred             HHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHH
Confidence                 556777777888899999999999999999999999999999999999999999999999999999988887776


Q ss_pred             Hhh
Q 008025          576 RKV  578 (580)
Q Consensus       576 ~~~  578 (580)
                      +..
T Consensus       640 ecd  642 (1238)
T KOG1127|consen  640 ECD  642 (1238)
T ss_pred             HHH
Confidence            654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.14  E-value=1.6e-05  Score=76.73  Aligned_cols=108  Identities=10%  Similarity=0.008  Sum_probs=81.4

Q ss_pred             CChHHHHHHHHHHHHHHHhHHHhhhccccccchhchHH---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHH
Q 008025          426 GDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQS---AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NAT  499 (580)
Q Consensus       426 ~d~~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~  499 (580)
                      .+...+..+..+..  ...+...+...+...+...|+.   ..+++.+|..++..|+|++|+..|+++++..|+   .++
T Consensus       141 ~e~~~Y~~A~~l~~--~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~d  218 (263)
T PRK10803        141 DANTDYNAAIALVQ--DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD  218 (263)
T ss_pred             CHHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhH
Confidence            34445555444321  1122233333344444444544   578999999999999999999999999999887   478


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      +++.+|.+|..+|++++|.+.|+++++..|+...+.
T Consensus       219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~  254 (263)
T PRK10803        219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK  254 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence            999999999999999999999999999999887543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.14  E-value=2.3e-06  Score=54.10  Aligned_cols=32  Identities=38%  Similarity=0.429  Sum_probs=21.0

Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008025          521 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAI  552 (580)
Q Consensus       521 ~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~  552 (580)
                      |+++|+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            56666666666666666666666666666664

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.13  E-value=0.00013  Score=64.05  Aligned_cols=103  Identities=16%  Similarity=0.181  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRGT  540 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~lg~  540 (580)
                      .+-.+.+|+.+...|++.+|...|++++. +.-+++..+..++++.+.++++..|.+.+++..+.+|.  .+.....+|.
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR  168 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR  168 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence            34557799999999999999999999987 46778899999999999999999999999999999885  4678888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                      +|..+|++.+|+..|+.++...|+-.
T Consensus       169 ~laa~g~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         169 TLAAQGKYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             HHHhcCCchhHHHHHHHHHHhCCCHH
Confidence            99999999999999999999998744

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.10  E-value=6.7e-06  Score=55.72  Aligned_cols=40  Identities=25%  Similarity=0.215  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      +++.+|.+|..+|++++|++.|+++++.+|+++.+|..+|
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            3444444444444444444444444444444444444444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.10  E-value=0.00019  Score=68.79  Aligned_cols=114  Identities=15%  Similarity=0.041  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC---------------C---HHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESG---------------S---FLQAEAD  520 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~---------------~---~~~A~~~  520 (580)
                      ....+.+.+|.++++.++|++|+..|++.++++|++   ..+++.+|.++..++               |   ..+|++.
T Consensus        67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~  146 (243)
T PRK10866         67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD  146 (243)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH
Confidence            344567899999999999999999999999999886   568899999876654               1   3578899


Q ss_pred             HHHHHHcCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          521 CTKAINLDKKNVK---A--------------YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       521 ~~~al~l~p~~~~---a--------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      +++.++..|+...   +              -+..|.-|.+.|+|..|+.-++.+++..|+.+.....|..+
T Consensus       147 ~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l  218 (243)
T PRK10866        147 FSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLM  218 (243)
T ss_pred             HHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence            9999999998632   1              23346668999999999999999999999887666555544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.09  E-value=6.9e-05  Score=76.20  Aligned_cols=105  Identities=12%  Similarity=0.010  Sum_probs=95.1

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008025          472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA  551 (580)
Q Consensus       472 ~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A  551 (580)
                      ..+...+++++|++.|++..+.+|+   +...++.++...++..+|++.+.++++.+|.+...+...+..+.+.++++.|
T Consensus       177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            3344567899999999999988875   6667999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          552 IEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       552 ~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ++..+++.++.|++-..|..|+.+...+
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi~~  281 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYIQL  281 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence            9999999999999999999999987543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.08  E-value=0.00013  Score=77.08  Aligned_cols=47  Identities=21%  Similarity=0.235  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA  507 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~  507 (580)
                      .+....+..+|..+++.|++++|...|...|+.+|++..++..+..+
T Consensus        35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~   81 (517)
T PF12569_consen   35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEA   81 (517)
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence            35556667778888888888888888888887777764444433333

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.07  E-value=8.4e-06  Score=55.22  Aligned_cols=44  Identities=30%  Similarity=0.273  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      +.+++.+|.+|..+|++++|++.|+++++.+|+|+.++..++++
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            35789999999999999999999999999999999999998763

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.04  E-value=5.1e-05  Score=74.60  Aligned_cols=115  Identities=16%  Similarity=-0.008  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      ..+.....-.++++.+|++.|.+.+++.-+.+.+..-.....+++.+..|  ++.+|...|++..+..+.++..+..++.
T Consensus       130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~  209 (290)
T PF04733_consen  130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAV  209 (290)
T ss_dssp             CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            34555567788999999999999999998888776666666666666666  5999999999988888889999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++..+|+|++|++.++++++.+|++++.+.++..+..
T Consensus       210 ~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~  246 (290)
T PF04733_consen  210 CHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL  246 (290)
T ss_dssp             HHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999998876644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.04  E-value=5.8e-05  Score=63.26  Aligned_cols=76  Identities=20%  Similarity=0.074  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT---NKRASLSA  572 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l  572 (580)
                      .+++++|+++-.+|+.++|+.+|+++++...+.   ..++..+|.++..+|++++|+..++++++..|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            578999999999999999999999999986544   568999999999999999999999999999898   66665554


Q ss_pred             HH
Q 008025          573 DR  574 (580)
Q Consensus       573 ~~  574 (580)
                      +.
T Consensus        82 Al   83 (120)
T PF12688_consen   82 AL   83 (120)
T ss_pred             HH
Confidence            43

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.03  E-value=4.9e-05  Score=82.19  Aligned_cols=100  Identities=18%  Similarity=0.185  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Q 008025          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAYLRRGTAREM-  544 (580)
Q Consensus       467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-  544 (580)
                      ....+...+.+++|++|++...++++.+|+|..++..+|.++..+++ .++|.++|..+.+++|++.-+|-.|+..|.+ 
T Consensus         5 aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~~   84 (1238)
T KOG1127|consen    5 ALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYERY   84 (1238)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHcc
Confidence            34567778899999999999999999999999999999999999998 9999999999999999999999999999987 


Q ss_pred             --cCCHHHHHHHHHHHHhhCCCCH
Q 008025          545 --LGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       545 --~g~~~~A~~~~~~al~l~p~~~  566 (580)
                        ..+++++-.+|++++.+.++..
T Consensus        85 ~dIl~ld~~~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   85 NDILDLDRAAKCYQRAVLILENQS  108 (1238)
T ss_pred             chhhhhhHhHHHHHHHHHhhhhhh
Confidence              4578999999999998877654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=7.7e-05  Score=73.30  Aligned_cols=107  Identities=15%  Similarity=0.065  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~  545 (580)
                      -|+--+..++..++|..|+.+-+|+++.+|++..++...|.++..+++.++|+-.|+.|+.+.|..-..|..+-.+|...
T Consensus       302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~  381 (564)
T KOG1174|consen  302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ  381 (564)
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence            34444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025          546 GYYKEAIEDFSYALVLEPTNKRASLSA  572 (580)
Q Consensus       546 g~~~~A~~~~~~al~l~p~~~~~~~~l  572 (580)
                      |++.||...-+.+++.-|+++..+..+
T Consensus       382 ~~~kEA~~~An~~~~~~~~sA~~LtL~  408 (564)
T KOG1174|consen  382 KRFKEANALANWTIRLFQNSARSLTLF  408 (564)
T ss_pred             chHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            555555555555555555555555544

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.99  E-value=9.6e-05  Score=65.69  Aligned_cols=78  Identities=22%  Similarity=0.247  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      .....|.++|.++++.+.++.||+...|+|+++|.+-.++..++.+|-++..|++|+++|.+.++.+|...++.-...
T Consensus       132 ~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~  209 (271)
T KOG4234|consen  132 ERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIA  209 (271)
T ss_pred             HHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            456677889999999999999999999999999999999999999999999999999999999999998876654443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.98  E-value=7.2e-06  Score=51.85  Aligned_cols=34  Identities=47%  Similarity=0.658  Sum_probs=31.9

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025          486 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA  519 (580)
Q Consensus       486 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  519 (580)
                      .|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999999999999999999999999864

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.96  E-value=9.2e-05  Score=76.75  Aligned_cols=115  Identities=13%  Similarity=0.028  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      -....|+..++....+++.++|++.++++++..|.....|..+|+++-++++.+.|.+.|...++..|+.+..|..++.+
T Consensus       649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl  728 (913)
T KOG0495|consen  649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL  728 (913)
T ss_pred             CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence            34567888888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      -.+.|+.-.|...++++.-.+|++...|...-+++
T Consensus       729 eEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~E  763 (913)
T KOG0495|consen  729 EEKDGQLVRARSILDRARLKNPKNALLWLESIRME  763 (913)
T ss_pred             HHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence            99999999999999999999999998887665554

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.94  E-value=0.00015  Score=63.82  Aligned_cols=82  Identities=23%  Similarity=0.137  Sum_probs=61.9

Q ss_pred             hchHHHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKD----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-----------FLQA  517 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~----------g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------~~~A  517 (580)
                      .+|.+++.+++.|.++...          .-+++|+..|+++|.++|+..++++++|.+|..++.           |++|
T Consensus        20 ~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   20 KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            4567888888888777654          345789999999999999999999999999987753           8899


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHH
Q 008025          518 EADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       518 ~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      .++|++|...+|+|......|-.
T Consensus       100 ~~~FqkAv~~~P~ne~Y~ksLe~  122 (186)
T PF06552_consen  100 TEYFQKAVDEDPNNELYRKSLEM  122 (186)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcHHHHHHHHH
Confidence            99999999999998765544433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.93  E-value=1.6e-05  Score=50.39  Aligned_cols=32  Identities=44%  Similarity=0.636  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      .+|+++|.++..+|++++|+++|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            34555555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.90  E-value=2.1e-05  Score=49.88  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~  530 (580)
                      .+|+++|.+|..++++++|+++|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            56777777777777777777777777777775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK15331 chaperone protein SicA; Provisional

Probab=97.89  E-value=5.4e-05  Score=66.05  Aligned_cols=90  Identities=11%  Similarity=0.068  Sum_probs=81.1

Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025          490 AIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS  569 (580)
Q Consensus       490 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  569 (580)
                      +..+.++.-+..+..|.-++..|++++|...|+-...++|.+++.|+.||.++..+++|++|+..|-.+..++++|+...
T Consensus        29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~  108 (165)
T PRK15331         29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV  108 (165)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence            33445566788899999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhh
Q 008025          570 LSADRLRKVF  579 (580)
Q Consensus       570 ~~l~~l~~~~  579 (580)
                      ...+.+.-++
T Consensus       109 f~agqC~l~l  118 (165)
T PRK15331        109 FFTGQCQLLM  118 (165)
T ss_pred             chHHHHHHHh
Confidence            8888876543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.00024  Score=68.56  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------cCC-
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--------------LDK-  529 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------------l~p-  529 (580)
                      ..-..+|.++|+.|+|++|+..|.-+...+.-+.+.+.+|+.|++-+|+|.+|.+...++-+              ++. 
T Consensus        58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE  137 (557)
T KOG3785|consen   58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE  137 (557)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence            34455788889999999999999888877666677788888888777777766665544321              110 


Q ss_pred             -----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025          530 -----------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  573 (580)
Q Consensus       530 -----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  573 (580)
                                 +..+-...++.+++..-.|++|++.|.+.+.-+|+-.....+++
T Consensus       138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~A  192 (557)
T KOG3785|consen  138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMA  192 (557)
T ss_pred             HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHH
Confidence                       11122233444455555566666666666665555444443333

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.84  E-value=4.1e-05  Score=48.47  Aligned_cols=32  Identities=47%  Similarity=0.632  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      ++|+.+|.++..+|++++|+++|+++++++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            34455555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.83  E-value=0.00058  Score=72.31  Aligned_cols=99  Identities=15%  Similarity=0.037  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~  543 (580)
                      ..+++.++..+-..|++++|+++.+++|+..|...+.|+..|.+|-+.|++.+|.++++.+-++|..+-..-...+..+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            46778899999999999999999999999999999999999999999999999999999999999998888888889999


Q ss_pred             HcCCHHHHHHHHHHHHhhC
Q 008025          544 MLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       544 ~~g~~~~A~~~~~~al~l~  562 (580)
                      +.|+.++|.+.+....+-+
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCC
Confidence            9999999999998776554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.82  E-value=2.4e-05  Score=74.90  Aligned_cols=78  Identities=21%  Similarity=0.198  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       501 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .-..|+-|+++|.|++|+.||.+++.++|.|+..+.|++.+|+++++|..|+.+++.++.++.....+|...+..+..
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~  177 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES  177 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999999998777777766665544

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.82  E-value=6.6e-05  Score=75.82  Aligned_cols=113  Identities=27%  Similarity=0.249  Sum_probs=101.3

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES---GSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      +-++.++.++..|+-.+.......|+..|.++++..|.....+.+++.++++.   ++.-.|+.++.++++++|...++|
T Consensus       369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah  448 (758)
T KOG1310|consen  369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH  448 (758)
T ss_pred             hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence            34577888889999999999999999999999999999999999999999887   477789999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  571 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  571 (580)
                      +.|+.++.+++++.+|+++...+....|.+..-...
T Consensus       449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~  484 (758)
T KOG1310|consen  449 FRLARALNELTRYLEALSCHWALQMSFPTDVARQNF  484 (758)
T ss_pred             HHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhh
Confidence            999999999999999999999888889866544433

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.82  E-value=4.7e-05  Score=48.16  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~  531 (580)
                      .+|+.+|.+|+.+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            466777777777777777777777777777764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.78  E-value=0.00081  Score=59.13  Aligned_cols=97  Identities=23%  Similarity=0.169  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------------------ATYYSNRAAAYLESGSFLQAEADCT  522 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~~~~~  522 (580)
                      ..+...|......++...++..+.+++.+...+                      ..+...++..+...|++++|++.++
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            344556777777888899999999999874331                      2456778888899999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       523 ~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      +++.++|.+-.+|..+-.+|..+|++.+|++.|+++.+.
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.76  E-value=0.00015  Score=71.55  Aligned_cols=101  Identities=26%  Similarity=0.255  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCC--CC-
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG--NN----ATYYSNRAAAYLES-GSFLQAEADCTKAINLDK--KN-  531 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p--~~----~~~~~~la~~~~~~-~~~~~A~~~~~~al~l~p--~~-  531 (580)
                      ..+..+.+.+..+ +..++++|+.+|++++++.-  ++    ...+.++|.+|... +++++|+++|++|+++..  +. 
T Consensus        73 ~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~  151 (282)
T PF14938_consen   73 EAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP  151 (282)
T ss_dssp             HHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence            3445555555555 55599999999999998732  22    56889999999998 999999999999999843  22 


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                         ...+.++|.++.++++|++|++.|++.....-
T Consensus       152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l  186 (282)
T PF14938_consen  152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL  186 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence               34678889999999999999999999987643

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.72  E-value=0.00044  Score=59.08  Aligned_cols=73  Identities=21%  Similarity=0.219  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC---------------HHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGS---------------FLQAEADCTK  523 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~---------------~~~A~~~~~~  523 (580)
                      -..++...++..+++.++|++|+..|++.++++|.++   -+++.+|.+++++.+               ..+|...|++
T Consensus        45 ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~  124 (142)
T PF13512_consen   45 YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQ  124 (142)
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHH
Confidence            3457788999999999999999999999999999874   578999999999887               8899999999


Q ss_pred             HHHcCCCCHHH
Q 008025          524 AINLDKKNVKA  534 (580)
Q Consensus       524 al~l~p~~~~a  534 (580)
                      .++..|++..+
T Consensus       125 lv~~yP~S~ya  135 (142)
T PF13512_consen  125 LVRRYPNSEYA  135 (142)
T ss_pred             HHHHCcCChhH
Confidence            99999987654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.72  E-value=0.00044  Score=71.19  Aligned_cols=128  Identities=12%  Similarity=0.043  Sum_probs=94.3

Q ss_pred             HHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025          442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC  521 (580)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  521 (580)
                      ...+...+......-....|++..+++..-.++.+..+|++|+...++-....-.+ ...+..+.|.++++..++|++.+
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~  102 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTL  102 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHH
Confidence            33333333333333344446777788888888999999999995544433222222 23379999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025          522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  573 (580)
Q Consensus       522 ~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  573 (580)
                      +   -+++.........|..++++++|++|.+.|+..++.+.++.+......
T Consensus       103 ~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n  151 (652)
T KOG2376|consen  103 K---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN  151 (652)
T ss_pred             h---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            8   567777788899999999999999999999999998887766655443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.70  E-value=0.00067  Score=66.81  Aligned_cols=98  Identities=17%  Similarity=0.137  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------------------------------CCCCHHHHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------------------------------NGNNATYYSNRAAAYLE  510 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-------------------------------~p~~~~~~~~la~~~~~  510 (580)
                      +++......+..+...|++++|.+...++++.                               .|+++..++.||..+++
T Consensus       261 ~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k  340 (400)
T COG3071         261 NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK  340 (400)
T ss_pred             cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence            44555566677777777777777776666644                               45555555666666666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008025          511 SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV  560 (580)
Q Consensus       511 ~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  560 (580)
                      .+.|.+|.++++.+++..| +...|..+|.++.++|+.++|.++++.++.
T Consensus       341 ~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         341 NKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             hhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            6666666666666666554 344455556666666666666666665553

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.69  E-value=0.00032  Score=69.15  Aligned_cols=104  Identities=19%  Similarity=0.206  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008025          462 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGN--N----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----  530 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~-g~~~~Ai~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----  530 (580)
                      .-+..+..+|..+... +++++|+++|++++++...  .    ..++..++.++.++++|++|++.|++.....-+    
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~  191 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL  191 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence            4467888999999999 9999999999999997332  1    467789999999999999999999999875322    


Q ss_pred             --CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008025          531 --NV-KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN  565 (580)
Q Consensus       531 --~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  565 (580)
                        +. ..++..++++..+|++..|.+.+++....+|..
T Consensus       192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence              12 345677889999999999999999999999854

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.00012  Score=68.91  Aligned_cols=126  Identities=20%  Similarity=0.192  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHHHHHHhHHHhhhccccccchhc--hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008025          428 RFLLDTVQNMYASLQEQADIATKSKLSTNTFNQ--KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRA  505 (580)
Q Consensus       428 ~~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la  505 (580)
                      ..+..-.-+++.++...+........  ..++.  ...+....+.|...++.|+|++|++.|+.+++...-++..-++++
T Consensus       108 ~~L~~~~lqLqaAIkYse~Dl~g~rs--LveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA  185 (459)
T KOG4340|consen  108 PALHSRVLQLQAAIKYSEGDLPGSRS--LVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA  185 (459)
T ss_pred             HHHHHHHHHHHHHHhcccccCcchHH--HHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH
Confidence            45555555666666544333222111  01111  256788899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHc----CCC----------------C---------HHHHHHHHHHHHHcCCHHHHHHHH
Q 008025          506 AAYLESGSFLQAEADCTKAINL----DKK----------------N---------VKAYLRRGTAREMLGYYKEAIEDF  555 (580)
Q Consensus       506 ~~~~~~~~~~~A~~~~~~al~l----~p~----------------~---------~~a~~~lg~~~~~~g~~~~A~~~~  555 (580)
                      .|+++.++|+.|+++..+.++.    +|.                |         .++++.++-++++.++++.|++.+
T Consensus       186 LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  186 LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence            9999999999999998887776    332                1         347777888899999999998876

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.68  E-value=6.6e-05  Score=73.65  Aligned_cols=100  Identities=18%  Similarity=0.192  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINL----DKK--  530 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----~p~--  530 (580)
                      .-.++-++|+.|+-.|+|++||..-+.-+.+..+      ...++.|+|+||.-+|+++.|+++|.+.+.+    ...  
T Consensus       194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v  273 (639)
T KOG1130|consen  194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV  273 (639)
T ss_pred             hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence            3455666777777777777777666655555332      1356667777777777777777777665444    211  


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                      .++..|.+|..|.-+.++++|+.++++-+.+.
T Consensus       274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            23445666666666667777777666665543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=0.0006  Score=63.32  Aligned_cols=116  Identities=16%  Similarity=0.212  Sum_probs=94.9

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----N--GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  534 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~----~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a  534 (580)
                      +.+......+|...++.||.+.|..+|++.-+.    +  ...-..+.+.+.+|...++|.+|...+.+.++.||.++.+
T Consensus       209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a  288 (366)
T KOG2796|consen  209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVA  288 (366)
T ss_pred             cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhh
Confidence            455666778999999999999999999855432    2  2245678889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHH
Q 008025          535 YLRRGTAREMLGYYKEAIEDFSYALVLEPTN---KRASLSADRLR  576 (580)
Q Consensus       535 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~l~  576 (580)
                      .++++.|+..+|+..+|++.+++++++.|..   .....+|..+.
T Consensus       289 ~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmy  333 (366)
T KOG2796|consen  289 NNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMY  333 (366)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHH
Confidence            9999999999999999999999999999964   33444444443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.59  E-value=0.0012  Score=53.61  Aligned_cols=94  Identities=18%  Similarity=0.260  Sum_probs=75.4

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------C
Q 008025          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGN------------NATYYSNRAAAYLESGSFLQAEADCTKAINL-------D  528 (580)
Q Consensus       468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-------~  528 (580)
                      ...|...++.|-|++|...|.++++....            +.-++..|+.++..+|+|++++...+++|..       +
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~   92 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH   92 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence            44677778889999999999999987422            3567889999999999999999888888765       4


Q ss_pred             CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          529 KKN----VKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       529 p~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      .+.    +.+-++++.++..+|+.++|.+.|+++-++
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            443    456688999999999999999999999876

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.59  E-value=0.00035  Score=48.88  Aligned_cols=47  Identities=19%  Similarity=0.225  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      +.+|.+|+.++++|+|++|..+.+.+++++|+|..+......+.+.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i   48 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI   48 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence            35677788888888888888888888888888888877777776654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.58  E-value=0.00067  Score=61.24  Aligned_cols=110  Identities=15%  Similarity=0.037  Sum_probs=87.8

Q ss_pred             HhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025          447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (580)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  526 (580)
                      ..++..+.+.....|+.+.+++.+|..+...|+|+.|.+.|+..++++|.+--++.|+|..++--|+|+.|.+.+.+-.+
T Consensus        82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ  161 (297)
T COG4785          82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ  161 (297)
T ss_pred             HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence            34455566677778999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          527 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSY  557 (580)
Q Consensus       527 l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  557 (580)
                      .||+++---..+=.. ...-+..+|...+.+
T Consensus       162 ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~q  191 (297)
T COG4785         162 DDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQ  191 (297)
T ss_pred             cCCCChHHHHHHHHH-HhhCCHHHHHHHHHH
Confidence            999887422211111 123355666655543

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.58  E-value=0.0003  Score=70.62  Aligned_cols=115  Identities=17%  Similarity=0.105  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEA-IKLNGN--------NATYYSNRAAAYLESGSFLQAEADCTKAINL-----  527 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~a-l~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----  527 (580)
                      +.+..++.+.+.++..|+|.+|.+.+... +...|.        ...+|+|+|.++++++.|..+..+|.+|++.     
T Consensus       238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL  317 (696)
T KOG2471|consen  238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL  317 (696)
T ss_pred             CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence            55677888999999999999999987653 222232        3457899999999999999999999999961     


Q ss_pred             ----CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          528 ----DK---------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       528 ----~p---------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                          .|         ...+..||.|+.|...|+.-.|.+||.++.+..-.+|..|..++++.
T Consensus       318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC  379 (696)
T KOG2471|consen  318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC  379 (696)
T ss_pred             hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence                12         34678999999999999999999999999999999999999998864

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.56  E-value=0.0017  Score=54.16  Aligned_cols=83  Identities=13%  Similarity=0.076  Sum_probs=70.0

Q ss_pred             CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025          497 NATYYSNRAAAYLESGS---FLQAEADCTKAIN-LDKK-NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  571 (580)
Q Consensus       497 ~~~~~~~la~~~~~~~~---~~~A~~~~~~al~-l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  571 (580)
                      .....+++++++....+   .++.+..++..++ -.|. .-+..|.++..++++++|++++++++..++.+|+|.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            34678889999987764   6788899999997 4443 35677889999999999999999999999999999999999


Q ss_pred             HHHHHhhh
Q 008025          572 ADRLRKVF  579 (580)
Q Consensus       572 l~~l~~~~  579 (580)
                      ...++++|
T Consensus       111 k~~ied~i  118 (149)
T KOG3364|consen  111 KETIEDKI  118 (149)
T ss_pred             HHHHHHHH
Confidence            88888775

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.56  E-value=0.00063  Score=64.29  Aligned_cols=79  Identities=13%  Similarity=0.048  Sum_probs=71.1

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  536 (580)
                      .+..++++|.+|+.++.+|+|+.|...|..+++-.|++   ++.++.+|.|...+++.++|-..|+++++..|+...+..
T Consensus       174 s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         174 STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            34557899999999999999999999999999987765   689999999999999999999999999999999887655


Q ss_pred             HH
Q 008025          537 RR  538 (580)
Q Consensus       537 ~l  538 (580)
                      ..
T Consensus       254 Ak  255 (262)
T COG1729         254 AK  255 (262)
T ss_pred             HH
Confidence            43

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.46  E-value=0.0046  Score=63.97  Aligned_cols=89  Identities=17%  Similarity=0.103  Sum_probs=78.0

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------
Q 008025          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK------------------  529 (580)
Q Consensus       468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p------------------  529 (580)
                      ++.+.++|+.+..++|+..++   .+++.+.......|.+++++++|++|+..|+..++.+.                  
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence            789999999999999999998   45666677889999999999999999999999866642                  


Q ss_pred             -------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          530 -------------KNVKAYLRRGTAREMLGYYKEAIEDFSYAL  559 (580)
Q Consensus       530 -------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  559 (580)
                                   +..+.+||.+.++...|+|.+|++.+++++
T Consensus       160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~  202 (652)
T KOG2376|consen  160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL  202 (652)
T ss_pred             hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence                         245688999999999999999999999993

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.46  E-value=0.00044  Score=68.06  Aligned_cols=99  Identities=16%  Similarity=0.105  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------C
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN----G--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDK------K  530 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~----p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p------~  530 (580)
                      .-.++.++|+++.-.|+++.|+++|.+.+.+.    .  ..+...|.||++|.-+.++++|+.+..+=+++..      .
T Consensus       234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriG  313 (639)
T KOG1130|consen  234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIG  313 (639)
T ss_pred             HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34678899999999999999999999987652    2  2356788999999999999999999998777643      3


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      ...+++.+|.+|..+|..++|..+.++.+++
T Consensus       314 e~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  314 ELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            4678999999999999999999998888765

>PRK10941 hypothetical protein; Provisional

Probab=97.45  E-value=0.0013  Score=63.46  Aligned_cols=73  Identities=11%  Similarity=0.058  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      .+.++=..+.+.++++.|+.+.+..+.+.|+++.-+..+|.+|.+++.+..|..+++..++..|+.+.+-.-+
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik  255 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR  255 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence            3344555556666666666666666666666666666666666666666666666666666666655554433

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.40  E-value=0.00088  Score=55.43  Aligned_cols=64  Identities=28%  Similarity=0.291  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       501 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      +-..|.+..+.|+.+.|++.|.++|.+.|.++.+|+|++.++.-+|+.++|.+.+++++++...
T Consensus        46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            3456778889999999999999999999999999999999999999999999999999999544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=0.0012  Score=63.77  Aligned_cols=87  Identities=20%  Similarity=0.182  Sum_probs=75.2

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 008025          472 NQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE  550 (580)
Q Consensus       472 ~~~~~~g~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~  550 (580)
                      ..++.+.||..|+..++-.+.++.+.- .....+|.||+.+|+|++|++.|+-+.+-+..+.+.+.+++.+++.+|+|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            456778899999999998887765443 6677899999999999999999999998777788999999999999999999


Q ss_pred             HHHHHHHH
Q 008025          551 AIEDFSYA  558 (580)
Q Consensus       551 A~~~~~~a  558 (580)
                      |+....++
T Consensus       110 A~~~~~ka  117 (557)
T KOG3785|consen  110 AKSIAEKA  117 (557)
T ss_pred             HHHHHhhC
Confidence            98876655

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.32  E-value=0.00038  Score=43.95  Aligned_cols=30  Identities=50%  Similarity=0.706  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                      +|+.+|.+|..+|++++|.++|+++++++|
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            445555555555555555555555555554

...

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.0021  Score=60.88  Aligned_cols=109  Identities=16%  Similarity=0.127  Sum_probs=63.9

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------HHHc--
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK----------AINL--  527 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~----------al~l--  527 (580)
                      .|+.-..+..+|.+|+...+|..|.++|++.-.+.|+...+.+..+..+++.+.+..|+.....          .+++  
T Consensus        40 ~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqa  119 (459)
T KOG4340|consen   40 SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQA  119 (459)
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3444555666777777777777777777777777776666666666666665555555443321          1111  


Q ss_pred             ------------------CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025          528 ------------------DK--KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  568 (580)
Q Consensus       528 ------------------~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  568 (580)
                                        -|  +.+....+.|.++++.|+|++|.+-|+.+++...-++-.
T Consensus       120 AIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll  180 (459)
T KOG4340|consen  120 AIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL  180 (459)
T ss_pred             HHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh
Confidence                              11  334456666666666666666666666666665444433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.31  E-value=0.00042  Score=43.74  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~  530 (580)
                      .+|+.+|.+|.++|++++|+++|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            46677777777777777777777777777764

...

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.0083  Score=57.29  Aligned_cols=98  Identities=17%  Similarity=0.168  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK----------------------  523 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~----------------------  523 (580)
                      ..+..+......+++.+|...|..++...|++..+...++.||...|+++.|...+..                      
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q  215 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ  215 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence            3455667777778888888888888888888877888888888888777655544432                      


Q ss_pred             ------------HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          524 ------------AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       524 ------------al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                                  .+..+|++.++-+.++..|...|++++|.+.+-..++.+.
T Consensus       216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence                        2333799999999999999999999999999988887754

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.29  E-value=0.0058  Score=54.64  Aligned_cols=101  Identities=16%  Similarity=0.004  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-AYLRRG  539 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~-a~~~lg  539 (580)
                      ......++..+...+++++|+..+++++....+.   .-+-.+|+.+.++++++++|+..++....  +++.. .--.+|
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrG  166 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRG  166 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhh
Confidence            3455678999999999999999999999764432   35667899999999999999988876433  22222 345579


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          540 TAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                      .++...|+-++|+..|+++++.+++..
T Consensus       167 Dill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         167 DILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             hHHHHcCchHHHHHHHHHHHHccCChH
Confidence            999999999999999999999985443

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00046  Score=63.26  Aligned_cols=78  Identities=17%  Similarity=0.146  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      -+..-|..++.-.+|..|+.+|.++|.++|..+..|-|.+.+|.++++++...+..++++++.|+....++.++....
T Consensus        12 qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l   89 (284)
T KOG4642|consen   12 QLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL   89 (284)
T ss_pred             HHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence            344567777888899999999999999999999999999999999999999999999999999999999999887643

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.24  E-value=0.0091  Score=55.64  Aligned_cols=108  Identities=26%  Similarity=0.297  Sum_probs=87.2

Q ss_pred             HHHHH-HHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Q 008025          468 KEKGN-QAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-NVKAYLRRGTAR  542 (580)
Q Consensus       468 ~~~g~-~~~~~g~~~~Ai~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~  542 (580)
                      ...+. .+...+++++|+..|.+++...|   .....+..++..+...+++++++..+.++++..+. ....+..++..+
T Consensus       133 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (291)
T COG0457         133 ALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY  212 (291)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence            33444 78889999999999999988776   45666777777788888999999999999999988 688899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      ...+++++|...+.++++..|.....+..+...
T Consensus       213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  245 (291)
T COG0457         213 LKLGKYEEALEYYEKALELDPDNAEALYNLALL  245 (291)
T ss_pred             HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHH
Confidence            999999999999999999988855555544443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.22  E-value=0.012  Score=52.12  Aligned_cols=98  Identities=13%  Similarity=0.090  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      .+...+..+++..+..+++..|...+++..+.+|.  .++.+..++.+|-.+|++.+|...|+.++...|+ +.+....+
T Consensus       122 ~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~  200 (251)
T COG4700         122 HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYA  200 (251)
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHH
Confidence            56678889999999999999999999999999886  4677888999999999999999999999999984 67778889


Q ss_pred             HHHHHcCCHHHHHHHHHHHHh
Q 008025          540 TAREMLGYYKEAIEDFSYALV  560 (580)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~  560 (580)
                      ..+.++|+.+++...+....+
T Consensus       201 e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         201 EMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHhcchhHHHHHHHHHHH
Confidence            999999999888877765543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.19  E-value=0.026  Score=52.44  Aligned_cols=103  Identities=29%  Similarity=0.341  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      .....+...+..+...++++.++..+.+++...+. ....+..++.++...+++++|+..+.+++...|.....+..++.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  244 (291)
T COG0457         165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLAL  244 (291)
T ss_pred             chHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHH
Confidence            34555566666677888999999999999999988 68889999999999999999999999999999987778888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      .+...++++++...++++++..|.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         245 LLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc
Confidence            888777899999999999998886

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.17  E-value=0.00028  Score=71.31  Aligned_cols=110  Identities=16%  Similarity=0.103  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008025          434 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS  513 (580)
Q Consensus       434 a~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~  513 (580)
                      ..+..+.+.......+...+.+.++.+++.+..+-+++.++++.++|..|+..+.++++++|....+|+.+|.+.+.+++
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~   87 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE   87 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence            34445555566666666777777888888888889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025          514 FLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (580)
Q Consensus       514 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~  543 (580)
                      +.+|...|++...+.|+...+.-.+-.|-.
T Consensus        88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~  117 (476)
T KOG0376|consen   88 FKKALLDLEKVKKLAPNDPDATRKIDECNK  117 (476)
T ss_pred             HHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence            999999999999999999998877766544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.13  E-value=0.0068  Score=59.59  Aligned_cols=123  Identities=12%  Similarity=0.069  Sum_probs=87.3

Q ss_pred             hccccccchhchHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          450 KSKLSTNTFNQKQSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~-~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      ...+.............|...|...++ .++.+.|...|+.+++..|.+...|......+..+++.+.|...|++++..-
T Consensus        21 R~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l  100 (280)
T PF05843_consen   21 RKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSL  100 (280)
T ss_dssp             HHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence            333344444444456777778888777 5666669999999998888888888888888888888899999999988876


Q ss_pred             CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025          529 KKNV---KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  572 (580)
Q Consensus       529 p~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l  572 (580)
                      +...   ..|.....--.+.|+.+...+..+++.++.|++.......
T Consensus       101 ~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~  147 (280)
T PF05843_consen  101 PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS  147 (280)
T ss_dssp             SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            6544   4666666666778888888888888888888866655433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.12  E-value=0.013  Score=54.71  Aligned_cols=115  Identities=16%  Similarity=0.154  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcC--CCCHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAI----NLD--KKNVKA  534 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al----~l~--p~~~~a  534 (580)
                      ..-.+.+.+.+++.-.|+|.-.++.|++.++.+ |.++.....|+.+.++.||.+.|..+++++-    +++  ..+...
T Consensus       175 Rl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V  254 (366)
T KOG2796|consen  175 RLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV  254 (366)
T ss_pred             HHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence            344577888999999999999999999999998 6678888999999999999999999999443    333  244567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          535 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       535 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      ..+.+.+|.-.++|.+|...|.+.+..+|.++.+.++.+-+.
T Consensus       255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl  296 (366)
T KOG2796|consen  255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL  296 (366)
T ss_pred             HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHH
Confidence            788889999999999999999999999999988877666553

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.12  E-value=0.0092  Score=64.70  Aligned_cols=119  Identities=10%  Similarity=-0.075  Sum_probs=100.4

Q ss_pred             cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      -....|+...+....|..+++.|++++|..+++..-...+++-..+.-+-.||..++++++|..+|++++..+|+ .+..
T Consensus        35 llkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell  113 (932)
T KOG2053|consen   35 LLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELL  113 (932)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHH
Confidence            334556777777788999999999999998888777778888889999999999999999999999999999998 8888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHH
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNK-RASLSADRL  575 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~l~~l  575 (580)
                      +.+=.+|.+-++|.+=.+.--+..+..|+++ ..|....-+
T Consensus       114 ~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sli  154 (932)
T KOG2053|consen  114 YHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLI  154 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence            8899999999999888888888888888886 445544443

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.0008  Score=65.35  Aligned_cols=116  Identities=26%  Similarity=0.326  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---N----------------NATYYSNRAAAYLESGSFLQAEADCTKA  524 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---~----------------~~~~~~~la~~~~~~~~~~~A~~~~~~a  524 (580)
                      .+...+.++..+++++|..|...|.+++....   .                -...+.+++.+-++++.+..|+.....+
T Consensus       222 ~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~  301 (372)
T KOG0546|consen  222 EEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEA  301 (372)
T ss_pred             hhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccc
Confidence            34556688899999999999999999886421   1                1235667889999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          525 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       525 l~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ++.++...+++|.++..+..+.++++|++.++.+....|++......+...++++
T Consensus       302 ~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~  356 (372)
T KOG0546|consen  302 LRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK  356 (372)
T ss_pred             cccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence            9999999999999999999999999999999999999999999988888776653

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.00  E-value=0.013  Score=56.54  Aligned_cols=70  Identities=19%  Similarity=0.251  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~  531 (580)
                      -++-.|.+++.+.+..|+|..|+....+++.++|.+..+++.-+.|+++++++++|.++|+..++++-..
T Consensus       117 lnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  117 LNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            4566788999999999999999999999999999999999999999999999999999999998887543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.00  E-value=0.0095  Score=60.82  Aligned_cols=131  Identities=11%  Similarity=-0.049  Sum_probs=87.6

Q ss_pred             HHHHHHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------------------
Q 008025          438 YASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---------------------  496 (580)
Q Consensus       438 e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---------------------  496 (580)
                      +++-++.+....+....+..+.+++-+++|..++....  .-..+|.++|+|+++....                     
T Consensus       176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R  253 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR  253 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence            33344444443333334445555666666666665422  2345566666666543110                     


Q ss_pred             ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHH
Q 008025          497 ----NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRGTAREMLGYYKEAIEDFSYALVL-EPTNKRAS  569 (580)
Q Consensus       497 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~p~~~~~~  569 (580)
                          ..-+...+|+|..++|+.++|++.++..++.+|.  +-..++++-.++..++.|.+++..+.+.=++ .|+.+...
T Consensus       254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~  333 (539)
T PF04184_consen  254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATIC  333 (539)
T ss_pred             ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHH
Confidence                0234578999999999999999999999998875  5678999999999999999999999887544 34444443


Q ss_pred             H
Q 008025          570 L  570 (580)
Q Consensus       570 ~  570 (580)
                      +
T Consensus       334 Y  334 (539)
T PF04184_consen  334 Y  334 (539)
T ss_pred             H
Confidence            3

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.98  E-value=0.0051  Score=65.04  Aligned_cols=105  Identities=21%  Similarity=0.083  Sum_probs=85.6

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  533 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~  533 (580)
                      ...|+..-.++..|..+..+|+.++|++.|++++....+    ..-.++.++++++-+.+|++|.+++.+.++.+. +.+
T Consensus       261 ~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSk  339 (468)
T PF10300_consen  261 KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSK  339 (468)
T ss_pred             HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHH
Confidence            345777888899999999999999999999998853322    346789999999999999999999999999764 444


Q ss_pred             H--HHHHHHHHHHcCCH-------HHHHHHHHHHHhhCC
Q 008025          534 A--YLRRGTAREMLGYY-------KEAIEDFSYALVLEP  563 (580)
Q Consensus       534 a--~~~lg~~~~~~g~~-------~~A~~~~~~al~l~p  563 (580)
                      +  .|..|.++..+++.       ++|.+.|+++-.+-.
T Consensus       340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            3  35569999999999       888888887766543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.98  E-value=0.028  Score=55.67  Aligned_cols=92  Identities=14%  Similarity=0.127  Sum_probs=49.9

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 008025          470 KGNQAYKDKQWLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY  548 (580)
Q Consensus       470 ~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~  548 (580)
                      -+...-+.||++.|-.++.++-++.++ .-.....++......+++..|.....++++..|.++.+....-.+|...|++
T Consensus       124 aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~  203 (400)
T COG3071         124 AAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW  203 (400)
T ss_pred             HHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence            344444555555555555555555222 2334445555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhh
Q 008025          549 KEAIEDFSYALVL  561 (580)
Q Consensus       549 ~~A~~~~~~al~l  561 (580)
                      .+....+.+.-+-
T Consensus       204 ~~ll~~l~~L~ka  216 (400)
T COG3071         204 QALLAILPKLRKA  216 (400)
T ss_pred             HHHHHHHHHHHHc
Confidence            5555555544443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.98  E-value=0.0072  Score=49.01  Aligned_cols=93  Identities=14%  Similarity=0.277  Sum_probs=78.0

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHcCCCCHHHH
Q 008025          470 KGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGS-----------FLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       470 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~-----------~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      ++..++.+|++-+|++..+..+...+++.   ..+..-|.+++++..           ...++++|.++..+.|+.+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57789999999999999999999988765   566777877766542           4578999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                      +.+|.=+-...-|+++..-.++++...
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            999888777778888988888888763

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.98  E-value=0.0041  Score=43.50  Aligned_cols=43  Identities=14%  Similarity=0.169  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      +.++.+|..++++|+|++|.++++.+|+++|+|.++......+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            4678899999999999999999999999999998887665544

>PRK10941 hypothetical protein; Provisional

Probab=96.94  E-value=0.022  Score=55.08  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ....++=.+|.+.++++.|+.+.++.+.++|+++.-+--+|.+|.++|.+..|..+++..++..|+++.+.....++..+
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l  261 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI  261 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            45667888999999999999999999999999999999999999999999999999999999999999998887777654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.94  E-value=0.022  Score=53.49  Aligned_cols=106  Identities=15%  Similarity=0.118  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          464 AEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       464 ~~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      -..+.++|..+.+    ..++.+|.-+|+..-+..+..+...+.++.|++.+++|++|...++.++.-++++++.+.|+-
T Consensus       169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nli  248 (299)
T KOG3081|consen  169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLI  248 (299)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            3455566666654    356899999999998888889999999999999999999999999999999999999999998


Q ss_pred             HHHHHcCCHHHH-HHHHHHHHhhCCCCHHHH
Q 008025          540 TAREMLGYYKEA-IEDFSYALVLEPTNKRAS  569 (580)
Q Consensus       540 ~~~~~~g~~~~A-~~~~~~al~l~p~~~~~~  569 (580)
                      .+-..+|.-.++ ...+.+....+|+.+-+.
T Consensus       249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk  279 (299)
T KOG3081|consen  249 VLALHLGKDAEVTERNLSQLKLSHPEHPFVK  279 (299)
T ss_pred             HHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence            888888876554 556677777788876554

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.89  E-value=0.0027  Score=65.32  Aligned_cols=106  Identities=22%  Similarity=0.149  Sum_probs=94.6

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008025          471 GNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK  549 (580)
Q Consensus       471 g~~~~~~g~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~  549 (580)
                      |......|+...|++++..++...|... ...-+|+++.++-+-...|...+.+++.++-..+-.++.+|.++..+.+.+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~  693 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS  693 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence            3444567999999999999999988754 457789999999999999999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          550 EAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       550 ~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      .|++.|+++++++|+++.....|..+.
T Consensus       694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  694 GALEAFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence            999999999999999999988877654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.87  E-value=0.086  Score=49.66  Aligned_cols=117  Identities=17%  Similarity=0.114  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCC
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGS--------FLQAEADCTKAINLDKK  530 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~--------~~~A~~~~~~al~l~p~  530 (580)
                      -..++...++.++++.++|++|+...++-+++.|.++   -+++.+|.+++..-+        -.+|+..+++.++..|+
T Consensus        69 ~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn  148 (254)
T COG4105          69 YSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN  148 (254)
T ss_pred             ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence            3457788899999999999999999999999998864   467788888765432        45788999999999997


Q ss_pred             CHH---------------HHHH--HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          531 NVK---------------AYLR--RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       531 ~~~---------------a~~~--lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ..-               +.+.  .|.-|.+.|.+..|+.-++..++..|+.......|..+.+.
T Consensus       149 S~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~ea  213 (254)
T COG4105         149 SRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEA  213 (254)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            521               2333  36668899999999999999999999888877777776553

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.86  E-value=0.0089  Score=64.81  Aligned_cols=91  Identities=16%  Similarity=0.042  Sum_probs=85.9

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025          474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (580)
Q Consensus       474 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~  553 (580)
                      ....++|.+|+....+.++..|+..-+....|..+.++|++++|..+++..-...+++-..+..+-.+|..++++++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            45678999999999999999999999999999999999999999999988888889999999999999999999999999


Q ss_pred             HHHHHHhhCCC
Q 008025          554 DFSYALVLEPT  564 (580)
Q Consensus       554 ~~~~al~l~p~  564 (580)
                      +|+++++.+|+
T Consensus        99 ~Ye~~~~~~P~  109 (932)
T KOG2053|consen   99 LYERANQKYPS  109 (932)
T ss_pred             HHHHHHhhCCc
Confidence            99999999999

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.85  E-value=0.031  Score=54.93  Aligned_cols=101  Identities=13%  Similarity=-0.040  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      +|..+.+...+.+..+.|...|.++++..+.....|...|...+. .++.+.|.+.|+++++..|.+...|.....-+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            567777888888889999999999997666678899999999777 4566669999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCH
Q 008025          545 LGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       545 ~g~~~~A~~~~~~al~l~p~~~  566 (580)
                      +++.+.|...|++++..-|.+.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHH
T ss_pred             hCcHHHHHHHHHHHHHhcCchh
Confidence            9999999999999999877766

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.79  E-value=0.0024  Score=39.80  Aligned_cols=31  Identities=35%  Similarity=0.374  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      +++++|.++.++|++++|++.|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4455555555555555555555555555544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.79  E-value=0.011  Score=66.55  Aligned_cols=95  Identities=8%  Similarity=-0.057  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      ..|..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|.+.+++.++++|++...|..+..+|.+
T Consensus       463 ~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~  540 (697)
T PLN03081        463 MHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS  540 (697)
T ss_pred             cchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Confidence            45666778888888888888887764 2333 356788888888888999999999999999999888888888889999


Q ss_pred             cCCHHHHHHHHHHHHhh
Q 008025          545 LGYYKEAIEDFSYALVL  561 (580)
Q Consensus       545 ~g~~~~A~~~~~~al~l  561 (580)
                      .|++++|.+.+++..+.
T Consensus       541 ~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        541 SGRQAEAAKVVETLKRK  557 (697)
T ss_pred             CCCHHHHHHHHHHHHHc
Confidence            99999999988876654

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.78  E-value=0.12  Score=45.13  Aligned_cols=113  Identities=11%  Similarity=-0.188  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      .-...+......-...++.+++...+.-.-.+.|+.+..-..-|+.++..|+|.+|+..++.+.+..|..+.+--.++.|
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            34567778888888899999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      ++.+++.+-= .+-+++++..+ ++.+......+.
T Consensus        88 L~~~~D~~Wr-~~A~evle~~~-d~~a~~Lv~~Ll  120 (160)
T PF09613_consen   88 LYALGDPSWR-RYADEVLESGA-DPDARALVRALL  120 (160)
T ss_pred             HHHcCChHHH-HHHHHHHhcCC-ChHHHHHHHHHH
Confidence            9999986432 33344555443 666666665554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.76  E-value=0.0026  Score=39.56  Aligned_cols=31  Identities=16%  Similarity=0.114  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~  530 (580)
                      +++++|.+|.++|++++|++.|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5666777777777777777777777776665

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.71  E-value=0.015  Score=61.43  Aligned_cols=100  Identities=17%  Similarity=0.055  Sum_probs=86.4

Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHH
Q 008025          476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----VKAYLRRGTAREMLGYYKEA  551 (580)
Q Consensus       476 ~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~lg~~~~~~g~~~~A  551 (580)
                      ...+.+.|.+.+++..+..|+..-.++..|.++...|+.++|++.+++++......    .-.++.+++++..+.+|++|
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            35677889999999999999999999999999999999999999999998654433    34688999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          552 IEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       552 ~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      .++|.+..+.+.-.+..+.++..+
T Consensus       325 ~~~f~~L~~~s~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  325 AEYFLRLLKESKWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHH
Confidence            999999999887766666665544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.69  E-value=0.11  Score=49.00  Aligned_cols=106  Identities=12%  Similarity=-0.002  Sum_probs=62.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----GSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (580)
Q Consensus       468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~  543 (580)
                      ..--+++.+..+++-|...+++..+.+.+  ..+..||.++.++    +++.+|.-.|++.-+..+-.+.....++.++.
T Consensus       141 Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l  218 (299)
T KOG3081|consen  141 ALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL  218 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH
Confidence            33445556666666666666666655433  2334444444433    24666666666666655555666666666666


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          544 MLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       544 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      .+++|++|...++.++..++++++.+.++-.+
T Consensus       219 ~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~  250 (299)
T KOG3081|consen  219 QLGRYEEAESLLEEALDKDAKDPETLANLIVL  250 (299)
T ss_pred             HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            66666666666666666666666666655433

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.67  E-value=0.035  Score=58.04  Aligned_cols=98  Identities=15%  Similarity=0.100  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      ..+.+.|..+|+.++|..+++.|...+...|.|      .....+++.||+.+.+.+.|.+.+++|=+.+|.++-..+..
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            456778899999999999999999999987765      56778999999999999999999999999999999888878


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                      -.+...-++-++|..+..+.....
T Consensus       435 ~~~~~~E~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  435 LQSFLAEDKSEEALTCLQKIKSSE  458 (872)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhhh
Confidence            788888899999999998877553

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.66  E-value=0.0075  Score=57.40  Aligned_cols=80  Identities=19%  Similarity=0.248  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      ..+....+.+....+.|+.++|...|+.++++.|.+++++...|.....-++.-+|-++|-+++.++|.|.+++.+++..
T Consensus       114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            34445566777788999999999999999999999999999999999999999999999999999999999999887643

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.61  E-value=0.027  Score=56.94  Aligned_cols=110  Identities=15%  Similarity=0.139  Sum_probs=100.6

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      +.-+...|...|.--..+++++.|...|++||..+..+...|...+.+-++..+...|...+++|+.+-|.--+.||..-
T Consensus        69 nR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~  148 (677)
T KOG1915|consen   69 NRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI  148 (677)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence            44567788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025          540 TAREMLGYYKEAIEDFSYALVLEPTNKRAS  569 (580)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  569 (580)
                      ..-..+|+...|.+.|++-++..|+.....
T Consensus       149 ymEE~LgNi~gaRqiferW~~w~P~eqaW~  178 (677)
T KOG1915|consen  149 YMEEMLGNIAGARQIFERWMEWEPDEQAWL  178 (677)
T ss_pred             HHHHHhcccHHHHHHHHHHHcCCCcHHHHH
Confidence            999999999999999999999999855433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.61  E-value=0.004  Score=39.85  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          501 YSNRAAAYLESGSFLQAEADCTKAI  525 (580)
Q Consensus       501 ~~~la~~~~~~~~~~~A~~~~~~al  525 (580)
                      |.+||.+|.++|+|++|+++|++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444555555555555555555533

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.59  E-value=0.017  Score=50.65  Aligned_cols=65  Identities=11%  Similarity=0.072  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      ....+..++..+...|++++|+..+++++..+|.+-.+|..+-.+|...|++.+|++.|++..+.
T Consensus        61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            34566778888999999999999999999999999999999999999999999999999887553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=0.092  Score=48.43  Aligned_cols=108  Identities=19%  Similarity=0.160  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC---
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN---  531 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~l~p~~---  531 (580)
                      +++-.-|-.+...++..+..+|+.++++++++..+.      +..+..+|.+|-.- .++++|+.+|+++-+-....   
T Consensus        71 hDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~  150 (288)
T KOG1586|consen   71 HDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV  150 (288)
T ss_pred             hhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence            444445555566667779999999999999987654      34456888888644 89999999999987765432   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025          532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS  569 (580)
Q Consensus       532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  569 (580)
                         -+.+...+..-..+++|.+|+..|++...-.-+|.-..
T Consensus       151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLK  191 (288)
T KOG1586|consen  151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLK  191 (288)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence               23556667777899999999999999887766655433

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.57  E-value=0.063  Score=62.33  Aligned_cols=94  Identities=17%  Similarity=0.126  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTAR  542 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~  542 (580)
                      .|..+...|.+.|++++|++.|++..+.  .|+ ...|..+...|.+.|++++|.+.+++..+.. +-+...|..+..+|
T Consensus       616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay  694 (1060)
T PLN03218        616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC  694 (1060)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            3444444455555555555555554443  222 3344455555555555555555555555432 12344555555555


Q ss_pred             HHcCCHHHHHHHHHHHHh
Q 008025          543 EMLGYYKEAIEDFSYALV  560 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~  560 (580)
                      .+.|++++|.+.|++..+
T Consensus       695 ~k~G~~eeA~~lf~eM~~  712 (1060)
T PLN03218        695 SNAKNWKKALELYEDIKS  712 (1060)
T ss_pred             HhCCCHHHHHHHHHHHHH
Confidence            555555555555555443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.042  Score=53.23  Aligned_cols=102  Identities=16%  Similarity=0.058  Sum_probs=53.1

Q ss_pred             cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (580)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~  531 (580)
                      ..++.|.+.-+++---..++.+|+...-...++|.+-. +++.+   -.+-.++.++.+.|-|++|++..++++++++.+
T Consensus       129 lL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D  208 (491)
T KOG2610|consen  129 LLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD  208 (491)
T ss_pred             HHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc
Confidence            33444445445554555555555555555555555544 33331   222234444455555555555555555555555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          532 VKAYLRRGTAREMLGYYKEAIEDFSY  557 (580)
Q Consensus       532 ~~a~~~lg~~~~~~g~~~~A~~~~~~  557 (580)
                      .-+...++.++...+++.++++..++
T Consensus       209 ~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  209 CWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             hHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            55555555555555555555555443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.014  Score=56.27  Aligned_cols=103  Identities=12%  Similarity=0.017  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----HHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----VKAYLRRG  539 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----~~a~~~lg  539 (580)
                      ....-.++..+...|-|++|.+.-++++++++.+..+.+.++-++...++++++.++..+.-..-.+.    ...|...+
T Consensus       175 sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~A  254 (491)
T KOG2610|consen  175 SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTA  254 (491)
T ss_pred             HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHH
Confidence            44444566777889999999999999999999999999999999999999999999987743322111    22466678


Q ss_pred             HHHHHcCCHHHHHHHHHHHH--hhCCCCH
Q 008025          540 TAREMLGYYKEAIEDFSYAL--VLEPTNK  566 (580)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al--~l~p~~~  566 (580)
                      ..+.+-+.|+.|++.|.+-+  +++.+|.
T Consensus       255 l~~iE~aeye~aleIyD~ei~k~l~k~Da  283 (491)
T KOG2610|consen  255 LFHIEGAEYEKALEIYDREIWKRLEKDDA  283 (491)
T ss_pred             HhhhcccchhHHHHHHHHHHHHHhhccch
Confidence            88999999999999998765  4555665

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.50  E-value=0.017  Score=57.49  Aligned_cols=93  Identities=19%  Similarity=0.225  Sum_probs=71.6

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCC--------CC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025          469 EKGNQAYKDKQWLKAISFYTEAIKLNG--------NN----------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       469 ~~g~~~~~~g~~~~Ai~~~~~al~~~p--------~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~  530 (580)
                      ..|..++++++|..|...|..+|++..        ..          ....-.+..||+.+++.+.|+++..+.|.++|.
T Consensus       181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~  260 (569)
T PF15015_consen  181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS  260 (569)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence            344555566666666666666665521        11          234567899999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      +...+...+.++..+.+|.+|...+--+.-+
T Consensus       261 ~frnHLrqAavfR~LeRy~eAarSamia~ym  291 (569)
T PF15015_consen  261 YFRNHLRQAAVFRRLERYSEAARSAMIADYM  291 (569)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998877655443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.48  E-value=0.0051  Score=39.36  Aligned_cols=29  Identities=34%  Similarity=0.397  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                      +|.++|.+|.++|+|++|+++|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57899999999999999999999966553

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.48  E-value=0.18  Score=50.88  Aligned_cols=114  Identities=13%  Similarity=0.069  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHH---ccCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCC
Q 008025          463 SAEIAKEKGNQAYK---DKQWLKAISFYTEA-IKLNGNNATYYSNRAAAYLES---------GSFLQAEADCTKAINLDK  529 (580)
Q Consensus       463 ~~~~~~~~g~~~~~---~g~~~~Ai~~~~~a-l~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~l~p  529 (580)
                      .....+..|.++.+   .|+.++|+..+.++ ....+.+++.+..+|.+|-.+         ...++|+++|.++++++|
T Consensus       178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~  257 (374)
T PF13281_consen  178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP  257 (374)
T ss_pred             chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence            44455667777777   78888888888884 444566778888888887432         236788888888888876


Q ss_pred             CC---------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          530 KN---------------------------------------------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       530 ~~---------------------------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      +.                                             .-.+-.+..+..-.|++++|.+++++++++.|.
T Consensus       258 ~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  258 DYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             cccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence            42                                             112233455566778999999999999999988


Q ss_pred             CHHHHHHHHHHH
Q 008025          565 NKRASLSADRLR  576 (580)
Q Consensus       565 ~~~~~~~l~~l~  576 (580)
                      .......+.+++
T Consensus       338 ~W~l~St~~ni~  349 (374)
T PF13281_consen  338 AWELESTLENIK  349 (374)
T ss_pred             chhHHHHHHHHH
Confidence            877776666654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.45  E-value=0.021  Score=55.79  Aligned_cols=102  Identities=19%  Similarity=0.145  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----------NATYYSNRAAAYLESGSFLQAEADCTKAINLD--  528 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--  528 (580)
                      .-+.+++..+|..+-+.+||++|+-+..++.++..+          ...+++.++.++..+|+.-.|.++++++.++.  
T Consensus       159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~  238 (518)
T KOG1941|consen  159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ  238 (518)
T ss_pred             eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            345678899999999999999999999999987433          24567889999999999999999999998873  


Q ss_pred             ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          529 ----KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       529 ----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                          +.......-+|.+|...|+.|.|..-|+++...-
T Consensus       239 ~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m  276 (518)
T KOG1941|consen  239 HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM  276 (518)
T ss_pred             hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence                2334566778999999999999999999998654

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.44  E-value=0.034  Score=44.03  Aligned_cols=65  Identities=22%  Similarity=0.166  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCC
Q 008025          483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGY  547 (580)
Q Consensus       483 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~lg~~~~~~g~  547 (580)
                      .+..+++.++.+|++..+.+.+|..++..|++++|++.+-++++.++++  ..+.-.+=.++..+|.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4677888999999999999999999999999999999999999998876  3333333334444443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.42  E-value=0.011  Score=57.74  Aligned_cols=97  Identities=19%  Similarity=0.185  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------  531 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-------  531 (580)
                      ++...+++++...+.|+++++.|+++++...++      ..++-.||..+-.+.|+++|.-+..++.++-...       
T Consensus       123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~  202 (518)
T KOG1941|consen  123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL  202 (518)
T ss_pred             hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence            456669999999999999999999999985543      3578899999999999999999999999884321       


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                         ..++|.++.++..+|+.-.|.++++++.++
T Consensus       203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence               347889999999999999999999999877

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.41  E-value=0.0048  Score=56.36  Aligned_cols=59  Identities=19%  Similarity=0.190  Sum_probs=39.6

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008025          474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (580)
Q Consensus       474 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (580)
                      ..+.++.+.|.+.|++++++.|+...-|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            44556666666677777766666666666666666666677766677777777666543

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.40  E-value=0.052  Score=55.44  Aligned_cols=95  Identities=9%  Similarity=0.081  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Q 008025          482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY-YKEAIEDFSYALV  560 (580)
Q Consensus       482 ~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~  560 (580)
                      .-...|+.++...+.|...|.+......+.+.+.+--+.|.+++..+|+++..|..-|.-.+..+. .+.|.+.|.++++
T Consensus        89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR  168 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR  168 (568)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence            345677888888888888888777666666678888888999999999999988888888777775 8888889999999


Q ss_pred             hCCCCHHHHHHHHHHH
Q 008025          561 LEPTNKRASLSADRLR  576 (580)
Q Consensus       561 l~p~~~~~~~~l~~l~  576 (580)
                      .+|+++..|...-++.
T Consensus       169 ~npdsp~Lw~eyfrmE  184 (568)
T KOG2396|consen  169 FNPDSPKLWKEYFRME  184 (568)
T ss_pred             cCCCChHHHHHHHHHH
Confidence            9999888887665553

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.37  E-value=0.013  Score=55.77  Aligned_cols=66  Identities=26%  Similarity=0.284  Sum_probs=61.9

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025          509 LESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR  574 (580)
Q Consensus       509 ~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  574 (580)
                      .+.|+.++|...|+.+++++|++++++..+|.....-++.-+|-++|-+++.+.|.|..++.+.++
T Consensus       127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            467999999999999999999999999999999999999999999999999999999999877654

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.36  E-value=0.13  Score=59.78  Aligned_cols=96  Identities=11%  Similarity=-0.026  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKNVKAYLRRGTA  541 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~lg~~  541 (580)
                      ..|..+-..|.+.|++++|++.|++..+.+ +.+...|..+...|.+.|++++|++.|++..+.  .| +...|..+..+
T Consensus       580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a  658 (1060)
T PLN03218        580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDV  658 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Confidence            345555556666666666666666666554 334556666666666666666666666666554  33 24456666666


Q ss_pred             HHHcCCHHHHHHHHHHHHhh
Q 008025          542 REMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l  561 (580)
                      |.+.|++++|.+.+++..+.
T Consensus       659 ~~k~G~~eeA~~l~~eM~k~  678 (1060)
T PLN03218        659 AGHAGDLDKAFEILQDARKQ  678 (1060)
T ss_pred             HHhCCCHHHHHHHHHHHHHc
Confidence            66666666666666666654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.35  E-value=0.038  Score=56.61  Aligned_cols=109  Identities=17%  Similarity=0.093  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL-DKKNVKAYLRRGT  540 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~l-~p~~~~a~~~lg~  540 (580)
                      ..+...+|++..+.|+.++|++.|...++..|.  +...+.+|..+++.+++|.++...+.|-=++ -|+.+...|..+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            344567999999999999999999999998776  5679999999999999999999988885433 2566777777777


Q ss_pred             HHHHcC-C---------------HHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025          541 AREMLG-Y---------------YKEAIEDFSYALVLEPTNKRASLSA  572 (580)
Q Consensus       541 ~~~~~g-~---------------~~~A~~~~~~al~l~p~~~~~~~~l  572 (580)
                      +..+.. +               -..|.+.+.+|.+.+|-.+.-+...
T Consensus       339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~  386 (539)
T PF04184_consen  339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM  386 (539)
T ss_pred             HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence            654421 1               2347789999999999877655443

The molecular function of this protein is uncertain.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.35  E-value=0.044  Score=51.27  Aligned_cols=91  Identities=21%  Similarity=0.166  Sum_probs=67.1

Q ss_pred             HccCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCC------CHHHH
Q 008025          476 KDKQWLKAISFYTEAIKL----NGN---NATYYSNRAAAYLESGS-------FLQAEADCTKAINLDKK------NVKAY  535 (580)
Q Consensus       476 ~~g~~~~Ai~~~~~al~~----~p~---~~~~~~~la~~~~~~~~-------~~~A~~~~~~al~l~p~------~~~a~  535 (580)
                      ....+++|++.|.-|+--    ...   -+..+..+|++|..+++       +.+|.+.|+++++....      .....
T Consensus        89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            445667777777666642    111   25678899999999998       45677777777765432      35688


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                      |.+|.+..++|++++|.++|.+++.......
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999999998755443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.34  E-value=0.11  Score=48.34  Aligned_cols=103  Identities=18%  Similarity=0.091  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KKN  531 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-----p~~  531 (580)
                      .+..|..-+..|...++|++|..++.++.+-..++      +.++-.-+....++..+.++..+|+++..+.     |+-
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt  109 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT  109 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence            34455666777777888999999999988655444      3455566667777888889999999988874     333


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008025          532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN  565 (580)
Q Consensus       532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  565 (580)
                      +..-..++-=..+.-+.++|++.|++++.+-.++
T Consensus       110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen  110 AAMALEKAAKALENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence            3333334444456678888999998888774443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.29  E-value=0.0064  Score=36.94  Aligned_cols=31  Identities=42%  Similarity=0.562  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      +++++|.++..++++++|+.+|+++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4455555555555555555555555555443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.24  E-value=0.25  Score=44.78  Aligned_cols=101  Identities=18%  Similarity=0.071  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHH---
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVK---  533 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~~~---  533 (580)
                      ..-..+..+|+.|.+.|++++|++.|.++.+....   -.+.++++-.+.+..+++.....+..++-.+-.  .+..   
T Consensus        34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n  113 (177)
T PF10602_consen   34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN  113 (177)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            44578899999999999999999999998876543   246778888888999999999999999877632  2222   


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          534 -AYLRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       534 -a~~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                       .....|..+...++|.+|.+.|-.+..-.
T Consensus       114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  114 RLKVYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence             23345778888999999999987765443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.20  E-value=0.041  Score=61.90  Aligned_cols=109  Identities=10%  Similarity=-0.073  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~  543 (580)
                      .+..+-..+.+.|+.++|.+.|++..+..+-  +...|..+...|.+.|++++|.+.+++. ...| +...|..+..++.
T Consensus       428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~  505 (697)
T PLN03081        428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACR  505 (697)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHH
Confidence            3444555555566666666666655543211  2245666666777777777777766553 2233 4556777777888


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          544 MLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       544 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      ..|+++.|+..+++.++++|++...+..+..+.
T Consensus       506 ~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y  538 (697)
T PLN03081        506 IHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLY  538 (697)
T ss_pred             HcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence            888888888888888888888776666665543

>PLN03077 Protein ECB2; Provisional

Probab=96.19  E-value=0.072  Score=61.49  Aligned_cols=104  Identities=9%  Similarity=-0.028  Sum_probs=48.4

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008025          470 KGNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY  547 (580)
Q Consensus       470 ~g~~~~~~g~~~~Ai~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~  547 (580)
                      +-..+.+.|++++|.++|++..+..+  -+...|..+..++.+.|++++|.+.+++. .+.|+ ...|..+-.++..-++
T Consensus       595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~  672 (857)
T PLN03077        595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRH  672 (857)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC
Confidence            33445555555555555555442211  12244455555555555555555555442 23332 3334444334444445


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          548 YKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       548 ~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      .+.++...+++++++|++...+..+..+
T Consensus       673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~  700 (857)
T PLN03077        673 VELGELAAQHIFELDPNSVGYYILLCNL  700 (857)
T ss_pred             hHHHHHHHHHHHhhCCCCcchHHHHHHH
Confidence            5555555555555555555444444433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.19  E-value=0.06  Score=49.62  Aligned_cols=104  Identities=15%  Similarity=0.095  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----
Q 008025          465 EIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-----  532 (580)
Q Consensus       465 ~~~~~~g~~~~~~-g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~-----  532 (580)
                      .-+..+|.+|-.. .++++||.+|+++-+....+      -.++...+...-.+++|.+|+..|++.....-+|.     
T Consensus       114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys  193 (288)
T KOG1586|consen  114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYS  193 (288)
T ss_pred             hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhH
Confidence            4456677777766 78889999999888764432      23455556666678899999999998877655543     


Q ss_pred             -HH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025          533 -KA-YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  568 (580)
Q Consensus       533 -~a-~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  568 (580)
                       +- ++.-|.|+....+.-.+...+++..+++|...+.
T Consensus       194 ~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  194 AKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence             23 3455788888788888999999999999976543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.18  E-value=0.094  Score=60.99  Aligned_cols=99  Identities=16%  Similarity=0.053  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------H
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------V  532 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~  532 (580)
                      ......++..++..|++++|...++++++..+..     ..++..+|.++...|++++|...++++++.....      .
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~  531 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL  531 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            3445568889999999999999999999865442     2456789999999999999999999999874321      3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          533 KAYLRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                      .++.++|.++...|++++|.+.+++++++.
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            466788999999999999999999999873

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.17  E-value=0.1  Score=59.58  Aligned_cols=113  Identities=12%  Similarity=-0.054  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRRGTA  541 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~lg~~  541 (580)
                      ...|..+..+|.+-.++++|.+.|+..++.-.+....|..++..++.+++-++|...+.+|++.-|.  +.+....-+++
T Consensus      1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            3456667778888889999999999999887788889999999999999999999999999998887  67777888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      -++.|+-+.++..|+-.+.-+|...+.|..+-.+.
T Consensus      1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred             HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence            89999999999999999999999888888776554

>smart00028 TPR Tetratricopeptide repeats

Probab=96.14  E-value=0.0085  Score=36.34  Aligned_cols=32  Identities=31%  Similarity=0.368  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~  530 (580)
                      .+++.+|.++..++++++|+.+++++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35667777777777777777777777776664

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.13  E-value=0.0065  Score=61.37  Aligned_cols=83  Identities=22%  Similarity=0.243  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----h----C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-----L----N---------GNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~-----~----~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  524 (580)
                      ....|.++|.++++.+.|.-++.+|.++++     +    .         ....+..||.|..|+..|+...|.++|.++
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a  361 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA  361 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence            456778999999999999999999999996     1    1         124678999999999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHc
Q 008025          525 INLDKKNVKAYLRRGTAREML  545 (580)
Q Consensus       525 l~l~p~~~~a~~~lg~~~~~~  545 (580)
                      .+..-.++..|.+++.+....
T Consensus       362 v~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  362 VHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHhcCcHHHHHHHHHHHHH
Confidence            999999999999999987643

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.13  E-value=0.0076  Score=58.47  Aligned_cols=90  Identities=20%  Similarity=0.071  Sum_probs=80.3

Q ss_pred             HHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025          442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC  521 (580)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  521 (580)
                      .......++..+...+..+|..+..+-.++.++++.++...|+..|..+++++|+...-|-.++.+...+|++.+|..++
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl  205 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL  205 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence            33445556666777888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCC
Q 008025          522 TKAINLDKKN  531 (580)
Q Consensus       522 ~~al~l~p~~  531 (580)
                      ..+++++-+.
T Consensus       206 ~~a~kld~dE  215 (377)
T KOG1308|consen  206 ALACKLDYDE  215 (377)
T ss_pred             HHHHhccccH
Confidence            9999998643

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.045  Score=50.69  Aligned_cols=74  Identities=18%  Similarity=0.177  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      .....+.+...++++.++|-++++.....+..+|.+..+|+.+|.++...=+.++|..++.++++++|.-..+-
T Consensus       228 ~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  228 MITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             hhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence            44567788999999999999999999999999999999999999999999999999999999999999765543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.07  E-value=0.13  Score=52.31  Aligned_cols=100  Identities=15%  Similarity=0.078  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      ..+..|...|....++.+...|.+.+-.++.+.|.+. ..-..-..-.++++++.+.+.|++-|+-.|.+..+|...|..
T Consensus       402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl  480 (677)
T KOG1915|consen  402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL  480 (677)
T ss_pred             hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence            4466777777777788888888888888888777763 222333444567778888888888888888888888877777


Q ss_pred             HHHcCCHHHHHHHHHHHHhhC
Q 008025          542 REMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~  562 (580)
                      -..+|+.+.|...|+-|++..
T Consensus       481 E~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  481 ETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHHhhhHHHHHHHHHHHhcCc
Confidence            777777777777777766554

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.05  E-value=0.09  Score=61.14  Aligned_cols=101  Identities=12%  Similarity=-0.006  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----  530 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----  530 (580)
                      ....+..+|..++..|++++|...+++++++...        ....+..+|.+++..|++++|.+.+++++.+...    
T Consensus       530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~  609 (903)
T PRK04841        530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ  609 (903)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence            3456778899999999999999999999986321        2334667899999999999999999999886332    


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          531 -NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       531 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                       ...++..++.++...|++++|.+.++++..+..
T Consensus       610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence             345677789999999999999999999987643

>PLN03077 Protein ECB2; Provisional

Probab=95.96  E-value=0.066  Score=61.81  Aligned_cols=101  Identities=13%  Similarity=0.017  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVKAYLR  537 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~~~a~~~  537 (580)
                      .+...|..+...|.+.|+.++|++.|++..+.  .|+.. .+..+-.++.+.|++++|.++|++..+..+  -+...|..
T Consensus       552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~  630 (857)
T PLN03077        552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC  630 (857)
T ss_pred             CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            45567888888888888888888888887764  46554 444555667788888888888888774422  14467788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      +..+|.+.|++++|.+.+++. .+.|+
T Consensus       631 lv~~l~r~G~~~eA~~~~~~m-~~~pd  656 (857)
T PLN03077        631 VVDLLGRAGKLTEAYNFINKM-PITPD  656 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence            888888888888888888764 34555

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.87  E-value=0.013  Score=53.66  Aligned_cols=61  Identities=23%  Similarity=0.318  Sum_probs=56.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025          507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  567 (580)
Q Consensus       507 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  567 (580)
                      ...+.++.+.|.+.|.+++++-|++...|+++|....+.|+++.|.+.|++.++++|.+..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            4456789999999999999999999999999999999999999999999999999998753

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.82  E-value=0.16  Score=53.09  Aligned_cols=114  Identities=19%  Similarity=-0.024  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHcCCCCHHHHHHH-
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA-EADCTKAINLDKKNVKAYLRR-  538 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~l~p~~~~a~~~l-  538 (580)
                      ++-.-..+ +...+...++...+.-.....+..+|+++.++.+|+.+....+....+ .++.+.+.+..|++......+ 
T Consensus        65 ~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  143 (620)
T COG3914          65 PELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLI  143 (620)
T ss_pred             HHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHH
Confidence            33333344 677777888998999999999999999999999999999887765554 455555999999998876666 


Q ss_pred             -----HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          539 -----GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       539 -----g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                           +..+..+++..++...++++.++.|+++.+...+-..
T Consensus       144 ~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         144 RFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence                 8888999999999999999999999998776665444

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.60  E-value=0.17  Score=47.59  Aligned_cols=116  Identities=14%  Similarity=0.031  Sum_probs=95.7

Q ss_pred             cchhchHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHcCCCCHH
Q 008025          456 NTFNQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKNVK  533 (580)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~-g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~l~p~~~~  533 (580)
                      .+..+|.+-.+|..+-.++... .+..+-++++...++-+|++...|+.+-.+...++++. .=++.+++++..+..|..
T Consensus        69 ~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYH  148 (318)
T KOG0530|consen   69 AIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYH  148 (318)
T ss_pred             HHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchh
Confidence            3455677777777666666554 46788888999999999999999999988888888887 778899999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  571 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  571 (580)
                      +|..+-.+....+.|++-+++..+.++.+-.|-.+|+.
T Consensus       149 aWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~  186 (318)
T KOG0530|consen  149 AWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQ  186 (318)
T ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhe
Confidence            99999999998999999999999999888777777653

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.59  E-value=0.08  Score=41.90  Aligned_cols=60  Identities=15%  Similarity=0.082  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHH
Q 008025          517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN--KRASLSADRLR  576 (580)
Q Consensus       517 A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~  576 (580)
                      .+..+++.++.+|++..+.+.+|..+...|++++|++.+-..++.+++.  ..+...+-.+-
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f   68 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIF   68 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999998765  45555444443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.58  E-value=0.4  Score=44.70  Aligned_cols=94  Identities=18%  Similarity=0.139  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------H
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------V  532 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~  532 (580)
                      +..+.+.+........+.++..+|+|+..+.     |+.+..-...+-=..+..+.++|++.|++++.+-...      .
T Consensus        71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~  150 (308)
T KOG1585|consen   71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAF  150 (308)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            3444455555555666666666666666652     3322223333333445556666666666666553221      1


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          533 KAYLRRGTAREMLGYYKEAIEDFSY  557 (580)
Q Consensus       533 ~a~~~lg~~~~~~g~~~~A~~~~~~  557 (580)
                      +.+-..+.+|.+.++|++|-..+.+
T Consensus       151 el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  151 ELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             HHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            2233344555555555555554443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.50  E-value=0.15  Score=42.80  Aligned_cols=80  Identities=8%  Similarity=0.030  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDK---QWLKAISFYTEAIK-LNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g---~~~~Ai~~~~~al~-~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      .+..++++..+.+..   +.++.|..++..++ -.|. .-++.|.|+..++++++|++++++++..++.+|+|.++.-..
T Consensus        32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            345567777776544   46788999999996 4444 457889999999999999999999999999999999887665


Q ss_pred             HHHHH
Q 008025          539 GTARE  543 (580)
Q Consensus       539 g~~~~  543 (580)
                      -.+..
T Consensus       112 ~~ied  116 (149)
T KOG3364|consen  112 ETIED  116 (149)
T ss_pred             HHHHH
Confidence            44443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=0.095  Score=49.90  Aligned_cols=76  Identities=16%  Similarity=0.211  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      ....++=..+.+.++++.|....++.+.++|+++.-+..+|.+|.++|.+.-|+++++..++..|+.+.+-.-+..
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            3344455667777888888888888888888888888888888888888888888888888888887776655443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.46  E-value=0.34  Score=49.29  Aligned_cols=118  Identities=18%  Similarity=0.110  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C------
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLD-K------  529 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p------  529 (580)
                      ......+...+....+.|+++.|...+.++...++.    .+...+..+......|+..+|++.+++.++.. .      
T Consensus       143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~  222 (352)
T PF02259_consen  143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI  222 (352)
T ss_pred             hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence            355677888888888999999998888888876421    46777888888888888888888888877710 0      


Q ss_pred             ---------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          530 ---------------------------KNVKAYLRRGTAREML------GYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       530 ---------------------------~~~~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                                                 ...++++.+|.....+      ++++++.+.|+++++++|+...++..++...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~  302 (352)
T PF02259_consen  223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN  302 (352)
T ss_pred             cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence                                       0134667777777777      7888889999999999998888888777765


Q ss_pred             hh
Q 008025          577 KV  578 (580)
Q Consensus       577 ~~  578 (580)
                      ..
T Consensus       303 ~~  304 (352)
T PF02259_consen  303 DK  304 (352)
T ss_pred             HH
Confidence            43

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.38  E-value=0.07  Score=57.57  Aligned_cols=117  Identities=29%  Similarity=0.406  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLES--GSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~--~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      ..+......++.+++.++|..+.-.|..++.+-|.+    .....+.+.||+.+  ++|..++..++-+++..|...+++
T Consensus        51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~L  130 (748)
T KOG4151|consen   51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKAL  130 (748)
T ss_pred             HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHH
Confidence            345566779999999999999999999999988843    45677888888755  689999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +.++.+|...++++-|.+.+.-....+|++.++...+.+++..
T Consensus       131 l~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l  173 (748)
T KOG4151|consen  131 LKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL  173 (748)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence            9999999999999999999999999999998887766666544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.17  E-value=0.4  Score=55.09  Aligned_cols=112  Identities=12%  Similarity=0.015  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      +....|..++..++++.+-++|...+.+|++--|.  +.+....-+..-++.|+.+.+...|+..+.-+|.....|.-+.
T Consensus      1562 q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1562 QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred             chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence            46678999999999999999999999999999888  7888899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025          540 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  573 (580)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  573 (580)
                      ..-.+.++.+..+..|++++.+.=.-..+...+.
T Consensus      1642 d~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1642 DMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred             HHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence            9999999999999999999988655444444433

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=95.02  E-value=0.051  Score=52.04  Aligned_cols=75  Identities=12%  Similarity=0.159  Sum_probs=37.3

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN-RAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      +.+...|...+..-.+.|-|.+--..|.+++.++|.+.+.|.. -+.-+...++++.+...+.++++++|+++..|
T Consensus       104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw  179 (435)
T COG5191         104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW  179 (435)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence            3444455555555555555555555555555555555554433 22223344455555555555555555555444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.92  E-value=0.48  Score=40.78  Aligned_cols=86  Identities=9%  Similarity=-0.114  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~  543 (580)
                      ...+.+.........+.+++...+...--+.|+.+..-..-|++++..|+|.+|+..+++..+-.+..+.+.-.++.|++
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~   89 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN   89 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence            34555566666668999999999998888999999999999999999999999999999999988888888888999999


Q ss_pred             HcCCHH
Q 008025          544 MLGYYK  549 (580)
Q Consensus       544 ~~g~~~  549 (580)
                      -+|+.+
T Consensus        90 al~Dp~   95 (153)
T TIGR02561        90 AKGDAE   95 (153)
T ss_pred             hcCChH
Confidence            999854

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.89  E-value=0.95  Score=45.80  Aligned_cols=104  Identities=15%  Similarity=0.004  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHcCCCCHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLE---SGSFLQAEADCTK-AINLDKKNVKA  534 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~l~p~~~~a  534 (580)
                      ..+...++=..|...++|+.-++..+..-.+    -++.....+.+|.++.+   .|+.++|++.+.. ..+..+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            4456667777888899999999998887666    45567788889999988   8999999999999 55566788899


Q ss_pred             HHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCH
Q 008025          535 YLRRGTAREML---------GYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       535 ~~~lg~~~~~~---------g~~~~A~~~~~~al~l~p~~~  566 (580)
                      +..+|.+|..+         ...++|+.+|+++.+++|+..
T Consensus       220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y  260 (374)
T PF13281_consen  220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY  260 (374)
T ss_pred             HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence            99999987543         347899999999999997643

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=94.85  E-value=0.79  Score=45.29  Aligned_cols=110  Identities=24%  Similarity=0.106  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCC
Q 008025          462 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESG-------SFLQAEADCTKAINLDK  529 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~l~p  529 (580)
                      ..+...+.+|..+..    ..|+.+|...|.++.+..... ....+.++.+|..-.       +...|+..|.++-... 
T Consensus       107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-  185 (292)
T COG0790         107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-  185 (292)
T ss_pred             ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence            345677778888887    569999999999999885544 355888998887641       3347999999988876 


Q ss_pred             CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          530 KNVKAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       530 ~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                       +..+.+++|.+|..    ..++++|..+|+++-+...  ..+...++.+
T Consensus       186 -~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~  232 (292)
T COG0790         186 -NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLM  232 (292)
T ss_pred             -CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence             78899999988865    3489999999999999876  6666666633

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.85  E-value=0.062  Score=35.25  Aligned_cols=29  Identities=24%  Similarity=0.307  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      .+++++|.+|..+|++++|++++++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            34556666666666666666666666554

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.72  E-value=0.48  Score=44.62  Aligned_cols=125  Identities=11%  Similarity=0.017  Sum_probs=105.9

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~-~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (580)
                      ..-+.++|++-+.|..+-.+.-..|++. .-++...+.+..+.++.-+|..+-++...-+.|+.=+.+..+.|+.|-.|-
T Consensus       102 ~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN  181 (318)
T KOG0530|consen  102 DEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN  181 (318)
T ss_pred             HHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence            4456678899999998888888888888 889999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          533 KAYLRRGTAREML------GYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       533 ~a~~~lg~~~~~~------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .+|..+=.+....      -..+.-+.+..+.+++.|+|..+|..|..+.+.
T Consensus       182 SAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~  233 (318)
T KOG0530|consen  182 SAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL  233 (318)
T ss_pred             chhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence            8888764443332      235667788899999999999999999988764

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.55  E-value=0.25  Score=47.07  Aligned_cols=79  Identities=24%  Similarity=0.277  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ....++=..|...++++.|..+.++.+.++|.++.-+--.|.+|.++|.+.-|++.++..++..|+++.+.....++.+
T Consensus       182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~~  260 (269)
T COG2912         182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLLE  260 (269)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            3445566677888999999999999999999999999999999999999999999999999999999988877766654

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.42  E-value=0.45  Score=47.80  Aligned_cols=99  Identities=18%  Similarity=0.116  Sum_probs=83.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC----HHHHH
Q 008025          479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY----YKEAI  552 (580)
Q Consensus       479 ~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~----~~~A~  552 (580)
                      ..++-+.+...+++.+|+...+|+.+.+++.+...  +..=++.++++++.||.|..+|..+-.+..+...    ..+-+
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El  169 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL  169 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence            66788889999999999999999999999987764  6788999999999999999998777666655443    57778


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          553 EDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       553 ~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++..+++.-++.|-.+|.+...+.+
T Consensus       170 ~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  170 EFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHH
Confidence            8899999999999999988777655

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.42  E-value=0.091  Score=34.41  Aligned_cols=31  Identities=29%  Similarity=0.290  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                      ..++.++|.+|..+|++++|++++++++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3578999999999999999999999999764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.29  E-value=0.76  Score=40.32  Aligned_cols=81  Identities=15%  Similarity=-0.072  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ..+..+..+-.+.++.+++...+...-.+.|+.+..-..-|..+...|++.+|+..|+...+-.|..+.+...+..+.+.
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            45677777888889999999999999999999999999999999999999999999999999999999998888887654


Q ss_pred             h
Q 008025          579 F  579 (580)
Q Consensus       579 ~  579 (580)
                      +
T Consensus        91 ~   91 (160)
T PF09613_consen   91 L   91 (160)
T ss_pred             c
Confidence            3

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.15  E-value=0.97  Score=45.37  Aligned_cols=108  Identities=7%  Similarity=-0.106  Sum_probs=82.3

Q ss_pred             ccchhchHHHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025          455 TNTFNQKQSAEIAKEKGNQAYKDKQ------------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT  522 (580)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~------------~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  522 (580)
                      .....+|.+.+.|..+....-..-.            .+.-+..|++|++.+|++...+..+-.+..+.-+.++..+-++
T Consensus        10 ~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we   89 (321)
T PF08424_consen   10 RRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWE   89 (321)
T ss_pred             HHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            3445567777777776655543322            4567888999999999999999998889999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhC
Q 008025          523 KAINLDKKNVKAYLRRGTARE---MLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       523 ~al~l~p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~l~  562 (580)
                      +++..+|++...|..+-....   ..-.+++....|.++++.-
T Consensus        90 ~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L  132 (321)
T PF08424_consen   90 ELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRAL  132 (321)
T ss_pred             HHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            999999999988765533322   2346788888888887653

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=94.14  E-value=1  Score=45.29  Aligned_cols=92  Identities=8%  Similarity=-0.067  Sum_probs=78.8

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008025          484 ISFYTEAIKLNGNNATYYSNRAAAYLESGS------------FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA  551 (580)
Q Consensus       484 i~~~~~al~~~p~~~~~~~~la~~~~~~~~------------~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A  551 (580)
                      ...|++.++.+|++.+.|..+....-.+-.            .+.-+..|++||+.+|++...+..+=.+..+..+-++-
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l   84 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL   84 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            456889999999999999999877765543            45678899999999999999888887888888899999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          552 IEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       552 ~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      .+-+++++..+|++...|..+-..
T Consensus        85 ~~~we~~l~~~~~~~~LW~~yL~~  108 (321)
T PF08424_consen   85 AKKWEELLFKNPGSPELWREYLDF  108 (321)
T ss_pred             HHHHHHHHHHCCCChHHHHHHHHH
Confidence            999999999999999988766543

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.95  E-value=0.27  Score=39.32  Aligned_cols=56  Identities=18%  Similarity=0.145  Sum_probs=35.3

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          473 QAYKDKQWLKAISFYTEAIKLNGNN---------ATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       473 ~~~~~g~~~~Ai~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      ...+.++|.+|++.+.+..+.....         ..+..+++.++...|++++|++.+++++++-
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3456777777777777766653221         2445666666667777777777777766663

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.92  E-value=1.5  Score=43.74  Aligned_cols=104  Identities=16%  Similarity=0.037  Sum_probs=76.6

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGNN---ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVK  533 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p~~---~~~~~~la~~~~~-~~~~~~A~~~~~~al~l~p~~~~  533 (580)
                      |.-..++...=......|||+.|++..+...+.   .++-   ..+-..-+.+-.. .-+...|..+..+++++.|+...
T Consensus       185 p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvP  264 (531)
T COG3898         185 PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVP  264 (531)
T ss_pred             cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccch
Confidence            344445555556677899999999998877653   2221   1222222222222 23688899999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      +-..-+.+|++.|+..++-..++.+.+.+|.
T Consensus       265 aav~AAralf~d~~~rKg~~ilE~aWK~ePH  295 (531)
T COG3898         265 AAVVAARALFRDGNLRKGSKILETAWKAEPH  295 (531)
T ss_pred             HHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence            9999999999999999999999999999875

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.90  E-value=5  Score=39.37  Aligned_cols=115  Identities=12%  Similarity=0.036  Sum_probs=83.2

Q ss_pred             hHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CCC----------CHHHHHHHHHHHHHcCCHH---HHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKL----NGN----------NATYYSNRAAAYLESGSFL---QAEADCT  522 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~----~p~----------~~~~~~~la~~~~~~~~~~---~A~~~~~  522 (580)
                      ..-++.+|+.|...++++ +|++|+..++++.+.    ...          ....+..++.+|++.+.++   +|.+..+
T Consensus        32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~  111 (278)
T PF08631_consen   32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALR  111 (278)
T ss_pred             HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            466789999999999999 999999999999987    221          1457889999999988765   4555555


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Q 008025          523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP-TNKRASLSADRL  575 (580)
Q Consensus       523 ~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~l~~l  575 (580)
                      .+-...|+.+..++..=.++.+.++.+++.+.+.+.+.--+ .+......+..+
T Consensus       112 ~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i  165 (278)
T PF08631_consen  112 LLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI  165 (278)
T ss_pred             HHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            55556787777774444444457889999999998887654 334444444444

It is also involved in sporulation [].

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=93.79  E-value=0.31  Score=55.38  Aligned_cols=105  Identities=19%  Similarity=0.149  Sum_probs=83.3

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESG-------SFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~-------~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      ...-++++..+.|++|+..|++.-.--|..   .++.+..|.+.+++-       .+.+|+.-|++. .-.|.-+--|..
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  557 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLG  557 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHh
Confidence            345678889999999999999998887764   578888898887552       366777777663 335666777899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  573 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  573 (580)
                      .|.+|.++|+|+|-+++|.-|++..|+.|..-....
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  593 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD  593 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence            999999999999999999999999999876544433

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.78  E-value=0.25  Score=51.43  Aligned_cols=76  Identities=16%  Similarity=0.088  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      ...++++..++-+-..+|-..+.+++.+....+-.++.+|..|+.+.+.+.|++.++.|++++|+++..-..+-.+
T Consensus       644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            3567899999999899999999999999988899999999999999999999999999999999998866555433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.70  E-value=1.1  Score=45.38  Aligned_cols=102  Identities=22%  Similarity=0.075  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CC-C--------------------------------CHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NG-N--------------------------------NATYYSNRAAAY  508 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p-~--------------------------------~~~~~~~la~~~  508 (580)
                      .+...+..+..+...|+..+|+..++..+.. .. .                                ...++..+|...
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            5677888999999999999999999888871 10 0                                134566667666


Q ss_pred             HHc------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q 008025          509 LES------GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYY-----------------KEAIEDFSYALVLEPT  564 (580)
Q Consensus       509 ~~~------~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~-----------------~~A~~~~~~al~l~p~  564 (580)
                      ..+      ++++++++.|.++++++|++.++|+.+|..+.+.-+.                 ..|+.+|-+++.+.++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            677      7889999999999999999999999999887655322                 4488899999999887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.39  E-value=1  Score=49.14  Aligned_cols=97  Identities=15%  Similarity=0.070  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHH----------HhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAI----------KLNGN----------NATYYSNRAAAYLESGSFLQAEADCTK  523 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al----------~~~p~----------~~~~~~~la~~~~~~~~~~~A~~~~~~  523 (580)
                      -..|++.+..+...+|.+.|+++|+|+-          .-+|.          +...|..-|......|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            4578999999999999999999999853          22332          456777788888889999999998887


Q ss_pred             HHHc---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008025          524 AINL---------------------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV  560 (580)
Q Consensus       524 al~l---------------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  560 (580)
                      |-..                     ...+-.+-|.+|.-|...|++.+|+..|-+|..
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            6543                     234666889999999999999999998877653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.29  E-value=0.84  Score=41.21  Aligned_cols=69  Identities=19%  Similarity=0.070  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (580)
                      ..-+-..++.+.+++|++++|+..++....-+ -.+.....+|.++..+|+-++|...|+++++.+++..
T Consensus       125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         125 KALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            34455679999999999999999987653321 1234567899999999999999999999999985443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.20  E-value=1.3  Score=48.20  Aligned_cols=104  Identities=18%  Similarity=0.120  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHc----c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          466 IAKEKGNQAYKD----K-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       466 ~~~~~g~~~~~~----g-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      +.+.+|.+|.+.    . ++..|+.+|.++-++.  ++.+.+.+|.+|..-.   ++..|.++|.+|.+.  .+..+.++
T Consensus       290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~  365 (552)
T KOG1550|consen  290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYR  365 (552)
T ss_pred             cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHH
Confidence            566788888874    3 7899999999998875  4568888999998766   678999999998874  57889999


Q ss_pred             HHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          538 RGTAREML----GYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       538 lg~~~~~~----g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      ++.+|..=    .+.+.|..+++++-+.+  ++.+...++.+
T Consensus       366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~  405 (552)
T KOG1550|consen  366 LALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAF  405 (552)
T ss_pred             HHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHH
Confidence            99998643    37899999999999988  44444444443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.14  E-value=1.6  Score=42.09  Aligned_cols=77  Identities=8%  Similarity=-0.064  Sum_probs=55.8

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHH----------------------------------HHHHhCCCCHH
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT----------------------------------EAIKLNGNNAT  499 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~----------------------------------~al~~~p~~~~  499 (580)
                      ...+...+++..+...++.++...|+.+.|...+.                                  +.+..+|++..
T Consensus       158 ~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~  237 (304)
T COG3118         158 KQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVE  237 (304)
T ss_pred             HHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHH
Confidence            33344445556666667777777777755555433                                  22345899999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~  530 (580)
                      +-+.++..|...|++++|.+++-..++.+-+
T Consensus       238 aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         238 AALALADQLHLVGRNEAALEHLLALLRRDRG  268 (304)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999888887654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=93.12  E-value=1.3  Score=46.95  Aligned_cols=102  Identities=20%  Similarity=0.069  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHH---HHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK--KNVK---AYLR  537 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--~~~~---a~~~  537 (580)
                      ....|...+...-..|-++.....|++.+++.--.+..-.|.|..+.+..-|+++.+.|++.+.+.+  +-.+   .|..
T Consensus       476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt  555 (835)
T KOG2047|consen  476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT  555 (835)
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence            3456777788888888999999999999999888888889999988888889999999999999864  3333   3444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      .....+.--+.+.|...|++|++..|.
T Consensus       556 kfi~rygg~klEraRdLFEqaL~~Cpp  582 (835)
T KOG2047|consen  556 KFIKRYGGTKLERARDLFEQALDGCPP  582 (835)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence            455555556889999999999999884

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=93.12  E-value=0.96  Score=34.29  Aligned_cols=65  Identities=17%  Similarity=0.226  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY---SNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      .+....+.|..++++.+.++|+....++++..++..+.+   -.+..+|...|+|++.+++..+=+++
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567788888888999999999999998877765444   44556677888888887776554443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.10  E-value=2.6  Score=39.39  Aligned_cols=78  Identities=17%  Similarity=0.057  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          462 QSAEIAKEKGNQAYKDKQW-------LKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~-------~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      ..+..+..+|..+...++.       .+|++.|.++++....      .....+.+|.++.++|++++|.++|.+++...
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            5667777788888877775       4555556665554322      35788999999999999999999999999875


Q ss_pred             CCCH-HHHHHHH
Q 008025          529 KKNV-KAYLRRG  539 (580)
Q Consensus       529 p~~~-~a~~~lg  539 (580)
                      ..+. ..+..++
T Consensus       196 ~~s~~~~l~~~A  207 (214)
T PF09986_consen  196 KASKEPKLKDMA  207 (214)
T ss_pred             CCCCcHHHHHHH
Confidence            4433 2444444

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=93.06  E-value=0.77  Score=46.77  Aligned_cols=77  Identities=19%  Similarity=0.185  Sum_probs=49.9

Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------------------CCC---HHHHHHHHHH
Q 008025          491 IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--------------------------KKN---VKAYLRRGTA  541 (580)
Q Consensus       491 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--------------------------p~~---~~a~~~lg~~  541 (580)
                      ++.+|.+.+.+..++.++..+|+++.|.+.+++||=..                          +.|   ..+.++....
T Consensus        33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~  112 (360)
T PF04910_consen   33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS  112 (360)
T ss_pred             HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence            45567777777777777777777777777776664330                          111   2255556666


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCC-CHH
Q 008025          542 REMLGYYKEAIEDFSYALVLEPT-NKR  567 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~p~-~~~  567 (580)
                      +.+.|.+.-|.++++-.+.++|. |+.
T Consensus       113 L~~RG~~rTAlE~~KlLlsLdp~~DP~  139 (360)
T PF04910_consen  113 LGRRGCWRTALEWCKLLLSLDPDEDPL  139 (360)
T ss_pred             HHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence            77777777777777777777776 553

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.95  E-value=1.2  Score=48.40  Aligned_cols=112  Identities=20%  Similarity=0.071  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYK-----DKQWLKAISFYTEAIKL-----NGNNATYYSNRAAAYLESG-----SFLQAEADCTKAIN  526 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~-----~g~~~~Ai~~~~~al~~-----~p~~~~~~~~la~~~~~~~-----~~~~A~~~~~~al~  526 (580)
                      .+....+.+|.+++.     .+|.++|+.+|..+.+.     .-.++.+.+.+|.+|.+..     +++.|+.+|.++-+
T Consensus       242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~  321 (552)
T KOG1550|consen  242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE  321 (552)
T ss_pred             cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence            344556666766654     47899999999999771     1125668899999998853     78889999999988


Q ss_pred             cCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          527 LDKKNVKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       527 l~p~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +.  ++.+.+.+|.++..-.   ++..|.++|..|.+.  .+..+...++.+..
T Consensus       322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~  371 (552)
T KOG1550|consen  322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYE  371 (552)
T ss_pred             cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHH
Confidence            65  5678899999998665   678999999988865  46677777776654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.83  E-value=0.77  Score=46.69  Aligned_cols=59  Identities=12%  Similarity=0.090  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK  523 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  523 (580)
                      .......|..++.+|+|.++.-+-....+..| ++.++..+|.|.+...+|++|.+++.+
T Consensus       462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~  520 (549)
T PF07079_consen  462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK  520 (549)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            44455677888889999999988888888888 788888999999999999998888855

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.82  E-value=0.52  Score=37.67  Aligned_cols=57  Identities=23%  Similarity=0.297  Sum_probs=46.9

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          507 AYLESGSFLQAEADCTKAINLDKK---------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       507 ~~~~~~~~~~A~~~~~~al~l~p~---------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                      -..+.++|.+|++.+.+.+.....         ...+..++|.++...|++++|.+.+++++++..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            345789999999988888776321         245788899999999999999999999998854

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.79  E-value=1.3  Score=45.46  Aligned_cols=95  Identities=20%  Similarity=0.042  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCH
Q 008025          462 QSAEIAKEKGNQAY-KDKQWLKAISFYTEAIKLN---GNN----ATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNV  532 (580)
Q Consensus       462 ~~~~~~~~~g~~~~-~~g~~~~Ai~~~~~al~~~---p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~  532 (580)
                      -++....++|..++ ..++++.|..+++++..+.   |+.    ..+...|+.+|.+.. .+..+...+++++++..+++
T Consensus        44 veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p  123 (629)
T KOG2300|consen   44 VEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP  123 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence            34455566666554 3466777777777776653   222    345566777777666 56677777777777765544


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHH
Q 008025          533 ----KAYLRRGTAREMLGYYKEAIEDFS  556 (580)
Q Consensus       533 ----~a~~~lg~~~~~~g~~~~A~~~~~  556 (580)
                          +..+.++..+.-..++.-|.+.+.
T Consensus       124 ~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen  124 YWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             hhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence                344556666766777777766643

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.27  E-value=2.5  Score=43.47  Aligned_cols=98  Identities=19%  Similarity=0.075  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-N--ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------  531 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~--~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-------  531 (580)
                      ..+..++.+|.....-+.|++|...|..++++-.. +  +.+..|+|..|+..++-+.-.+.++.   +.|.|       
T Consensus       365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq  441 (629)
T KOG2300|consen  365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQ  441 (629)
T ss_pred             hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHH
Confidence            45678888999999999999999999999987544 2  45667899999998876543333332   34442       


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                         ..++|..|.-.+.++++.||+..+++.+++.
T Consensus       442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence               4478888999999999999999999999986

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.09  E-value=0.25  Score=31.84  Aligned_cols=28  Identities=32%  Similarity=0.373  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          500 YYSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       500 ~~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      ++..||.+.+..++|++|+++|++++++
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444555555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=91.86  E-value=5.2  Score=40.33  Aligned_cols=116  Identities=16%  Similarity=0.097  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCC--CC
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NG---NNATYYSNRAAAYLESGSFLQAEADCTKAIN--LDK--KN  531 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--l~p--~~  531 (580)
                      -.+..|+.+...+-..++...-...+...+..   ..   ..+...+.|-.+|+..+.|++|.+...+..-  ...  .+
T Consensus       167 i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~  246 (493)
T KOG2581|consen  167 IAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEW  246 (493)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHH
Confidence            34667778888888888877666666655543   21   1245667788889999999999888877652  222  23


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +...|.+|.+..-+.+|..|.++|-+|+...|+ ..+.-..+++.+.
T Consensus       247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq-~~alGf~q~v~k~  292 (493)
T KOG2581|consen  247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ-HAALGFRQQVNKL  292 (493)
T ss_pred             HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc-hhhhhHHHHHHHH
Confidence            455677899999999999999999999999998 4455555555443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=91.59  E-value=0.63  Score=45.53  Aligned_cols=62  Identities=21%  Similarity=0.116  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       483 Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      |+.+|.+|+.+.|++...|+.+|.++...++.-+|+-+|-|++-...-++.+..|+...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999998766678899999888887

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=91.56  E-value=0.64  Score=29.55  Aligned_cols=31  Identities=19%  Similarity=0.169  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCC
Q 008025          534 AYLRRGTAREMLGYYKEAIED--FSYALVLEPT  564 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~--~~~al~l~p~  564 (580)
                      .++.+|..+...|++++|++.  |+-+..+++.
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            445555555555555555555  3345444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.49  E-value=1.1  Score=43.36  Aligned_cols=66  Identities=14%  Similarity=0.036  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      ....++.+++..+...++++.+++.+++.+..+|.+-..|..+-..|++.|+...|+..|++.-++
T Consensus       151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            445678889999999999999999999999999999999999999999999999999999987774

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.47  E-value=3  Score=42.59  Aligned_cols=51  Identities=16%  Similarity=0.091  Sum_probs=46.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025          507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA  558 (580)
Q Consensus       507 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  558 (580)
                      .++..|+|.++.-+..-..++.| ++.+|-.+|.+++...+|++|-.++++.
T Consensus       471 yLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  471 YLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            34688999999999999999999 9999999999999999999999998654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.33  E-value=6.7  Score=34.84  Aligned_cols=109  Identities=11%  Similarity=-0.021  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--N--ATYYSNRAAAYLESGSFLQAEADCTKA-INLDKKNVKAYLR  537 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~--~~~~~~la~~~~~~~~~~~A~~~~~~a-l~l~p~~~~a~~~  537 (580)
                      ..-+.+..+.+..++|+-+.|+..|..+-.-.|-  -  -.+...-+.+++..|.|++-....+.. -..+|-...+.-.
T Consensus        93 pvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEA  172 (221)
T COG4649          93 PVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREA  172 (221)
T ss_pred             hHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHH
Confidence            3456677899999999999999999987654332  1  234556677778889999866655442 2224444667788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  572 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l  572 (580)
                      ||.+-++.|++.+|.+.|++... +.+.+....+.
T Consensus       173 LglAa~kagd~a~A~~~F~qia~-Da~aprnirqR  206 (221)
T COG4649         173 LGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQR  206 (221)
T ss_pred             HhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHH
Confidence            99999999999999999998877 44444433333

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.30  E-value=0.34  Score=31.22  Aligned_cols=30  Identities=27%  Similarity=0.339  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          533 KAYLRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                      ..|..+|.+-...++|++|++.|++++++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=91.23  E-value=2.1  Score=45.60  Aligned_cols=109  Identities=15%  Similarity=0.135  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------------------NATYYSNRAAAYLESGSFLQAEADCTK  523 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------------------~~~~~~~la~~~~~~~~~~~A~~~~~~  523 (580)
                      +-+.+|.+.|...++..+++.|++..+++...-..                  +...|..++...-..|-++.....|++
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr  502 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR  502 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            55789999999999999999999999998865211                  245677778888888999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHH
Q 008025          524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP--TNKRASL  570 (580)
Q Consensus       524 al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~  570 (580)
                      .|.+.---++.-.|.|..+.+..-+++|.+.|++.+.+.+  .-.+.|+
T Consensus       503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~  551 (835)
T KOG2047|consen  503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWN  551 (835)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHH
Confidence            9999999999999999999999999999999999999964  4455555

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=91.21  E-value=0.69  Score=45.27  Aligned_cols=62  Identities=21%  Similarity=0.116  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       517 A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      |+.+|.+|+.+.|++...|+.+|.++...++.=+|+-+|-+++...--.+.+..+|..+-+.
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999997766668888888876554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.16  E-value=2.9  Score=36.13  Aligned_cols=81  Identities=14%  Similarity=-0.107  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ..+......-...++.+++...+...--+.|+.+..-..-|.++...|++.+|...|+...+-.+..+.+...+..+.+.
T Consensus        11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            34555566666789999999999998889999999999999999999999999999999999988888888888777654


Q ss_pred             h
Q 008025          579 F  579 (580)
Q Consensus       579 ~  579 (580)
                      +
T Consensus        91 l   91 (153)
T TIGR02561        91 K   91 (153)
T ss_pred             c
Confidence            3

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=91.04  E-value=2.3  Score=45.64  Aligned_cols=88  Identities=10%  Similarity=0.094  Sum_probs=69.1

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      .++....+++.+.|..+.....|++|.++|.+.-        ..-++..||+.+++|++    ++...+.-|++.+.+-.
T Consensus       790 ~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~--------~~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~  857 (1189)
T KOG2041|consen  790 DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG--------DTENQIECLYRLELFGE----LEVLARTLPEDSELLPV  857 (1189)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------chHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHH
Confidence            3345567789999999999999999999998862        34467788888888887    44444455778888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHH
Q 008025          538 RGTAREMLGYYKEAIEDFSY  557 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~  557 (580)
                      +|..+...|.-++|.++|-+
T Consensus       858 ~a~mf~svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  858 MADMFTSVGMCDQAVEAYLR  877 (1189)
T ss_pred             HHHHHHhhchHHHHHHHHHh
Confidence            89999899988888888754

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.63  E-value=3.7  Score=41.13  Aligned_cols=97  Identities=11%  Similarity=-0.032  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      .+-++...++..+-.|+|+.|.+.|+-.+. +|+.- --+..|-.-...+|+.+.|+++.+++-+.-|.-+-++...=..
T Consensus       119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~  197 (531)
T COG3898         119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA  197 (531)
T ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence            345566678888888999999999886653 34321 1112222223467888999999999999998888777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHh
Q 008025          542 REMLGYYKEAIEDFSYALV  560 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~  560 (580)
                      ....|+++.|++..+...+
T Consensus       198 r~~~gdWd~AlkLvd~~~~  216 (531)
T COG3898         198 RCAAGDWDGALKLVDAQRA  216 (531)
T ss_pred             HHhcCChHHHHHHHHHHHH
Confidence            7888999999888876554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.56  E-value=3.1  Score=38.00  Aligned_cols=77  Identities=13%  Similarity=0.032  Sum_probs=58.0

Q ss_pred             HHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHcCCHH
Q 008025          475 YKDKQWLKAISFYTEAIKL-NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----NVKAYLRRGTAREMLGYYK  549 (580)
Q Consensus       475 ~~~g~~~~Ai~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----~~~a~~~lg~~~~~~g~~~  549 (580)
                      ..+-.-++|...|-++-.. .=++++..+.||..|. ..|.+++++.+.+++++...    |++.+..|+.++.++++++
T Consensus       117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            3343445677776654432 1246888888887765 77899999999999998543    5889999999999999999


Q ss_pred             HHH
Q 008025          550 EAI  552 (580)
Q Consensus       550 ~A~  552 (580)
                      +|-
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            884

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=90.47  E-value=1.6  Score=45.12  Aligned_cols=74  Identities=12%  Similarity=0.078  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKAYL  536 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~~~a~~  536 (580)
                      +...|........+.+.|.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.++|+.+|+++..|.
T Consensus       104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~  178 (568)
T KOG2396|consen  104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK  178 (568)
T ss_pred             CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence            556777777777777779999999999999999999999988888888776 89999999999999999988664

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.28  E-value=0.38  Score=27.99  Aligned_cols=23  Identities=26%  Similarity=0.001  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFS  556 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~  556 (580)
                      +++++|.++..+|++++|+..++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34455555555555555554443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.23  E-value=1  Score=28.67  Aligned_cols=20  Identities=20%  Similarity=0.268  Sum_probs=9.4

Q ss_pred             HHHHHHHHHHccCHHHHHHH
Q 008025          467 AKEKGNQAYKDKQWLKAISF  486 (580)
Q Consensus       467 ~~~~g~~~~~~g~~~~Ai~~  486 (580)
                      ++.+|..+..+|+|++|++.
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHH
Confidence            34444455555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.80  E-value=0.43  Score=27.73  Aligned_cols=24  Identities=25%  Similarity=0.007  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCT  522 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~  522 (580)
                      .+++++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            355667777777777777766654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=89.78  E-value=2.1  Score=34.97  Aligned_cols=72  Identities=19%  Similarity=0.188  Sum_probs=57.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q 008025          504 RAAAYLESGSFLQAEADCTKAINLDKKNV---KAYLRRGTAREMLGY-----------YKEAIEDFSYALVLEPTNKRAS  569 (580)
Q Consensus       504 la~~~~~~~~~~~A~~~~~~al~l~p~~~---~a~~~lg~~~~~~g~-----------~~~A~~~~~~al~l~p~~~~~~  569 (580)
                      ++.-++..|++-+|++..+..+..++++.   ..+...|.+++++..           +-.|+++|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            56778899999999999999999988776   445556887765542           4678999999999999988777


Q ss_pred             HHHHHH
Q 008025          570 LSADRL  575 (580)
Q Consensus       570 ~~l~~l  575 (580)
                      ..++.-
T Consensus        82 ~~la~~   87 (111)
T PF04781_consen   82 FELASQ   87 (111)
T ss_pred             HHHHHH
Confidence            777653

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=89.74  E-value=0.57  Score=45.17  Aligned_cols=89  Identities=11%  Similarity=0.056  Sum_probs=57.7

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008025          487 YTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR-RGTAREMLGYYKEAIEDFSYALVLEPTN  565 (580)
Q Consensus       487 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~-lg~~~~~~g~~~~A~~~~~~al~l~p~~  565 (580)
                      |.++-..-++++..|...+..-.+.+.|.+--..|.++++.+|.|.+.|.. .+.=+...++++.+...|++++.++|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            334444556666666666666666666777777777777777777776655 4445566667777777777777777777


Q ss_pred             HHHHHHHHHH
Q 008025          566 KRASLSADRL  575 (580)
Q Consensus       566 ~~~~~~l~~l  575 (580)
                      +..|...-++
T Consensus       176 p~iw~eyfr~  185 (435)
T COG5191         176 PRIWIEYFRM  185 (435)
T ss_pred             chHHHHHHHH
Confidence            7666655444

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.63  E-value=7  Score=39.61  Aligned_cols=112  Identities=13%  Similarity=0.051  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHHHHcCCCCHH
Q 008025          467 AKEKGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLES------------GSFLQAEADCTKAINLDKKNVK  533 (580)
Q Consensus       467 ~~~~g~~~~~~g~~~-~Ai~~~~~al~~~p~~~~~~~~la~~~~~~------------~~~~~A~~~~~~al~l~p~~~~  533 (580)
                      .+..-....+.|.|+ ++++.=.+.+..+|+...+|+.+=.++...            ...++-+.....+++.+|+..-
T Consensus        31 ~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~  110 (421)
T KOG0529|consen   31 LFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYG  110 (421)
T ss_pred             HHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHH
Confidence            344444455566664 577778888889999888887666555322            2355667888899999999999


Q ss_pred             HHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          534 AYLRRGTAREMLG--YYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       534 a~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|+.+..++.+..  ++..-++.++++++.+|.|-.+|.+...+...
T Consensus       111 aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~  157 (421)
T KOG0529|consen  111 AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ  157 (421)
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHH
Confidence            9999999999877  46888999999999999999888877665443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=89.56  E-value=6.6  Score=38.49  Aligned_cols=96  Identities=16%  Similarity=0.076  Sum_probs=71.4

Q ss_pred             HHHccCHHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc----CC---C-------
Q 008025          474 AYKDKQWLKAISFYTEAIKLN----GNN----ATYYSNRAAAYLESG-SFLQAEADCTKAINL----DK---K-------  530 (580)
Q Consensus       474 ~~~~g~~~~Ai~~~~~al~~~----p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~l----~p---~-------  530 (580)
                      ..++||++.|..+|.|+-.+.    |+.    +..+|+.|...++.+ ++++|..++++++++    ..   .       
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            357899999999999987765    222    467888898899999 999999999999988    21   1       


Q ss_pred             CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhhCCCCHHHH
Q 008025          531 NVKAYLRRGTAREMLGYYK---EAIEDFSYALVLEPTNKRAS  569 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~---~A~~~~~~al~l~p~~~~~~  569 (580)
                      ....+..++.+|...+.++   +|...++.+-.-.|+.+..+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence            1346777888898887654   45555556666677766666

It is also involved in sporulation [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=89.25  E-value=3.8  Score=39.74  Aligned_cols=65  Identities=22%  Similarity=0.136  Sum_probs=60.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      ...++..++..+...++++.+++.+++.+.++|-+-.+|..+=.+|+..|+...|+..|++.-++
T Consensus       152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            35678889999999999999999999999999999999999999999999999999999998874

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=89.18  E-value=0.77  Score=46.87  Aligned_cols=100  Identities=9%  Similarity=0.102  Sum_probs=60.4

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 008025          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY  547 (580)
Q Consensus       468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~  547 (580)
                      ...+.++...|+|+++...+..+-..-..-..+...+-....+++++++|....+-.+.-.-..++..---+.....++-
T Consensus       327 ~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~  406 (831)
T PRK15180        327 QLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQL  406 (831)
T ss_pred             HHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhH
Confidence            34555666666666666665554443333333444444555566666666666666655555555554444555566777


Q ss_pred             HHHHHHHHHHHHhhCCCCHH
Q 008025          548 YKEAIEDFSYALVLEPTNKR  567 (580)
Q Consensus       548 ~~~A~~~~~~al~l~p~~~~  567 (580)
                      ++++.-++++.+.++|....
T Consensus       407 ~d~~~~~wk~~~~~~~~~~~  426 (831)
T PRK15180        407 FDKSYHYWKRVLLLNPETQS  426 (831)
T ss_pred             HHHHHHHHHHHhccCChhcc
Confidence            88888888888888876443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=89.13  E-value=4.6  Score=42.69  Aligned_cols=94  Identities=19%  Similarity=0.023  Sum_probs=76.9

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025          479 QWLKAISFYTEAIKLNGNNATYYSN--RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS  556 (580)
Q Consensus       479 ~~~~Ai~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  556 (580)
                      .-.-++..+...+.+++.+++.+..  +...+...++...+......++..+|++..++.+++.++...|....+...+.
T Consensus        46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~  125 (620)
T COG3914          46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS  125 (620)
T ss_pred             chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence            3344777777777888888876443  47777788899899999999999999999999999999988887666666655


Q ss_pred             H-HHhhCCCCHHHHHHH
Q 008025          557 Y-ALVLEPTNKRASLSA  572 (580)
Q Consensus       557 ~-al~l~p~~~~~~~~l  572 (580)
                      + +.+..|++......+
T Consensus       126 ~~a~~~~~~~~~~~~~~  142 (620)
T COG3914         126 EIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             HHHHhcCcchHHHHhhH
Confidence            5 999999999888887

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.92  E-value=1.9  Score=28.84  Aligned_cols=24  Identities=21%  Similarity=0.095  Sum_probs=13.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYAL  559 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al  559 (580)
                      +.++.+|..+|+++.|.+.+++.+
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHH
Confidence            345555555555555555555555

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=88.55  E-value=4.2  Score=30.90  Aligned_cols=62  Identities=15%  Similarity=0.033  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH---HHHHHHcCCHHHHHHHHHHHHhh
Q 008025          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR---GTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l---g~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      -....|.=++...+.++|+..++++++..++...-+..+   ..+|...|+|++.+++..+=+++
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556667788999999999999999988877655555   56688999999998886655443

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.39  E-value=16  Score=35.87  Aligned_cols=84  Identities=23%  Similarity=0.085  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---------
Q 008025          480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG---------  546 (580)
Q Consensus       480 ~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g---------  546 (580)
                      ..+|+..|.++-...  +..+.+++|.+|..    ..++++|..+|.++-+...  ..+.++++ +++..|         
T Consensus       171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~  245 (292)
T COG0790         171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL  245 (292)
T ss_pred             HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence            347999999988776  78899999988865    3489999999999999886  88999999 776666         


Q ss_pred             ------CHHHHHHHHHHHHhhCCCCHHH
Q 008025          547 ------YYKEAIEDFSYALVLEPTNKRA  568 (580)
Q Consensus       547 ------~~~~A~~~~~~al~l~p~~~~~  568 (580)
                            +...|..++.++..+.+.....
T Consensus       246 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~  273 (292)
T COG0790         246 TAAKEEDKKQALEWLQKACELGFDNACE  273 (292)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCChhHHH
Confidence                  8889999999998887655443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.37  E-value=12  Score=33.84  Aligned_cols=66  Identities=14%  Similarity=0.082  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       498 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                      ..++..+|..|.+.|++++|++.|.++.+..-..   ...++++-.+....+++.....++.++-.+-.
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE  104 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence            4688999999999999999999999988765332   45677778888899999999999999987743

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=87.91  E-value=1.2  Score=46.03  Aligned_cols=79  Identities=14%  Similarity=-0.036  Sum_probs=65.2

Q ss_pred             ccccchhchHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008025          453 LSTNTFNQKQSAEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (580)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p  529 (580)
                      +.......+.....+.+++.++++.   |+--.|+....++++++|....+|+.|+.++.+++++.+|+++...+....|
T Consensus       397 ~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~P  476 (758)
T KOG1310|consen  397 YSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFP  476 (758)
T ss_pred             HHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCc
Confidence            3344445566677777888888764   5667788899999999999999999999999999999999999988888888


Q ss_pred             CC
Q 008025          530 KN  531 (580)
Q Consensus       530 ~~  531 (580)
                      .+
T Consensus       477 td  478 (758)
T KOG1310|consen  477 TD  478 (758)
T ss_pred             hh
Confidence            44

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=87.53  E-value=6.2  Score=32.62  Aligned_cols=65  Identities=14%  Similarity=0.024  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIK-------LNGNNAT----YYSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~-------~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      ++..+-.++..+...|+|++++..-.++|.       ++.+...    +-++++.++-.+|+.++|++.|+.+-+.
T Consensus        54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            455666788899999999988877666664       5555443    4578999999999999999999988764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.52  E-value=5.2  Score=42.63  Aligned_cols=73  Identities=12%  Similarity=-0.013  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKK------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  571 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  571 (580)
                      ..+.+-|.-+++..+|..++++|...++--|.      .++..-+++.||..+.+.+.|.++++.|-+.+|.++-....
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~  433 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL  433 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            45567788889999999999999999988664      36788889999999999999999999999999988755443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.18  E-value=7.9  Score=39.46  Aligned_cols=107  Identities=11%  Similarity=-0.075  Sum_probs=80.9

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C----CH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-NAT-YYSNRAAAYLESGSFLQAEADCTKAINLDK-K----NV  532 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-~~~-~~~~la~~~~~~~~~~~A~~~~~~al~l~p-~----~~  532 (580)
                      |..--.+++.....+.++|-+..|++..+-.+.++|. |+- +.+.+=...++.++|+--++.++....... +    -+
T Consensus        99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP  178 (360)
T PF04910_consen   99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP  178 (360)
T ss_pred             chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc
Confidence            3344556677788888999999999999999999999 654 344444445677888877777777655211 1    23


Q ss_pred             HHHHHHHHHHHHcCCH---------------HHHHHHHHHHHhhCCCCH
Q 008025          533 KAYLRRGTAREMLGYY---------------KEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       533 ~a~~~lg~~~~~~g~~---------------~~A~~~~~~al~l~p~~~  566 (580)
                      ..-|..+.+++.+++-               ++|.+.+++|+...|.-.
T Consensus       179 n~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl  227 (360)
T PF04910_consen  179 NFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL  227 (360)
T ss_pred             cHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence            5668889999999988               999999999999987643

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]

Probab=87.18  E-value=22  Score=31.96  Aligned_cols=110  Identities=18%  Similarity=0.025  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCC
Q 008025          462 QSAEIAKEKGNQAYK-----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-------SFLQAEADCTKAINLDK  529 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~-----~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~l~p  529 (580)
                      ..+...+..|+..+.     .++...|++.|..+-.  -+.+.+..++|.++..-.       +..+|++++.++..++ 
T Consensus        66 ~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~-  142 (248)
T KOG4014|consen   66 SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE-  142 (248)
T ss_pred             CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC-
Confidence            344566777877763     5678999999998876  466788888888875332       3778999999998875 


Q ss_pred             CCHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          530 KNVKAYLRRGTAREML------------------------GYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       530 ~~~~a~~~lg~~~~~~------------------------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                       +..+-++|...|..-                        .+.+.|.++--++-+++  ++.+-.++.++.+
T Consensus       143 -~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyk  211 (248)
T KOG4014|consen  143 -DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYK  211 (248)
T ss_pred             -CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHH
Confidence             344555555444333                        56778888877777764  4555555555543

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.89  E-value=15  Score=37.27  Aligned_cols=96  Identities=19%  Similarity=0.119  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C----CCH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD----K----KNV  532 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~----p----~~~  532 (580)
                      -.++..+|..|...|+++.|++.|.++-....+.   ...+.++-.+-..+++|..-..+-.++.+.-    .    -.+
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~  229 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA  229 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence            4577889999999999999999999966554332   4566777777788999988887777776651    0    123


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          533 KAYLRRGTAREMLGYYKEAIEDFSYAL  559 (580)
Q Consensus       533 ~a~~~lg~~~~~~g~~~~A~~~~~~al  559 (580)
                      +.....|.+...+++|..|.++|-.+.
T Consensus       230 kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  230 KLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            466777888888999999999986654

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=86.52  E-value=4.9  Score=44.17  Aligned_cols=62  Identities=21%  Similarity=0.114  Sum_probs=47.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHcCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          498 ATYYSNRAAAYLESGSFLQAEADCTKA----------INLDK----------KNVKAYLRRGTAREMLGYYKEAIEDFSY  557 (580)
Q Consensus       498 ~~~~~~la~~~~~~~~~~~A~~~~~~a----------l~l~p----------~~~~a~~~lg~~~~~~g~~~~A~~~~~~  557 (580)
                      ...|++.+.-+...+|.+.|+++|+|+          |+-+|          .+...|...|.-+...|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            356888888888999999999999874          22244          2445677788889999999999998876


Q ss_pred             HH
Q 008025          558 AL  559 (580)
Q Consensus       558 al  559 (580)
                      |-
T Consensus       938 A~  939 (1416)
T KOG3617|consen  938 AK  939 (1416)
T ss_pred             hh
Confidence            64

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=86.45  E-value=14  Score=41.31  Aligned_cols=100  Identities=15%  Similarity=0.063  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--  531 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--  531 (580)
                      .+......+.....+.+|++|.....++...-+.         .....-..|.+....+++++|++..+.+++.=|.+  
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~  493 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY  493 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence            3445566788888999999999999988776544         24556677888889999999999999999987654  


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                         ..++...|.+..-.|++++|..+.+++.++.
T Consensus       494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a  527 (894)
T COG2909         494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMA  527 (894)
T ss_pred             hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence               4578889999999999999999999999883

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=86.21  E-value=12  Score=36.83  Aligned_cols=55  Identities=11%  Similarity=-0.114  Sum_probs=24.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          503 NRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTAREMLGYYKEAIEDFSY  557 (580)
Q Consensus       503 ~la~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~  557 (580)
                      .|+.|..++|+..+|++.++...+-.|-.  ...+-|+-.++.++.-|.+....+-+
T Consensus       280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak  336 (556)
T KOG3807|consen  280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK  336 (556)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555555555555555555544444411  12333444444444444444333333

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=86.13  E-value=15  Score=38.02  Aligned_cols=98  Identities=14%  Similarity=0.104  Sum_probs=76.3

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008025          470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK  549 (580)
Q Consensus       470 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~  549 (580)
                      --......|+...|-.....+++..|.++......+.+..++|+|+.+.+.+.-+-++-..-.++..-+-..+..+++++
T Consensus       295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~  374 (831)
T PRK15180        295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWR  374 (831)
T ss_pred             HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHH
Confidence            34455678999999999999999999999999999999999999999999887665543333344444556677899999


Q ss_pred             HHHHHHHHHHhhCCCCHH
Q 008025          550 EAIEDFSYALVLEPTNKR  567 (580)
Q Consensus       550 ~A~~~~~~al~l~p~~~~  567 (580)
                      +|....+..+.-+-++++
T Consensus       375 ~a~s~a~~~l~~eie~~e  392 (831)
T PRK15180        375 EALSTAEMMLSNEIEDEE  392 (831)
T ss_pred             HHHHHHHHHhccccCChh
Confidence            998888777765544444

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.85  E-value=2.8  Score=38.27  Aligned_cols=57  Identities=19%  Similarity=0.194  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNRAAAYLESGSFLQAEA  519 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~  519 (580)
                      +.++..+.+|..|. +.|.++++..|.+++++...    +++.+..|+.+|++++++++|.-
T Consensus       139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AYi  199 (203)
T PF11207_consen  139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAYI  199 (203)
T ss_pred             CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence            45667777887765 78999999999999999654    58999999999999999999853

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=85.79  E-value=2.3  Score=49.05  Aligned_cols=105  Identities=13%  Similarity=0.042  Sum_probs=88.0

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--  527 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--  527 (580)
                      ..+++.+..+..++..+.+.+++++|+..-.++.-+        .|+....+.+++...+..++...|+..+.++.++  
T Consensus       967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen  967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL 1046 (1236)
T ss_pred             hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc
Confidence            346777888999999999999999999998777643        3456778899999999999999999999998887  


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          528 ------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       528 ------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                            .|.-.....+++.++...++++.|+.+++.|++..
T Consensus      1047 Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1047 LSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             cccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence                  35555667888999999999999999999999854

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=85.72  E-value=62  Score=35.75  Aligned_cols=113  Identities=16%  Similarity=0.041  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008025          462 QSAEIAKEKGNQAY-KDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----  530 (580)
Q Consensus       462 ~~~~~~~~~g~~~~-~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----  530 (580)
                      .++...+.+|.+++ ...+++.|..+++|++.+...+      ..+.+.++.+|.+.+... |.+.+++.|+...+    
T Consensus        57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~  135 (608)
T PF10345_consen   57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS  135 (608)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence            56888999999999 5688999999999998886432      234567788888888777 99999999998655    


Q ss_pred             CHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHH
Q 008025          531 NVKAYLRR--GTAREMLGYYKEAIEDFSYALVLE--PTNKRASLSADRL  575 (580)
Q Consensus       531 ~~~a~~~l--g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~l~~l  575 (580)
                      ...-.+++  ...+...+++..|.+.++....+.  ..++.+...+.-+
T Consensus       136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~  184 (608)
T PF10345_consen  136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS  184 (608)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence            22222222  222223379999999999999886  4666665554443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=84.35  E-value=6.4  Score=38.69  Aligned_cols=100  Identities=16%  Similarity=0.107  Sum_probs=76.2

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025          478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKNVKAYLRRGTAREMLGYYKEAIEDF  555 (580)
Q Consensus       478 g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~~  555 (580)
                      -+|..-...|+-.....|+ +.+-.|++.+.-+..-.+.++...+.....  =.++...+-.+|..+.++|+.+||.+.|
T Consensus       310 tDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ay  388 (415)
T COG4941         310 TDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAY  388 (415)
T ss_pred             CChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHH
Confidence            4566666666665555554 566678888887777788888777766554  2356667788899999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHhh
Q 008025          556 SYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       556 ~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ++++.+.++..+......++..+
T Consensus       389 drAi~La~~~aer~~l~~r~~~l  411 (415)
T COG4941         389 DRAIALARNAAERAFLRQRLDRL  411 (415)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHh
Confidence            99999999988888777766543

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=83.97  E-value=1.8  Score=44.30  Aligned_cols=56  Identities=29%  Similarity=0.310  Sum_probs=29.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          503 NRAAAYLESGSFLQAEADCTKAINLD---------KKNVKAYLRRGTAREMLGYYKEAIEDFSYAL  559 (580)
Q Consensus       503 ~la~~~~~~~~~~~A~~~~~~al~l~---------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  559 (580)
                      .|..++.-+|||..|++.++. ++++         +.+...+|..|.+|..+++|.+|+..|.+.+
T Consensus       127 gLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  127 GLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555666666555543 2221         1233455556666666666666666665554

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=83.91  E-value=0.66  Score=45.68  Aligned_cols=79  Identities=16%  Similarity=0.012  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (580)
Q Consensus       467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~  545 (580)
                      ..+.+...++.+.+..|+..-..+++.+++...+++.++..|+.+.++++|++++..+....|++......+...-...
T Consensus       278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~  356 (372)
T KOG0546|consen  278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKK  356 (372)
T ss_pred             ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHH
Confidence            3447788888999999999988888888888999999999999999999999999999999998877655554444333

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.79  E-value=9.4  Score=42.15  Aligned_cols=32  Identities=28%  Similarity=0.403  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL  493 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~  493 (580)
                      .....+...|..++++|+|++|...|-+.+..
T Consensus       366 ~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~  397 (933)
T KOG2114|consen  366 TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF  397 (933)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence            45677888999999999999999999998853

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=83.47  E-value=9.7  Score=39.96  Aligned_cols=74  Identities=9%  Similarity=-0.013  Sum_probs=66.1

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      .+.++++|.+...|+.+-..+-.+ -+++..+.|++.+..-|..+.+|.......+..++|+..++.|.++|.--
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv   83 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV   83 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            345667899999999998888766 99999999999999999999999999999999999999999999988743

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=83.34  E-value=3.9  Score=35.29  Aligned_cols=49  Identities=14%  Similarity=0.114  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS  513 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~  513 (580)
                      +.....+...+..|+|.-|....+.++..+|++..+...++.++.+++.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            3456677788888899999999999888899888888888888876654

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=82.68  E-value=2.4  Score=28.33  Aligned_cols=27  Identities=26%  Similarity=0.233  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          501 YSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       501 ~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      .++||.+|+++|+++.|.+.++++++-
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            368999999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.39  E-value=13  Score=34.38  Aligned_cols=94  Identities=18%  Similarity=0.121  Sum_probs=65.4

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHHHHHHHHHH---
Q 008025          471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AYLRRGTAREM---  544 (580)
Q Consensus       471 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~~lg~~~~~---  544 (580)
                      ...+++.++.++||...+.-++-+|.+......+-..|.-.|+|++|...++-+-++.|++..   .|.++-.+-..   
T Consensus         8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~e   87 (273)
T COG4455           8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARNE   87 (273)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHH
Confidence            345677788888888888888888888888888888888888888888888888888887643   33333222111   


Q ss_pred             ----------c-CCHHHHHHHHHHHHhhCCC
Q 008025          545 ----------L-GYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       545 ----------~-g~~~~A~~~~~~al~l~p~  564 (580)
                                + |...+=+..+.+++.++.+
T Consensus        88 vfag~~~Pgflg~p~p~wva~L~aala~h~d  118 (273)
T COG4455          88 VFAGGAVPGFLGGPSPEWVAALLAALALHSD  118 (273)
T ss_pred             HhccCCCCCCcCCCCHHHHHHHHHHHhcccC
Confidence                      1 2455556666777777665

>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=82.27  E-value=17  Score=39.20  Aligned_cols=81  Identities=12%  Similarity=0.039  Sum_probs=47.6

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025          474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE  553 (580)
Q Consensus       474 ~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~  553 (580)
                      +.+++..+++....+.-+.-....+...+..+..+-..++.++|..+|++.+..+|+  ++++..+.-+++.|-...|..
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   95 (578)
T PRK15490         18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQL   95 (578)
T ss_pred             HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHH
Confidence            334445555555555444444444555555666666666666666666666666665  555666666666666666665


Q ss_pred             HHH
Q 008025          554 DFS  556 (580)
Q Consensus       554 ~~~  556 (580)
                      .++
T Consensus        96 ~~~   98 (578)
T PRK15490         96 ILK   98 (578)
T ss_pred             HHH
Confidence            555

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=82.19  E-value=9.3  Score=39.26  Aligned_cols=60  Identities=15%  Similarity=0.094  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNG---------NNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      ...+...+.-.|||..|++.++. ++++.         -+...++..|.+|+.+++|.+|++.|...+--
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y  193 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY  193 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34466777889999999998765 33322         24567899999999999999999999987654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.14  E-value=7.1  Score=36.09  Aligned_cols=61  Identities=13%  Similarity=0.153  Sum_probs=55.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          506 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       506 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                      .-+++.++..+|++..+.-++-+|.+......+-.+|.-.|+|++|...++-+-++.|++.
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t   69 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT   69 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence            3456778999999999999999999999998899999999999999999999999999874

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=81.72  E-value=7.6  Score=40.71  Aligned_cols=73  Identities=14%  Similarity=0.049  Sum_probs=66.5

Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          488 TEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       488 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      ++-++.+|.|.++|+.|-.-+..+ .+++..+.|++.+...|..+.+|-.........++|+.-++.|.++|.-
T Consensus        10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk   82 (656)
T KOG1914|consen   10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK   82 (656)
T ss_pred             HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            667889999999999988877555 8999999999999999999999999999999999999999999999854

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=80.91  E-value=85  Score=33.69  Aligned_cols=116  Identities=11%  Similarity=-0.001  Sum_probs=96.9

Q ss_pred             chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHH
Q 008025          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAY  535 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~  535 (580)
                      ....+.+...|..........|++....-.|++++--.....+.|...+......|+.+-|-..+.++.+.. |..+..+
T Consensus       290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~  369 (577)
T KOG1258|consen  290 KPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIH  369 (577)
T ss_pred             CcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHH
Confidence            334567778888889999999999999999999998888888999999988888899999998888888874 5566677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  572 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l  572 (580)
                      ..-+..-...|++..|...+++..+-.|+...+-...
T Consensus       370 L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~  406 (577)
T KOG1258|consen  370 LLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRK  406 (577)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHH
Confidence            7777778888999999999999998888866554433

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=80.75  E-value=7.7  Score=35.62  Aligned_cols=50  Identities=20%  Similarity=0.126  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008025          515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN  565 (580)
Q Consensus       515 ~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  565 (580)
                      +..++..++.++..| ++..+.+++.++..+|+.++|.+..+++..+.|.+
T Consensus       128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence            444556666777776 56777777888888888888888888888887743

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=80.71  E-value=4.6  Score=24.14  Aligned_cols=29  Identities=17%  Similarity=0.052  Sum_probs=16.9

Q ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          547 YYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       547 ~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      +++++...|+++++..|.+...|..+...
T Consensus         2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        2 DIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            45556666666666666666666555443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=80.55  E-value=6.2  Score=38.07  Aligned_cols=59  Identities=12%  Similarity=0.041  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  524 (580)
                      .+...+..+...|.+.+|+...++++.++|=+...+..+-..+..+||--++.++|++.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            33445666777777777777777777777777777777777777777777777666653

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=80.33  E-value=7.6  Score=37.49  Aligned_cols=61  Identities=23%  Similarity=0.168  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL  559 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  559 (580)
                      ......+..|.+.|.+.+|++.+++++.++|-+...+..+-.+|..+|+--.+.+.|++.-
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            3455667888999999999999999999999999999999999999999888888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	580
1wao_1	477	Pp5 Structure Length = 477		2e-17
2dc0_A	434	Crystal Structure Of Amidase Length = 434		5e-17
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		3e-16
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		6e-16
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-14
2df4_A	485	Structure Of Trna-Dependent Amidotransferase Gatcab		9e-14
3h0l_A	478	Structure Of Trna-Dependent Amidotransferase Gatcab		4e-13
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		6e-13
3al0_A	475	Crystal Structure Of The Glutamine Transamidosome F		4e-12
3kfu_E	471	Crystal Structure Of The Transamidosome Length = 47		8e-12
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		1e-11
3a1i_A	521	Crystal Structure Of Rhodococcus Sp. N-771 Amidase		2e-11
3a1k_A	521	Crystal Structure Of Rhodococcus Sp. N771 Amidase L		2e-11
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		3e-11
2gi3_A	476	Crystal Structure Of Glutamyl-Trna(Gln) Amidotransf		4e-11
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		6e-11
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		3e-10
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		4e-10
4gyr_A	621	Granulibacter Bethesdensis Allophanate Hydrolase Ap		5e-10
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		5e-10
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		7e-10
1m21_A	503	Crystal Structure Analysis Of The Peptide Amidase P		9e-10
3fp2_A	537	Crystal Structure Of Tom71 Complexed With Hsp82 C-T		1e-09
3lca_A	533	Structure Of Tom71 Complexed With Hsp70 Ssa1 C Term		1e-09
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		2e-09
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		4e-09
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		5e-09
1obl_A	414	Crystal Structure Of The S133a Mutant Of Malonamida		9e-08
1o9o_A	414	Crystal Structure Of The S131a Mutant Of Malonamida		9e-08
2gw1_A	514	Crystal Structure Of The Yeast Tom70 Length = 514		1e-07
1elr_A	131	Crystal Structure Of The Tpr2a Domain Of Hop In Com		2e-07
3esk_A	129	Structure Of Hop Tpr2a Domain In Complex With The N		2e-07
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		3e-07
1obk_A	414	Crystal Structure Of The R158q Mutant Of Malonamida		7e-07
1ock_A	412	The Crystal Structure Of Malonamidase E2 From Brady		7e-07
1o9n_A	414	Crystal Structure Of The K62a Mutant Of Malonamidas		8e-07
1obj_A	414	Crystal Structure Of The T150a Mutant Of Malonamida		9e-07
1o9q_A	414	Crystal Structure Of The S155c Mutant Of Malonamida		1e-06
1obi_A	414	Crystal Structure Of The G130a Mutant Of Malonamida		1e-06
3fwv_A	128	Crystal Structure Of A Redesigned Tpr Protein, T-Mo		2e-06
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-06
4gcn_A	127	N-Terminal Domain Of Stress-Induced Protein-1 (Sti-		5e-06
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		6e-06
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		7e-06
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-04
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		4e-04
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		5e-04

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D 
Sbjct: 4   KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 63
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578
           T+AI LDKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K+
Sbjct: 64  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 120

>pdb|2DC0|A Chain A, Crystal Structure Of Amidase Length = 434

Iteration: 1
 Score = 85.9 bits (211), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 144/375 (38%), Gaps = 29/375 (7%)
Query: 60  GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYS 119
           GL   V DLF ++G  T  G                    L E GA    KT   E A  
Sbjct: 67  GLPLTVKDLFPVKGMPTRAGT---KAPLPPLPEEARAVRRLREAGALLFAKTNXHEIALG 123
Query: 120 INGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILG 179
           I G N       N   PS+                +   SLG DT G +R+P+ F G++G
Sbjct: 124 ITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVG 183
Query: 180 FRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL--QLPFAAQRSPRQIIIAD 237
           F+PSYG VS  G +P+S S D  G   R  +    +  +L    +P    ++P       
Sbjct: 184 FKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGESIPLEGVQNP------- 236
Query: 238 DCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENL-GEYFDSKVPSLKGFHKTNGELKNV 296
               +  +P D +   +     K F R +     L  E  +  +P L+G ++        
Sbjct: 237 ----VFGVPLDFLEGRLGVEVRKAFTRLLEDLPALRAEVREVSLP-LEGVYEV------Y 285
Query: 297 MRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSL 356
            RL+ RYE    H + ++       P +   +   L ++E    +  + R  +R  +   
Sbjct: 286 TRLV-RYEAARIHEKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKA 344
Query: 357 LKDDGILVTPTTAYPPPKLGGKEMLSEDYQ---NRAFSLLSIA-SVSGCCQVTVPLGYYD 412
           L+    L+ P    P P LG +E+  E  +     AF  L++  S+ G   + +P    +
Sbjct: 345 LRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAKVE 404
Query: 413 KCPTSVSFIARHGGD 427
             P  +  +  +G D
Sbjct: 405 GXPVGLQVVGAYGED 419

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 68/117 (58%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D 
Sbjct: 11  KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 70
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578
           T+AI LDKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K+
Sbjct: 71  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 63/106 (59%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SAE  K  GN  YK   + KAI +Y +A++L+ NNA+ + N   AY + G + +A     
Sbjct: 8   SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           KA+ LD  N KA+ RRG A    G Y++AIED+  AL L+P N +A
Sbjct: 68  KALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113

>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 485

Iteration: 1
 Score = 75.5 bits (184), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 55/106 (51%)
Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDT 164
           A  IGK  +DEFA   +    ++    NP     +P              LV  SLG DT
Sbjct: 116 AVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDT 175
Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK 210
            G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+ K
Sbjct: 176 GGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVK 221

>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 56/108 (51%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L + GA  +GKT +DEFA   +     +    NP    ++P                  S
Sbjct: 104 LKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVS 163
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           LG DT G +R P++FCG++G +P+YG VS  G++  ++SLD +G F R
Sbjct: 164 LGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGR 211

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 61/103 (59%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           AE  K +GN+  K + +  A+ FY +AI+LN  NA Y+ NRAAAY + G++  A  DC +
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566
           AI +D    KAY R G A   L  + EA+  +  AL L+P N+
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNE 114

>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 475

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLG 161
           E G   +GK  +DEFA   +     +    NP    ++P              +V  +LG
Sbjct: 100 EAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALG 159
Query: 162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF---ARDPKILRHV 215
            DT G VR P++ CG++G++P+YG VS  G++  ++SLD +G      RD  IL  +
Sbjct: 160 SDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEI 216

>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome Length = 471

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 56/104 (53%)
Query: 104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGID 163
           GA  +GKT +DEF    +  +  +    NP  P ++P             DL   +LG D
Sbjct: 102 GALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSD 161
Query: 164 TVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           T G VR P+AFCG+ G +P+YG VS  G+I  ++SLD +G  AR
Sbjct: 162 TGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMAR 205

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A + K KGN+ ++   + +A+  YTEAIK N  +A  YSNRAA Y +   F  A  DC +
Sbjct: 16  ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM 580
            I L+   +K Y R+  A E +  Y +A++ +  AL L+ + K A   AD  ++  M
Sbjct: 76  CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA---ADGYQRCMM 129

>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase Complexed With Benzamide Length = 521

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 148/375 (39%), Gaps = 54/375 (14%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L+  GAT  GK V ++  +S +          NP    +                 VDF+
Sbjct: 128 LLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFA 187
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 219
           +G D  G +R+P+AFCG++G +P++G V + G  PI  ++D +G       I R V    
Sbjct: 188 IGGDQGGAIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTVHDAA 241
Query: 220 LQLPFAAQR---SPRQI--IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGE 274
           L L   A R    PRQ   + A D    L    D +   +++   + FG  V + E + +
Sbjct: 242 LMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVR---EGFGHAVSQPE-VDD 297
Query: 275 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN------------NHNEWIESVKPALDP 322
              +   SL     T  E+ N+   +  +   N            + N +  + +   DP
Sbjct: 298 AVRAAAHSLTEIGCTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDP 356
Query: 323 DISAE-----IGEMLEISETV------------------IENCKSIRNEMRSAISSLLKD 359
           ++ A      I     +SETV                      +++    R+A  + L+ 
Sbjct: 357 ELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQ 416
Query: 360 DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---VSGCCQVTVPLGYYDKCPT 416
             +LV PT  Y   +L  K++    +  +A  +++  +   V+G   ++VP G  +  P 
Sbjct: 417 FDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPV 476
Query: 417 SVSFIARHGGDRFLL 431
            +    RH  D  +L
Sbjct: 477 GMMITGRHFDDATVL 491

>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase Length = 521

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 148/375 (39%), Gaps = 54/375 (14%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L+  GAT  GK V ++  +S +          NP    +                 VDF+
Sbjct: 128 LLAAGATVAGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFA 187
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL 219
           +G D  G +R+P+AFCG++G +P++G V + G  PI  ++D +G       I R V    
Sbjct: 188 IGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLG------PITRTVHDAA 241
Query: 220 LQLPFAAQR---SPRQI--IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGE 274
           L L   A R    PRQ   + A D    L    D +   +++   + FG  V + E + +
Sbjct: 242 LMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVR---EGFGHAVSQPE-VDD 297
Query: 275 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKN------------NHNEWIESVKPALDP 322
              +   SL     T  E+ N+   +  +   N            + N +  + +   DP
Sbjct: 298 AVRAAAHSLTEIGCTVEEV-NIPWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDP 356
Query: 323 DISAE-----IGEMLEISETV------------------IENCKSIRNEMRSAISSLLKD 359
           ++ A      I     +SETV                      +++    R+A  + L+ 
Sbjct: 357 ELMAHFASRRIQHADALSETVKLVALTGHHGITTLGGASYGKARNLVPLARAAYDTALRQ 416
Query: 360 DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIAS---VSGCCQVTVPLGYYDKCPT 416
             +LV PT  Y   +L  K++    +  +A  +++  +   V+G   ++VP G  +  P 
Sbjct: 417 FDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGLVNGLPV 476
Query: 417 SVSFIARHGGDRFLL 431
            +    RH  D  +L
Sbjct: 477 GMMITGRHFDDATVL 491

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 56/105 (53%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A+  K KGN+ +K   +  A+  Y EA+K +  NA  YSNRAA   +   F +A  DC  
Sbjct: 13  AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            I LD K +K Y+R+      +  + +A   +  AL ++P+N+ A
Sbjct: 73  CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A Resolution Length = 476

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 102 EGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLG 161
           E G   +GK  +DEFA   +     +    NP    ++P               V  +LG
Sbjct: 101 EAGFVVVGKANLDEFAXGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGXVVAALG 160
Query: 162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF---ARDPKILRHV 215
            DT G VR P++ CG++G++P+YG VS  G++  ++SLD +G      RD  IL  +
Sbjct: 161 SDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILXEI 217

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 65.9 bits (159), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 61/107 (57%), Gaps = 3/107 (2%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEA 519
           S E  +++GN+ +K   +  A++ YT+A+ L+    + A  + NRAA +L+   + +AE 
Sbjct: 27  SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAET 86
Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566
           + +KAI  D  +VKA  RR  A E LG   +A+ D    + LEP NK
Sbjct: 87  EASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 430 LLDTVQNMYASLQEQ--ADIATK--------SKLSTNTFNQKQSAEIAKEKGNQAYKDKQ 479
           L  T++    SL E   ADI TK         K     +   + AE A+ +G + +    
Sbjct: 95  LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154
Query: 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539
           W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC KAI  D   V+AY+R+ 
Sbjct: 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214
Query: 540 TAREMLGYYKEAIE 553
           TA+  +  Y  A+E
Sbjct: 215 TAQIAVKEYASALE 228

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC 
Sbjct: 8   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561
           +A+ LD ++VKA+   G  +  +  Y EAI +   A  L
Sbjct: 68  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106

>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo Length = 621

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 60  GLSFAVSDLFDIEGYVTGFGHPEWXXXXXXXXXXXXXXXXLVEGGATCIGKTVVDEFAYS 119
           G+ FAV D  D+ G       P +                L   GA  +GKT +D+FA  
Sbjct: 97  GVPFAVKDNIDVAGLPCSAACPAFTYEPDRDATVVAR---LRAAGAIVLGKTNLDQFATG 153
Query: 120 INGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFSLGIDTVGGVRVPSAFCGILG 179
           + GT   +  P        +               LV FSLG DT G  RVP+AF  ++G
Sbjct: 154 LVGTRSPFGAPRCVFDQDYISGGSSSGSAVAVAAGLVAFSLGTDTAGSGRVPAAFNNLVG 213
Query: 180 FRPSYGAVSHMGIIPISTSLDTVGWFA 206
            +P+ G +S  G++P   SLD V  FA
Sbjct: 214 VKPTKGLLSTSGVVPACRSLDCVTVFA 240

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 52/90 (57%)
Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           AE A+ +G + +    W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC K
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
           AI  D   V+AY+R+ TA+  +  Y  A+E
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALE 93

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 56/99 (56%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC 
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561
           +A+ LD ++VKA+   G  +  +  Y EAI +   A  L
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101

>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In Complex With The Competitive Inhibitor Chymostatin Length = 503

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 100 LVEGGATCIGKTVVDEFAY-----SINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXD 154
           L + GA  +GKT + E+A      SI+G +       NP   S  P             +
Sbjct: 117 LRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAAN 176
Query: 155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFAR 207
           L   ++G +T G +  P+A  G++G +P+ G VS  GIIPIS S DT G  AR
Sbjct: 177 LASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMAR 229

>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal Fragment Length = 537

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 444 QADIATKSKLSTNTFNQKQSAEIA-KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 502
           + DIA    LS +   Q+Q+  +  K +GN  +  K + +AI +Y  AI+L+ N   +YS
Sbjct: 7   EPDIAQLKGLSPS---QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS 63
Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS 556
           N +A Y+ +G   +     TKA+ +   + KA LRR +A E LG + +A+ D S
Sbjct: 64  NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 117

>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal Tail Indicating Conformational Plasticity Length = 533

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 4/114 (3%)
Query: 444 QADIATKSKLSTNTFNQKQSAEIA-KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS 502
           + DIA    LS +   Q+Q+  +  K +GN  +  K + +AI +Y  AI+L+ N   +YS
Sbjct: 3   EPDIAQLKGLSPS---QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYS 59
Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS 556
           N +A Y+ +G   +     TKA+ +   + KA LRR +A E LG + +A+ D S
Sbjct: 60  NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS 113

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/106 (37%), Positives = 56/106 (52%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SAE     GN  YK   + +AI +Y +A++L+ NNA  + N   AY + G + +A     
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           KA+ LD  N +A+   G A    G Y EAIE +  AL L+P N  A
Sbjct: 68  KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 50/95 (52%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           K +GN A   K++ KAI  YT+A+ +   N  Y SNRAAAY  SG   +A  D   A  +
Sbjct: 15  KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562
           D K  KA+ R G AR  +  YK A E +   +  E
Sbjct: 75  DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 52/98 (53%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KEKGN+A        A+  Y+EAIKL+ +N   YSNR+AAY + G + +A  D  K ++L
Sbjct: 8   KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
                K Y R+  A E L  ++EA   +   L  E  N
Sbjct: 68  KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2 Complexed With Malonate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSAGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2 Complexed With Malonamate From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGASSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70 Length = 514

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           K+KGNQ +++K++  AI +Y  A++L   +  +YSN +A Y+  G   +     TKA+ L
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 528 DKKNVKAYLRRGTAREMLGYYKEAIEDFS 556
                K  LRR +A E LG + +A+ D S
Sbjct: 69  KPDYSKVLLRRASANEGLGKFADAMFDLS 97

>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex With The Hsp90 Peptide Meevd Length = 131

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C KAI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 528 DKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564
            ++N        KAY R G +      YK+AI  ++ +L    T
Sbjct: 68  GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The Non-Cognate Hsc70 Peptide Ligand Length = 129

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C KAI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 528 DKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564
            ++N        KAY R G +      YK+AI  ++ +L    T
Sbjct: 68  GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 53/106 (50%)
Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SAE     GN  YK   + +AI +Y +A++L  NNA  + N   AY + G + +A     
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           KA+ L   N +A+   G A    G Y EAIE +  AL L P N  A
Sbjct: 68  KALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113

>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 412

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2 From Bradyrhizobium Japonicum Length = 414

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 136/343 (39%), Gaps = 43/343 (12%)
Query: 100 LVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPXXXXXXXXXXXXXDLVDFS 159
           L   GAT IGKT    FA      ++      NP      P              ++  +
Sbjct: 94  LKRAGATIIGKTTTTAFA------SRDPTATLNPHNTGHSPGASSSGSAAAVGAGMIPLA 147
Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWF-ARDPKILRHVGHV 218
           LG  T G V  P+A+CG    +PS+  +  +G+   S +LDTVG F AR   + R +  +
Sbjct: 148 LGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAM 207
Query: 219 LLQLPFAA---QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFG--RQVLKHENLG 273
             +  F+     ++PR  ++  +    ++  A++ +Q  IK+ E+     + +   E + 
Sbjct: 208 TGRSEFSGIVPAKAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQAIDLPEAVH 267
Query: 274 EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLE 333
           E +    P ++ F                +EF  +H+E    + P L   + A +G    
Sbjct: 268 EAWRIH-PIIQDFEAHRA---------LAWEFSEHHDE----IAPMLRASLDATVG---- 309
Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLS---EDYQNRAF 390
           ++    +  + I    R  +  + +   +L+T    Y  P     + L+   +   NR +
Sbjct: 310 LTPKEYDEARRIGRRGRRELGEVFEGVDVLLT----YSAPGTAPAKALASTGDPRYNRLW 365
Query: 391 SLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT 433
           +L+      G   V VP+      P  V  IAR G D   L T
Sbjct: 366 TLM------GNPCVNVPVLKVGGLPIGVQVIARFGNDAHALAT 402

>pdb|3FWV|A Chain A, Crystal Structure Of A Redesigned Tpr Protein, T-Mod(Vmy), In Complex With Meevf Peptide Length = 128

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           KE GN AYK K +  A+  Y +A +L+  N TY  N+AA Y E G + +    C KAI +
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYIVNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 528 DKKNVK-------AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566
            ++N +       AY R G +      YK+AI  ++ +L    T K
Sbjct: 68  GRENREDYRMIAYAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPK 113

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 55/102 (53%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +SAE     GN  YK   + +AI +Y +A++L+  +A  + N   AY + G + +A    
Sbjct: 33  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92
Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
            KA+ LD ++ +A+   G A    G Y EAIE +  AL L+P
Sbjct: 93  QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134

>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 127

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           K+ GN AYK K + KA   Y +AI+L+ +N T+Y+N+AA Y E   F +    C KA+ +
Sbjct: 12  KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
Query: 528 DKKN-------VKAYLRRGTA 541
            ++         KA  R G A
Sbjct: 72  GRETRADYKLIAKAMSRAGNA 92

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 23/155 (14%)
Query: 438 YASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI------ 491
           +   +E  ++ TK KL        + A I KEKG   +K  ++++A+  Y + +      
Sbjct: 250 FEKAKESWEMDTKEKL--------EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME 301
Query: 492 -----KLNGNNATY----YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542
                K +  + ++    + N A  YL+   + +A   C KA+ LD  N K   RRG A+
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ 361
Query: 543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577
            ++  ++ A  DF   L + P NK A L     +K
Sbjct: 362 LLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 23/148 (15%)
Query: 438 YASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI------ 491
           +   +E  ++ TK KL        + A I KEKG   +K  ++++A+  Y + +      
Sbjct: 250 FEKAKESWEMDTKEKL--------EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEME 301
Query: 492 -----KLNGNNATY----YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542
                K +  + ++    + N A  YL+   + +A   C KA+ LD  N K   RRG A+
Sbjct: 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQ 361
Query: 543 EMLGYYKEAIEDFSYALVLEPTNKRASL 570
            ++  ++ A  DF   L + P NK A L
Sbjct: 362 LLMNEFESAKGDFEKVLEVNPQNKAARL 389

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 38/74 (51%)
Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIED 554
           GN+A  + N   AY + G + +A     KA+ LD  N +A+   G A    G Y EAIE 
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 555 FSYALVLEPTNKRA 568
           +  AL L+P N  A
Sbjct: 66  YQKALELDPNNAEA 79

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYT---------------EAIKL 493
            K     N+  + + + I KE+G   +K+ ++ +A+  Y                EA K 
Sbjct: 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA 191
Query: 494 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                  + N A  +L+  +F  A   C KA+ LD  N K   RRG A   +  ++ A  
Sbjct: 192 QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARA 251
Query: 554 DFSYALVLEPTNKRA----SLSADRLRK 577
           DF   L L P NK A    ++   R+R+
Sbjct: 252 DFQKVLQLYPNNKAAKTQLAVCQQRIRR 279

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 18/120 (15%)
Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEA------------------IKLNGNNATYYSN 503
           +S E  ++KGN+ +  K + +AI  Y +A                  ++L+  N   Y+N
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68
Query: 504 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
            +  YL  G   +AE   ++ +  ++ N KA  RR  AR       EA ED    L   P
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	580
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	6e-50
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	9e-50
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	1e-49
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	4e-49
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	9e-49
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-48
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-48
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	2e-47
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-47
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-46
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	7e-44
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	2e-42
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-42
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	1e-41
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-38
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	1e-37
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-37
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	3e-36
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	6e-04
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	1e-35
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-33
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	2e-33
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	4e-33
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-33
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-25
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-19
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-11
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	7e-33
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	7e-33
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-32
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-32
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-25
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-15
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-05
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	1e-31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-30
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-26
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-16
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-13
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-30
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-29
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-23
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-22
2gw1_A	514	Mitochondrial precursor proteins import receptor;	9e-20
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-27
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-20
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-19
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-18
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	4e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-24
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-21
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-20
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-18
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-17
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-16
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-21
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-20
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-20
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	1e-16
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-19
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-17
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-19
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-18
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-17
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-16
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-19
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-19
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-15
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-14
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-14
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-11
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-19
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-18
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-18
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	8e-18
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-13
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-18
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-13
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	7e-05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-18
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-18
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	9e-17
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-14
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-18
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-16
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-18
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	9e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-12
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-17
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-12
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-16
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-11
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-15
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-14
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-13
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-16
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-14
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-12
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-15
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-15
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-12
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	2e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-14
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-13
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-12
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-11
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-14
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-13
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-11
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-14
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-13
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	9e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-05
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	4e-13
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-13
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-13
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-12
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	8e-11
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	9e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-10
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-08
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-11
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-11
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	6e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-11
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-11
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-07
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-10
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-08
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-07
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-10
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-10
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-09
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	8e-04
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	1e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	6e-06
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-05
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	2e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	8e-04

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  169 bits (429), Expect = 6e-50
 Identities = 44/119 (36%), Positives = 68/119 (57%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
             + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  
Sbjct: 9   ALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALG 68

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578
           D T+AI LDKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K+
Sbjct: 69  DATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI 127

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  167 bits (425), Expect = 9e-50
 Identities = 40/117 (34%), Positives = 61/117 (52%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
              A + K KGN+ ++   + +A+  YTEAIK N  +A  YSNRAA Y +   F  A  D
Sbjct: 13  PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD 72

Query: 521 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577
           C + I L+   +K Y R+  A E +  Y +A++ +  AL L+ + K A+    R   
Sbjct: 73  CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A Length = 414

 Score =  176 bits (448), Expect = 1e-49
 Identities = 91/386 (23%), Positives = 148/386 (38%), Gaps = 37/386 (9%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +A  PL G++  + D+ D     T  G   +          + VV  L   GAT IGKT 
Sbjct: 49  QASGPLRGIAVGIKDIIDTANMPTEMGSEIYRGWQPR--SDAPVVMMLKRAGATIIGKTT 106

Query: 113 VDEFAYSINGTNKHYDTPT-NPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVP 171
              FA           T T NP      PGG+SSG+A AV A ++  +LG  T G V  P
Sbjct: 107 TTAFASR------DP-TATLNPHNTGHSPGGASSGSAAAVGAGMIPLALGTQTGGSVIRP 159

Query: 172 SAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL----LQLPFAAQ 227
           +A+CG    +PS+  +  +G+   S +LDTVG F    + L      +            
Sbjct: 160 AAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPA 219

Query: 228 RSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFH 287
           ++PR  ++  +    ++  A++ +Q  IK+ E+  G  V   + L E             
Sbjct: 220 KAPRIGVVRQEFAGAVEPAAEQGLQAAIKAAERA-GASVQAID-LPEAVHEAWR------ 271

Query: 288 KTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRN 347
                   +  +IQ +E               + P + A +   + ++    +  + I  
Sbjct: 272 --------IHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGR 323

Query: 348 EMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVP 407
             R  +  + +   +L+T +     P         +   NR ++L+      G   V VP
Sbjct: 324 RGRRELGEVFEGVDVLLTYSAPGTAPAKAL-ASTGDPRYNRLWTLM------GNPCVNVP 376

Query: 408 LGYYDKCPTSVSFIARHGGDRFLLDT 433
           +      P  V  IAR G D   L T
Sbjct: 377 VLKVGGLPIGVQVIARFGNDAHALAT 402

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  165 bits (420), Expect = 4e-49
 Identities = 36/117 (30%), Positives = 58/117 (49%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
            + A+  K KGN+ +K   +  A+  Y EA+K +  NA  YSNRAA   +   F +A  D
Sbjct: 10  PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD 69

Query: 521 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577
           C   I LD K +K Y+R+      +  + +A   +  AL ++P+N+ A        +
Sbjct: 70  CDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  164 bits (418), Expect = 9e-49
 Identities = 42/118 (35%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             AE A+ +G + +    W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC
Sbjct: 2   MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 61

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASLSADRLRK 577
            KAI  D   V+AY+R+ TA+  +  Y  A+E    A   +    N  ++   D+L  
Sbjct: 62  NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 119

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  164 bits (418), Expect = 1e-48
 Identities = 37/112 (33%), Positives = 58/112 (51%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
            +  SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA 
Sbjct: 4   MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQAL 63

Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 570
           ADC +A+ LD ++VKA+   G  +  +  Y EAI +   A  L    +    
Sbjct: 64  ADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 115

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  163 bits (415), Expect = 2e-48
 Identities = 37/116 (31%), Positives = 55/116 (47%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +     KEKGN+A        A+  Y+EAIKL+ +N   YSNR+AAY + G + +A  D 
Sbjct: 2   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577
            K ++L     K Y R+  A E L  ++EA   +   L  E  N +       +  
Sbjct: 62  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  161 bits (410), Expect = 2e-47
 Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 3/139 (2%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNA 498
                    +           S E  +++GN+ +K   +  A++ YT+A+ L+    + A
Sbjct: 6   SGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQA 65

Query: 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 558
             + NRAA +L+   + +AE + +KAI  D  +VKA  RR  A E LG   +A+ D    
Sbjct: 66  VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125

Query: 559 LVLEPTNKRASLSADRLRK 577
           + LEP NK    +   +  
Sbjct: 126 VSLEPKNKVFQEALRNISG 144

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  161 bits (409), Expect = 2e-47
 Identities = 43/109 (39%), Positives = 61/109 (55%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
               AE  K +GN+  K + +  A+ FY +AI+LN  NA Y+ NRAAAY + G++  A  
Sbjct: 8   DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ 67

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           DC +AI +D    KAY R G A   L  + EA+  +  AL L+P N+  
Sbjct: 68  DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY 116

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  159 bits (403), Expect = 4e-46
 Identities = 38/115 (33%), Positives = 55/115 (47%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 515
            +      ++  K +GN A   K++ KAI  YT+A+ +   N  Y SNRAAAY  SG   
Sbjct: 3   RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHE 62

Query: 516 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 570
           +A  D   A  +D K  KA+ R G AR  +  YK A E +   +  E      ++
Sbjct: 63  KAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAM 117

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score =  157 bits (397), Expect = 7e-44
 Identities = 37/108 (34%), Positives = 57/108 (52%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
            SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC
Sbjct: 2   PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 569
            +A+ LD ++VKA+   G  +  +  Y EAI +   A  L    +   
Sbjct: 62  RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus} Length = 434

 Score =  156 bits (398), Expect = 2e-42
 Identities = 61/164 (37%), Positives = 79/164 (48%), Gaps = 19/164 (11%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR--------TSTVVSTLVEGG 104
           +   PL GL   V DLF ++G  T            A ++         +  V  L E G
Sbjct: 60  QVRGPLHGLPLTVKDLFPVKGMPT-----------RAGTKAPLPPLPEEARAVRRLREAG 108

Query: 105 ATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDT 164
           A    KT + E A  I G N       N   PS+  GGSS G+AVAVA  +   SLG DT
Sbjct: 109 ALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDT 168

Query: 165 VGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
            G +R+P+ F G++GF+PSYG VS  G +P+S S D  G   R 
Sbjct: 169 GGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRS 212

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score =  147 bits (372), Expect = 3e-42
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + A   KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 522 TKAINLDKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566
            KAI + ++N        KAY R G +      YK+AI  ++ +L    T  
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score =  145 bits (368), Expect = 1e-41
 Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
              +A   K+ GN AYK K + KA   Y +AI+L+ +N T+Y+N+AA Y E   F +   
Sbjct: 4   MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQ 63

Query: 520 DCTKAINLDKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566
            C KA+ + ++         KA  R G A +       A++ F  +L      +
Sbjct: 64  FCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score =  135 bits (343), Expect = 3e-38
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 2/108 (1%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
              E  KE+GN  +K   + +A+  Y + I     N   YSN+A A ++ G + QA   C
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV-LEPTNKRA 568
            + +          +R       L   + A+      +V ++   +  
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDELPEGY 108

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A Length = 521

 Score =  145 bits (367), Expect = 1e-37
 Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 20/161 (12%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRT---------STVVSTLVEGGATC 107
            LTG   A+ D   + G                 SRT         +TVV+ L+  GAT 
Sbjct: 87  VLTGRRVAIKDNVTVAGVPM-----------MNGSRTVEGFTPSRDATVVTRLLAAGATV 135

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
            GK V ++  +S +          NP    +  GGSS G+A  VA   VDF++G D  G 
Sbjct: 136 AGKAVCEDLCFSGSSFTPASGPVRNPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGS 195

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           +R+P+AFCG++G +P++G V + G  PI  ++D +G   R 
Sbjct: 196 IRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRT 236

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  134 bits (339), Expect = 4e-37
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 18/125 (14%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI------------------KLNGNNATYYSN 503
           +S E  ++KGN+ +  K + +AI  Y +A+                  +L+  N   Y+N
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYAN 68

Query: 504 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
            +  YL  G   +AE   ++ +  ++ N KA  RR  AR       EA ED    L   P
Sbjct: 69  MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHP 128

Query: 564 TNKRA 568
                
Sbjct: 129 AAASV 133

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503

 Score =  140 bits (356), Expect = 3e-36
 Identities = 59/169 (34%), Positives = 82/169 (48%), Gaps = 24/169 (14%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAAS--------RTSTVVSTLVEGG 104
           +   PL G+   + D  +     T           SA S          + +V  L + G
Sbjct: 73  RLRGPLHGIPLLLKDNINAAPMAT-----------SAGSLALQGFRPDDAYLVRRLRDAG 121

Query: 105 ATCIGKTVVDEFA-----YSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFS 159
           A  +GKT + E+A      SI+G +       NP   S  P GSSSG+AVAVAA+L   +
Sbjct: 122 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 181

Query: 160 LGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           +G +T G +  P+A  G++G +P+ G VS  GIIPIS S DT G  AR 
Sbjct: 182 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARS 230

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A* Length = 503

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 12/83 (14%)

Query: 363 LVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIA 422
           LV PTT    P             +      S A+V+G   +TVP+G  D  P  + F+ 
Sbjct: 413 LVAPTTGVAWPIRSEG-------DDFPGESYSAAAVAGYPSLTVPMGQIDGLPVGLLFMG 465

Query: 423 RHGGDRFLLDTVQNMYASLQEQA 445
               +  L++      A   EQ 
Sbjct: 466 TAWSEPKLIE-----MAYAYEQR 483

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A Length = 493

 Score =  139 bits (352), Expect = 1e-35
 Identities = 73/421 (17%), Positives = 132/421 (31%), Gaps = 65/421 (15%)

Query: 57  PLTGLSFAVSDLFD-IEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDE 115
           P  G+ + + DL    +G +          +   A   +  V  +   G   +GKT   E
Sbjct: 63  PFAGVPYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPE 122

Query: 116 FAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFC 175
               +    + +    NP    +  GGSS G+  AVAA L   + G D  G VR+P++ C
Sbjct: 123 MGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVC 182

Query: 176 GILGFRPSYGAVSHMGIIPISTSLD----------TV-----------GWFARDPKILRH 214
           G++G +P+ G +S   ++  S ++           +V           G    D      
Sbjct: 183 GVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFCAPT 242

Query: 215 VGHVLLQLPFAAQRSPRQIIIA---DDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHEN 271
                 Q       +P  + +     +         D       +               
Sbjct: 243 ASRPYAQ---GISENPGSLRVGVLTHNPVG--DFALDPECAAAARGAAAAL-------AA 290

Query: 272 LG---EYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPD-ISAE 327
           LG        +    + F K           I             E +   L  D +   
Sbjct: 291 LGHDVNDAYPEALGDRSFLKD-------YSTICDVAIAREIERNGELIGRPLTEDDVEWT 343

Query: 328 IGEMLE----ISETVIENCKSIRNEMRSAISSLLKDDG-ILVTPTTAYPPPKLG------ 376
             EM++    ++      C          +    +    +L+ PT     P++G      
Sbjct: 344 SWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLILPTVTRQTPEIGELMLAK 403

Query: 377 --GKEMLSEDYQNRAFSLL---SIASVSGCCQVTVPLGY-YDKCPTSVSFIARHGGDRFL 430
               E     + + +  +L      +VSG   +++P+G   D  P  V  +A +G +  L
Sbjct: 404 GTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLL 463

Query: 431 L 431
           L
Sbjct: 464 L 464

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  126 bits (317), Expect = 1e-33
 Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 16/132 (12%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI----------------KLNGNNATYYSNRA 505
           QSA   KE+GN+ +K  +  +AI  Y EA+                K      +   N A
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95

Query: 506 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
             Y ++  + +A    +K + +DK NVKA  + G A    G+ +EA E+   A  L P N
Sbjct: 96  TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155

Query: 566 KRASLSADRLRK 577
                S +    
Sbjct: 156 LDIRNSYELCVN 167

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A Length = 485

 Score =  132 bits (335), Expect = 2e-33
 Identities = 57/165 (34%), Positives = 83/165 (50%), Gaps = 20/165 (12%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEG 103
           +    L G+   + D     G  T           + AS+          STV+  L + 
Sbjct: 66  QMDGKLFGIPMGIKDNIITNGLET-----------TCASKMLEGFVPIYESTVMEKLHKE 114

Query: 104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGID 163
            A  IGK  +DEFA   +    ++    NP     +PGGSS G+A AVAA LV  SLG D
Sbjct: 115 NAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSD 174

Query: 164 TVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           T G +R P+A+CG++G +P+YG VS  G++  ++SLD +G   R+
Sbjct: 175 TGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRN 219

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 471

 Score =  131 bits (332), Expect = 4e-33
 Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 20/161 (12%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEGGATC 107
           PL GL  AV D     G  T           +A SR          +T V+ L   GA  
Sbjct: 57  PLAGLVVAVKDNIATRGLRT-----------TAGSRLLENFVPPYEATAVARLKALGALV 105

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           +GKT +DEF    +  +  +    NP  P ++PGGSS G+A A+AADL   +LG DT G 
Sbjct: 106 LGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGS 165

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           VR P+AFCG+ G +P+YG VS  G+I  ++SLD +G  AR 
Sbjct: 166 VRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARS 206

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  126 bits (319), Expect = 4e-33
 Identities = 39/105 (37%), Positives = 54/105 (51%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           AE A+ +G + +    W  A+  YTE IK    +A  YSNRAAA  +  SF +A ADC K
Sbjct: 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           AI  D   V+AY+R+ TA+  +  Y  A+E    A   +      
Sbjct: 199 AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  103 bits (258), Expect = 6e-25
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A+  K +GN+ YK +Q+ +AI  Y +A +L+  + TY +NRAAA  E G +  A +    
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLND 63

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           A+   ++    Y     +   +G     + D    +     +   
Sbjct: 64  AVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 87.2 bits (217), Expect = 2e-19
 Identities = 20/99 (20%), Positives = 33/99 (33%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
             +   K +   K +        +N   A         Y     +  A    T+ I    
Sbjct: 111 TADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP 170

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           ++ + Y  R  A   L  + EAI D + A+  +P   RA
Sbjct: 171 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +    Y+  ++  AIS   +A++        Y   + ++   G+      D  K I   +
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           K++  + R       L   ++ ++       + P     
Sbjct: 104 KSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEE 141

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 79.9 bits (198), Expect = 7e-17
 Identities = 7/99 (7%), Positives = 27/99 (27%), Gaps = 1/99 (1%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                 +       +    + I+    + T +   A    +  +  +          ++ 
Sbjct: 78  ISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNP 136

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           +  +     G        +  A++ ++  +   P + R 
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           +   A      + +AI+   +AI+ + N    Y  +A A +    +  A      A   D
Sbjct: 179 RAA-ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237

Query: 529 KKNVKAYLRRGTAREMLGYYK 549
            +       R   +      +
Sbjct: 238 AEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 555
           + A         + ++  F +A     KA  L  K++     R  A    G Y+ AI   
Sbjct: 3   SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTL 61

Query: 556 SYALVLEPTNKRA 568
           + A+      +  
Sbjct: 62  NDAVEQGREMRAD 74

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A* Length = 478

 Score =  130 bits (330), Expect = 7e-33
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 20/161 (12%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEGGATC 107
           PL G+  AV D   +EG  T           + AS+          +TV+  L + GA  
Sbjct: 63  PLFGIPIAVKDNILVEGEKT-----------TCASKILENFVAPYDATVIERLKKAGALI 111

Query: 108 IGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           +GKT +DEFA   +     +    NP    ++PGGSS G+A +VA      SLG DT G 
Sbjct: 112 VGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGS 171

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           +R P++FCG++G +P+YG VS  G++  ++SLD +G F R 
Sbjct: 172 IRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRR 212

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A* Length = 476

 Score =  130 bits (330), Expect = 7e-33
 Identities = 53/165 (32%), Positives = 82/165 (49%), Gaps = 20/165 (12%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASR---------TSTVVSTLVEG 103
           +      G+  A+ D     G  T           + ASR          +TVV  + E 
Sbjct: 54  EKKGKFWGIPVAIKDNILTLGMRT-----------TCASRILENYESVFDATVVKKMKEA 102

Query: 104 GATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGID 163
           G   +GK  +DEFA   +     +    NP    ++PGGSS G+A AV+A +V  +LG D
Sbjct: 103 GFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSD 162

Query: 164 TVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARD 208
           T G VR P++ CG++G++P+YG VS  G++  ++SLD +G   + 
Sbjct: 163 TGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKT 207

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  129 bits (325), Expect = 2e-32
 Identities = 44/120 (36%), Positives = 68/120 (56%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
            + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 62

Query: 521 CTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM 580
            T+AI LDKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K+  
Sbjct: 63  ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 122

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  127 bits (322), Expect = 5e-32
 Identities = 32/117 (27%), Positives = 44/117 (37%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
              E   E G +     Q   A+S +  A+  + +N   Y  RA  +L  G    A  D 
Sbjct: 24  ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578
           TK I L      A L+RG      G   EA +DF   L   P+      +  +L K 
Sbjct: 84  TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS 140

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  109 bits (274), Expect = 1e-25
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 4/117 (3%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----YSNRAAAYLES 511
             + Q +      E   +  +D ++  A S Y   +K   + A Y           + + 
Sbjct: 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308

Query: 512 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
              ++A   C++ + ++  NV A   R  A  +   Y EAI+D+  A      +++ 
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 98.6 bits (246), Expect = 4e-22
 Identities = 22/119 (18%), Positives = 53/119 (44%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           +    +  + +   A+    +  AI+F  + +++   +A     RA  +++ G   +A +
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578
           D   A  L   N +A+ +  T    LG ++ ++ +    L L+  +KR      +++K+
Sbjct: 199 DLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKL 257

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.1 bits (198), Expect = 3e-16
 Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 12/127 (9%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             AE+ + +     K+ +  KAIS    A KL  +N   +   +  Y + G    + ++ 
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234

Query: 522 TKAINLDKKNVKAYLRRGTAREM------------LGYYKEAIEDFSYALVLEPTNKRAS 569
            + + LD+ + + +      +++             G Y +A   +   +  EP+    +
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294

Query: 570 LSADRLR 576
           + +    
Sbjct: 295 VRSKERI 301

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 16/97 (16%), Positives = 39/97 (40%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
             +   KD++ ++AI   +E +++  +N     +RA AYL    + +A  D   A   ++
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566
            + +       A+ +L   ++        +      +
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQ 397

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 77.8 bits (192), Expect = 2e-15
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 15/114 (13%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS---------------NRAAAYLESGSF 514
           +G+   K  +  +A   + + +K N +                     ++A     SG +
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY 159

Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             A A   K + +   + +    R       G  ++AI D   A  L+  N  A
Sbjct: 160 TAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 18/113 (15%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
            +    K++      ++ + +AI  Y  A + N N+         A        + +   
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK 386

Query: 522 TKAINLDKKN---VKAYLR---------------RGTAREMLGYYKEAIEDFS 556
              +  + K    +KAY +               +  A +       A E  S
Sbjct: 387 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A* Length = 573

 Score =  128 bits (323), Expect = 1e-31
 Identities = 73/395 (18%), Positives = 121/395 (30%), Gaps = 43/395 (10%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
                L G+  ++ + F  +G+ +  G          +     VV  L   GA     T 
Sbjct: 123 PRQGLLYGVPVSLKECFSYKGHDSTLGLSLNE--GMPSESDCVVVQVLKLQGAVPFVHTN 180

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
           V +  +S + +N  +    NP   S+ PGGSS G    + +      LG D  G +R PS
Sbjct: 181 VPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPS 240

Query: 173 AFCGILGFRPSYGAVSHMGIIP----ISTSLDTVGWFARDPKILRHVGHVLLQ------- 221
           AFCGI G +P+   +S  G+       +    ++G  ARD + L      LL        
Sbjct: 241 AFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLD 300

Query: 222 -----LPF--AAQRSPRQIIIA---DDCFELLKIPADRVVQVVIKSTEKLFGRQV----- 266
                LPF     RS R + +     D + +      R +    +  E   G  +     
Sbjct: 301 PTVPPLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAA-GHTLIPFLP 359

Query: 267 LKHENLGEYFDSKVPSLKGFHKTNGELKN--VMRLIQRYEFKNNHNEWIESVKPALDPDI 324
                  E   +      G        K   V   +           W + +   L   +
Sbjct: 360 NNIPYALEVLSTGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPL 419

Query: 325 SAEIGEMLEISE--TVIENCKSI--RNEMRSAISSLLKDDGI--LVTPTTAYPPPKLGGK 378
              +   L      +  +  K        R ++ +  K   +  L+TP            
Sbjct: 420 FPRLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPG 479

Query: 379 EMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDK 413
                     A S   + +        VP+     
Sbjct: 480 RAT------GAVSYTMLYNCLDFPAGVVPVTTVTA 508

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  121 bits (306), Expect = 2e-30
 Identities = 32/115 (27%), Positives = 45/115 (39%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
            E   E G +     Q   A+S +  A+  + +N   Y  RA  +L  G    A  D TK
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578
            I L      A L+RG      G   EA +DF   L   P+ +    +  +L K 
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  110 bits (276), Expect = 2e-26
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 4/117 (3%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY----YSNRAAAYLES 511
             + Q +      E   +  +D ++  A S Y   +K   + A Y           + + 
Sbjct: 226 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD 285

Query: 512 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
              ++A   C++ + ++  NV A   R  A  +   Y EAI+D+  A      +++ 
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 97.3 bits (243), Expect = 4e-22
 Identities = 21/109 (19%), Positives = 48/109 (44%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           +    +  + +   A+    +  AI+F  + +++   +A     RA  +++ G   +A +
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           D   A  L   N +A+ +  T    LG ++ ++ +    L L+  +KR 
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 224

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 79.2 bits (196), Expect = 4e-16
 Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 12/123 (9%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             AE+ + +     K+ +  KAIS    A KL  +N   +   +  Y + G    + ++ 
Sbjct: 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV 211

Query: 522 TKAINLDKKNVKAYLRRGTAREM------------LGYYKEAIEDFSYALVLEPTNKRAS 569
            + + LD+ + + +      +++             G Y +A   +   +  EP+    +
Sbjct: 212 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT 271

Query: 570 LSA 572
           + +
Sbjct: 272 VRS 274

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 15/114 (13%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNR---------------AAAYLESGSF 514
           +G+   K  +  +A   + + +K N +                       A    +   +
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADY 136

Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             A     K + +   + +    R       G  ++AI D   A  L+  N  A
Sbjct: 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 17/72 (23%), Positives = 28/72 (38%)

Query: 497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS 556
           +   +       L +G    A +    A++ D  N  AY RR T    +G  K A+ D +
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61

Query: 557 YALVLEPTNKRA 568
             + L+     A
Sbjct: 62  KVIALKMDFTAA 73

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 16/81 (19%), Positives = 37/81 (45%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
             +   KD++ ++AI   +E +++  +N     +RA AYL    + +A  D   A   ++
Sbjct: 278 ICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337

Query: 530 KNVKAYLRRGTAREMLGYYKE 550
            + +       A+ +L   ++
Sbjct: 338 NDQQIREGLEKAQRLLKQSQK 358

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  120 bits (303), Expect = 2e-30
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 15/133 (11%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAI---------------KLNGNNATYYSNR 504
           + + + I KE+G   +K+ ++ +A+  Y + +               K        + N 
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202

Query: 505 AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564
           A  +L+  +F  A   C KA+ LD  N K   RRG A   +  ++ A  DF   L L P 
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262

Query: 565 NKRASLSADRLRK 577
           NK A       ++
Sbjct: 263 NKAAKTQLAVCQQ 275

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  120 bits (303), Expect = 3e-29
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           + + A   K+KGNQ +++K++  AI +Y  A++L   +  +YSN +A Y+  G   +   
Sbjct: 2   KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVE 60

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFS-YALVLEPTNKRASLSADRLRK 577
             TKA+ L     K  LRR +A E LG + +A+ D S  +L  +  +       +R   
Sbjct: 61  MSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  102 bits (256), Expect = 3e-23
 Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 14/174 (8%)

Query: 408 LGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKS-------------KLS 454
            G +    T  ++   +  D+ L++ + N+Y    E  D A +S             K +
Sbjct: 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227

Query: 455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF 514
            +   +++ A   +  G   +     L A     +AI+L       Y   A    +    
Sbjct: 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PRVNSYIYMALIMADRNDS 286

Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +      KA+ LD  N   Y  RG    +L  Y +A +DF  A  L+P N   
Sbjct: 287 TEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 99.0 bits (247), Expect = 4e-22
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 9/116 (7%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ----- 516
           ++ E+             + KA+  Y  AI+L       Y   A    ++    +     
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429

Query: 517 ----AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
               A     KA  LD ++ +A +     +       EAI  F  +  L  T +  
Sbjct: 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 91.7 bits (228), Expect = 9e-20
 Identities = 14/99 (14%), Positives = 33/99 (33%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +G   +  + + +A   + +A +L+  N   Y   A        F   E   ++A     
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           +  +              + +A++ +  A+ LE      
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 87.1 bits (216), Expect = 3e-18
 Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 9/108 (8%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
               AY++ ++    + ++EA +         +  A    +   F +A      AI L+ 
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403

Query: 530 KNVKAYLRRGTA---------REMLGYYKEAIEDFSYALVLEPTNKRA 568
           K    Y+                 +  + EA      A  L+P +++A
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 86.7 bits (215), Expect = 3e-18
 Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)

Query: 474 AYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532
              D+    +  +++ +A+KL+ NN++ Y +R        ++ QA  D  KA  LD +N+
Sbjct: 279 IMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI 338

Query: 533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
             Y++          + +    FS A    P  
Sbjct: 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPEA 371

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 3/114 (2%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK-AINLD 528
                       K +   T+A++L  + +     RA+A    G F  A  D +  ++N D
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104

Query: 529 KKN--VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVFM 580
             +  ++  L R   ++ +   KE   D   A               + ++  +
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 19/131 (14%), Positives = 34/131 (25%), Gaps = 16/131 (12%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES---- 511
                KQ    +       +   +     + Y E+ + +       SN      ES    
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKA 208

Query: 512 --------GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
                     F +      +   L +K   +    G  + +      A ED   A+ L P
Sbjct: 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP 268

Query: 564 T----NKRASL 570
                   A +
Sbjct: 269 RVNSYIYMALI 279

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.3 bits (149), Expect = 5e-10
 Identities = 9/77 (11%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537
           + +++A +   +A KL+  +       A   L+     +A     ++ +L +   +    
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL-- 486

Query: 538 RGTAREMLGYYKEAIED 554
           +          ++ I  
Sbjct: 487 QAITFAEAAKVQQRIRS 503

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  113 bits (285), Expect = 7e-27
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 1/118 (0%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
            ++  A   K +GN  +  K + +AI +Y  AI+L+ N   +YSN +A Y+ +G   +  
Sbjct: 20  QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVI 79

Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR 576
              TKA+ +   + KA LRR +A E LG + +A+ D S  L L      AS+     R
Sbjct: 80  EFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLER 136

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 92.9 bits (231), Expect = 4e-20
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 1/109 (0%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           ++ +A      G   +     L A     E+I L+    +Y    A    +  +  +   
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYI-FLALTLADKENSQEFFK 297

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
              KA++L+ +    Y  RG    +L  YK A EDF  A  L P N   
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 89.4 bits (222), Expect = 5e-19
 Identities = 20/96 (20%), Positives = 37/96 (38%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                   +   +   F+ +A+ LN      Y +R   Y     +  A+ D  KA +L+ 
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
           +NV  Y++        G + E+   F+   +  PT 
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 85.9 bits (213), Expect = 7e-18
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 1/97 (1%)

Query: 473 QAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
           Q Y   + +  A   + +A  LN  N   Y   A    + G F ++EA   +        
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL 377

Query: 532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +            G +  AI+ +  A  LE   ++ 
Sbjct: 378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 18/124 (14%)

Query: 462 QSAEIAKEKGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAA------------- 507
              E+          D+     AI  Y  A +L       +                   
Sbjct: 376 TLPEVPTFFAE-ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQ 434

Query: 508 ---YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT 564
               L+   F  A    TKA  LD ++ +A +     +  +    EAIE F  + +L  T
Sbjct: 435 DPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494

Query: 565 NKRA 568
               
Sbjct: 495 MDEK 498

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 16/115 (13%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                YK  ++ ++ +F+ E            +  A    + G F  A      A  L++
Sbjct: 350 LACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409

Query: 530 KNVKAYLRRGTA----------------REMLGYYKEAIEDFSYALVLEPTNKRA 568
              K ++  G                  +     +  AI+  + A  L+P +++A
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 482 KAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537
                  +   L+ +     A    NR   +  + +F +A      AI LD      Y  
Sbjct: 5   NGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSN 64

Query: 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
                   G  ++ IE  + AL ++P + +A
Sbjct: 65  ISACYISTGDLEKVIEFTTKALEIKPDHSKA 95

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 73.6 bits (181), Expect = 6e-14
 Identities = 17/153 (11%), Positives = 39/153 (25%), Gaps = 12/153 (7%)

Query: 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQA------YKDKQWLKA 483
           +L+   N  A      +++      +       S        +             +  A
Sbjct: 133 MLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTA 192

Query: 484 ISFYTEAIKLNGNNATYYSNRAAAYLE--SGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
            +  ++A++   +        A   L   +  +    +  T    L +    A    G  
Sbjct: 193 YALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252

Query: 542 REMLGYYKEAIEDFSYALVLEPT----NKRASL 570
             +     +A      ++ L PT       A  
Sbjct: 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALT 285

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 10/100 (10%), Positives = 29/100 (29%), Gaps = 2/100 (2%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL 515
               +         +      ++++  AI   T+A +L+  +       A   L+     
Sbjct: 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKID 479

Query: 516 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 555
           +A      +  L +   +    + T        ++ +   
Sbjct: 480 EAIELFEDSAILARTMDEKL--QATTFAEAAKIQKRLRAD 517

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 4/61 (6%)

Query: 512 GSFLQAEADCTKAINLDKKNVK----AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 567
           GS +  E D  +   L     +        RG        + EAI+ + YA+ L+P    
Sbjct: 1   GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60

Query: 568 A 568
            
Sbjct: 61  F 61

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  103 bits (258), Expect = 2e-24
 Identities = 32/135 (23%), Positives = 56/135 (41%), Gaps = 17/135 (12%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY-----------------YS 502
           +  +A+  K  GN  +K+++  +A+  Y  AI   G++  +                 + 
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234

Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562
           N AA  ++   + +A   C   +  ++KN KA  RRG A+  LG    A +DF  A    
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294

Query: 563 PTNKRASLSADRLRK 577
           P +K        L +
Sbjct: 295 PDDKAIRRELRALAE 309

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 93.9 bits (234), Expect = 1e-21
 Identities = 21/100 (21%), Positives = 30/100 (30%), Gaps = 2/100 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G        Q   AI  Y  A+  +      Y    + +   G+F  A     K I   
Sbjct: 80  YGK-ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT 138

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             + K +   G A      Y +A   F   L L+P     
Sbjct: 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 91.2 bits (227), Expect = 1e-20
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 3/109 (2%)

Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC- 521
           + ++     +  +K+  + +AI  + +      N+   Y+ RA  Y E   +  A+ D  
Sbjct: 2   NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 522 --TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
                +N  K     +   G      G    AI+ +  A+  + T    
Sbjct: 62  TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDM 110

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 84.6 bits (210), Expect = 2e-18
 Identities = 14/109 (12%), Positives = 36/109 (33%), Gaps = 5/109 (4%)

Query: 464 AEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
            ++  + G+  + +   +  AI +  + I+    +   +     AY  +  +++A++   
Sbjct: 108 LDMYGQIGS-YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV 166

Query: 523 KAINLDKKNVKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRA 568
           K + L       YL R  A            A   +   + +       
Sbjct: 167 KVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 82.3 bits (204), Expect = 1e-17
 Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 3/112 (2%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISF---YTEAIKLNGNNATYYSNRAAAYLESGSFLQ 516
           +  S  I   +    Y+  ++  A      Y   +      +  +       ++ G    
Sbjct: 33  KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSL 92

Query: 517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           A      A++ D   +  Y + G+     G +  AI+     +    T+ + 
Sbjct: 93  AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 79.2 bits (196), Expect = 1e-16
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAIN 526
            G   Y +K+++KA S + + ++L  N    Y  RA A            A+    K I 
Sbjct: 148 LGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207

Query: 527 LDKKN--------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           +            ++A         +     +A   +   L L+PTNK+A
Sbjct: 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATY--------YSNRAAAYLESGSFLQAEADCTKAINL 527
            D +   A  +Y + I++                   A  Y  +   ++A+A     + L
Sbjct: 191 PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250

Query: 528 DKKNVKAYLRRGTAREMLGYY 548
           D  N KA        E   ++
Sbjct: 251 DPTNKKAIDGLKMKLEHHHHH 271

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 89.0 bits (221), Expect = 3e-21
 Identities = 22/139 (15%), Positives = 36/139 (25%), Gaps = 12/139 (8%)

Query: 439 ASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA 498
            +L     +             + + E     G   Y+  +W  A   +     L+  +A
Sbjct: 5   GTLAMLRGL------------SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA 52

Query: 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 558
            Y+    A     G + QA    +    +D    +           LG    A   F  A
Sbjct: 53  RYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112

Query: 559 LVLEPTNKRASLSADRLRK 577
             L          A R   
Sbjct: 113 RALAAAQPAHEALAARAGA 131

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 54.0 bits (130), Expect = 6e-09
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--- 531
                + +A+  Y+    ++ N   +  + A  +L+ G    AE+    A  L       
Sbjct: 63  QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAH 122

Query: 532 VKAYLRRGTAREMLGYYKE 550
                R G   E +   K+
Sbjct: 123 EALAARAGAMLEAVTARKD 141

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 87.1 bits (216), Expect = 7e-20
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 16/123 (13%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRA 505
           QS +   +K + A +  Q  +A+S++ + I LN +                     +  A
Sbjct: 2   QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61

Query: 506 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
            AY ++ ++ +A     + +     NV         +   G  K+A+  +   L LE  N
Sbjct: 62  LAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121

Query: 566 KRA 568
             A
Sbjct: 122 LAA 124

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 87.1 bits (216), Expect = 7e-20
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 1/111 (0%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
           N + S+++A E      K++ + KA  FY E ++   NN       A   +  G    A 
Sbjct: 49  NSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDAL 108

Query: 519 ADCTKAINLDKKNVKAYLRRGTA-REMLGYYKEAIEDFSYALVLEPTNKRA 568
               K + L+  N+ A +  G          K+ +E     L      + A
Sbjct: 109 RMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 77.5 bits (191), Expect = 1e-16
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 1/97 (1%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLD 528
                    Q   A+  Y + ++L  +N          Y  +     +      K ++  
Sbjct: 94  CAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
            K   A  R G ++     Y++A       ++  P+ 
Sbjct: 154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 86.7 bits (215), Expect = 1e-19
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +G  A   K W  A+  ++    +   ++    N    Y    +  +AE   T++IN DK
Sbjct: 12  EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
               AY +RG        Y  AI+D   AL+    N
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 80.9 bits (200), Expect = 1e-17
 Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 16/125 (12%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             + I    G      K   +A   +T +I  + + A  Y  R   Y ++  +  A  D 
Sbjct: 35  PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL 94

Query: 522 TKAINLDKKNV----------------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
            +A+   + N                 +              +K+A E  + A  ++   
Sbjct: 95  KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154

Query: 566 KRASL 570
           + + +
Sbjct: 155 RHSKI 159

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.8 bits (127), Expect = 5e-08
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 3/76 (3%)

Query: 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
           ++   A    N      +   +  A    +   +    + +     G    +L    EA 
Sbjct: 1   MSLVEAISLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAE 57

Query: 553 EDFSYALVLEPTNKRA 568
           + F+ ++  +     A
Sbjct: 58  KAFTRSINRDKHLAVA 73

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 28/110 (25%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIK-LNGNNATYYS---------------NRAAAYLESGS 513
           +G   Y+ +++  AI    EA+  L GN    Y                N A  Y +   
Sbjct: 77  RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE 136

Query: 514 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
           + +AE     A ++  +   + +             +A+E      + EP
Sbjct: 137 WKKAEEQLALATSMKSEPRHSKID------------KAMECVWKQKLYEP 174

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 89.5 bits (223), Expect = 2e-19
 Identities = 23/107 (21%), Positives = 40/107 (37%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
            +  +     +  ++ ++  ++  F T AIK N   A  YSN    Y E G   +A    
Sbjct: 31  DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             A+ L    +  Y+    A    G  + A++ +  AL   P     
Sbjct: 91  RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 86.1 bits (214), Expect = 3e-18
 Identities = 24/99 (24%), Positives = 38/99 (38%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            GN   +  Q  +AI  Y  A++L  +    Y N AAA + +G    A      A+  + 
Sbjct: 73  LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
                    G   + LG  +EA   +  A+  +P    A
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 84.9 bits (211), Expect = 6e-18
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN   K+ + + +A++ Y  A+ L+ N+A  + N A  Y E G    A     +AI L 
Sbjct: 209 LGN-VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
                AY     A +  G   EA + ++ AL L PT+  +
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 84.5 bits (210), Expect = 8e-18
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             N A K+K    +A   Y  A++L   +A   +N A    E G+  +A     KA+ + 
Sbjct: 277 LAN-ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +   A+    +  +  G  +EA+  +  A+ + PT   A
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 84.1 bits (209), Expect = 1e-17
 Identities = 19/100 (19%), Positives = 39/100 (39%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           E  ++ Y+   +  A     +  +   +N       ++ + +     ++    T AI  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
               +AY   G   +  G  +EAIE + +AL L+P     
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG 103

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 83.4 bits (207), Expect = 2e-17
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                Y ++     AI  Y  AI+L  +    Y N A A  E GS  +AE     A+ L 
Sbjct: 243 LAC-VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             +  +       +   G  +EA+  +  AL + P    A
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 81.0 bits (201), Expect = 1e-16
 Identities = 20/94 (21%), Positives = 30/94 (31%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                        A+  Y  A++ N +     S+        G   +A+A   KAI    
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
               A+   G      G    AI  F  A+ L+P
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 80.7 bits (200), Expect = 2e-16
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN   K    L +A + Y +AI+   N A  +SN    +   G    A     KA+ LD
Sbjct: 141 LGN-LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
              + AY+  G   +    +  A+  +  AL L P +
Sbjct: 200 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 79.9 bits (198), Expect = 3e-16
 Identities = 20/96 (20%), Positives = 36/96 (37%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G       +   AI  + +A+ L+ N    Y N      E+  F +A A   +A++L  
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
            +   +          G    AI+ +  A+ L+P  
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.3 bits (155), Expect = 6e-11
 Identities = 15/77 (19%), Positives = 30/77 (38%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
             N   +     +A+  Y +A+++    A  +SN A+   + G   +A     +AI +  
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370

Query: 530 KNVKAYLRRGTAREMLG 546
               AY   G   + + 
Sbjct: 371 TFADAYSNMGNTLKEMQ 387

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 11/68 (16%), Positives = 19/68 (27%)

Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 560
               A    ++G F  AE  C +    +  N    L   +          +    + A+ 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 561 LEPTNKRA 568
             P    A
Sbjct: 62  QNPLLAEA 69

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 90.1 bits (223), Expect = 2e-19
 Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 15/137 (10%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY--------------- 500
           +T  + + A I KEKG   +K  ++++A+  Y + +                        
Sbjct: 260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319

Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 560
           + N A  YL+   + +A   C KA+ LD  N K   RRG A+ ++  ++ A  DF   L 
Sbjct: 320 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379

Query: 561 LEPTNKRASLSADRLRK 577
           + P NK A L     +K
Sbjct: 380 VNPQNKAARLQISMCQK 396

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 87.0 bits (216), Expect = 3e-19
 Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 1/131 (0%)

Query: 436 NMYASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
            +  +LQ++  +A   + L++      + A++  E+G           A + +++A+ + 
Sbjct: 14  PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR 73

Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIED 554
            +    ++       ++G+F  A       + LD     A+L RG A    G  K A +D
Sbjct: 74  PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD 133

Query: 555 FSYALVLEPTN 565
                  +P +
Sbjct: 134 LLAFYQDDPND 144

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 75.0 bits (185), Expect = 4e-15
 Identities = 19/111 (17%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK----LNGNNATYYSNRAAAYLESGSFLQA 517
            S   ++          Q    ++   + +      +   A     R   Y   G    A
Sbjct: 3   TSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALA 62

Query: 518 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             D ++A+ +     + +   G      G +  A E F   L L+PT   A
Sbjct: 63  RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 1/114 (0%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
           ++QA    K     +   Q     +    GN   +     +  +  T+   L  + +   
Sbjct: 160 EKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETN 218

Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 555
                 YL  G    A A    A+  +  N   +        +LG  ++ + + 
Sbjct: 219 FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAES 272

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 16/99 (16%), Positives = 28/99 (28%), Gaps = 1/99 (1%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G    +   +  A   +   ++L+      + NR  A    G    A+ D       D 
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +    L    A + L   K+A E            +  
Sbjct: 143 NDPFRSLWLYLAEQKLD-EKQAKEVLKQHFEKSDKEQWG 180

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 3/95 (3%)

Query: 474 AYKDKQWLKAISFYTEAIKLNGNNATYYSNRA---AAYLESGSFLQAEADCTKAINLDKK 530
           A +     +A     +  + +      ++          E     + +AD T   +L + 
Sbjct: 154 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 213

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
             +     G     LG    A   F  A+     N
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 7/54 (12%), Positives = 14/54 (25%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
            G           A + +  A+  N +N   +          G      A+  +
Sbjct: 221 LGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 85.6 bits (213), Expect = 5e-19
 Identities = 27/98 (27%), Positives = 38/98 (38%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             +  +   + KA   +T+AI+ N  +A  Y N A          +A A   KA+ LD  
Sbjct: 30  MGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS 89

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
              AY   G    +   YKEA + F  AL     N   
Sbjct: 90  AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 84.5 bits (210), Expect = 1e-18
 Identities = 22/99 (22%), Positives = 41/99 (41%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
             N      +  +A++FY +A++L+ + AT Y      Y+    + +A+    KA+    
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           +N   +   GT    L   K A+     A+ L   +  A
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 82.6 bits (205), Expect = 5e-18
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 2/100 (2%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN  Y  K+   +A   + +A++    N   +       ++      A     +A+ L+
Sbjct: 97  AGN-VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN 155

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           + + +A  + G      G   EA+  F+     +P +  A
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 82.2 bits (204), Expect = 8e-18
 Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G       +Q   A+ +   A++LN N+              G   +A +        D
Sbjct: 131 LGT-VLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD 189

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             +  A+   G         ++A+E    A+ ++P +  A
Sbjct: 190 PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 69.9 bits (172), Expect = 1e-13
 Identities = 16/91 (17%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL----QAEADCTKAINLDKKNVKAYLR 537
            +   +  +  L    +   S      +  GS      +A    TKAI  +K++   Y+ 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62

Query: 538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
                  +   + A+  +  AL L+ +   A
Sbjct: 63  FANLLSSVNELERALAFYDKALELDSSAATA 93

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G     +     +A+S +    + +  +A  + N    Y    +  +A     KAI++ 
Sbjct: 165 FGM-CLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223

Query: 529 KKNVKAYLRRGTAREMLGYY 548
             ++ A   +        ++
Sbjct: 224 PDHMLALHAKKLLGHHHHHH 243

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 80.2 bits (199), Expect = 2e-18
 Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 2/106 (1%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q+ E    +G   Y    + ++I  + +AI+L+   + Y+  +  A      + +A    
Sbjct: 4   QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63

Query: 522 TKAINL--DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
              IN+  D+ N   +  +  A   +   +   E       LE  +
Sbjct: 64  NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 64.4 bits (158), Expect = 6e-13
 Identities = 17/71 (23%), Positives = 34/71 (47%)

Query: 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
           +   N   Y        ++G++ ++     KAI LD +  K +L +G A   L  Y+EA+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 553 EDFSYALVLEP 563
           + ++Y + +  
Sbjct: 61  DCYNYVINVIE 71

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 41.3 bits (98), Expect = 7e-05
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 527 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           +  +N + Y   G  +   G Y E+I+ F  A+ L+P   + 
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 16/130 (12%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAI----------------KLNGNNATYYSNRAAA 507
           +E  K  GN  +K + W  AI  YT+ +                KL     +   N  A 
Sbjct: 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGAC 282

Query: 508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 567
            L+   +  A   C +A+ +D  N KA  RR    + L  Y +A+ D   A  + P +K 
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA 342

Query: 568 ASLSADRLRK 577
                 ++++
Sbjct: 343 IQAELLKVKQ 352

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 86.0 bits (213), Expect = 6e-18
 Identities = 13/107 (12%), Positives = 27/107 (25%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q        G      +   + +    +A  L        ++         +  +     
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 265

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A  L  + V A       ++ L   +  +     A  L P    A
Sbjct: 266 CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 84.0 bits (208), Expect = 2e-17
 Identities = 14/107 (13%), Positives = 29/107 (27%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q        G      +   + +    +A  L        ++ +       +  +     
Sbjct: 240 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVL 299

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A  L  + V A    G  ++ L   +  +     A  L P    A
Sbjct: 300 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 83.3 bits (206), Expect = 4e-17
 Identities = 13/110 (11%), Positives = 28/110 (25%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +        G      +   + +    +A  L        ++         +  +     
Sbjct: 376 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVL 435

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 571
            +A  L  + V A    G  R  L      +     AL     +   +L+
Sbjct: 436 CQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALA 485

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.9 bits (205), Expect = 5e-17
 Identities = 11/99 (11%), Positives = 25/99 (25%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                   +   + +    +A  L        ++         +  +      +A  L  
Sbjct: 350 HDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 409

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           + V A       ++ L   +  +     A  L P    A
Sbjct: 410 EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.5 bits (204), Expect = 7e-17
 Identities = 11/99 (11%), Positives = 25/99 (25%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                   +   + +    +A  L        ++         +  +      +A  L  
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           + V A       ++ L   +  +     A  L P    A
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.5 bits (204), Expect = 7e-17
 Identities = 14/107 (13%), Positives = 28/107 (26%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q        G      +   + +    +A  L        ++         +  +     
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 367

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A  L  + V A    G  ++ L   +  +     A  L P    A
Sbjct: 368 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.5 bits (204), Expect = 9e-17
 Identities = 13/107 (12%), Positives = 26/107 (24%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q               +   + +    +A  L        ++         +        
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A  L  + V A    G  ++ L   +  +     A  L P    A
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 210

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 12/107 (11%), Positives = 26/107 (24%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +               +     +    +A  L        ++         +  +     
Sbjct: 138 EQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 197

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A  L  + V A    G  ++ L   +  +     A  L P    A
Sbjct: 198 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 82.1 bits (203), Expect = 1e-16
 Identities = 13/107 (12%), Positives = 28/107 (26%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +        G      +   + +    +A  L        ++         +  +     
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL 231

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A  L  + V A    G  ++ L   +  +     A  L P    A
Sbjct: 232 CQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 278

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 81.7 bits (202), Expect = 1e-16
 Identities = 11/107 (10%), Positives = 26/107 (24%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +               +   + +    +A  L        ++         +  +     
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A  L  + V A       ++ L   +  +     A  L P    A
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVA 176

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 3/129 (2%)

Query: 441 LQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYK-DKQWLKAISFYTEAIKLNGNNAT 499
           L+    +A + +      +  Q  +IAK  G  A +    W  A+      + L      
Sbjct: 16  LEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL--TGAPLNLTPEQVV 73

Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 559
             ++         +  +      +A  L  + V A       ++ L   +  +     A 
Sbjct: 74  AIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH 133

Query: 560 VLEPTNKRA 568
            L P    A
Sbjct: 134 GLTPEQVVA 142

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 13/107 (12%), Positives = 26/107 (24%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +      +       +     A       ++L+       + R              A  
Sbjct: 2   EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALT 61

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
              +NL  + V A       ++ L   +  +     A  L P    A
Sbjct: 62  GAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 108

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 8/86 (9%), Positives = 21/86 (24%), Gaps = 7/86 (8%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                   +   + +    +A  L        ++         S +   +    A+    
Sbjct: 418 HDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALT 477

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDF 555
            +         A   LG  + A++  
Sbjct: 478 ND------HLVALACLG-GRPALDAV 496

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 79.4 bits (197), Expect = 7e-18
 Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 2/97 (2%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +    +AI +Y +A++L+  +A  + N   AY + G + +A     KA+ LD
Sbjct: 41  LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 99

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
            ++ +A+   G A    G Y EAIE +  AL L+P +
Sbjct: 100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 74.7 bits (185), Expect = 3e-16
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +  + +AI +Y +A++L+  +A  + N   AY + G + +A     KA+ LD
Sbjct: 7   LGN-AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
            ++ +A+   G A    G Y EAIE +  AL L+P
Sbjct: 66  PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 56.2 bits (137), Expect = 7e-10
 Identities = 23/66 (34%), Positives = 34/66 (51%)

Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSY 557
           A  + N   AY + G + +A     KA+ LD ++ +A+   G A    G Y EAIE +  
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

Query: 558 ALVLEP 563
           AL L+P
Sbjct: 61  ALELDP 66

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 85.1 bits (210), Expect = 9e-18
 Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 6/162 (3%)

Query: 406 VPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAE 465
           VP G +    T    + R        +  +++   LQ   D     +   +++ +  S E
Sbjct: 15  VPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFR---DSYFETHSVE 71

Query: 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ-AEADCTKA 524
            A  K       ++  K +    E +      A     +  A   +  +   AE   +KA
Sbjct: 72  DAGRKQQDV--QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA 129

Query: 525 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566
           + L+ + V+A+ + G      G    A   FS AL       
Sbjct: 130 VKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKV 171

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 64.3 bits (156), Expect = 4e-11
 Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--------QAEAD 520
           +  +     +  + ++     A++++  +   +     AYL              QA + 
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243

Query: 521 CTKAINLDKK---NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             +A  +D+K   N   +L R T  +    Y EA+E FS A  L+P     
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP 294

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 63.1 bits (153), Expect = 1e-10
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 3/107 (2%)

Query: 472 NQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           N     K   +A+S Y +A K++    +N   + NRA  +    S+ +A    ++A  LD
Sbjct: 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL 575
               +   R     E L      +E        +  +   SL    L
Sbjct: 289 PAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHL 335

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 60.0 bits (145), Expect = 9e-10
 Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 460 QKQSAEIAKEKGNQAYKD--KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA 517
            +  A+    KG  A         +A    ++A+KL       ++     Y + G    A
Sbjct: 98  AQVEAQALMLKGK-ALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSA 156

Query: 518 EADCTKAINLDKK--------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
               + A+   K          V   L+  +  E   +  +++     A+ ++  + R+
Sbjct: 157 HTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 13/119 (10%), Positives = 38/119 (31%), Gaps = 18/119 (15%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---------SF 514
            E   + G   +K      A + ++ A+    N  +   N +    +             
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQTDSGDEHSRHV 195

Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTA--------REMLGYYKEAIEDFSYALVLEPTN 565
           + +      A+ +D  + +++   G A         +     ++A+  ++ A  ++   
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 15/110 (13%), Positives = 31/110 (28%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
           N     E   E+G    K     +A   +    +        + +      E+     A 
Sbjct: 16  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAI 75

Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
                A  LD K++  +     +         A+      L+ +P  ++ 
Sbjct: 76  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 12/99 (12%), Positives = 33/99 (33%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G        +  A +    A++L  ++A  ++   A         +A     +A++++ 
Sbjct: 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP 237

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             V+       +   +  Y  A +    A+ ++      
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTP 276

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 17/99 (17%), Positives = 44/99 (44%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +        ++ +  +    A+++N N+A  +++    Y  S ++  A A+  +A+ L  
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            + + + + G         +EA++ ++ AL + P   R 
Sbjct: 204 DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRV 242

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 15/109 (13%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G    ++++   AI     A  L+  +   ++  A ++    +   A A     +    
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 530 KNVKAY---------------LRRGTAREMLGYYKEAIEDFSYALVLEP 563
           +  +                             Y+E       AL + P
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP 169

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 63.8 bits (156), Expect = 3e-11
 Identities = 11/90 (12%), Positives = 26/90 (28%)

Query: 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538
             L+  + Y                   + L+  +  +A            +  +A+   
Sbjct: 2   HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61

Query: 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           G  +        AI   ++A +L+P +   
Sbjct: 62  GLTQAENEKDGLAIIALNHARMLDPKDIAV 91

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 9/114 (7%), Positives = 28/114 (24%), Gaps = 15/114 (13%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYS---------------NRAAAYLESGSF 514
                  +     A++     +          S               +    +     +
Sbjct: 95  LAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEY 154

Query: 515 LQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +       A+ ++  + + +   G    +   Y  A  +   A+ L P + + 
Sbjct: 155 RECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQL 208

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 4/88 (4%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G     +  +  +A+  Y  A+ +N        N A +Y     +  A     +AI + 
Sbjct: 212 LGA-TLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270

Query: 529 KKNVKAYLRRG--TAREMLGYYKEAIED 554
                          R M  +++  +  
Sbjct: 271 VGGTTPTGEASREATRSMWDFFRMLLNV 298

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 12/57 (21%), Positives = 16/57 (28%)

Query: 512 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           G  LQ   D     N      +  +  G +   L    EA   F       P  + A
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEA 57

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 77.1 bits (190), Expect = 5e-17
 Identities = 25/140 (17%), Positives = 38/140 (27%), Gaps = 12/140 (8%)

Query: 436 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG 495
           N  A+L++   I                 +         Y   +  +A  F+      + 
Sbjct: 20  NSGATLKDINAI------------PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF 67

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 555
            N  Y    AA Y     F QA      A  L K +       G  +  L    +A E F
Sbjct: 68  YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECF 127

Query: 556 SYALVLEPTNKRASLSADRL 575
              +      K    +   L
Sbjct: 128 ELVIQHSNDEKLKIKAQSYL 147

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 63.3 bits (154), Expect = 4e-12
 Identities = 11/100 (11%), Positives = 32/100 (32%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           E  + +      + + +   +   +  +      + A  +   G   +AE         D
Sbjct: 7   ENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD 66

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             NV   +      ++   +++A + ++ A  L   +   
Sbjct: 67  FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 14/94 (14%), Positives = 32/94 (34%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           KG    K  ++ +A+    +    +  +     +   AY+++G+  +      +++    
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
            NVK     G     +  Y  A+          P
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP 107

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 2/95 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G  AY       +       ++    +N    +     Y++   +  A     K    +
Sbjct: 48  LGI-AYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN 106

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
             N     R G A + LG + EAI+ F  AL L P
Sbjct: 107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 76.0 bits (188), Expect = 3e-16
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G   Y   +++  A+    +  + N  N         A    G F +A      A+ L 
Sbjct: 82  LGL-TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR 140

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
               K +     + E +G ++EA+  F  A  L+      
Sbjct: 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 15/78 (19%), Positives = 29/78 (37%)

Query: 491 IKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE 550
           +  +     YY ++  ++ ++G + QA     +  + D  +V   L  G A    G    
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 551 AIEDFSYALVLEPTNKRA 568
             E    +L   P N + 
Sbjct: 61  GTELLERSLADAPDNVKV 78

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            G  A  +     +AI  +  A+ L  N    +   A +Y + G   +A     KA  LD
Sbjct: 116 LGV-ALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174

Query: 529 KKNVKAY 535
           +      
Sbjct: 175 EGASVEL 181

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 1/134 (0%)

Query: 436 NMYASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
           +     Q Q  ++   K    +T N  +    A E+G +  K+      I F   AI  +
Sbjct: 36  SENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95

Query: 495 GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIED 554
             +A  +        E+ +   A     + + L   N+KA +    +     + ++A E 
Sbjct: 96  PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEA 155

Query: 555 FSYALVLEPTNKRA 568
               +   P  K  
Sbjct: 156 LKNWIKQNPKYKYL 169

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 18/99 (18%), Positives = 43/99 (43%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G   +   ++ +AI  +  A+ +   + + ++   A         +A    T+A+ +  
Sbjct: 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP 278

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             +++    G +   LG Y+EA+ +F  AL L+  ++  
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 73.2 bits (180), Expect = 3e-14
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 459 NQKQSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFL 515
             K+ +     + +++  D          Y EA   NG+  +    +     +  SG F 
Sbjct: 171 KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230

Query: 516 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           +A      A+ +  ++   + R G         +EA+E ++ AL ++P   R+
Sbjct: 231 RAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 24/130 (18%), Positives = 42/130 (32%), Gaps = 4/130 (3%)

Query: 443 EQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----A 498
           E+A  A +S        Q +  E+A+       ++ Q    +S   +    +  N     
Sbjct: 6   ERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDW 65

Query: 499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA 558
                     L+ G           AI  D  + +A+   G  +      + AI      
Sbjct: 66  PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRC 125

Query: 559 LVLEPTNKRA 568
           L L+P N +A
Sbjct: 126 LELQPNNLKA 135

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 69.7 bits (171), Expect = 5e-13
 Identities = 14/99 (14%), Positives = 29/99 (29%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G    +++    AI      ++L  NN       A +Y  +     A       I  + 
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           K       +  +  +     ++  D S    ++     A
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 13/105 (12%)

Query: 474 AYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA-------- 524
           +Y +      A       IK N        N+  +   +    ++  D +          
Sbjct: 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201

Query: 525 ----INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
                N D  +       G    + G +  AI+ F+ AL + P +
Sbjct: 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 12/73 (16%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
           +A+  YT A+++         N   + +  G++ +A ++   A++L +K+         A
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324

Query: 542 --REMLGYYKEAI 552
               +    + A+
Sbjct: 325 ISGNIWAALRIAL 337

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 15/127 (11%), Positives = 36/127 (28%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
            +               N  +      E+G +  ++     A+  +  A++ +  +   +
Sbjct: 42  DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAW 101

Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561
                   E+   L A +   + + L   N  A +    +       ++A E     L  
Sbjct: 102 QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY 161

Query: 562 EPTNKRA 568
            P     
Sbjct: 162 TPAYAHL 168

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 2/105 (1%)

Query: 466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTK 523
            +K        D  +L+    +  A++L+  +            +  SG + +A    T 
Sbjct: 183 PSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           A+++   +   + + G         +EA+  +  AL L+P   R+
Sbjct: 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRS 287

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 20/99 (20%), Positives = 43/99 (43%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G       ++ KA+  +T A+ +  N+   ++   A         +A A   +A+ L  
Sbjct: 223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 282

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             +++    G +   LG ++EA+E F  AL ++  ++  
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 321

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 15/114 (13%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G    +++Q L AIS     ++L  +N T     A ++       QA       +    
Sbjct: 104 LGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163

Query: 530 KNVKAYLRR---------GTAREMLGY------YKEAIEDFSYALVLEPTNKRA 568
                             G ++ +LG       + E  E F  A+ L+PT+   
Sbjct: 164 AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 11/89 (12%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR--- 538
           +A++ Y  A++L         N   + +  G+  +A     +A+N+ +K+          
Sbjct: 269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328

Query: 539 --------GTAREMLGYYKEAIEDFSYAL 559
                     A  MLG         +  L
Sbjct: 329 SENIWSTLRLALSMLGQSDAYGAADARDL 357

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 17/99 (17%), Positives = 33/99 (33%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G       +  +A  +++++  ++      +   A ++   G   QA +  T A  L +
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ 438

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
                YL  G     LG    A E    +  L   +   
Sbjct: 439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 77.6 bits (191), Expect = 3e-15
 Identities = 16/107 (14%), Positives = 43/107 (40%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
             ++S+++   K +  +   +++  ++  T+ ++++  N   Y    A+  ESG   +  
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359

Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
                 ++   +    +L  G     +    EA   FS +  ++P  
Sbjct: 360 LISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 76.4 bits (188), Expect = 8e-15
 Identities = 20/132 (15%), Positives = 38/132 (28%)

Query: 434 VQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493
           V N   +  E+ D+  K   ST +                    +  L+    Y  +I  
Sbjct: 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING 300

Query: 494 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
              ++     +A        F+   A  TK + +D  N+  Y     +    G   +   
Sbjct: 301 LEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYL 360

Query: 554 DFSYALVLEPTN 565
             +  +   P  
Sbjct: 361 ISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 7/107 (6%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNRAAAYLESGSFLQAEADC 521
           E G  A+       AI+ +  A+ L           A  ++N   AY +   +  A    
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            + + L   +   +               AI     +L + P    A
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 72.6 bits (178), Expect = 2e-13
 Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 2/101 (1%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             + ++    +  +AIS YT A +L       Y      +++ G+ L A      +  L 
Sbjct: 413 FAH-SFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 569
           + +       G         + AI  F  AL+L    +   
Sbjct: 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 72.2 bits (177), Expect = 2e-13
 Identities = 13/99 (13%), Positives = 33/99 (33%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                ++  +  K      + +  +   A  +      YL      +A    +K+  +D 
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           +   A++    +  + G + +AI  ++ A  L       
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.3 bits (172), Expect = 7e-13
 Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 7/103 (6%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL-- 527
            G Q  +    L A  +   +  L   +    +              A      A+ L  
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506

Query: 528 -----DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
                +K     +   G A   L  Y  AI+  +  L+L   +
Sbjct: 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 14/72 (19%), Positives = 27/72 (37%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G+   K K +  AI    + + L+ N+A  ++  A  YL       A     +++ +  
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581

Query: 530 KNVKAYLRRGTA 541
             + A      A
Sbjct: 582 NEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 14/134 (10%), Positives = 39/134 (29%), Gaps = 3/134 (2%)

Query: 435 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
             +  +   + D    +KL       K  A +   +G        + +A   Y EA+ ++
Sbjct: 171 NLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD 230

Query: 495 GNNATYYSNRAAAYLESGSFLQAEA---DCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551
                 +    + +L +           + +     D   +++       +         
Sbjct: 231 AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRR 290

Query: 552 IEDFSYALVLEPTN 565
            ED+  ++     +
Sbjct: 291 AEDYLSSINGLEKS 304

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 1/100 (1%)

Query: 470 KGNQAYKDKQWLKAISF-YTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             +    D++W   +   Y+   K +                    L+   D   +IN  
Sbjct: 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           +K+    L +     +   + + +   +  L ++P N   
Sbjct: 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 19/125 (15%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQA--- 517
             +   A            + +A    T+    N ++A  Y   A   ++   +  A   
Sbjct: 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGALNL 172

Query: 518 --------------EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
                              +   + K        RG     L  +  A E +  AL+++ 
Sbjct: 173 LGETNPFRKDEKNANKLLMQDGGI-KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231

Query: 564 TNKRA 568
               A
Sbjct: 232 KCYEA 236

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 72.4 bits (179), Expect = 1e-15
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 2/95 (2%)

Query: 470 KGNQAYKD-KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY     + +AI +Y +A++L+ NNA  + N   AY + G + +A     KA+ LD
Sbjct: 15  LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
             N +A+   G A    G Y EAIE +  AL L+P
Sbjct: 74  PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 62.4 bits (153), Expect = 4e-12
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +    +AI +Y +A++L+ NNA  + N   AY + G + +A     KA+ LD
Sbjct: 49  LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 107

Query: 529 KKNVKAYLRRGTAREMLG 546
             N +A    G A++  G
Sbjct: 108 PNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 555
           N+A  + N   AY + G + +A     KA+ LD  N +A+   G A    G Y EAIE +
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 556 SYALVLEP 563
             AL L+P
Sbjct: 67  QKALELDP 74

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 12/83 (14%), Positives = 21/83 (25%)

Query: 483 AISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR 542
                   +    +N          Y E   F  A      A++ D     A+   G   
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 543 EMLGYYKEAIEDFSYALVLEPTN 565
           +  G    A + +   L    + 
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSR 86

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 7/74 (9%), Positives = 19/74 (25%), Gaps = 4/74 (5%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           G    + +Q+  A+     A+  +   +  +          G    A       +   + 
Sbjct: 26  GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

Query: 531 NVKAYLRRGTAREM 544
                      +E+
Sbjct: 86  RGDQ----QVVKEL 95

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 76.2 bits (187), Expect = 1e-14
 Identities = 14/129 (10%), Positives = 31/129 (24%), Gaps = 1/129 (0%)

Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499
           +++           +       Q   IA          +   + +    +A  L      
Sbjct: 169 AMEAVHASRNALTGAPLNLTPAQVVAIA-SNNGGKQALETVQRLLPVLCQAHGLTPAQVV 227

Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 559
             ++         +  +      +A  L    V A       ++ L   +  +     A 
Sbjct: 228 AIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAH 287

Query: 560 VLEPTNKRA 568
            L P    A
Sbjct: 288 GLTPDQVVA 296

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 75.1 bits (184), Expect = 3e-14
 Identities = 13/107 (12%), Positives = 27/107 (25%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                    G      +   + +    +A  L  +     ++         +  +     
Sbjct: 292 DQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVL 351

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A  L    V A    G  ++ L   +  +     A  L P    A
Sbjct: 352 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 74.7 bits (183), Expect = 4e-14
 Identities = 11/100 (11%), Positives = 25/100 (25%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                    +   + +    +A  L  +     ++         +  +      +A  L 
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
              V A       ++ L   +  +     A  L P    A
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 364

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 73.9 bits (181), Expect = 7e-14
 Identities = 12/107 (11%), Positives = 26/107 (24%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                           +   + +    +A  L  +     ++         +  +     
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A  L    V A    G  ++ L   +  +     A  L P    A
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA 330

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 70.4 bits (172), Expect = 8e-13
 Identities = 16/127 (12%), Positives = 30/127 (23%), Gaps = 1/127 (0%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
            E            +   Q Q   IA          +   + +    +A  L        
Sbjct: 578 LETVQRLLPVLCQAHGLTQVQVVAIA-SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAI 636

Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561
           ++         +  +      +A  L    V A    G  ++ L   +  +     A  L
Sbjct: 637 ASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 696

Query: 562 EPTNKRA 568
                 A
Sbjct: 697 TQEQVVA 703

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 70.4 bits (172), Expect = 9e-13
 Identities = 12/107 (11%), Positives = 27/107 (25%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                    G      +   + +    +A  L  +     ++         +  +     
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A  L +  V A       ++ L   +  +     A  L P    A
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA 635

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 70.1 bits (171), Expect = 1e-12
 Identities = 12/99 (12%), Positives = 26/99 (26%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
                   +   + +    +A  L  +     ++         +  +      +A  L  
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             V A    G  ++ L   +  +     A  L P    A
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 69.7 bits (170), Expect = 2e-12
 Identities = 12/107 (11%), Positives = 25/107 (23%), Gaps = 1/107 (0%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                           +   + +    +A  L  +     ++         +  +     
Sbjct: 326 DQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 385

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A  L    V A    G  +  L   +  +     A  L P    A
Sbjct: 386 CQAHGLTPDQVVAIASNGGKQA-LETVQRLLPVLCQAHGLTPDQVVA 431

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 69.3 bits (169), Expect = 2e-12
 Identities = 11/109 (10%), Positives = 24/109 (22%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
                                 + +    +A  L  +     ++         +  +   
Sbjct: 493 TPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP 552

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
              +A  L    V A    G  ++ L   +  +     A  L      A
Sbjct: 553 VLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVA 601

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.9 bits (168), Expect = 2e-12
 Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 1/127 (0%)

Query: 442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYY 501
            E            +     Q   IA          +   + +    +A  L  +     
Sbjct: 612 LETVQRLLPVLCQAHGLTPAQVVAIA-SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAI 670

Query: 502 SNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561
           ++         +  +      +A  L ++ V A       ++ L   +  +     A  L
Sbjct: 671 ASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGL 730

Query: 562 EPTNKRA 568
            P    A
Sbjct: 731 TPDQVVA 737

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 68.1 bits (166), Expect = 4e-12
 Identities = 11/107 (10%), Positives = 23/107 (21%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                           +   + +    +   L        ++         +  Q     
Sbjct: 427 DQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVL 486

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A  L    V A       ++ L   +  +     A  L P    A
Sbjct: 487 CQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVA 533

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.7 bits (165), Expect = 5e-12
 Identities = 11/107 (10%), Positives = 25/107 (23%), Gaps = 1/107 (0%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
                    G      +   + +    +A  L  +     ++         +  +     
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVL 418

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A  L    V A       ++ L   +  +        L P    A
Sbjct: 419 CQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVA 465

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.4 bits (164), Expect = 7e-12
 Identities = 11/97 (11%), Positives = 24/97 (24%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
             G      +   + +    +A  L        ++         +  +      +A  L 
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
              V A       ++ L   +  +     A  L P  
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 67.4 bits (164), Expect = 8e-12
 Identities = 12/87 (13%), Positives = 24/87 (27%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
           + +    +A  L        ++         +  +      +A  L    V A    G  
Sbjct: 685 RLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGG 744

Query: 542 REMLGYYKEAIEDFSYALVLEPTNKRA 568
           ++ L   +  +     A  L P    A
Sbjct: 745 KQALETVQRLLPVLCQAHGLTPAQVVA 771

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 64.7 bits (157), Expect = 6e-11
 Identities = 10/87 (11%), Positives = 24/87 (27%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
           + +    +A  L  +     ++         +  +      +   L    V A       
Sbjct: 413 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGG 472

Query: 542 REMLGYYKEAIEDFSYALVLEPTNKRA 568
           ++ L   ++ +     A  L P    A
Sbjct: 473 KQALETVQQLLPVLCQAHGLTPDQVVA 499

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 62.0 bits (150), Expect = 4e-10
 Identities = 10/99 (10%), Positives = 25/99 (25%)

Query: 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538
              + +    +A  L  +     ++         +  +      +A  L    V A    
Sbjct: 716 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASN 775

Query: 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577
              ++ L   +  +        L      A  S    ++
Sbjct: 776 IGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQ 814

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 13/87 (14%), Positives = 22/87 (25%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
            A       ++L+       + R              A     +NL    V A       
Sbjct: 142 DAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGG 201

Query: 542 REMLGYYKEAIEDFSYALVLEPTNKRA 568
           ++ L   +  +     A  L P    A
Sbjct: 202 KQALETVQRLLPVLCQAHGLTPAQVVA 228

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 10/96 (10%), Positives = 24/96 (25%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
           + +    +A  L        ++         +  +      +   L    V A       
Sbjct: 753 RLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGG 812

Query: 542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577
           ++ L   +  +     A  L      A  S    ++
Sbjct: 813 KQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQ 848

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 3/98 (3%)

Query: 470 KGNQAYKDKQWL--KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
            G   Y         A  + ++A  L       +     ++       QA A    A  L
Sbjct: 96  VGC-YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154

Query: 528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
            K      L  G    +    K A   FS AL + P +
Sbjct: 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED 192

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 71.6 bits (176), Expect = 9e-14
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 9/109 (8%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNG---------NNATYYSNRAAAYLESGSFLQAEA 519
           E G  A+++ +W  A  ++ +A++                  +N      +   + +A  
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
              +A+ L  +N   Y   G    ++G ++ A++ F  AL L   +  +
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 20/86 (23%), Positives = 36/86 (41%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G+   K K++ +A+ ++ +A+ L   NA+ YS     +   G+F  A      A+ L +
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDF 555
            +  +    G   EM     EA    
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYIGA 327

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 15/92 (16%), Positives = 30/92 (32%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA 541
           +A++ Y  A +L              Y  + +   AE   ++A+++  ++       G  
Sbjct: 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVV 202

Query: 542 REMLGYYKEAIEDFSYALVLEPTNKRASLSAD 573
               G +K A + F  AL              
Sbjct: 203 AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 17/130 (13%), Positives = 43/130 (33%), Gaps = 5/130 (3%)

Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT 499
           S  + ++      +       +++ ++      + Y +  +       +  ++ +  +A+
Sbjct: 2   SYNKPSETVIPESVDGL----QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS 57

Query: 500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYA 558
                    +E     +      K ++L   N  ++   G    M+G   + A    S A
Sbjct: 58  CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA 117

Query: 559 LVLEPTNKRA 568
             LE T   A
Sbjct: 118 TTLEKTYGPA 127

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 9/105 (8%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G +         A  F+++A+ +   +            ++G +  AE     A+   K
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224

Query: 530 ---------KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
                    K        G     L  Y EA++    ALVL P N
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN 269

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 1/100 (1%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLD 528
                 +  +  +      + + L  +N   +      YL  G     A    +KA  L+
Sbjct: 62  HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE 121

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           K    A++  G +  +   + +A+  +  A  L       
Sbjct: 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLP 161

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 69.9 bits (172), Expect = 7e-14
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           +G   Y    +  KA +   +A+ L  +     S  A  YL  G   +A A   KA+   
Sbjct: 124 RGL-VYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
            K++   +R  +A  + G  +EA    + AL    
Sbjct: 182 PKDLDLRVRYASALLLKGKAEEAAR--AAALEHHH 214

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 68.3 bits (168), Expect = 3e-13
 Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 1/105 (0%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
             + ++  ++        +A+S   +A ++N   A  +  R   Y   G   +AEA   +
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           A+ L +   +           +G   EA+  ++ AL   P +   
Sbjct: 144 ALAL-EDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 11/105 (10%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
            G Q Y   ++  A++ +  A+K N  +       A   L+ G    A  +    +    
Sbjct: 11  LGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP 70

Query: 530 KNVKAYLRRGTA-----------REMLGYYKEAIEDFSYALVLEP 563
           + +  Y+    A               GY ++A+     A  + P
Sbjct: 71  RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 66.8 bits (164), Expect = 9e-13
 Identities = 18/106 (16%), Positives = 30/106 (28%), Gaps = 13/106 (12%)

Query: 470 KGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-----------SGSFLQA 517
                         A+      +         Y   + AY+             G   QA
Sbjct: 45  LAR-TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQA 103

Query: 518 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
            +    A  ++ +    +L+RG    +LG   +A      AL LE 
Sbjct: 104 LSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 9/68 (13%), Positives = 20/68 (29%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 555
                           G +  A     +A+  + ++ +A       +  LG    A+E+ 
Sbjct: 3   TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENG 62

Query: 556 SYALVLEP 563
              +   P
Sbjct: 63  KTLVARTP 70

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                Y     L +A++ Y +A++    +       A+A L  G   +A        +  
Sbjct: 157 LAE-LYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 15/105 (14%), Positives = 29/105 (27%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
           N     E   E+G    K     +A   +    +        + +      E+     A 
Sbjct: 12  NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71

Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
                A  LD K++  +     +         A+      L+ +P
Sbjct: 72  IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 9/66 (13%), Positives = 23/66 (34%)

Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562
               + L+  +  +A          + +  +A+   G  +        AI   ++A +L+
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81

Query: 563 PTNKRA 568
           P +   
Sbjct: 82  PKDIAV 87

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 9/69 (13%), Positives = 24/69 (34%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +  E  +  G    ++++   AI     A  L+  +   ++  A ++    +   A A  
Sbjct: 49  EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASL 108

Query: 522 TKAINLDKK 530
              +    +
Sbjct: 109 RAWLLSQPQ 117

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 66.1 bits (161), Expect = 4e-13
 Identities = 17/88 (19%), Positives = 32/88 (36%)

Query: 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT 540
                      +++ +      + A    +SG +  A         LD  + + +L  G 
Sbjct: 4   GSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA 63

Query: 541 AREMLGYYKEAIEDFSYALVLEPTNKRA 568
            R+ +G Y  AI  +SY  V++    R 
Sbjct: 64  CRQAMGQYDLAIHSYSYGAVMDIXEPRF 91

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 16/83 (19%), Positives = 26/83 (31%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           G       Q+  AI  Y+    ++     +  + A   L+ G   +AE+    A  L   
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 531 NVKAYLRRGTAREMLGYYKEAIE 553
             +          ML   K   E
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKKE 144

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 8/57 (14%), Positives = 16/57 (28%)

Query: 512 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           G              +    ++        +   G Y++A   F    VL+  + R 
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRF 57

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
            Q + I  +   +  + + + +A +   +A+K +  N   +  RA  Y       +A+  
Sbjct: 5   NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES 64

Query: 521 CTKAINLDKKNVKAYLRRGTA-REMLGYYKEAIEDFSYAL 559
             +A+++   + +     G      L    E++  F  AL
Sbjct: 65  FRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 2/91 (2%)

Query: 482 KAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539
           ++++++ +A+             N+     + G F  AEA   +++    +   A+    
Sbjct: 95  ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA 154

Query: 540 TAREMLGYYKEAIEDFSYALVLEPTNKRASL 570
             + + G   +A   F          +   L
Sbjct: 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 19/73 (26%), Positives = 30/73 (41%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 555
             +   +  A  Y+    + QA A    A+  D KN  A+L R    + L    +A E F
Sbjct: 6   QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESF 65

Query: 556 SYALVLEPTNKRA 568
             AL ++P +   
Sbjct: 66  RQALSIKPDSAEI 78

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           KG  + K  Q+  A ++   ++         +   A   + +G    A+    K  +  +
Sbjct: 119 KGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE 178

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
                 L  G           A   + Y   L+ 
Sbjct: 179 VLQADDLLLGWKIA--KALGNAQAAYEYEAQLQA 210

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 71.0 bits (173), Expect = 5e-13
 Identities = 24/98 (24%), Positives = 40/98 (40%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
            +   +  +  +A+  Y EAI+++   A  YSN      E      A    T+AI ++  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
              A+    +  +  G   EAI  +  AL L+P    A
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 68.7 bits (167), Expect = 2e-12
 Identities = 19/98 (19%), Positives = 41/98 (41%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
            N   +     +A+  Y +A+++    A  +SN A+   + G   +A     +AI +   
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
              AY   G   + +   + A++ ++ A+ + P    A
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA 113

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 61.7 bits (149), Expect = 4e-10
 Identities = 22/108 (20%), Positives = 43/108 (39%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
             A+     GN   + +    A+  YT AI++N   A  +SN A+ + +SG+  +A A  
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS 569
             A+ L      AY       +++  + +  E     + +       +
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKN 182

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 51.3 bits (122), Expect = 7e-07
 Identities = 15/70 (21%), Positives = 30/70 (42%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 555
            +A   +N A    E G+  +A     KA+ +  +   A+    +  +  G  +EA+  +
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66

Query: 556 SYALVLEPTN 565
             A+ + PT 
Sbjct: 67  KEAIRISPTF 76

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 69.5 bits (170), Expect = 1e-12
 Identities = 13/107 (12%), Positives = 26/107 (24%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           Q         +                  + L+  +    +             +A    
Sbjct: 21  QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +A +   ++    L  G A E  G  + A   ++ A  L P     
Sbjct: 81  QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 15/90 (16%), Positives = 27/90 (30%)

Query: 479 QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538
              + +     A++    +   +   A A L  G     E    + + L   + +A  R 
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 539 GTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           G  R     + EA      A    P +   
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 1/110 (0%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
              E     G   +  ++  +A     +A      +         A  ++G    A A  
Sbjct: 55  GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS 571
           T+A  L  +      +    R  L  +  A++  S  +         ++ 
Sbjct: 115 TRAHQLLPEEPYITAQLLNWRRRLCDW-RALDVLSAQVRAAVAQGVGAVE 163

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 9/58 (15%), Positives = 17/58 (29%)

Query: 511 SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           +    +       A+    ++  A+L    A   +G            L L P +  A
Sbjct: 2   TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA 59

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 16/124 (12%), Positives = 43/124 (34%)

Query: 436 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG 495
           +  + L  +               + ++ +   + G    +     +A     +A++++ 
Sbjct: 9   HHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP 68

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 555
           ++A  ++  A  +        A+ +  KA+  D +N +     G        Y+EA +  
Sbjct: 69  SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL 128

Query: 556 SYAL 559
             A 
Sbjct: 129 LEAS 132

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 18/82 (21%), Positives = 30/82 (36%)

Query: 487 YTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG 546
             +  K        Y      YL+ G+  QA+    KA+ +D  +  A+       +   
Sbjct: 26  PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM 85

Query: 547 YYKEAIEDFSYALVLEPTNKRA 568
             K A E++  AL  +  N R 
Sbjct: 86  EPKLADEEYRKALASDSRNARV 107

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 13/98 (13%), Positives = 33/98 (33%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           G  + + K+  +A  ++ ++++LN N  +     A    +   ++ A            +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           N ++ L      ++      A         L P +   
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 61.5 bits (150), Expect = 8e-11
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 2/89 (2%)

Query: 482 KAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG 539
           +A     EA +  L    +  + N     L+     QA+    K++ L++      L   
Sbjct: 123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182

Query: 540 TAREMLGYYKEAIEDFSYALVLEPTNKRA 568
                   Y  A + +         N R+
Sbjct: 183 DLLYKEREYVPARQYYDLFAQGGGQNARS 211

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI 552
           +  ++  ++ +       S      + +  K      +   AY++ G      G  ++A 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSH---MGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAK 57

Query: 553 EDFSYALVLEPTNKRA 568
                AL ++P++  A
Sbjct: 58  VPLRKALEIDPSSADA 73

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 19/115 (16%), Positives = 43/115 (37%), Gaps = 4/115 (3%)

Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL 527
                +    +    A++   +A + N N     S  A+ +  +  + +AE    K  + 
Sbjct: 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363

Query: 528 DKKNVKA---YLRRGTARE-MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578
           +   V     +LR G  +   +    +AI  F   + +   ++      D+L+K+
Sbjct: 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKI 418

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 14/117 (11%), Positives = 28/117 (23%), Gaps = 19/117 (16%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
                + ++  +      EA++          + A  Y       +A     KA+     
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279

Query: 531 NVKAYLRRGTA-------------------REMLGYYKEAIEDFSYALVLEPTNKRA 568
           N   + + G                     R++L     A+     A        R 
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 9/116 (7%)

Query: 462 QSAEIAKEKGNQAYKD--KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE- 518
           +S E+  E+G    K    Q  +A   + +A++    N  + S  A A     ++  ++ 
Sbjct: 134 ESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193

Query: 519 --ADCTKAINLDKKNVKAYLRRGTA----REMLGYYKEAIEDFSYALVLEPTNKRA 568
                 +AI L+  N    +         RE      E  +    AL   P     
Sbjct: 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDV 249

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 25/152 (16%), Positives = 41/152 (26%), Gaps = 19/152 (12%)

Query: 436 NMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-- 493
           N+        D   K    T   N++  A +        +   Q   A+    +A +L  
Sbjct: 23  NLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQ 82

Query: 494 -------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA--------YLRR 538
                     +   + N A  Y   G     +    K  ++ +K                
Sbjct: 83  QEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142

Query: 539 GTAREMLG--YYKEAIEDFSYALVLEPTNKRA 568
           G  R   G    + A   F  AL  +P N   
Sbjct: 143 GWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 10/98 (10%)

Query: 473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV 532
           Q Y+ K   KAI  + E +K+N  +            +    LQ  A     ++ +  + 
Sbjct: 381 QLYQMKCEDKAIHHFIEGVKINQKSR--------EKEKMKDKLQKIAK--MRLSKNGADS 430

Query: 533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL 570
           +A       +E+    ++A ED    L        AS 
Sbjct: 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS 468

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 61.8 bits (149), Expect = 2e-11
 Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 23/141 (16%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------------GNNATYYSNRAAA 507
           +   A +A     +     ++ +A +    A++++            G +A  ++  A A
Sbjct: 7   EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEA 66

Query: 508 YLESGSFLQAEADCTKAINLDKKN-----------VKAYLRRGTAREMLGYYKEAIEDFS 556
                SF +A     KA++   +            + A   R  A + LG   EA+ +F 
Sbjct: 67  LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126

Query: 557 YALVLEPTNKRASLSADRLRK 577
             + +    K  +   +R+ +
Sbjct: 127 KVVEMIEERKGETPGKERMME 147

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 64.4 bits (156), Expect = 3e-11
 Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNG--NNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
                 +KQ     +     + L    N +  Y  +A + L  G   ++       I+L+
Sbjct: 248 SQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
             +   Y+  G   EM G  +EA + +  A  L P  
Sbjct: 308 M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 10/97 (10%)

Query: 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAY--------LESGSFLQAEADCTKAINLDK 529
           K   +A     E ++ +       + +A           L+         +    + L +
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272

Query: 530 KNVKA--YLRRGTAREMLGYYKEAIEDFSYALVLEPT 564
            N  +  Y  +  +  + G   E+ +  +  + LE +
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 4/131 (3%)

Query: 428 RFLLDTVQNMYASLQEQADIATKSKLSTNTF--NQKQSAEIAKEKGNQAYKDKQWLKAIS 485
           + L+D V++    L E+   A  +++            + I + K   A    +  ++  
Sbjct: 239 KALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQ 298

Query: 486 FYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL-RRGTAREM 544
                I L   +   Y      Y   G   +A      A NL       Y    G  +  
Sbjct: 299 AINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTS 357

Query: 545 LGYYKEAIEDF 555
           + Y    ++ F
Sbjct: 358 VPYVVPYLDKF 368

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 3/88 (3%)

Query: 482 KAISFYTEAIKLNGNNATY---YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR 538
           +A+ +Y +AI            Y    + +   G + +AEA     +     +    +  
Sbjct: 8   QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67

Query: 539 GTAREMLGYYKEAIEDFSYALVLEPTNK 566
                 LG Y++ +E     +     ++
Sbjct: 68  AMVLYNLGRYEQGVELLLKIIAETSDDE 95

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 62.5 bits (151), Expect = 8e-11
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 442 QEQADIATKSKLSTNTFNQKQS-AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATY 500
            ++ D+A K        ++  +  ++A    + A   ++   A   + E           
Sbjct: 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLL 202

Query: 501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYAL 559
            + +AA ++  G +  AE    +A++ D  + +  +      + LG   E    +   L
Sbjct: 203 LNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 50.1 bits (119), Expect = 8e-07
 Identities = 14/112 (12%), Positives = 28/112 (25%), Gaps = 2/112 (1%)

Query: 456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-- 513
            T +Q  S E          K  +   A     +    + +        A   L +G   
Sbjct: 122 RTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK 181

Query: 514 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
              A     +  +     +     +       G ++ A      AL  +  +
Sbjct: 182 LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 14/88 (15%), Positives = 28/88 (31%)

Query: 478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR 537
           K   + +++ T  I+    N   + +R           Q        +N D KN  A+  
Sbjct: 146 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQH 205

Query: 538 RGTAREMLGYYKEAIEDFSYALVLEPTN 565
           R    +    +   ++     L  +  N
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRN 233

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 56.6 bits (136), Expect = 1e-08
 Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 1/100 (1%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT-KAINLD 528
                 +D++  +A     +AI+LN  N T +  R          L  E +     I   
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            KN + +  R    E L    + +E  +  L  +  N  A
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHA 202

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 11/102 (10%), Positives = 30/102 (29%), Gaps = 6/102 (5%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +       +   + + F  + +  +  N   + +R     E   +        + +  D 
Sbjct: 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV 231

Query: 530 KNVKAYLRRGTAREMLGYY------KEAIEDFSYALVLEPTN 565
           +N   + +R         Y      +  ++     + L P N
Sbjct: 232 RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN 273

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 56.6 bits (138), Expect = 2e-10
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)

Query: 470 KGNQAYKDKQWL-KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
            GN AY  +    +AI +Y +A++L+ NNA  + N   AY + G + +A     KA+ LD
Sbjct: 15  LGN-AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73

Query: 529 KKNVKAYLRRGTAREMLG 546
             N +A    G A++  G
Sbjct: 74  PNNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 53.9 bits (131), Expect = 2e-09
 Identities = 25/68 (36%), Positives = 35/68 (51%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 555
           N+A  + N   AY + G + +A     KA+ LD  N +A+   G A    G Y EAIE +
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 556 SYALVLEP 563
             AL L+P
Sbjct: 67  QKALELDP 74

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 3/98 (3%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS---FLQAEADCTKAINL 527
           G        +  ++  Y +A++L G NA  Y+  A       S     Q  A   KA+ L
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
           D   + A +   +   M   Y +AIE +   + L    
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 3/111 (2%)

Query: 461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEAD 520
           +   +  ++  +Q    +     +    + I+ N  N+  ++     YL    +  +   
Sbjct: 7   RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66

Query: 521 CTKAINLDKKNVKAYLRRGTAREMLG---YYKEAIEDFSYALVLEPTNKRA 568
             +A+ L  +N + Y    T            +       AL L+     A
Sbjct: 67  YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 66/493 (13%), Positives = 133/493 (26%), Gaps = 147/493 (29%)

Query: 139 MPG-GSSSGAAVAVAADLVD--FSLGID--TVGGVRVPSAFCGIL-----GFRPSYGA-V 187
           + G G +  A     +  V       I    +     P     +L        P++ +  
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 188 SHMGIIPISTS---------------------LDTVGWFARDPKILRHVGH---VLLQLP 223
            H   I +                        L  V     + K          +LL   
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-Q---NAKAWNAFNLSCKILL--- 270

Query: 224 FAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLG---EYFDSKV 280
                + R   + D       + A     + +              E      +Y D + 
Sbjct: 271 -----TTRFKQVTDF------LSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRP 315

Query: 281 PSL-KGFHKTN-------GE-LKNVMRLIQRYE--FKNNHNEWIESVKPALDPDISAEIG 329
             L +    TN        E +++ +     ++    +     IES    L+P    ++ 
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 330 EMLE-------ISETVIEN--CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEM 380
           + L        I   ++       I++++   ++ L K                     +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-------------------YSL 416

Query: 381 LSEDYQNRAFSLLSIASVSGCCQV--------------TVPLGY--YDKCPTSV-----S 419
           + +  +    S+ SI  +    ++               +P  +   D  P  +     S
Sbjct: 417 VEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 420 FIARHGGDRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQ 479
            I  H      L  +++      E+  +     L      QK   +      + +  +  
Sbjct: 476 HIGHH------LKNIEH-----PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT- 523

Query: 480 WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-QAEADCTKAINLDKKNVKAYLRR 538
            L+ + FY   I    +N   Y     A L+   FL + E +   +   D       LR 
Sbjct: 524 -LQQLKFYKPYIC---DNDPKYERLVNAILD---FLPKIEENLICSKYTD------LLRI 570

Query: 539 GTAREMLGYYKEA 551
               E    ++EA
Sbjct: 571 ALMAEDEAIFEEA 583

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 56/403 (13%), Positives = 118/403 (29%), Gaps = 129/403 (32%)

Query: 227 QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGF 286
           Q  P+ I+  ++   ++    D V       T +LF   + K E + + F      ++  
Sbjct: 39  QDMPKSILSKEEIDHIIMSK-DAVSG-----TLRLFWTLLSKQEEMVQKF------VEEV 86

Query: 287 HKTNGELKNVMRLIQRYEFKNNHNEWI------ESVKPALDPDISAEIGEMLEISETVIE 340
            + N            Y       +++      E  +P++   +  E  + L     V  
Sbjct: 87  LRIN------------Y-------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 341 NCKSIRNEM----RSAISSLLKDDGILVTPTTAYPPPKLG----GKEMLSEDYQNRAFSL 392
                R +     R A+  L     +L+           G    GK  +       A  +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLI-----D-----GVLGSGKTWV-------ALDV 170

Query: 393 LSIASVSGCCQVTVPLG-YYDKCPTSVSFIARHGGDRFLLDTVQNMYA----SLQEQADI 447
                V    Q  +    ++      ++          +L+ +Q +      +   ++D 
Sbjct: 171 CLSYKV----QCKMDFKIFW------LNL-KNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAY------KDKQWLKAISF--------------- 486
           ++  KL  ++   +    +  +            ++ +   A +                
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 487 -----YTEAIKLNGNNATYYSNRA----AAYLESGSF-LQAEADCT---KAINLDKKNVK 533
                 T  I L+ ++ T   +        YL+     L  E   T   + +++    + 
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTNPRRLSI----IA 334

Query: 534 AYLRRGTAREMLGYYK--------EAIEDFSYALVLEPTNKRA 568
             +R G A      +K          IE  S   VLEP   R 
Sbjct: 335 ESIRDGLAT--WDNWKHVNCDKLTTIIES-SLN-VLEPAEYRK 373

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 1e-05
 Identities = 68/466 (14%), Positives = 131/466 (28%), Gaps = 144/466 (30%)

Query: 7   NLWVLL----GLG---LAGILLMTKKLKKNIKQDFGAF-------------IEKLQLL-- 44
              VL+    G G   +A  + ++ K++   K DF  F             +E LQ L  
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 45  ---PPPQPLP---PKAPHPLTGLSFAVSDLFDIEGY---------VTGFGHPEWARTHSA 89
              P               +  +   +  L   + Y         V              
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-------QNAKAWN 260

Query: 90  A----------SRTSTVVSTLVEGGATCIGKTVVDE------------FAYSINGTNKHY 127
           A          +R   V   L     T I  ++                   ++   +  
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLD--CRPQ 316

Query: 128 DTP-----TNPAAPSQMPGGSSSGAAVAVAADLVDF--SLGIDTVGGVRVPSAFCGILG- 179
           D P     TNP   S +        ++       D    +  D +    +  +   +L  
Sbjct: 317 DLPREVLTTNPRRLSII------AESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEP 368

Query: 180 --FRPSYGAVSHMGIIP----ISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQI 233
             +R  +     + + P    I T L ++ WF      +  V + L +     ++     
Sbjct: 369 AEYRKMFDR---LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 234 IIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLK--------- 284
           I     +  LK+  +    +          R ++ H N+ + FDS               
Sbjct: 426 ISIPSIYLELKVKLENEYAL---------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 285 -GFH---KTNGELKNVMRLI-QRYEF-----KNNHNEW--IESVKPAL------------ 320
            G H     + E   + R++   + F     +++   W    S+   L            
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

Query: 321 -DPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLL--KDDGIL 363
            DP     +  +L+    + EN   I ++    +   L  +D+ I 
Sbjct: 537 NDPKYERLVNAILDFLPKIEENL--ICSKYTDLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 40/271 (14%), Positives = 89/271 (32%), Gaps = 66/271 (24%)

Query: 327 EIGEM-------LEI-SETVIEN--CKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLG 376
           E GE        L +  +  ++N  CK +++  +S +S    D  I+++        +L 
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRLF 68

Query: 377 G--------------KEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY----DKCPTSV 418
                          +E+L  +Y+   F +  I +     Q ++    Y    D+     
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYK---FLMSPIKTE--QRQPSMMTRMYIEQRDRLYNDN 123

Query: 419 SFIARHGGDRF-LLDTVQNMYASLQEQADIAT-------KSKLSTNTFNQKQSAEIAKEK 470
              A++   R      ++     L+   ++         K+ ++ +      S ++  + 
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC---LSYKVQCKM 180

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             + +    WL   +  +    L       Y               + +D +  I L   
Sbjct: 181 DFKIF----WLNLKNCNSPETVLEMLQKLLYQID--------PNWTSRSDHSSNIKLRIH 228

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL 561
           +++A LRR    +    Y+  +      LVL
Sbjct: 229 SIQAELRRLLKSKP---YENCL------LVL 250

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 12/73 (16%), Positives = 25/73 (34%)

Query: 496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF 555
            +       A  +L+  +  +A A   + +  D   V  Y   G   E L    +AI+ +
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64

Query: 556 SYALVLEPTNKRA 568
           +  + +       
Sbjct: 65  AQGIEVAREEGTQ 77

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 53.0 bits (128), Expect = 5e-09
 Identities = 9/81 (11%), Positives = 25/81 (30%), Gaps = 4/81 (4%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             +  K     +A++ + E ++ + +    Y +    Y        A     + I + ++
Sbjct: 14  AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73

Query: 531 NVKAYLRRGTAREMLGYYKEA 551
                       E+     +A
Sbjct: 74  EGTQK----DLSELQDAKLKA 90

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 54.7 bits (132), Expect = 1e-09
 Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 1/90 (1%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINL 527
           +   +         A+    E ++         Y     AY + G + +A  +   AI L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSY 557
           +  +     R+     +  Y K+      +
Sbjct: 65  NPDSPALQARKMVMDILNFYNKDMYNQLEH 94

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVL 561
                 +  G    A     + +  +     +AY   G A   LG +++A+ ++  A+ L
Sbjct: 5   KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64

Query: 562 EPTNKRA 568
            P +   
Sbjct: 65  NPDSPAL 71

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 22/111 (19%), Positives = 40/111 (36%), Gaps = 10/111 (9%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSF 514
           + + S      +G +  K       +SF+  A+++   +    +  YS    AY     +
Sbjct: 4   SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 63

Query: 515 LQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIEDFSYAL 559
            +A       + L     D+    KA    G   ++LG + EAI      L
Sbjct: 64  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 114

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 25/126 (19%)

Query: 461 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN---ATYY 501
           +++  +    G++             +     +  A+  + + + +    G+       Y
Sbjct: 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 230

Query: 502 SNRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIEDF 555
           SN   AY+  G F  A     K + L     D+    ++    G    +L  Y++AI+  
Sbjct: 231 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290

Query: 556 SYALVL 561
              L +
Sbjct: 291 LKHLAI 296

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 18/105 (17%), Positives = 29/105 (27%), Gaps = 21/105 (20%)

Query: 482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE----------ADCTKAINLDKKN 531
           +         K N  +A   +      LE   F                  +A+ +D K 
Sbjct: 20  QIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK 79

Query: 532 VKAYLRRGTA-----------REMLGYYKEAIEDFSYALVLEPTN 565
            +A    G A            E    +  A + F  A+  +P N
Sbjct: 80  DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDN 124

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 12/113 (10%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESG 512
               +A +A ++  +  +     KA+  Y +A  +  N       A      +   +   
Sbjct: 110 GTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ 169

Query: 513 SFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYAL 559
            F +A A   K  ++ K+        K  + +   +     Y  A +    + 
Sbjct: 170 KFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 11/150 (7%)

Query: 440 SLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-- 497
               +A+   K+       +   +A    +        KQ  +A   Y +  + + NN  
Sbjct: 12  EHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS 71

Query: 498 ----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-----AYLRRGTAREMLGYY 548
               A  +        +     +A     KA  +  +N         L R          
Sbjct: 72  LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDL 131

Query: 549 KEAIEDFSYALVLEPTNKRASLSADRLRKV 578
            +A+  +  A  +    +R   +A+ + K 
Sbjct: 132 SKAVHLYQQAAAVFENEERLRQAAELIGKA 161

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 46.9 bits (112), Expect = 9e-06
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAIN 526
           G +  K       +SF+  A+++   +    +  YS    AY     + +A       + 
Sbjct: 12  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71

Query: 527 L-----DKKNV-KAYLRRGTAREMLGYYKEAIEDFSYAL 559
           L     D+    KA    G   ++LG + EAI      L
Sbjct: 72  LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 26/127 (20%)

Query: 461 KQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLN---GNN----ATY 500
           +   + A++ G+               +    W  A   + E  +L      +    +  
Sbjct: 50  QALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN 109

Query: 501 YSNRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIED 554
               A   L  G    A  +  K++       D+  +  A+   G   +      EA + 
Sbjct: 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQH 169

Query: 555 FSYALVL 561
           +  A  +
Sbjct: 170 WLRARDI 176

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 430 LLDTVQNMYASLQEQADIATKSKLSTNTFNQKQSAEIA----KEKGNQAYKDKQWLKAIS 485
           +L+ ++ +     E+    +   L  +    + +  +       +G      +++L AI 
Sbjct: 65  MLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIK 124

Query: 486 FYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------V 532
           F+ +A             A ++   + +Y        +     +A  + K++       +
Sbjct: 125 FFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184

Query: 533 KAYLRRGTAREMLGYYKEAIEDFSYAL 559
           + +    T    L  Y++AI  F  A 
Sbjct: 185 QCHSLFATNFLDLKQYEDAISHFQKAY 211

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 19/123 (15%), Positives = 43/123 (34%), Gaps = 13/123 (10%)

Query: 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNR 504
                  ++ + AE   +     Y  KQ   ++ +  +A ++       N      +S  
Sbjct: 131 SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190

Query: 505 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYA 558
           A  +L+   +  A +   KA ++ +         +     G  +     Y++AI  F  A
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 559 LVL 561
           + +
Sbjct: 251 IAV 253

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 18/138 (13%), Positives = 45/138 (32%), Gaps = 13/138 (9%)

Query: 435 QNMYASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN 494
              Y +     ++    +                 +G   +  K++++AI +Y EA K  
Sbjct: 72  GKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKEL 131

Query: 495 GNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKAYLRRGTA 541
                    A ++   A AY        +     +A+++ + +       +++       
Sbjct: 132 PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191

Query: 542 REMLGYYKEAIEDFSYAL 559
            +   +Y +A+     AL
Sbjct: 192 YDDFKHYDKALPHLEAAL 209

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 18/128 (14%), Positives = 37/128 (28%), Gaps = 13/128 (10%)

Query: 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-------NGNNATYYSNR 504
           K      +  + AE   +     Y  KQ   ++    +A+ +       +          
Sbjct: 129 KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188

Query: 505 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYA 558
           A  Y +   + +A      A+ L            + L    + +  G  + A+E F  A
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 559 LVLEPTNK 566
             +     
Sbjct: 249 AKVSREKV 256

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 18/125 (14%), Positives = 37/125 (29%), Gaps = 23/125 (18%)

Query: 460 QKQSAEIAKEKGNQ------------AYKDK-QWLKAISFYTEAIKLNGNN----ATYYS 502
              +++                       +       ++F+  AI+    +    +  YS
Sbjct: 31  HDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYS 90

Query: 503 NRAAAYLESGSFLQAEADCTKAINL-----DKKNV-KAYLRRGTAREMLGYYKEAIEDFS 556
               AY   G + +A       + L     D+    K+    G   +++G + EA     
Sbjct: 91  QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCE 150

Query: 557 YALVL 561
             L L
Sbjct: 151 RHLTL 155

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 14/124 (11%)

Query: 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNR 504
                  +  Q+  I     N   ++    K I  + + +K           +     N 
Sbjct: 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202

Query: 505 AAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIED-FSY 557
           A A      + ++     KAI +  +        + Y +RG     L Y +  IED +  
Sbjct: 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262

Query: 558 ALVL 561
           A   
Sbjct: 263 ASFF 266

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 21/159 (13%), Positives = 47/159 (29%), Gaps = 20/159 (12%)

Query: 440 SLQEQADIATKSKLS-------TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK 492
            L ++A+               ++++  +++A++  +        K+   A   + +A  
Sbjct: 6   ELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAAD 65

Query: 493 LNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYLRRGT 540
                         Y      +   G+ + A      AI +                 G 
Sbjct: 66  YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125

Query: 541 AREM-LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578
             E  L  Y +AI+ +  A      ++  +LS     K 
Sbjct: 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	580
2dc0_A	434	Probable amidase; structural genomics, NPPSFA, nat	100.0
3ip4_A	485	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
3h0l_A	478	Glutamyl-tRNA(Gln) amidotransferase subunit A; mul	100.0
3kfu_E	471	Glutamyl-tRNA(Gln) amidotransferase subunit A; ASP	100.0
3a2q_A	493	6-aminohexanoate-cyclic-dimer hydrolase; alpha/bet	100.0
1o9p_A	414	Malonamidase E2; malonate; 1.8A {Bradyrhizobium ja	100.0
2gi3_A	476	Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1	100.0
1m22_A	503	Peptide amidase, PAM; eleven-stranded beta sheet,	100.0
3a1k_A	521	Amidase; AS family enzyme, hydrolase; 2.17A {Rhodo	100.0
3ppm_A	573	Fatty-acid amide hydrolase 1; protein-inhibitor co	100.0
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.85
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.77
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.76
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.75
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.75
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.73
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.72
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.71
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.7
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.7
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.67
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.64
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.64
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.64
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.63
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.63
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.63
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.63
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.63
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.62
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.61
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.61
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.6
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.6
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.6
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.6
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.6
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.58
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.58
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.58
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.57
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.55
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.55
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.55
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.54
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.54
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.54
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.53
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.52
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.51
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.5
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.49
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.48
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.47
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.46
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.46
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.46
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.45
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.45
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.43
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.43
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.43
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.41
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.41
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.4
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.4
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.4
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.4
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.4
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.39
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.38
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.38
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.37
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.37
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.37
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.37
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.37
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.36
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.36
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.36
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.36
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.35
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.35
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.34
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.34
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.34
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.34
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.33
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.33
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.33
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.32
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.31
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.31
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.31
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.31
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.3
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.29
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.28
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.26
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.26
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.26
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.26
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.25
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.25
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.25
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.24
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.24
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.23
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.22
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.21
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.19
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.19
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.18
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.17
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.17
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.17
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.16
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.15
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.14
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.13
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.13
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.13
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.13
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.12
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.12
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.12
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.11
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.11
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.11
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.1
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.1
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.09
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.09
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.09
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.08
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.08
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.07
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.07
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.06
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.06
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.06
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.03
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.02
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.02
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.01
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.01
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.0
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.0
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.0
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.99
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.99
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.99
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.98
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.97
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.97
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.94
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.94
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.93
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.93
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.93
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.93
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.91
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.91
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.9
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.9
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.89
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.89
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.89
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.88
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.88
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.87
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.86
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.86
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.84
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.84
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.8
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.78
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.77
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.76
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.76
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.74
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.72
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.69
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.68
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.67
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.66
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.64
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.6
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.57
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.54
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.53
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.52
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.5
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.49
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.48
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.47
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.44
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.43
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.38
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.32
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.22
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.18
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.18
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.1
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.08
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.04
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.93
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.89
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.88
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.86
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.83
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.82
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.74
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.73
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.55
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.45
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.42
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.36
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.28
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.14
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.9
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	96.44
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.34
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.32
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.87
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.44
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.19
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.08
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.02
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.96
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.83
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.42
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.36
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.34
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.18
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.81
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.72
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	90.69
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.41
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	90.2
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.0
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	88.5
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	88.19
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	86.66
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.5

>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=4.5e-88  Score=698.85  Aligned_cols=405  Identities=26%  Similarity=0.331  Sum_probs=339.7

Q ss_pred             HhhhhhhHHH-----HHHHH----h--hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCC
Q 008025           12 LGLGLAGILL-----MTKKL----K--KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEG   73 (580)
Q Consensus        12 ~~~~l~~~~~-----~~~~~----~--~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~g   73 (580)
                      ++.+|+++++     +.|++    +  +++|| +|||++..+++++++|+       +++..|||+||||+|||+|+++|
T Consensus         2 ~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~~~g~~~gpL~GvPi~vKD~~~v~G   80 (434)
T 2dc0_A            2 DLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEELRRGQVRGPLHGLPLTVKDLFPVKG   80 (434)
T ss_dssp             CHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTSCBTT
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHHhcCCCCCCcCCeeEEEEeccccCC
Confidence            4667777744     44432    3  37899 99999998776555442       35668999999999999999999


Q ss_pred             cccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhc
Q 008025           74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA  153 (580)
Q Consensus        74 ~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaa  153 (580)
                      ++||+||+.| .  .++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||+.|+||||||||||+||+
T Consensus        81 ~~tt~Gs~~~-~--~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAa  157 (434)
T 2dc0_A           81 MPTRAGTKAP-L--PPLPEEARAVRRLREAGALLFAKTNMHEIALGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVAL  157 (434)
T ss_dssp             BCCCTTCSSC-C--CCCCSSCHHHHHHHHTTCEEEEEECCSGGGCCSSCCCTTTCCCBCSSCTTBBCCSSSHHHHHHHHH
T ss_pred             cccCCCCccc-C--CCCCCCHHHHHHHHHCCCEEEEEeChhHHhcCCCCCCCCCCCCCCCCCCCCCCcccHHHHHHHHHc
Confidence            9999999998 3  333899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCcccC--CCCc
Q 008025          154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQ--RSPR  231 (580)
Q Consensus       154 g~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~~--~~~~  231 (580)
                      |++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+. ..+.  .++.
T Consensus       158 g~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv~D~a~~l~~l~g~-~~d~~~~~~l  236 (434)
T 2dc0_A          158 GIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSVRDAHFLTEILAGE-SIPLEGVQNP  236 (434)
T ss_dssp             TSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSHHHHHHHHHHHHTS-CCCCCCCCSC
T ss_pred             CCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCHHHHHHHHHHHhCC-CCCcccccCC
Confidence            999999999999999999999999999999999999999999999999999999999999999998876 3332  3456


Q ss_pred             eEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhhhh
Q 008025          232 QIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNH  309 (580)
Q Consensus       232 ~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (580)
                      ||++..+.+  ....++++.++++++++.|+  |++|++ +++        | +..       ....+..+...|.+..+
T Consensus       237 rig~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p-~~~-------~~~~~~~~~~~e~~~~~  297 (434)
T 2dc0_A          237 VFGVPLDFL--EGRLGVEVRKAFTRLLEDLPALRAEVRE-VSL--------P-LEG-------VYEVYTRLVRYEAARIH  297 (434)
T ss_dssp             EEEECHHHH--TTCSCHHHHHHHHHHHHHTTTTTCEEEE-CCC--------C-CTT-------HHHHHHHHHHHHHHHHS
T ss_pred             EEEEECccc--cCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------C-cHH-------HHHHHHHHHHHHHHHHH
Confidence            777765543  22358899999999999986  666532 222        2 221       12223334455666667


Q ss_pred             HHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCc----hHHH
Q 008025          310 NEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEML----SEDY  385 (580)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~----~~~~  385 (580)
                      ..++......+++.++.++..+..++..+|.++++.|..+++.+.++|+++|+||+||++.++|+++.....    ....
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~  377 (434)
T 2dc0_A          298 EKALKEHPEGFSPQVREALLAGLALTEKDYRDAVAEREALRLELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGH  377 (434)
T ss_dssp             HHHHHHCGGGSCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEH
T ss_pred             HHHHHhchhhcCHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhh
Confidence            777777677899999999999999999999999999999999999999999999999999999999865311    0111


Q ss_pred             HHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHH
Q 008025          386 QNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (580)
Q Consensus       386 ~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~  440 (580)
                      ...+..||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+|+.
T Consensus       378 ~~~~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~lE~~  432 (434)
T 2dc0_A          378 REAFITLTLPFSLLGVPTLALPFAKVEGMPVGLQVVGAYGEDGKVLALGGWLEAR  432 (434)
T ss_dssp             HHHHHTTTHHHHHTTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             hhhhhhhhhhhhhhCCCeEEEecCCCCCCCeEEEEECCCCchHHHHHHHHHHHHh
Confidence            2234569999999999999999998889999999999999999999999988753

>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A

Probab=100.00  E-value=2.4e-87  Score=703.90  Aligned_cols=412  Identities=22%  Similarity=0.272  Sum_probs=332.8

Q ss_pred             hHHHHhhhhhhHHHH-----HHHH----hh--hccCCccceeeccccCCCCCC--------CCCCCCCCCCCceeeeecc
Q 008025            8 LWVLLGLGLAGILLM-----TKKL----KK--NIKQDFGAFIEKLQLLPPPQP--------LPPKAPHPLTGLSFAVSDL   68 (580)
Q Consensus         8 ~~~~~~~~l~~~~~~-----~~~~----~~--~~~~~~~a~~~~~~~~~~~~~--------~~~~~~gpl~Gvp~~vKD~   68 (580)
                      +..+|+++|+++++.     .|++    +|  ++||.+|||++..+++++++|        +.++. ||||||||+|||+
T Consensus         3 l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~~~g~~-gpL~GvPi~vKD~   81 (485)
T 3ip4_A            3 IRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMD-GKLFGIPMGIKDN   81 (485)
T ss_dssp             GGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCC-STTTTCEEEEETT
T ss_pred             cccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHHhcCCC-CCcCCCEEEEEcC
Confidence            556788999988554     4443    33  789999999999887655443        34556 9999999999999


Q ss_pred             cccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhH
Q 008025           69 FDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAA  148 (580)
Q Consensus        69 ~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsa  148 (580)
                      |+++|++||+||+.+.+  +++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+|||||||||
T Consensus        82 ~~v~G~~tt~Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~t~n~~~G~t~NP~~~~~~pGGSSgGsA  159 (485)
T 3ip4_A           82 IITNGLETTCASKMLEG--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSA  159 (485)
T ss_dssp             BCBTTBCCCTTSGGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHH
T ss_pred             cccCCCccCCCChhhcC--CCCCCCcHHHHHHHHCCCEEEEecCCcccccCCCCCCCCCCCcCCccccCcCCCCCccHHH
Confidence            99999999999999987  7899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc--
Q 008025          149 VAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA--  226 (580)
Q Consensus       149 aaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~--  226 (580)
                      ||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|++.++|++|||+|+++|++.+++++.+.+..+  
T Consensus       160 aaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D~a~~l~vl~g~d~~d~~  239 (485)
T 3ip4_A          160 AAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDST  239 (485)
T ss_dssp             HHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTT
T ss_pred             HHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCHHHHHHHHHHhcCCCccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999988654221  


Q ss_pred             ---------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhh
Q 008025          227 ---------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKT  289 (580)
Q Consensus       227 ---------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~  289 (580)
                                     ..++.||++..+.+.  ...++++.++++++++.|+  |++|++ +++        |.+...   
T Consensus       240 ~~~~~~~~~~~~~~~~~~~lrigv~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~---  305 (485)
T 3ip4_A          240 SAPVDDVDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGAVVEE-VSL--------PNTKFG---  305 (485)
T ss_dssp             SCCCCCCCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH---
T ss_pred             ccccCccchhhhhccCccCcEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHH---
Confidence                           124567777655432  2357899999999999986  777643 222        222111   


Q ss_pred             hhhHHHHHHHHHHHHHhhhh-------------------HHHHHhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHHH
Q 008025          290 NGELKNVMRLIQRYEFKNNH-------------------NEWIESVKPALDPDISAEIGEMLE-----ISETVIENCKSI  345 (580)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~g~~-----~s~~~~~~a~~~  345 (580)
                          ...+..+...|+..++                   +.+.......+++.++.++..+..     ....+|.++++.
T Consensus       306 ----~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~  381 (485)
T 3ip4_A          306 ----IPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKV  381 (485)
T ss_dssp             ----HHHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHH
Confidence                1122222222322211                   111222234577888888776642     222458899999


Q ss_pred             HHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccC
Q 008025          346 RNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHG  425 (580)
Q Consensus       346 r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~  425 (580)
                      |..+++.+.++|+++|+||+||+|.+||+++....+..... ....||.++|++|+|+++||++..+|+|+|+|++++++
T Consensus       382 r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlqlvg~~~  460 (485)
T 3ip4_A          382 RTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPF  460 (485)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHh-hhhhhhhhhHhhCCCeEEEeCCcCCCCCEeEEEEcCCC
Confidence            99999999999999999999999999999987543322211 12238999999999999999999899999999999999


Q ss_pred             CChHHHHHHHHHHHHH
Q 008025          426 GDRFLLDTVQNMYASL  441 (580)
Q Consensus       426 ~d~~ll~la~~le~~l  441 (580)
                      +|..+++++..+|+..
T Consensus       461 ~d~~lL~~A~~lE~~~  476 (485)
T 3ip4_A          461 DEKTLYRVAYQYETQY  476 (485)
T ss_dssp             CHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHhc
Confidence            9999999999998754

>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*

Probab=100.00  E-value=1.5e-86  Score=693.94  Aligned_cols=412  Identities=24%  Similarity=0.320  Sum_probs=332.7

Q ss_pred             HHHHhhhhhhHHH-----HHHHH----hh--hccCCccceeeccccCCCCCCCCCCC-CCCCCCceeeeecccccCCccc
Q 008025            9 WVLLGLGLAGILL-----MTKKL----KK--NIKQDFGAFIEKLQLLPPPQPLPPKA-PHPLTGLSFAVSDLFDIEGYVT   76 (580)
Q Consensus         9 ~~~~~~~l~~~~~-----~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~~-~gpl~Gvp~~vKD~~~~~g~~t   76 (580)
                      ..+++++|+++++     +.|++    +|  ++||.+|||++..+++++++|+.... .||||||||+|||+|+++|++|
T Consensus         3 ~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~gpL~GvPi~vKD~~~~~G~~t   82 (478)
T 3h0l_A            3 WKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKERELPLFGIPIAVKDNILVEGEKT   82 (478)
T ss_dssp             TTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCTTSTTTTCEEEEETTBCCTTSBC
T ss_pred             CcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchhcCCcCCceEEEEcCccCCCCCc
Confidence            4467888888854     44443    33  78999999999988766555433222 7999999999999999999999


Q ss_pred             CCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCC
Q 008025           77 GFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLV  156 (580)
Q Consensus        77 t~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~  156 (580)
                      |+||+.+.+  +++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+||||||||||+||+|++
T Consensus        83 t~Gs~~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~  160 (478)
T 3h0l_A           83 TCASKILEN--FVAPYDATVIERLKKAGALIVGKTNLDEFAMGSSTEYSAFFPTKNPWDLERVPGGSSGGSAASVAVLSA  160 (478)
T ss_dssp             CTTCGGGTT--CBCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCCTTCTTBCCCSSSHHHHHHHHHTSS
T ss_pred             CCcCHhhcC--CCCCCCHHHHHHHHHCCCEEEEEeCchhhhcCCCCCCCCCCCcCCCccCCCCCCcchHHHHHHHHCCCC
Confidence            999999987  789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc----------
Q 008025          157 DFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA----------  226 (580)
Q Consensus       157 ~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~----------  226 (580)
                      |+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+          
T Consensus       161 ~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~l~vl~g~d~~d~~~~~~p~~~  240 (478)
T 3h0l_A          161 PVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRTEDVALVLEVISGWDEKDSTSAKVPVPE  240 (478)
T ss_dssp             SCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCCTTCTTSCCCCCCC
T ss_pred             ceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCHHHHHHHHHHhcCCCcccccccccCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999988654221          


Q ss_pred             -------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHH
Q 008025          227 -------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVM  297 (580)
Q Consensus       227 -------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~  297 (580)
                             ..++.||++..+.+.  ...++++.++++++++.|+  |++|++ +++        |.+...       ...+
T Consensus       241 ~~~~~~~~~~~lrIgv~~~~~~--~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~--------p~~~~~-------~~~~  302 (478)
T 3h0l_A          241 WSEEVKKEVKGLKIGLPKEFFE--YELQPQVKEAFENFIKELEKEGFEIKE-VSL--------PHVKYS-------IPTY  302 (478)
T ss_dssp             HHHHTTCCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH-------HHHH
T ss_pred             hhhhhccCCCCCEEEEECCccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CcHHHH-------HHHH
Confidence                   134567777665432  2358899999999999986  777643 222        222211       1122


Q ss_pred             HHHHHHHHhhhh-------------------HHHHHhhCCCCCHHHHHHHHHhhc-----CCHHHHHHHHHHHHHHHHHH
Q 008025          298 RLIQRYEFKNNH-------------------NEWIESVKPALDPDISAEIGEMLE-----ISETVIENCKSIRNEMRSAI  353 (580)
Q Consensus       298 ~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~g~~-----~s~~~~~~a~~~r~~~~~~~  353 (580)
                      ..+...|+..++                   ..+.......+++.++.++..+..     +...+|.++++.|..+++.+
T Consensus       303 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~  382 (478)
T 3h0l_A          303 YIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYARTRDEGFGPEVKRRIMLGTFALSAGYYDAYYLKAQKVRRLITNDF  382 (478)
T ss_dssp             HHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHHHHHHSCHHHHHHHHHHHHHTSTTTTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHhhhhhcCHHHHHHHHhhchhccchhhHHHHHHHHHHHHHHHHHH
Confidence            222223332221                   111122234578888888877652     22346889999999999999


Q ss_pred             HhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHH
Q 008025          354 SSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDT  433 (580)
Q Consensus       354 ~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~l  433 (580)
                      .++|+++|+||+||+|.+||+++....+..... ....||.++|++|+|+++||++..+|+|+|+|+++++++|..++++
T Consensus       383 ~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~  461 (478)
T 3h0l_A          383 LKAFEEVDVIASPTTPTLPFKFGERLENPIEMY-LSDILTVPANLAGLPAISIPIAWKDGLPVGGQLIGKHWDETTLLQI  461 (478)
T ss_dssp             HHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEEECTTCHHHHHHH
T ss_pred             HHHHhcCCEEEcCCCCCCCCCcccccCChHhhh-hhhhhhhhhHhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHH
Confidence            999999999999999999999987643322211 1224899999999999999999988999999999999999999999


Q ss_pred             HHHHHHHH
Q 008025          434 VQNMYASL  441 (580)
Q Consensus       434 a~~le~~l  441 (580)
                      +..+|+..
T Consensus       462 A~~lE~~~  469 (478)
T 3h0l_A          462 SYLWEQKF  469 (478)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhc
Confidence            99998754

>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=100.00  E-value=2.5e-86  Score=690.15  Aligned_cols=405  Identities=24%  Similarity=0.341  Sum_probs=329.8

Q ss_pred             hhhhhhHH-----HHHHHH----hh--hccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCCh
Q 008025           13 GLGLAGIL-----LMTKKL----KK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP   81 (580)
Q Consensus        13 ~~~l~~~~-----~~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~   81 (580)
                      +++|++++     ++.|++    +|  ++||.+|||++.. +.++++|+......|||||||+|||+|+++|++||+||+
T Consensus         3 a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~pL~GvPi~vKD~~~~~G~~tt~Gs~   81 (471)
T 3kfu_E            3 AHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSR   81 (471)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSCTTTTCEEEEETTBCCTTSCCCTTCS
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccCCcCCCeEEEECCcccCCccccccCH
Confidence            56677764     444543    33  7899999999999 887776655444459999999999999999999999999


Q ss_pred             hhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccc
Q 008025           82 EWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLG  161 (580)
Q Consensus        82 ~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~g  161 (580)
                      .+.+  +++.+|+++|+|||++|||++||||||||+++.+|+|.+||+|+||||++|+||||||||||+||+|++|+|+|
T Consensus        82 ~~~~--~~~~~da~~V~rL~~aGaii~GKTn~~E~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~~~a~G  159 (471)
T 3kfu_E           82 LLEN--FVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALG  159 (471)
T ss_dssp             TTTT--CCCSSCCHHHHHHHTTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEEE
T ss_pred             hHcC--CCCCCChHHHHHHHHCCCEEEeecCcCchhcCCCCCCCCCCCcCCCCccCcCCCCCcHHHHHHHHCCCCccccc
Confidence            9987  78999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc---------------
Q 008025          162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---------------  226 (580)
Q Consensus       162 tD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~---------------  226 (580)
                      ||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+               
T Consensus       160 tDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv~D~a~~~~~l~g~d~~d~~~~~~~~~~~~~~~  239 (471)
T 3kfu_E          160 SDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALE  239 (471)
T ss_dssp             EESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHCSCCTTCTTCCCCCCCTTCCSC
T ss_pred             cCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCHHHHHHHHHHhcCCCcccccccCCCcchhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999987654221               


Q ss_pred             -CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHH
Q 008025          227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY  303 (580)
Q Consensus       227 -~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  303 (580)
                       ..++.||++..+.+   ...++++.++++++++.|+  |++|++ ++        .|.+...       ...+..+...
T Consensus       240 ~~~~~lrIgv~~~~~---~~~~p~v~~a~~~a~~~L~~~G~~v~~-v~--------~p~~~~~-------~~~~~~~~~~  300 (471)
T 3kfu_E          240 GPLPPLRLGVVREAL---AGNSPGVERALEEALKVFRELGLSVRE-VS--------WPSLPQA-------LAAYYILAPA  300 (471)
T ss_dssp             CCCSSCEEEEEGGGT---TTCCHHHHHHHHHHHHHHHTTTCEEEE-EC--------CTTGGGH-------HHHHHHHHHH
T ss_pred             cCCCCCEEEEECCcc---CCCCHHHHHHHHHHHHHHHHcCCeeee-ec--------CccHHHH-------HHHHHHHHHH
Confidence             12345677665543   3358899999999999986  776643 22        2322211       1122222222


Q ss_pred             HHhh-----------------hhHHHHHhhCCCCCHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 008025          304 EFKN-----------------NHNEWIESVKPALDPDISAEIGEMLEI-----SETVIENCKSIRNEMRSAISSLLKDDG  361 (580)
Q Consensus       304 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~g~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~D  361 (580)
                      |+..                 .+..++......+++.++.++..+..+     +..+|.++++.|..+++.+.++|+++|
T Consensus       301 e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D  380 (471)
T 3kfu_E          301 EASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVD  380 (471)
T ss_dssp             HHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHTTSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHHHHHHHTTTCS
T ss_pred             HHHHHHHHhhhhccccccchhhHHHHHHhhhhhcCHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            3222                 122233332334899999988776533     335899999999999999999999999


Q ss_pred             EEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHHH
Q 008025          362 ILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (580)
Q Consensus       362 vll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~l  441 (580)
                      +||+||++.+||+++....+...+..  ..||.++|++|+|+++||+++.+|+|+|+|+++++++|..+++++..+|+..
T Consensus       381 vll~Pt~~~~a~~~~~~~~~~~~~~~--~~~t~~~nl~G~PaisvP~g~~~GlPvGlQlvg~~~~D~~LL~~A~~lE~~~  458 (471)
T 3kfu_E          381 LLLLPTTPHPAFPFGARRDPLAMYRE--DLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEAT  458 (471)
T ss_dssp             EEEEESCSSSCCBTTTTCSHHHHHGG--GTTTHHHHHHCCCEEEEEEEEETTEEEEEEEECSTTCHHHHHHHHHHHHHHS
T ss_pred             EEEeCCcCCCCCccccccchHHHHHH--hhhhhcchhhCCCeEEEeCCCCCCCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999875332222221  2389999999999999999998899999999999999999999999998654

>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A

Probab=100.00  E-value=4.2e-86  Score=696.71  Aligned_cols=415  Identities=18%  Similarity=0.234  Sum_probs=340.0

Q ss_pred             hhHHHHhhhhhhHHHHHH-----HH----hh--hccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeeccc-ccCCc
Q 008025            7 NLWVLLGLGLAGILLMTK-----KL----KK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLF-DIEGY   74 (580)
Q Consensus         7 ~~~~~~~~~l~~~~~~~~-----~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~-~~~g~   74 (580)
                      ++.. ++.+|+++++.+|     ++    +|  ++||.+|||++..+++++++++. . .||||||||+|||+| +++|+
T Consensus         5 ~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d-~gpL~GvPi~vKD~~~~v~G~   81 (493)
T 3a2q_A            5 DLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A-SGPFAGVPYLLKDLTVVSQGD   81 (493)
T ss_dssp             CTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C-CSTTTTCEEEEESSSSCCTTS
T ss_pred             hhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c-CCCcCCcEEEEecCCcCcCCC
Confidence            4555 8889999865554     32    33  78999999999888766665544 3 699999999999999 99999


Q ss_pred             ccCCCChhhh--hcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHh
Q 008025           75 VTGFGHPEWA--RTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVA  152 (580)
Q Consensus        75 ~tt~Gs~~~~--~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVa  152 (580)
                      +||+||+.|.  +  +++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+|||||||||||||
T Consensus        82 ~Tt~Gs~~~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAAAVA  159 (493)
T 3a2q_A           82 INTSSIKGMKESG--YRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQVTTEPEAWGATRNPWNLGRSVGGSSGGSGAAVA  159 (493)
T ss_dssp             BCCTTCHHHHHHT--CBCSSCCHHHHHHHHHTCEEEEEECCSGGGCSSSCCCTTTCCCCBTTBTTBCCCSSSHHHHHHHH
T ss_pred             cccccChhhhhcC--CCCCCCHHHHHHHHHCCCceEEEcChhhhhcCCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHH
Confidence            9999999998  6  78999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccccCCCCcccccccccCccccccCCCccccCCC--c-ccCCCCCcccccccCHHHHHHHHHHhcCCCccc---
Q 008025          153 ADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGI--I-PISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---  226 (580)
Q Consensus       153 ag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~--~-p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~---  226 (580)
                      +|++|+|+|||||||||+||+||||||||||+||||+.|+  + |++.++|++|||+|+++|++.+++++.+.+..+   
T Consensus       160 aG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~  239 (493)
T 3a2q_A          160 AALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSVRDIAALLDVVSGHRPGDTFC  239 (493)
T ss_dssp             TTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSHHHHHHHHHHHBSCCTTCSCC
T ss_pred             cCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCHHHHHHHHHHHcCCCCCCccc
Confidence            9999999999999999999999999999999999999998  5 888899999999999999999999988653211   


Q ss_pred             --------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhh
Q 008025          227 --------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN  290 (580)
Q Consensus       227 --------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~  290 (580)
                                    ..++.||++..+.+......++++.++++++++.|+  |++|++ +++        |.+..     
T Consensus       240 ~~~p~~~~~~~~~~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------~~~~~-----  305 (493)
T 3a2q_A          240 APTASRPYAQGISENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDVND-AYP--------EALGD-----  305 (493)
T ss_dssp             CCCCSSCHHHHTTSCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEEEE-CCC--------GGGGC-----
T ss_pred             ccCCCcchhhhcccCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CccCH-----
Confidence                          123456776655431012347899999999999986  777643 222        11110     


Q ss_pred             hhHHHHHHHHHHHHHhh---hhHHHHH--hhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhc-CCCCEEE
Q 008025          291 GELKNVMRLIQRYEFKN---NHNEWIE--SVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLL-KDDGILV  364 (580)
Q Consensus       291 ~~~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~-~~~Dvll  364 (580)
                      ..+...+..+...+.+.   .+..++.  .....+++.++.+++.+..++..+|.++++.|..+++.+.++| +++|+||
T Consensus       306 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~~D~ll  385 (493)
T 3a2q_A          306 RSFLKDYSTICDVAIAREIERNGELIGRPLTEDDVEWTSWEMVKRADQVTGRAFAACVDELRYYAGKVERWWEAGWDLLI  385 (493)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTTTSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccChhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence            00112222333334443   2333342  2345789999999999999999999999999999999999999 9999999


Q ss_pred             EcCCCCCCCCCCCCCCc------------hHHHHHHHhhhhhcccccCCceeeeeCcCC-CCCCcccceecccCCChHHH
Q 008025          365 TPTTAYPPPKLGGKEML------------SEDYQNRAFSLLSIASVSGCCQVTVPLGYY-DKCPTSVSFIARHGGDRFLL  431 (580)
Q Consensus       365 ~Pt~~~~ap~~~~~~~~------------~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-~~lp~g~q~~~~~~~d~~ll  431 (580)
                      +||++.+||+++.....            .+. ...+..||.++|++|+|+++||++.. +|+|+|+|+++++++|..++
T Consensus       386 ~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL  464 (493)
T 3a2q_A          386 LPTVTRQTPEIGELMLAKGTDLEGRQSAFISG-SLQMLAFTVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLL  464 (493)
T ss_dssp             EESCSSCCCBTTTTCCCTTCCCCSSCGGGSHH-HHHHHTTTTHHHHHCCCEEEEEEEECTTSCEEEEEEEESTTCHHHHH
T ss_pred             cCCCCCCCCCCcccccccccccccccchhhhh-hhhhhcccccccccCCCceeccCCcCCCCCCeEEEEecCCCChHHHH
Confidence            99999999999865321            111 22345699999999999999999974 89999999999999999999


Q ss_pred             HHHHHHHHHH
Q 008025          432 DTVQNMYASL  441 (580)
Q Consensus       432 ~la~~le~~l  441 (580)
                      +++..+|+..
T Consensus       465 ~~A~~lE~~~  474 (493)
T 3a2q_A          465 QVAAQLEGAL  474 (493)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhc
Confidence            9999998754

>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A

Probab=100.00  E-value=3.8e-85  Score=672.02  Aligned_cols=393  Identities=22%  Similarity=0.275  Sum_probs=332.5

Q ss_pred             HhhhhhhHHHHH-----HHH----hh--hccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCC
Q 008025           12 LGLGLAGILLMT-----KKL----KK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGH   80 (580)
Q Consensus        12 ~~~~l~~~~~~~-----~~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs   80 (580)
                      ++.+|+++++.+     |++    +|  +.||.+|||++..++++ +     ...||||||||+|||+|+++|++||+||
T Consensus         3 ~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~-----~~~gpL~GvPi~vKD~~~v~G~~tt~Gs   76 (414)
T 1o9p_A            3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A-----QASGPLRGIAVGIKDIIDTANMPTEMGS   76 (414)
T ss_dssp             CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C-----CSSSTTTTCEEEEETTBCCSSSCCCTTS
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c-----ccCCCcCCCEEEEEcccccCCcccCcCC
Confidence            567777774444     432    33  78999999999988766 2     4579999999999999999999999999


Q ss_pred             hhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCcccc
Q 008025           81 PEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSL  160 (580)
Q Consensus        81 ~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~  160 (580)
                      +.|.+  +++.+|+++|+|||++|||++||||||||++    +|.  |+|+||||++|+|||||||||||||+|++|+|+
T Consensus        77 ~~~~~--~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~----~n~--G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~al  148 (414)
T 1o9p_A           77 EIYRG--WQPRSDAPVVMMLKRAGATIIGKTTTTAFAS----RDP--TATLNPHNTGHSPGGASSGSAAAVGAGMIPLAL  148 (414)
T ss_dssp             GGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCCGGGS----SCC--CSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEE
T ss_pred             Hhhcc--CCCCCCHHHHHHHHHCCCEEEEecCCchhhc----CCC--CCCCCCCCCCCCCCcchHHHHHHHHcCCCceEE
Confidence            99987  6888999999999999999999999999998    444  999999999999999999999999999999999


Q ss_pred             ccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCcc---cCCCCceEEEcc
Q 008025          161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFA---AQRSPRQIIIAD  237 (580)
Q Consensus       161 gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~---~~~~~~~l~i~~  237 (580)
                      |||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..   ....+.||++..
T Consensus       149 GtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv~D~a~~~~~l~g~~~~~~~~~~~~lrig~~~  228 (414)
T 1o9p_A          149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVR  228 (414)
T ss_dssp             EEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECC
T ss_pred             eeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCHHHHHHHHHHhcCCCccccccCCCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999998875421   123456777765


Q ss_pred             chhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHh
Q 008025          238 DCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES  315 (580)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (580)
                      +...  ...++++.++++++++.|+  |++|++ ++        .|....   .   +...+..+...+.+..+..++..
T Consensus       229 ~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~--------~~~~~~---~---~~~~~~~~~~~e~~~~~~~~~~~  291 (414)
T 1o9p_A          229 QEFA--GAVEPAAEQGLQAAIKAAERAGASVQA-ID--------LPEAVH---E---AWRIHPIIQDFEAHRALAWEFSE  291 (414)
T ss_dssp             CGGG--CCCCHHHHHHHHHHHHHHHHTTCEEEE-CC--------CCHHHH---H---HHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             cccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-ec--------CcchHH---H---HHHHHHHHHHHHHHHHHHHHHHh
Confidence            5432  3358899999999999986  666532 21        221110   0   22233445556777777788877


Q ss_pred             hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhc
Q 008025          316 VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI  395 (580)
Q Consensus       316 ~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~  395 (580)
                      ....+++.++.++..+..++..+|.++++.|+.+++.+.++|+++|+||+||++.++|+++.....       ...||.+
T Consensus       292 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~-------~~~~t~~  364 (414)
T 1o9p_A          292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTG-------DPRYNRL  364 (414)
T ss_dssp             SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCC-------CGGGTHH
T ss_pred             ChhhcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccccCCc-------ccchhhh
Confidence            777899999999999999999999999999999999999999999999999999999998643211       1258999


Q ss_pred             ccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025          396 ASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (580)
Q Consensus       396 ~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~l~  442 (580)
                      +|++|+|+++||++...|+|+|+|+++++++|..+++++..+|+.+.
T Consensus       365 ~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~a~~le~~~~  411 (414)
T 1o9p_A          365 WTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA  411 (414)
T ss_dssp             HHHHCCCEEEEEEEEETTEEEEEEEEESTTCHHHHHHHHHHHHHHHH
T ss_pred             hHhcCCCeEEeeCCCCCCCCeEEEEECCCCChHHHHHHHHHHHHHhc
Confidence            99999999999999766999999999999999999999999997654

>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*

Probab=100.00  E-value=2.3e-85  Score=688.08  Aligned_cols=407  Identities=21%  Similarity=0.282  Sum_probs=326.3

Q ss_pred             hhHHHHhhhh--hhHHHHHHHH----hh--hccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCC
Q 008025            7 NLWVLLGLGL--AGILLMTKKL----KK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGF   78 (580)
Q Consensus         7 ~~~~~~~~~l--~~~~~~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~   78 (580)
                      ++..+++.+|  .+-+++.|++    +|  ++||.+|||++..+++++.+     . ||||||||+|||+|+++|++||+
T Consensus         6 ~~~~~s~~~li~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~ald~-----~-gpL~GvPi~vKD~~~v~G~~Tt~   79 (476)
T 2gi3_A            6 DFRKLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVEK-----K-GKFWGIPVAIKDNILTLGMRTTC   79 (476)
T ss_dssp             CGGGCCHHHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCCC-----C-STTTTCEEEEETTBCCSSSCCCT
T ss_pred             ccccCCHHHHHHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhhhc-----c-CCcCCceEEEEcCccCCCCccCc
Confidence            3444556665  0116666653    33  78999999999988877622     2 99999999999999999999999


Q ss_pred             CChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCcc
Q 008025           79 GHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDF  158 (580)
Q Consensus        79 Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~  158 (580)
                      ||+.+.+  +++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+||||++|+|||||||||||||+|++|+
T Consensus        80 Gs~~~~~--~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaAVAag~~~~  157 (476)
T 2gi3_A           80 ASRILEN--YESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVA  157 (476)
T ss_dssp             TCGGGTT--CCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSE
T ss_pred             cChhhcC--CCCCCChHHHHHHHHCCCEEEEecCchhhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHcCCCce
Confidence            9999987  78899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc------------
Q 008025          159 SLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA------------  226 (580)
Q Consensus       159 a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~------------  226 (580)
                      |+|||||||||+||+||||||||||+||||+.|++|++.++|++|||+|+++|++.+++++.+.+..+            
T Consensus       158 alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv~D~a~~l~~l~g~d~~d~~~~~~p~~~~~  237 (476)
T 2gi3_A          158 ALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLS  237 (476)
T ss_dssp             EEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSST
T ss_pred             EeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCHHHHHHHHHHhhCCCCCCccccCCCcchhh
Confidence            99999999999999999999999999999999999999999999999999999999999987653211            


Q ss_pred             ----CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHH
Q 008025          227 ----QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLI  300 (580)
Q Consensus       227 ----~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~  300 (580)
                          ..++.||++..+.+.  ...++++.++++++++.|+  |++|++ +++        |.+...       ...+..+
T Consensus       238 ~~~~~~~~lrig~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~-------~~~~~~~  299 (476)
T 2gi3_A          238 EIEEGVSGMKFAVPEEIYE--HDIEEGVSERFEEALKLLERLGAKVER-VKI--------PHIKYS-------VATYYVI  299 (476)
T ss_dssp             TTTSCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGH-------HHHHHHH
T ss_pred             hhhcCCCCCEEEEECcccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHH-------HHHHHHH
Confidence                123467777665431  2357899999999999986  777643 222        222111       1111122


Q ss_pred             HHHHHhhhh-----------------HHHHHh-hCCCCCHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHHHHHhhc
Q 008025          301 QRYEFKNNH-----------------NEWIES-VKPALDPDISAEIGEMLEISE-----TVIENCKSIRNEMRSAISSLL  357 (580)
Q Consensus       301 ~~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~g~~~s~-----~~~~~a~~~r~~~~~~~~~~~  357 (580)
                      ...+.+..+                 ..++.. ....+++.++.++..+..++.     .+|.++++.|..+++.++++|
T Consensus       300 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~~  379 (476)
T 2gi3_A          300 APAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVL  379 (476)
T ss_dssp             HHHHHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccccccccccccHHHHHHhhhhhhcCHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222221                 112221 234678888888887765443     378899999999999999999


Q ss_pred             CCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHH
Q 008025          358 KDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNM  437 (580)
Q Consensus       358 ~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~l  437 (580)
                      +++|+||+||++.+||+++........+.  ...||.++|++|+|+++||++..+|+|+|+|+++++++|..+++++..+
T Consensus       380 ~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~--~~~~t~~~nl~G~PaisvP~g~~~GlPvGvqlvg~~~~d~~lL~~A~~l  457 (476)
T 2gi3_A          380 SQYDAILTPTSPVTAFKIGEIKDPLTYYL--MDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAI  457 (476)
T ss_dssp             HHSSEEEEESCSSCCCBTTTCCCHHHHHT--TTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHH
T ss_pred             hcCCEEEeCCCCCCCCcccccccchhhhh--ccceeccccccCCceEEEecccCCCCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            99999999999999999987211122221  1358999999999999999999899999999999999999999999999


Q ss_pred             HHHH
Q 008025          438 YASL  441 (580)
Q Consensus       438 e~~l  441 (580)
                      |+..
T Consensus       458 E~~~  461 (476)
T 2gi3_A          458 EKNS  461 (476)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            8764

>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*

Probab=100.00  E-value=2.2e-84  Score=684.52  Aligned_cols=408  Identities=24%  Similarity=0.278  Sum_probs=327.8

Q ss_pred             ccchhHHHHhhhhhhHHHHH-----HHH----hh--hcc---CCccceeeccccCCCCCCC-------CCCCCCCCCCce
Q 008025            4 QSANLWVLLGLGLAGILLMT-----KKL----KK--NIK---QDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLS   62 (580)
Q Consensus         4 ~~~~~~~~~~~~l~~~~~~~-----~~~----~~--~~~---~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp   62 (580)
                      ..-++..+++.+|+++++.+     |++    +|  ++|   |.+|||++..++ ++++|+       .++..|||||||
T Consensus         4 ~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~-Al~~A~~~d~~~~~g~~~gpL~GvP   82 (503)
T 1m22_A            4 VPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIP   82 (503)
T ss_dssp             -CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCE
T ss_pred             CCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHH-HHHHHHHHHHHHHcCCCCCCcCCce
Confidence            34467777899999985544     432    33  778   999999998876 555442       356679999999


Q ss_pred             eeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEecccccccc-----ccCCCCCCCCCCCCCCCCC
Q 008025           63 FAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAY-----SINGTNKHYDTPTNPAAPS  137 (580)
Q Consensus        63 ~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~-----~~~~~~~~~G~~~NP~~~~  137 (580)
                      |+|||+|+++|++||+||+.|.+  +++ +|+++|+|||+||||++||||||||++     +.+|+|.+||+|+||||++
T Consensus        83 i~vKD~~~v~G~~Tt~Gs~~~~~--~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~  159 (503)
T 1m22_A           83 LLLKDNINAAPMATSAGSLALQG--FRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS  159 (503)
T ss_dssp             EEEETTBCCTTSCCCTTCGGGTT--CCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTT
T ss_pred             eEeecccccCCCCcCCCCHhhcC--CCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCC
Confidence            99999999999999999999987  688 999999999999999999999999998     7899999999999999999


Q ss_pred             CCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHH
Q 008025          138 QMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGH  217 (580)
Q Consensus       138 ~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~  217 (580)
                      |+|||||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|++.++|++|||+|+++|++.+++
T Consensus       160 ~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv~D~a~~l~  239 (503)
T 1m22_A          160 HSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLT  239 (503)
T ss_dssp             BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccc---------------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccc
Q 008025          218 VLLQLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGE  274 (580)
Q Consensus       218 ~l~~~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~  274 (580)
                      ++.+.+..+                     ..++.||++..+.+ .   .++++.++++++++.|+  |++|++ +++  
T Consensus       240 vl~g~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~lrIgv~~~~~-~---~~~~v~~a~~~a~~~L~~~G~~v~~-~~~--  312 (503)
T 1m22_A          240 AIAGRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPL-L---KYRGMPPLIEQAATELRRAGAVVVP-VEL--  312 (503)
T ss_dssp             HHCCCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGG-G---GSTTHHHHHHHHHHHHHHTTCEEEE-ECC--
T ss_pred             HHcCCCCCCccccccccccccchhhhccccCCCCCEEEEECccc-c---CCHHHHHHHHHHHHHHHHcCCEEEE-eCC--
Confidence            987643211                     12456777766543 1   46789999999999886  777753 332  


Q ss_pred             cccccCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHH---------------------hhCCCCCHHHHHHHHHhhc
Q 008025          275 YFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIE---------------------SVKPALDPDISAEIGEMLE  333 (580)
Q Consensus       275 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~g~~  333 (580)
                            |.+.++..       .+..+...++..++..|+.                     .....+++.++.++..+..
T Consensus       313 ------p~~~~~~~-------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (503)
T 1m22_A          313 ------PNQGAWAE-------AERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAG  379 (503)
T ss_dssp             ------TTTTTTHH-------HHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCC
T ss_pred             ------CcHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhhhcchhcccccCHHHHHHHHhcCC
Confidence                  21111100       0111111222222222221                     1134577888888888888


Q ss_pred             CCHHHHHHHHHHHHHHHHH--HHhhcCC--CCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCc
Q 008025          334 ISETVIENCKSIRNEMRSA--ISSLLKD--DGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLG  409 (580)
Q Consensus       334 ~s~~~~~~a~~~r~~~~~~--~~~~~~~--~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~  409 (580)
                      ++..+|.++++.|+.+++.  +.++|++  +|+||+||+ .++|+++.....   +   ...||.++|++|+|+++||++
T Consensus       380 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~~---~---~~~~t~~~nl~G~PaisvP~g  452 (503)
T 1m22_A          380 LADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGDD---F---PGESYSAAAVAGYPSLTVPMG  452 (503)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECC-CCCCBTTC---C---C---TTCCHHHHHHHTCCEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCC-ccCcccccccCc---c---cccccccchhhCCCeEEeccc
Confidence            9999999999998888876  9999984  999999999 567776532111   1   145899999999999999999


Q ss_pred             CCCCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025          410 YYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (580)
Q Consensus       410 ~~~~lp~g~q~~~~~~~d~~ll~la~~le~~l~  442 (580)
                      +.+|+|+|+|+++++++|..+++++..+|+...
T Consensus       453 ~~~GlPvGvqlvg~~~~d~~lL~~A~~~E~~~~  485 (503)
T 1m22_A          453 QIDGLPVGLLFMGTAWSEPKLIEMAYAYEQRTR  485 (503)
T ss_dssp             EETTEEEEEEEECSTTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCeEEEEECCCCChHHHHHHHHHHHHhhC
Confidence            889999999999999999999999999997653

>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A

Probab=100.00  E-value=7.8e-83  Score=672.05  Aligned_cols=376  Identities=23%  Similarity=0.299  Sum_probs=307.2

Q ss_pred             CCCCCCCCCceeeeecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCC
Q 008025           52 PKAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPT  131 (580)
Q Consensus        52 ~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~  131 (580)
                      +...|||+||||+|||+|+++|++||+||+.+.+  +++.+|+++|+|||+||||++||||||||+++.+|+|.+||+|+
T Consensus        82 g~~~gpL~GvPi~vKD~i~v~G~~Tt~Gs~~~~~--~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~~~~~~n~~~G~t~  159 (521)
T 3a1k_A           82 PTSDGVLTGRRVAIKDNVTVAGVPMMNGSRTVEG--FTPSRDATVVTRLLAAGATVAGKAVCEDLCFSGSSFTPASGPVR  159 (521)
T ss_dssp             CSSCCTTTTCEEEEETTBCCTTSCBCTTCTTTTT--BCCSSCCHHHHHHHHTTCEEEEEECCCGGGCCSSSSCCTTCCCE
T ss_pred             CCCCCCCCCCEEEEEcCcccCCcccCCCChhhcC--CCCCCchHHHHHHHHCCCEEEEeeChhhHhhCCCCCCCCCCCcC
Confidence            4557999999999999999999999999999987  68999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHH
Q 008025          132 NPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKI  211 (580)
Q Consensus       132 NP~~~~~~~GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d  211 (580)
                      ||||++|+|||||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|
T Consensus       160 NP~~~~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv~D  239 (521)
T 3a1k_A          160 NPWDRQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTVHD  239 (521)
T ss_dssp             ETTEEEEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSHHH
T ss_pred             CCCCCCCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCccc------------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCccccccc
Q 008025          212 LRHVGHVLLQLPFAA------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHEN  271 (580)
Q Consensus       212 ~~~v~~~l~~~~~~~------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~  271 (580)
                      ++.+++++.+.+..+                  ..++.||++..+.+. ....++++.++++++++.|+  |++|++ ++
T Consensus       240 ~a~~l~vlag~d~~D~~~~~~~~~~~~~~~l~~~~~~lrIgv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~Ga~v~e-v~  317 (521)
T 3a1k_A          240 AALMLSVIAGRDGNDPRQADSVEAGDYLSTLDSDVDGLRIGIVREGFG-HAVSQPEVDDAVRAAAHSLTEIGCTVEE-VN  317 (521)
T ss_dssp             HHHHHHHHCSCCSSCTTSCTTCCCCCSSTTTTSCCTTCEEEEEGGGSC-CSSSCHHHHHHHHHHHHGGGGGTCEEEE-EC
T ss_pred             HHHHHHHHhCCCCCCccccccCCCcchhhhhccCccCcEEEEECcccc-ccCCCHHHHHHHHHHHHHHHHCCCEEEE-eC
Confidence            999999988654221                  123456777655322 11247899999999999986  666643 22


Q ss_pred             ccccccccCCchhhhhhhhhhHH--HHHHHHH-------------HHHHhhhhHHHHHhhCCCCCHHHHHHHHHhh----
Q 008025          272 LGEYFDSKVPSLKGFHKTNGELK--NVMRLIQ-------------RYEFKNNHNEWIESVKPALDPDISAEIGEML----  332 (580)
Q Consensus       272 l~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~----  332 (580)
                      +        |.+......+..+.  .....+.             ..+....+..|.......+++.++.++..+.    
T Consensus       318 ~--------p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~  389 (521)
T 3a1k_A          318 I--------PWHLHAFHIWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHGIT  389 (521)
T ss_dssp             C--------THHHHHHHHHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHT
T ss_pred             C--------CchHhHHHHHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhhhhhcCHHHHHHHHhchhhhc
Confidence            2        22111100000000  0000000             0122223444555556678999999987764    


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHH---HhhhhhcccccCCceeeeeCc
Q 008025          333 EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNR---AFSLLSIASVSGCCQVTVPLG  409 (580)
Q Consensus       333 ~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~---~~~~t~~~n~~g~P~~~~P~~  409 (580)
                      .++..+|.++++.|..+++.++++|+++|+||+||+|.+||+++....+...+..+   +..||.++|++|+|+++||++
T Consensus       390 ~~~~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g  469 (521)
T 3a1k_A          390 TLGGASYGKARNLVPLARAAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAG  469 (521)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEeecc
Confidence            46778999999999999999999999999999999999999998754333333332   345799999999999999999


Q ss_pred             CCCCCCcccceecccCCChHHHHHHHHHHH
Q 008025          410 YYDKCPTSVSFIARHGGDRFLLDTVQNMYA  439 (580)
Q Consensus       410 ~~~~lp~g~q~~~~~~~d~~ll~la~~le~  439 (580)
                      ..+|+|+|+|+++++++|..+++++..+|+
T Consensus       470 ~~~GlPvGlQlvg~~~~d~~LL~~A~~~E~  499 (521)
T 3a1k_A          470 LVNGLPVGMMITGRHFDDATVLRVGRAFEK  499 (521)
T ss_dssp             EETTEEEEEEEECSTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence            989999999999999999999999999987

>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*

Probab=100.00  E-value=1.1e-80  Score=657.18  Aligned_cols=419  Identities=20%  Similarity=0.220  Sum_probs=323.5

Q ss_pred             cchhHHHHhhhhhhHHHHHH-----HH----hh--hccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCC
Q 008025            5 SANLWVLLGLGLAGILLMTK-----KL----KK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEG   73 (580)
Q Consensus         5 ~~~~~~~~~~~l~~~~~~~~-----~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g   73 (580)
                      ..+++.+|+++|+++++.+|     ++    +|  ++||.+|||++.+++. .++++.....||||||||+|||+|+++|
T Consensus        65 ~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a-~~~a~~~~~~gpL~GvPi~vKD~~~~~G  143 (573)
T 3ppm_A           65 SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDC-ETQLSQAPRQGLLYGVPVSLKECFSYKG  143 (573)
T ss_dssp             HHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTH-HHHHHHCCTTCTTTTCEEEEETTBCCBT
T ss_pred             hhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHH-HHHHHhhhhcCCcCCCeEEEEcccCCCC
Confidence            35678889999999965554     32    33  7899999999987652 2222222335999999999999999999


Q ss_pred             cccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhc
Q 008025           74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA  153 (580)
Q Consensus        74 ~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaa  153 (580)
                      ++||+||+.+.+  +++.+|+++|++|++||||++||||||||+++.+|+|++||+|+||||+.++||||||||||+||+
T Consensus       144 ~~tt~Gs~~~~~--~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAa  221 (573)
T 3ppm_A          144 HDSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMFSYDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGS  221 (573)
T ss_dssp             CCCCTTCGGGTT--CCBSSCCHHHHHHHHTTCEEEEEECCCTTSCSSSCEETTTEECCCTTCTTBCCCSSSHHHHHHHHT
T ss_pred             CCcCCcChhhcC--CCCCcchHHHHHHHHCCCEEEEecCCccccccCCCCCCCCCCcCCCCCCCCCCCCCCchHHHHHHc
Confidence            999999999987  689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCC----CCcccccccCHHHHHHHHHHhcCCC------
Q 008025          154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTS----LDTVGWFARDPKILRHVGHVLLQLP------  223 (580)
Q Consensus       154 g~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~s----ld~~G~~ar~~~d~~~v~~~l~~~~------  223 (580)
                      |++|+|+|||||||||+||+||||||||||+||+|+.|++|.+.+    +|++|||+|+++|++.+++++.+.+      
T Consensus       222 g~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv~D~a~~l~~l~~~d~~~~d~  301 (573)
T 3ppm_A          222 GGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDP  301 (573)
T ss_dssp             TSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHHCT
T ss_pred             CCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcHHHHHHHHHHHhcccccccCC
Confidence            999999999999999999999999999999999999999998765    8999999999999999999876432      


Q ss_pred             ------cc----cCCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhh-
Q 008025          224 ------FA----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTN-  290 (580)
Q Consensus       224 ------~~----~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~-  290 (580)
                            +.    ....+.||++..+..  ...+++++.++++++++.|.  ||+|++ +++        |.+.+..... 
T Consensus       302 ~~~~~~~~~~~~~~~~~lrigv~~~~~--~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~~--------p~~~~~~~~~~  370 (573)
T 3ppm_A          302 TVPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAGHTLIP-FLP--------NNIPYALEVLS  370 (573)
T ss_dssp             TSCCCCCCHHHHTCCCCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTTCEEEE-CCC--------TTHHHHHHTHH
T ss_pred             CCCccccchhhcccCCCCEEEEEcccC--CCCCCHHHHHHHHHHHHHHHHCCCEEEE-ecC--------ccHHHHHHHHH
Confidence                  11    123456777764432  23357899999999999986  887753 222        2221100000 


Q ss_pred             -----hh-HHHHHHHHHHHHH--------------hhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 008025          291 -----GE-LKNVMRLIQRYEF--------------KNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMR  350 (580)
Q Consensus       291 -----~~-~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~  350 (580)
                           .+ .......+. .+.              -..+...+......+.+.+...+..+...+..+++++...|+.++
T Consensus       371 ~~~~~~dg~~~~~~~~~-~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r~~~r  449 (573)
T 3ppm_A          371 TGGLFSDGGRSFLQNFK-GDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEIEMYR  449 (573)
T ss_dssp             HHHHTTBTTHHHHGGGT-TSCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHHHHHhc-cCcccHHHHHHhhhccchHHHHHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence                 00 000000000 000              000000001111234455556666777789999999999999999


Q ss_pred             HHHHhhcC--CCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCC-----------------
Q 008025          351 SAISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYY-----------------  411 (580)
Q Consensus       351 ~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~-----------------  411 (580)
                      +.+.++|.  ++|+||+|+ +.++++++....     ....+.||.+||++|+|+++||++..                 
T Consensus       450 ~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~-----~~~~~~YT~l~NLLDyPA~vVPvg~v~~~~d~~~~~~~~~~~~  523 (573)
T 3ppm_A          450 QSVIAQWKAMNLDVLLTPM-LGPALDLNTPGR-----ATGAVSYTMLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGD  523 (573)
T ss_dssp             HHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGG-----CGGGGHHHHHHHHTTCCEEEEEEEECCHHHHHHHTTCCCSSCS
T ss_pred             HHHHHHHhhcCCCEeeCCC-CCCCcCCccccc-----cccccchhhhhHhhCCCeEEEecccccccccccccccccccch
Confidence            99999995  599999999 558888875311     11345699999999999999999853                 


Q ss_pred             -------------CCCCcccceecccCCChHHHHHHHHHHHHHHHh
Q 008025          412 -------------DKCPTSVSFIARHGGDRFLLDTVQNMYASLQEQ  444 (580)
Q Consensus       412 -------------~~lp~g~q~~~~~~~d~~ll~la~~le~~l~~~  444 (580)
                                   .|+|+|+|+++++++|+.++.++..+++.++..
T Consensus       524 ~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~  569 (573)
T 3ppm_A          524 IWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQ  569 (573)
T ss_dssp             HHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred             hhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcc
Confidence                         599999999999999999999999999876543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.85  E-value=3.2e-20  Score=158.87  Aligned_cols=118  Identities=31%  Similarity=0.453  Sum_probs=115.2

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      .+|+.++.++++|+.++++|+|++|++.|+++++++|+++.+|+++|.+|.++|++++|+++|+++++++|++..+|+++
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      |.+|..+|++++|+++|+++++++|++..++..++.+.
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999998874

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.77  E-value=2e-17  Score=145.79  Aligned_cols=116  Identities=18%  Similarity=0.111  Sum_probs=110.9

Q ss_pred             ccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~  530 (580)
                      ..+.+....+|++...++.+|..+++.|+|++|+..|+++++++|+++.+|+++|.+|..+|+|++|+++|+++++++|+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            44556667789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                      ++.+|+++|.+|..+|++++|+++|++++++.|+.+
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999999999876

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.76  E-value=2.3e-18  Score=150.22  Aligned_cols=119  Identities=18%  Similarity=0.195  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NAT-----YYSNRAAAYLESGSFLQAEADCTKAINL-  527 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------~~~-----~~~~la~~~~~~~~~~~A~~~~~~al~l-  527 (580)
                      ...+..++++|+.+++.|+|++|+..|+++++++|+       +..     +|+++|.++.++|+|++|+.+|+++|++ 
T Consensus         8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~   87 (159)
T 2hr2_A            8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            356788999999999999999999999999999999       544     9999999999999999999999999999 


Q ss_pred             ------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          528 ------DKKNVKAY----LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       528 ------~p~~~~a~----~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                            +|++..+|    +++|.++..+|++++|+++|+++++++|++......+..+++++
T Consensus        88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~  149 (159)
T 2hr2_A           88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA  149 (159)
T ss_dssp             HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred             hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence                  99999999    99999999999999999999999999999998888888887764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.75  E-value=1e-17  Score=148.02  Aligned_cols=122  Identities=11%  Similarity=-0.002  Sum_probs=113.8

Q ss_pred             chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  536 (580)
                      ....|+....++.+|.+|++.|+|++|++.|+++++++|+++.+|+++|.+|..+|++++|+++|+++++++|+++.+++
T Consensus        24 ~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  103 (150)
T 4ga2_A           24 TPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL  103 (150)
T ss_dssp             SCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHH
Confidence            33457788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          537 RRGTAREMLGYYKEAIED-FSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       537 ~lg~~~~~~g~~~~A~~~-~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ++|.+|.++|++++|.+. ++++++++|+++.++..++++...
T Consensus       104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A          104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            999999999999887765 599999999999999998887653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.75  E-value=2.8e-17  Score=140.18  Aligned_cols=118  Identities=33%  Similarity=0.425  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      ..+..++.+|..+++.|+|++|+..|+++++++|++..+|+++|.+|.++|++++|+++|+++++++|++..+|+++|.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhhh
Q 008025          542 REMLGYYKEAIEDFSYALVLE------PTNKRASLSADRLRKVF  579 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l~~l~~~~  579 (580)
                      +..+|++++|+++|+++++++      |++..++..+..+.+.+
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999999      99999999999998775

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.73  E-value=8.6e-17  Score=137.65  Aligned_cols=115  Identities=30%  Similarity=0.414  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VK  533 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-------~~  533 (580)
                      ++.+.++.++|+.++++|+|++|+++|+++++++|++..+|+++|.+|+++|+|++|+++|+++++++|++       ..
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            56788899999999999999999999999999999999999999999999999999999999999998865       46


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      +|+++|.++..+|++++|+++|+++++..|+ ++....+..++
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~le  126 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKELE  126 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHhC
Confidence            8999999999999999999999999999884 67777776664

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.72  E-value=8.3e-17  Score=141.72  Aligned_cols=121  Identities=12%  Similarity=0.060  Sum_probs=112.4

Q ss_pred             chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  536 (580)
                      ...+|++...++.+|..+++.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+++|+++++++|+++.+++
T Consensus        14 l~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~   93 (148)
T 2vgx_A           14 NEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF   93 (148)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred             HcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence            44568889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          537 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       537 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++|.+|..+|++++|+++|+++++++|+++........+..
T Consensus        94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  134 (148)
T 2vgx_A           94 HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSS  134 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHH
Confidence            99999999999999999999999999988766555555443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.71  E-value=1.2e-16  Score=139.51  Aligned_cols=125  Identities=17%  Similarity=0.148  Sum_probs=115.0

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  533 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~  533 (580)
                      .+....+|++...++.+|..+++.|+|++|+..|+++++.+|+++.+|+++|.+|..+|++++|+++|+++++++|+++.
T Consensus         8 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~   87 (142)
T 2xcb_A            8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR   87 (142)
T ss_dssp             -CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcH
Confidence            34455678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +++++|.+|..+|++++|+++|+++++++|+++........+...
T Consensus        88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  132 (142)
T 2xcb_A           88 FPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAM  132 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            999999999999999999999999999999888766666555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.70  E-value=1.8e-16  Score=141.78  Aligned_cols=119  Identities=26%  Similarity=0.368  Sum_probs=112.3

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------------------NGNNATYYSNRAAAYLESGSFLQAEADCT  522 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~  522 (580)
                      ...+..+..+|+.+++.|+|++|+..|++++++                  +|.+..+|+++|.||+++|+|++|+.+|+
T Consensus         8 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~   87 (162)
T 3rkv_A            8 LKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSS   87 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            467889999999999999999999999999999                  77778999999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHhhh
Q 008025          523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK-RASLSADRLRKVF  579 (580)
Q Consensus       523 ~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~l~~l~~~~  579 (580)
                      ++++++|+++.+|+++|.+|..+|++++|+++|+++++++|+++ .+...+..+.+.+
T Consensus        88 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~  145 (162)
T 3rkv_A           88 EVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR  145 (162)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999 7788888887654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.70  E-value=3.2e-16  Score=140.34  Aligned_cols=119  Identities=32%  Similarity=0.412  Sum_probs=110.4

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      .++..+..++.+|..+++.|+|++|+..|+++++++|++..+|+++|.+|+.+|++++|+++|+++++++|++..+|+++
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   85 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL   85 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHh
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRAS--LSADRLRK  577 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~--~~l~~l~~  577 (580)
                      |.+|..+|++++|+++|+++++++|++..++  ..+..+++
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  126 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKR  126 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence            9999999999999999999999999998744  44444443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.67  E-value=4.6e-16  Score=171.35  Aligned_cols=134  Identities=19%  Similarity=0.114  Sum_probs=124.4

Q ss_pred             HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (580)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  525 (580)
                      ...+...+.+.++.+|+...+++++|.++.++|++++|++.|+++++++|++..+|+++|.+|.++|++++|+++|++++
T Consensus        25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl  104 (723)
T 4gyw_A           25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI  104 (723)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33444555566667789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          526 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       526 ~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      +++|++..+|+++|.+|..+|++++|+++|+++++++|++..++.+++.+...+
T Consensus       105 ~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~  158 (723)
T 4gyw_A          105 QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV  158 (723)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence            999999999999999999999999999999999999999999999999887653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.64  E-value=2.2e-15  Score=165.89  Aligned_cols=121  Identities=17%  Similarity=0.189  Sum_probs=116.1

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      ..|+++++++++|+++.++|++++|++.|+++++++|++..+|++||.+|.++|++++|+++|+++++++|+++.+|+++
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      |.+|.++|++++|+++|+++++++|++..++.+++.+...+
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~  124 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS  124 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999987653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.64  E-value=3.7e-15  Score=140.16  Aligned_cols=127  Identities=16%  Similarity=0.050  Sum_probs=91.8

Q ss_pred             hccccccchhchHHHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008025          450 KSKLSTNTFNQKQSAEIAKEKGNQAYKD-----------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE  518 (580)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----------g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  518 (580)
                      ...+......+|+....++.+|.++...           |++++|+..|+++++++|++..+++++|.+|..+|++++|+
T Consensus        59 ~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~  138 (217)
T 2pl2_A           59 LENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAE  138 (217)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHH
Confidence            3344445555666777777777777777           77777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       519 ~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +.|+++++++ +++.+++++|.+|..+|++++|++.|+++++++|+++.++..++.+..
T Consensus       139 ~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~  196 (217)
T 2pl2_A          139 ASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALL  196 (217)
T ss_dssp             HHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            7777777777 777777777777777777777777777777777777777777766643

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.64  E-value=1.2e-15  Score=155.92  Aligned_cols=133  Identities=10%  Similarity=-0.041  Sum_probs=122.2

Q ss_pred             HHhhhccccccchhchHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025          446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQ-WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (580)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  524 (580)
                      ...+...+...+..+|++..+|+.+|.++...|+ +++|+..|+++++++|++..+|+++|.++..+|++++|+++|+++
T Consensus       113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka  192 (382)
T 2h6f_A          113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI  192 (382)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3344455556667788999999999999999997 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          525 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       525 l~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      |+++|++..+|+++|.++..+|++++|+++|+++++++|++..+|..++.+...
T Consensus       193 l~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          193 LNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.63  E-value=5e-15  Score=149.14  Aligned_cols=124  Identities=27%  Similarity=0.335  Sum_probs=117.0

Q ss_pred             ccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHH
Q 008025          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEA  519 (580)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~  519 (580)
                      .....++..+..++.+|+.+++.|+|++|+..|+++++++|++               ..+|+++|.+|+++|+|++|++
T Consensus       138 ~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  217 (336)
T 1p5q_A          138 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE  217 (336)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3344567888999999999999999999999999999999998               6999999999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       520 ~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|+++++++|++..+|+++|.+|..+|++++|+++|+++++++|++..++..++.+...
T Consensus       218 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  276 (336)
T 1p5q_A          218 SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR  276 (336)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988764

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.63  E-value=7e-15  Score=136.02  Aligned_cols=130  Identities=28%  Similarity=0.319  Sum_probs=119.8

Q ss_pred             hccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCC
Q 008025          450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----------------TYYSNRAAAYLESGS  513 (580)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~  513 (580)
                      ...+.......+..+..++.+|..++..|+|++|+..|++++++.|+++                .+++++|.+|..+|+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  103 (198)
T 2fbn_A           24 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD  103 (198)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3444455556677888999999999999999999999999999999887                899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          514 FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       514 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      +++|+++|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++..++.+...+
T Consensus       104 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A          104 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999887653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.63  E-value=4.1e-15  Score=128.31  Aligned_cols=119  Identities=32%  Similarity=0.417  Sum_probs=112.2

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      ++..+..++.+|..++..|+|++|+..|+++++++|++..+++++|.+|..++++++|+++++++++++|++..+++++|
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            34667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHhh
Q 008025          540 TAREMLGYYKEAIEDFSYALVLEPT-----NKRASLSADRLRKV  578 (580)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~l~p~-----~~~~~~~l~~l~~~  578 (580)
                      .++..+|++++|+++|+++++++|+     +..+...+..+.+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~  128 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK  128 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998     78888888777654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.63  E-value=6.2e-15  Score=138.64  Aligned_cols=131  Identities=18%  Similarity=0.063  Sum_probs=121.2

Q ss_pred             HhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHH
Q 008025          447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-----------GSFL  515 (580)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-----------~~~~  515 (580)
                      ..+...+......+|++...++.+|.++.+.|++++|+..|+++++++|++..+++++|.++..+           |+++
T Consensus        22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~  101 (217)
T 2pl2_A           22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE  101 (217)
T ss_dssp             HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH
Confidence            33444445556677889999999999999999999999999999999999999999999999999           9999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          516 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       516 ~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|++.|+++++++|++..+++++|.++..+|++++|+++|+++++++ +++.++..++.+...
T Consensus       102 ~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~  163 (217)
T 2pl2_A          102 QALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLS  163 (217)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999 999999999987654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.63  E-value=1.5e-14  Score=120.46  Aligned_cols=115  Identities=32%  Similarity=0.437  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      .+..++.+|..++..|++++|+..|+++++.+|++..+++++|.++..+|++++|++.++++++++|++..+++++|.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ..+|++++|.++|+++++++|++..++..++.+.+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999998865

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.62  E-value=3.3e-15  Score=126.50  Aligned_cols=103  Identities=14%  Similarity=0.045  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      ..++.+|..+++.|++++|+..|+++++++|++..+|+.+|.++..+|++++|++.|+++++++|++..+++++|.+|..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHH
Q 008025          545 LGYYKEAIEDFSYALVLEPTNKR  567 (580)
Q Consensus       545 ~g~~~~A~~~~~~al~l~p~~~~  567 (580)
                      +|++++|++.|+++++++|++..
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999998754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.61  E-value=6.4e-15  Score=137.58  Aligned_cols=114  Identities=21%  Similarity=0.184  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSN----------------RAAAYLESGSFLQAEADCTKAIN  526 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~al~  526 (580)
                      .++.++..|..++..|+|++|+..|+++++++|+++.+++.                +|.+|..+|++++|+++|+++++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            35667888999999999999999999999999999888888                99999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          527 LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       527 l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      ++|++..+++++|.++..+|++++|+++|+++++++|+++.++..++.+.
T Consensus        83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~  132 (208)
T 3urz_A           83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY  132 (208)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888764

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.61  E-value=3.1e-14  Score=120.88  Aligned_cols=122  Identities=35%  Similarity=0.464  Sum_probs=115.8

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      ...+.....++.+|..++..|++++|+..|+++++.+|++..+++.+|.++..++++++|+++++++++++|++..+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~   85 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR   85 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      +|.++..+|++++|+++|+++++++|++..++..++.+...+
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999887653

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.60  E-value=7.8e-15  Score=154.17  Aligned_cols=126  Identities=29%  Similarity=0.413  Sum_probs=113.8

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHH
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAE  518 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~  518 (580)
                      ......++..+..++.+|+.++++|+|++|+..|+++++++|++               ..+|+++|.||+++++|++|+
T Consensus       258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  337 (457)
T 1kt0_A          258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV  337 (457)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            33444567888999999999999999999999999999999998               799999999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       519 ~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ++|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..++..++.+...+
T Consensus       338 ~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~  398 (457)
T 1kt0_A          338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKA  398 (457)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887643

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.60  E-value=1e-14  Score=124.54  Aligned_cols=120  Identities=33%  Similarity=0.474  Sum_probs=115.0

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      ..+.....++.+|..++..|+|++|+..|+++++.+|++..+++++|.+|..++++++|+++++++++++|++..+++++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   90 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK   90 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      |.++..+|++++|+++|+++++++|++..++..++.+...
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887654

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.60  E-value=2.2e-14  Score=133.94  Aligned_cols=132  Identities=17%  Similarity=0.139  Sum_probs=112.4

Q ss_pred             hHHHhhhccccccchhchHHHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008025          444 QADIATKSKLSTNTFNQKQSAEIAKE----------------KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA  507 (580)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~  507 (580)
                      .+...+...+......+|++...++.                +|.++.+.|++++|+..|+++++++|++..+++++|.+
T Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   97 (208)
T 3urz_A           18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM   97 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            33444444555556667888888888                99999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-----------------------------------cCCHHHHH
Q 008025          508 YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM-----------------------------------LGYYKEAI  552 (580)
Q Consensus       508 ~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-----------------------------------~g~~~~A~  552 (580)
                      |..+|++++|+++|+++++++|+++.+|+++|.+|+.                                   +|+|++|+
T Consensus        98 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~  177 (208)
T 3urz_A           98 QVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKAR  177 (208)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHH
Confidence            9999999999999999999999999998888877643                                   34689999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          553 EDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       553 ~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      .+|+++++++|+. .+...+.++.
T Consensus       178 ~~~~~al~l~P~~-~~~~~l~~i~  200 (208)
T 3urz_A          178 NSLQKVILRFPST-EAQKTLDKIL  200 (208)
T ss_dssp             HHHHHHTTTSCCH-HHHHHHHHHH
T ss_pred             HHHHHHHHhCCCH-HHHHHHHHHH
Confidence            9999999999974 4555566654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.7e-14  Score=125.87  Aligned_cols=120  Identities=32%  Similarity=0.402  Sum_probs=114.3

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      ..+..+..++.+|..++..|+|++|+..|+++++++|++   ..+++++|.+|..++++++|+++|+++++++|++..++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            345678899999999999999999999999999999998   89999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +++|.++..+|++++|+++|+++++++|++..++..+..+.+.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999988654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.60  E-value=1.2e-15  Score=134.51  Aligned_cols=109  Identities=18%  Similarity=0.102  Sum_probs=101.9

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008025          470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK  549 (580)
Q Consensus       470 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~  549 (580)
                      +|..+..+|++++|++.|++++..+|+++..++.+|.+|+++|+|++|+++|+++++++|+++.+|+++|.+|..+|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            68888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          550 EAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       550 ~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|+.+|+++++++|+++.++..++.+...
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~  111 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCK  111 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999987643

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.58  E-value=1.8e-14  Score=147.11  Aligned_cols=124  Identities=17%  Similarity=0.112  Sum_probs=118.2

Q ss_pred             cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHH
Q 008025          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVKA  534 (580)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~~~a  534 (580)
                      .+..+|+...++..+|.++.+.|++++|++.|+++++++|++..+|+++|.++..+|+ +++|+++|+++++++|++..+
T Consensus        89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a  168 (382)
T 2h6f_A           89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV  168 (382)
T ss_dssp             EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence            3455688999999999999999999999999999999999999999999999999997 999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          535 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       535 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      |+++|.++..+|++++|+++|+++++++|++..+|..++.+...+
T Consensus       169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~  213 (382)
T 2h6f_A          169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF  213 (382)
T ss_dssp             HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999887654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.58  E-value=1e-13  Score=126.23  Aligned_cols=131  Identities=18%  Similarity=0.109  Sum_probs=93.4

Q ss_pred             hhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      .+...+.+....+|++..+++.+|.++.+.|++++|+..+.+++...|++..++..+|.++...+++++|++.+.+++++
T Consensus        23 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~  102 (184)
T 3vtx_A           23 GAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL  102 (184)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            33344444555566777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       528 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|++..+++.+|.+|..+|++++|+++|+++++++|+++.++..++.+...
T Consensus       103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A          103 NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777666543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.58  E-value=7.4e-15  Score=127.78  Aligned_cols=104  Identities=19%  Similarity=0.118  Sum_probs=96.6

Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF----------LQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       475 ~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      -+.++|++|++.|+++++++|+++++|+++|.++.+++++          ++|+..|+++|+++|++..+|+++|.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             cC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          545 LG-----------YYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       545 ~g-----------~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|           ++++|+++|+++++++|++...+..+..+.+.
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka  137 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  137 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhC
Confidence            85           89999999999999999999999988877653

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.57  E-value=4.4e-14  Score=120.34  Aligned_cols=113  Identities=18%  Similarity=0.201  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHH
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA---TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VKAYLRRG  539 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~a~~~lg  539 (580)
                      .++.+|..++..|+|++|+..|+++++.+|++.   .+++.+|.+|+.+|++++|++.|+++++.+|++   +.+++++|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            568899999999999999999999999999988   899999999999999999999999999999999   89999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          540 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .++..+|++++|++.|+++++.+|+++.+......+..+
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l  122 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI  122 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            999999999999999999999999999988887777654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.55  E-value=1.7e-13  Score=121.94  Aligned_cols=115  Identities=37%  Similarity=0.611  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      .+.+..++.+|..++..|+|++|+..|+++++.+|++..+++++|.++..+|++++|+++++++++++|++..+++++|.
T Consensus        10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~   89 (166)
T 1a17_A           10 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   89 (166)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      ++..+|++++|+++|+++++++|++..++..++.+
T Consensus        90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999988666655

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.55  E-value=1.1e-13  Score=117.52  Aligned_cols=117  Identities=32%  Similarity=0.481  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKA  534 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a  534 (580)
                      +.+..++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..+|++++|+++++++++++|++       ..+
T Consensus         2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   81 (131)
T 1elr_A            2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (131)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence            4567899999999999999999999999999999999999999999999999999999999999999877       999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          535 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       535 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ++++|.++..+|++++|+++|++++++.| ++..+..+..+.+.+
T Consensus        82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~  125 (131)
T 1elr_A           82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL  125 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999 688888888877654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.55  E-value=6.6e-14  Score=132.30  Aligned_cols=129  Identities=25%  Similarity=0.180  Sum_probs=115.1

Q ss_pred             hhccccccchhch-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          449 TKSKLSTNTFNQK-QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       449 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      +...+.......+ .+...++.+|.+++..|+|++|+..|+++++.+|++..+++.+|.+|..+|++++|++.|++++++
T Consensus        26 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  105 (228)
T 4i17_A           26 AFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKA  105 (228)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            3333344444444 566788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHh
Q 008025          528 DKKNV-------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASLSADRLRK  577 (580)
Q Consensus       528 ~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~l~~l~~  577 (580)
                      +|++.       .+|+++|.++..+|++++|+++|+++++++|+  +..++..++.+..
T Consensus       106 ~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  164 (228)
T 4i17_A          106 VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY  164 (228)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence            99998       67999999999999999999999999999999  8999998887753

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.54  E-value=5.3e-14  Score=143.37  Aligned_cols=119  Identities=25%  Similarity=0.360  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK----------------LNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~----------------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  524 (580)
                      .+.+..++.+|+.+++.|+|++|++.|+++++                ++|.+..+|+++|.+|+++++|++|+++|+++
T Consensus       220 ~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a  299 (370)
T 1ihg_A          220 LLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA  299 (370)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            45667899999999999999999999999999                77888999999999999999999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          525 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       525 l~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ++++|++..+|+++|.+|..+|++++|+++|+++++++|++..++..++.+.+.+
T Consensus       300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~  354 (370)
T 1ihg_A          300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  354 (370)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999887653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.54  E-value=2e-13  Score=124.28  Aligned_cols=117  Identities=21%  Similarity=0.245  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      +.+..|+++|.+++++|+|++|++.|+++++++|++..+++.+|.+|.++|++++|++.++++++.+|++..++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +...+++++|.+.++++++++|++..++..++.+...
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~  119 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS  119 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.54  E-value=3.7e-13  Score=113.06  Aligned_cols=116  Identities=34%  Similarity=0.473  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      ....++.+|..++..|++++|++.|+++++.+|++..+++.+|.++...|++++|+.+++++++++|++..+++.+|.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ...|++++|+++|+++++++|++..++..++.+...
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999999988654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.53  E-value=4.9e-14  Score=133.18  Aligned_cols=127  Identities=20%  Similarity=0.222  Sum_probs=118.1

Q ss_pred             ccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-------TYYSNRAAAYLESGSFLQAEADCTKAI  525 (580)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al  525 (580)
                      +......+|.....++.+|.++...|++++|+..|+++++++|++.       .+++++|.++..+|++++|+++|++++
T Consensus        65 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  144 (228)
T 4i17_A           65 FDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT  144 (228)
T ss_dssp             HHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence            3344455678899999999999999999999999999999999998       679999999999999999999999999


Q ss_pred             HcCCC--CHHHHHHHHHHHHHcCCH---------------------------HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          526 NLDKK--NVKAYLRRGTAREMLGYY---------------------------KEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       526 ~l~p~--~~~a~~~lg~~~~~~g~~---------------------------~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      +++|+  +..+++++|.+|..+|+.                           ++|+.+|+++++++|++..+...+..++
T Consensus       145 ~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          145 DVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            99999  999999999999999998                           9999999999999999999999999998


Q ss_pred             hhh
Q 008025          577 KVF  579 (580)
Q Consensus       577 ~~~  579 (580)
                      ..+
T Consensus       225 ~~~  227 (228)
T 4i17_A          225 AMI  227 (228)
T ss_dssp             TTC
T ss_pred             Hhh
Confidence            754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.52  E-value=7e-14  Score=126.55  Aligned_cols=119  Identities=21%  Similarity=0.286  Sum_probs=110.3

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHHcCCCCHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA-YLESGSF--LQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~A~~~~~~al~l~p~~~~a~  535 (580)
                      .+|.....++.+|.+++..|++++|+..|+++++++|++..+++++|.+ |...|++  ++|++.++++++++|++..++
T Consensus        39 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  118 (177)
T 2e2e_A           39 ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITAL  118 (177)
T ss_dssp             HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHH
Confidence            3466778999999999999999999999999999999999999999999 8899999  999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +++|.++..+|++++|+++|+++++++|++......+..+.+
T Consensus       119 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~  160 (177)
T 2e2e_A          119 MLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM  160 (177)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence            999999999999999999999999999998766666655544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.51  E-value=2.1e-14  Score=144.69  Aligned_cols=124  Identities=26%  Similarity=0.343  Sum_probs=100.1

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHH
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-----------------TYYSNRAAAYLESGSFLQ  516 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~  516 (580)
                      .......+..+..++.+|+.+++.|+|++|+..|++++++.|++.                 .+|+++|.+|+++++|++
T Consensus       169 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~  248 (338)
T 2if4_A          169 DMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE  248 (338)
T ss_dssp             BCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            334445567788999999999999999999999999999999877                 489999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          517 AEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       517 A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      |+++|+++++++|++..+|+++|.+|..+|++++|+++|+++++++|++..++..+..+.+
T Consensus       249 A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          249 AIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988744

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.50  E-value=1e-13  Score=114.33  Aligned_cols=106  Identities=18%  Similarity=0.213  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLRR  538 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~l  538 (580)
                      |.....++.+|..++..|++++|+..|+++++++|++..+++++|.++..+|++++|+++++++++++|+  +..+++++
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l   82 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK   82 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            4456678889999999999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHhhCCCCH
Q 008025          539 GTAREML-GYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       539 g~~~~~~-g~~~~A~~~~~~al~l~p~~~  566 (580)
                      |.++..+ |++++|+++++++++..|.+.
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            9999999 999999999999999999763

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.49  E-value=4.5e-14  Score=118.60  Aligned_cols=101  Identities=14%  Similarity=0.130  Sum_probs=91.4

Q ss_pred             HccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 008025          476 KDKQWLKAISFYTEAIKL---NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAI  552 (580)
Q Consensus       476 ~~g~~~~Ai~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~  552 (580)
                      ..|++++|+..|++++++   +|++..+++++|.+|..+|++++|+++|+++++++|+++.+++++|.++..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   68899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          553 EDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       553 ~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      ++|++++++.|+++........+.
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHH
Confidence            999999999999998877666554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.48  E-value=3.1e-12  Score=115.48  Aligned_cols=133  Identities=17%  Similarity=0.126  Sum_probs=119.4

Q ss_pred             HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (580)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  525 (580)
                      ...+...+.......+.....++.+|..++..|++++|+..|+++++..|++..++..+|.++...|++++|++.+++++
T Consensus        24 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~  103 (186)
T 3as5_A           24 YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVA  103 (186)
T ss_dssp             HHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            33344444455555667788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          526 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       526 ~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +.+|++..+++.+|.++...|++++|+++++++++..|++..++..++.+...
T Consensus       104 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (186)
T 3as5_A          104 EANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ  156 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988887643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.47  E-value=2.9e-13  Score=132.59  Aligned_cols=104  Identities=36%  Similarity=0.479  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      ..+..++.+|+.+++.|+|++|+..|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..+++++|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCC
Q 008025          542 REMLGYYKEAIEDFSYALVLEPTN  565 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~p~~  565 (580)
                      |..+|++++|+++|+++++++|++
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccc
Confidence            999999999999999999999976

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.46  E-value=1.1e-13  Score=152.93  Aligned_cols=128  Identities=12%  Similarity=-0.026  Sum_probs=108.2

Q ss_pred             hhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      .+...+.+....+|++..+++.+|.+++..|+|++|++.|+++++++|++..+++++|.+|.++|++++ +++|++++++
T Consensus       451 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~  529 (681)
T 2pzi_A          451 KATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST  529 (681)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH
T ss_pred             HHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence            334444555556677888888888888888999999999999998888888888889999888898888 8888999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       528 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      +|++..+|+++|.+|..+|++++|+++|+++++++|++..++..++.+.
T Consensus       530 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          530 NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            9988888999999999999999999999999999998888888887764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.46  E-value=5.1e-14  Score=123.89  Aligned_cols=98  Identities=10%  Similarity=0.066  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       482 ~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      ++-..|+++++++|++..+++++|.+++++|+|++|++.|+++++++|+++.+|+++|.+|..+|+|++|+++|++++++
T Consensus        20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l   99 (151)
T 3gyz_A           20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL   99 (151)
T ss_dssp             HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            34466888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhhh
Q 008025          562 EPTNKRASLSADRLRKVF  579 (580)
Q Consensus       562 ~p~~~~~~~~l~~l~~~~  579 (580)
                      +|+++.++..++.+...+
T Consensus       100 ~P~~~~~~~~lg~~~~~l  117 (151)
T 3gyz_A          100 GKNDYTPVFHTGQCQLRL  117 (151)
T ss_dssp             SSSCCHHHHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHHHHHHc
Confidence            999999999999987654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.46  E-value=7.4e-13  Score=143.27  Aligned_cols=123  Identities=11%  Similarity=-0.019  Sum_probs=95.5

Q ss_pred             cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      ....+|.....++.+|..++..|+|++|++.|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++
T Consensus        15 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   94 (568)
T 2vsy_A           15 AVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA   94 (568)
T ss_dssp             ------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHH
Confidence            33445666777888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +++|.+|..+|++++|+++|+++++++|++..++..++.+...
T Consensus        95 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  137 (568)
T 2vsy_A           95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR  137 (568)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888777776543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.45  E-value=5.6e-13  Score=140.76  Aligned_cols=125  Identities=19%  Similarity=0.167  Sum_probs=115.4

Q ss_pred             ccccchhchHHHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHH
Q 008025          453 LSTNTFNQKQSAEIAKEKGNQAYKD---------KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES--------GSFL  515 (580)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~---------g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~--------~~~~  515 (580)
                      +......+|+ ...++.+|.++...         |++++|++.|+++++++|++..+|+++|.+|..+        |+++
T Consensus       160 ~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          160 FSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            3333444455 58999999999999         9999999999999999999999999999999999        9999


Q ss_pred             HHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          516 QAEADCTKAINLDK---KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       516 ~A~~~~~~al~l~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|+++|+++++++|   +++.+|+++|.+|..+|++++|+++|+++++++|++..++..++.+...
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~  304 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEF  304 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999   9999999999999999999999999999999999999999998887654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.2e-12  Score=125.25  Aligned_cols=117  Identities=33%  Similarity=0.440  Sum_probs=112.6

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      ..+.....++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..+|++++|+++++++++++|++..+++.+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  213 (258)
T 3uq3_A          134 VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK  213 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHH
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLE------PTNKRASLSADRL  575 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~------p~~~~~~~~l~~l  575 (580)
                      |.++..+|++++|.++|+++++++      |++..++..+..+
T Consensus       214 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            999999999999999999999999      9999998888765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.43  E-value=2.6e-12  Score=121.85  Aligned_cols=131  Identities=14%  Similarity=0.116  Sum_probs=108.7

Q ss_pred             hhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      .+...+.......+.....++.+|..+...|++++|++.|+++++..|++..++..+|.++..+|++++|++.+++++++
T Consensus        75 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  154 (243)
T 2q7f_A           75 RALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL  154 (243)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            33344444555566777888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       528 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|++..+++.+|.++...|++++|++.|+++++.+|++..++..++.+...
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  205 (243)
T 2q7f_A          155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY  205 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888877543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.43  E-value=2.3e-13  Score=150.24  Aligned_cols=120  Identities=16%  Similarity=0.077  Sum_probs=114.9

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      ..+|+....++.+|..+++.|+|++|++.|+++++++|+++.+|+++|.+|..+|++++|+++|+++++++|++..+|++
T Consensus       427 ~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~  506 (681)
T 2pzi_A          427 VDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLA  506 (681)
T ss_dssp             -CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred             cccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            45577888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|.+|.++|++++ +++|+++++++|++..++.+++.+...
T Consensus       507 lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~  546 (681)
T 2pzi_A          507 LAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA  546 (681)
T ss_dssp             HHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            9999999999999 999999999999999999999988654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.43  E-value=2.1e-13  Score=143.90  Aligned_cols=116  Identities=37%  Similarity=0.607  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      ++.+..++.+|..++++|+|++|++.|+++++++|++..+++++|.+|.++|++++|+++|+++++++|++..+++++|.
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~   82 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA   82 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45667788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      +|..+|++++|+++|+++++++|++..++..++.+.
T Consensus        83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  118 (477)
T 1wao_1           83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  118 (477)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999888774

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.41  E-value=4e-12  Score=123.03  Aligned_cols=114  Identities=19%  Similarity=0.124  Sum_probs=107.7

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      .+.....++.+|..++..|++++|+..|+++++++|++..+++.+|.+|..+|++++|+++|+++++++|++..+++++|
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025          540 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  573 (580)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  573 (580)
                      .+|..+|++++|+++|+++++++|++......+.
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  152 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY  152 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence            9999999999999999999999999986554433

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.41  E-value=2e-12  Score=132.48  Aligned_cols=127  Identities=18%  Similarity=0.100  Sum_probs=116.4

Q ss_pred             ccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008025          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (580)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (580)
                      +.......|.....+..+|..+.+.|++++|++.|+++++++|++..++.+++.++.+.|++++|++.|+++++++|++.
T Consensus       260 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  339 (388)
T 1w3b_A          260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA  339 (388)
T ss_dssp             HHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCH
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence            33444455677888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      .+++++|.+|.+.|++++|+++|+++++++|++..++..++.+...+
T Consensus       340 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~  386 (388)
T 1w3b_A          340 AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence            99999999999999999999999999999999999999999887654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.40  E-value=6.2e-12  Score=119.22  Aligned_cols=126  Identities=15%  Similarity=0.135  Sum_probs=112.0

Q ss_pred             cccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (580)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~  531 (580)
                      .+.......+.....++.+|..++..|++++|+..|+++++..|++..+++.+|.++...|++++|++.++++++.+|++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  192 (243)
T 2q7f_A          113 MFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH  192 (243)
T ss_dssp             HHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            33444455566778899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ..+++.+|.++..+|++++|+++|+++++++|++..++..+..+..
T Consensus       193 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          193 ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998877654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.40  E-value=7.7e-12  Score=116.38  Aligned_cols=104  Identities=17%  Similarity=0.129  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH----------
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV----------  532 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~----------  532 (580)
                      ....++.+|.+++..|++++|++.|+++++++|++..+++++|.+|..+|++++|+++|++++++.|++.          
T Consensus        36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  115 (213)
T 1hh8_A           36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ  115 (213)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence            4679999999999999999999999999999999999999999999999999999999999999888776          


Q ss_pred             ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          533 ------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       533 ------~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                            .+++++|.++..+|++++|+++|+++++++|++.
T Consensus       116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence                  9999999999999999999999999999999764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.40  E-value=1e-11  Score=105.50  Aligned_cols=111  Identities=32%  Similarity=0.432  Sum_probs=81.4

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK  533 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~  533 (580)
                      .......+.....++.+|..+...|++++|+..|+++++..|.+...++.++.++...|++++|++.++++++.+|++..
T Consensus        25 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  104 (136)
T 2fo7_A           25 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE  104 (136)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence            33344445566677777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      +++.+|.++...|++++|.++++++++++|+
T Consensus       105 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          105 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            7777777777777777777777777777765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.40  E-value=2.8e-12  Score=123.85  Aligned_cols=148  Identities=14%  Similarity=0.077  Sum_probs=118.2

Q ss_pred             ChHHHHHHHHHHHHHHHhHHHhhhccccccchhchHH---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHH
Q 008025          427 DRFLLDTVQNMYASLQEQADIATKSKLSTNTFNQKQS---AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATY  500 (580)
Q Consensus       427 d~~ll~la~~le~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~  500 (580)
                      ...++..+..+.   ...+...+...+.......|..   ..+++.+|.++++.|+|++|+..|+++++++|++   ..+
T Consensus        15 ~~~~~~~a~~~~---~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           15 PQEAFERAMEFY---NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             HHHHHHHHHHHH---HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             HHHHHHHHHHHH---HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            344555554443   2233333333444444444444   8899999999999999999999999999998854   678


Q ss_pred             HHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHH
Q 008025          501 YSNRAAAYLE--------SGSFLQAEADCTKAINLDKKNVKAY-----------------LRRGTAREMLGYYKEAIEDF  555 (580)
Q Consensus       501 ~~~la~~~~~--------~~~~~~A~~~~~~al~l~p~~~~a~-----------------~~lg~~~~~~g~~~~A~~~~  555 (580)
                      ++.+|.+|+.        +|++++|++.|+++++.+|++..++                 +.+|.+|..+|++++|+..|
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  171 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY  171 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            9999999999        9999999999999999999986665                 88999999999999999999


Q ss_pred             HHHHhhCCC---CHHHHHHHHHHHh
Q 008025          556 SYALVLEPT---NKRASLSADRLRK  577 (580)
Q Consensus       556 ~~al~l~p~---~~~~~~~l~~l~~  577 (580)
                      +++++.+|+   ...++..++.+..
T Consensus       172 ~~~l~~~p~~~~~~~a~~~l~~~~~  196 (261)
T 3qky_A          172 EAVFDAYPDTPWADDALVGAMRAYI  196 (261)
T ss_dssp             HHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHH
Confidence            999999998   4567777776543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.40  E-value=3.2e-12  Score=134.93  Aligned_cols=118  Identities=13%  Similarity=0.107  Sum_probs=112.9

Q ss_pred             chHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQW-LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~-~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      .+..+..++.+|..++..|+| ++|++.|+++++++|++..+|+++|.+|..+|++++|+++|+++++++|+ ..+++++
T Consensus        98 ~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~l  176 (474)
T 4abn_A           98 AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNL  176 (474)
T ss_dssp             CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHH
Confidence            456788999999999999999 99999999999999999999999999999999999999999999999999 7999999


Q ss_pred             HHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          539 GTAREML---------GYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       539 g~~~~~~---------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      |.+|..+         |++++|+++|+++++++|++..++..++.+...
T Consensus       177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  225 (474)
T 4abn_A          177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLS  225 (474)
T ss_dssp             HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999         999999999999999999999999999987643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.39  E-value=5e-12  Score=128.04  Aligned_cols=120  Identities=17%  Similarity=0.195  Sum_probs=113.5

Q ss_pred             chH--HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          460 QKQ--SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       460 ~~~--~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      .|.  ....+..+|..+...|++++|+..|+++++++|++..+++++|.++..+|++++|++.|+++++++|++..++++
T Consensus       211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  290 (368)
T 1fch_A          211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYN  290 (368)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence            345  678999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHhhh
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTN-----------KRASLSADRLRKVF  579 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~-----------~~~~~~l~~l~~~~  579 (580)
                      +|.+|..+|++++|+++|+++++++|++           ..++..++.+...+
T Consensus       291 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  343 (368)
T 1fch_A          291 LGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML  343 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence            9999999999999999999999999998           88999988876543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.38  E-value=7.8e-12  Score=119.48  Aligned_cols=115  Identities=21%  Similarity=0.253  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHcCCHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIK--------------------------LNGNNATYYSNRAAAYLESGSFLQA  517 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~--------------------------~~p~~~~~~~~la~~~~~~~~~~~A  517 (580)
                      ...++.+|..+...|++++|+..|+++++                          .+|++..+++.+|.++...|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            78999999999999999999999999999                          6677788999999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          518 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       518 ~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +++|+++++++|++..+++++|.++..+|++++|+++|+++++++|++..++..++.+...
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA  219 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.38  E-value=2.6e-12  Score=130.41  Aligned_cols=116  Identities=16%  Similarity=0.210  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      ....++.+|..+...|++++|++.|+++++++|++..+|+++|.+|..+|++++|+++|+++++++|++..+++++|.+|
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC  291 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHhh
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTN------------KRASLSADRLRKV  578 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~------------~~~~~~l~~l~~~  578 (580)
                      ..+|++++|+++|+++++++|++            ..++..++.+...
T Consensus       292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  339 (365)
T 4eqf_A          292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL  339 (365)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999883            5677777776543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.37  E-value=2.2e-12  Score=109.77  Aligned_cols=99  Identities=13%  Similarity=0.109  Sum_probs=89.7

Q ss_pred             hHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK  523 (580)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  523 (580)
                      .+...+...+...+..+|.+...++.+|.++++.|++++|+..|+++++++|++..+|+++|.+|..+|++++|+++|++
T Consensus        27 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~  106 (126)
T 4gco_A           27 GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED  106 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34445555556666778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHH
Q 008025          524 AINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       524 al~l~p~~~~a~~~lg~~~  542 (580)
                      +++++|++..++.+++.++
T Consensus       107 al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A          107 ALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHCcCCHHHHHHHHHhc
Confidence            9999999999999998764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.37  E-value=1.7e-11  Score=114.44  Aligned_cols=114  Identities=16%  Similarity=0.026  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--cCCCCHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-GSFLQAEADCTKAIN--LDKKNVKAYLRR  538 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~--l~p~~~~a~~~l  538 (580)
                      .....++.+|..+...|++++|++.|+++++.+|++..++..+|.++... |++++|++.++++++  .+|.+..+++++
T Consensus        40 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l  119 (225)
T 2vq2_A           40 KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK  119 (225)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH
Confidence            33444455555555555555555555555555555555555555555555 555555555555555  333344455555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      |.++...|++++|+++|+++++.+|++..++..++.+
T Consensus       120 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  156 (225)
T 2vq2_A          120 GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART  156 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            5555555555555555555555555555444444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.37  E-value=8.4e-12  Score=116.12  Aligned_cols=114  Identities=23%  Similarity=0.231  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      .....++.+|..++..|+|++|+..|++++  +| ++.+++++|.+|..+|++++|+++|+++++++|++..+++++|.+
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~   80 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            456678999999999999999999999995  34 789999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHhh
Q 008025          542 REMLGYYKEAIEDFSYALVLEPTNK----------------RASLSADRLRKV  578 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~p~~~----------------~~~~~l~~l~~~  578 (580)
                      |..+|++++|+++|++++++.|++.                .++..++.+...
T Consensus        81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  133 (213)
T 1hh8_A           81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK  133 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHH
Confidence            9999999999999999999998877                888888876543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.37  E-value=9.6e-12  Score=126.13  Aligned_cols=123  Identities=15%  Similarity=0.087  Sum_probs=71.6

Q ss_pred             ccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------------------------------------
Q 008025          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN--------------------------------------  496 (580)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--------------------------------------  496 (580)
                      ......|.....++.+|..+...|++++|+..|+++++++|+                                      
T Consensus       124 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  203 (365)
T 4eqf_A          124 RCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA  203 (365)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            333444555555666666666666666666666666554332                                      


Q ss_pred             --------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025          497 --------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  568 (580)
Q Consensus       497 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  568 (580)
                              ++.+++++|.+|..+|++++|+++|+++++++|++..+|+++|.+|..+|++++|+++|+++++++|++..+
T Consensus       204 l~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  283 (365)
T 4eqf_A          204 AHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS  283 (365)
T ss_dssp             HHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHH
Confidence                    445555556666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHh
Q 008025          569 SLSADRLRK  577 (580)
Q Consensus       569 ~~~l~~l~~  577 (580)
                      +..++.+..
T Consensus       284 ~~~l~~~~~  292 (365)
T 4eqf_A          284 RYNLGISCI  292 (365)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            655555543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.37  E-value=1.1e-11  Score=118.41  Aligned_cols=115  Identities=17%  Similarity=0.107  Sum_probs=57.8

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--LDKKNVKAYLRR  538 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--l~p~~~~a~~~l  538 (580)
                      +.....++.+|..+...|++++|++.|+++++.+|++..+++.+|.+|...|++++|+++++++++  .+|.+..+++.+
T Consensus        68 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l  147 (252)
T 2ho1_A           68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL  147 (252)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHH
Confidence            334444455555555555555555555555555555555555555555555555555555555554  444444455555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      |.++..+|++++|+++|+++++++|++..++..++.+
T Consensus       148 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  184 (252)
T 2ho1_A          148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL  184 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            5555555555555555555555555554444444443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.36  E-value=1.3e-11  Score=104.70  Aligned_cols=113  Identities=30%  Similarity=0.415  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      ..++.+|..++..|++++|+..|+++++.+|++...++.++.++...+++++|++.++++++.+|++..+++.+|.++..
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          545 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       545 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      .|++++|++.++++++..|++..++..++.+..
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  114 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY  114 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            999999999999999999999999988887654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.36  E-value=8.5e-12  Score=127.76  Aligned_cols=122  Identities=21%  Similarity=0.162  Sum_probs=93.3

Q ss_pred             cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      .....|+....+..+|..+.+.|++++|++.|+++++++|+++.+++++|.++.+.|++++|++.|+++++++|++..++
T Consensus       229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  308 (388)
T 1w3b_A          229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSL  308 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHH
Confidence            33445666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +++|.++...|++++|++.|+++++++|++..++..++.+..
T Consensus       309 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  350 (388)
T 1w3b_A          309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ  350 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777776654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.36  E-value=4.7e-12  Score=122.22  Aligned_cols=112  Identities=18%  Similarity=0.226  Sum_probs=104.5

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---VK  533 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---~~  533 (580)
                      ++..+..++.+|..+++.|+|++|+..|+++++.+|++   ..+++.+|.+|+++|++++|++.|+++++++|++   ..
T Consensus        11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            45678899999999999999999999999999999999   9999999999999999999999999999998854   67


Q ss_pred             HHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025          534 AYLRRGTAREM--------LGYYKEAIEDFSYALVLEPTNKRASLS  571 (580)
Q Consensus       534 a~~~lg~~~~~--------~g~~~~A~~~~~~al~l~p~~~~~~~~  571 (580)
                      +++.+|.++..        +|++++|++.|+++++++|++..+...
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  136 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDA  136 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHH
Confidence            89999999999        999999999999999999998777633

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.36  E-value=5.3e-12  Score=114.14  Aligned_cols=134  Identities=11%  Similarity=0.022  Sum_probs=113.7

Q ss_pred             hHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Q 008025          444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL-ESGSFLQAEADCT  522 (580)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~  522 (580)
                      .+...+...+......+|++..+++.+|.++...|++++|+..|+++++.+| ++..+..++.+.+ ..++..+|++.++
T Consensus        20 g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~   98 (176)
T 2r5s_A           20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLE   98 (176)
T ss_dssp             TCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHH
Confidence            3444455556666777899999999999999999999999999999999999 8887777665543 3334456899999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhh
Q 008025          523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN--KRASLSADRLRKV  578 (580)
Q Consensus       523 ~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~~  578 (580)
                      ++++++|+++.+++++|.++..+|++++|+..|+++++++|+.  ..++..++.+...
T Consensus        99 ~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~  156 (176)
T 2r5s_A           99 QELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA  156 (176)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999975  5688888877654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.35  E-value=8.8e-12  Score=123.87  Aligned_cols=126  Identities=16%  Similarity=0.203  Sum_probs=115.6

Q ss_pred             cccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 008025          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN---------GNNATYYSNRAAAYLESGSFLQAEADCT  522 (580)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~---------p~~~~~~~~la~~~~~~~~~~~A~~~~~  522 (580)
                      .+.......|.....++.+|..+...|++++|+..|+++++..         |....+++++|.+|..+|++++|+++++
T Consensus       181 ~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  260 (330)
T 3hym_B          181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR  260 (330)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3334444557778899999999999999999999999999986         6778899999999999999999999999


Q ss_pred             HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       523 ~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++++++|++..+++++|.++..+|++++|+++|+++++++|++..++..++.+..
T Consensus       261 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             HHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred             HHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998763

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.35  E-value=1.9e-11  Score=116.85  Aligned_cols=114  Identities=19%  Similarity=0.158  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      .....+..+|..++..|++++|++.|+++++  ..|.+..+++.+|.+|..+|++++|+++++++++.+|++..+++.+|
T Consensus       103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la  182 (252)
T 2ho1_A          103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA  182 (252)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence            3444555555555555555555555555555  44555555555555555555555555555555555555555555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          540 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      .++..+|++++|++.|+++++..|++..++..+..+
T Consensus       183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  218 (252)
T 2ho1_A          183 DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRL  218 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence            555555555555555555555555555555444443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.34  E-value=1.4e-11  Score=119.16  Aligned_cols=116  Identities=21%  Similarity=0.163  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      ....++.+|.++...|++++|++.|+++++++|++..++..+|.+|..+|++++|+++|+++++++|++..+++++|...
T Consensus        73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~  152 (272)
T 3u4t_A           73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY  152 (272)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence            36678999999999999999999999999999999999999999999999999999999999999999999999999555


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +..+++++|+++|+++++++|++..++..++.+...
T Consensus       153 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~  188 (272)
T 3u4t_A          153 YYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAA  188 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            566699999999999999999999999888887654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.34  E-value=2.4e-11  Score=113.41  Aligned_cols=120  Identities=17%  Similarity=0.108  Sum_probs=112.0

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      ..+.....++.+|..++..|++++|++.|+++++.+|++..+++.+|.+|...|++++|++.++++++++|++..+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHhh
Q 008025          539 GTAREML-GYYKEAIEDFSYALV--LEPTNKRASLSADRLRKV  578 (580)
Q Consensus       539 g~~~~~~-g~~~~A~~~~~~al~--l~p~~~~~~~~l~~l~~~  578 (580)
                      |.++... |++++|+++|+++++  ..|.+..++..++.+...
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  125 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK  125 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH
Confidence            9999999 999999999999999  677778888888876543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.34  E-value=1.5e-11  Score=110.84  Aligned_cols=118  Identities=13%  Similarity=0.097  Sum_probs=111.8

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      ......++.+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|++.++++++.+|++..+++.+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   84 (186)
T 3as5_A            5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL   84 (186)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ++...|++++|.++++++++++|++..++..++.+...
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  122 (186)
T 3as5_A           85 TYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN  122 (186)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988877543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.34  E-value=2.7e-12  Score=124.23  Aligned_cols=122  Identities=12%  Similarity=0.054  Sum_probs=109.4

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p  529 (580)
                      ......+|.....++.+|.+++..|+|++|++.|+++++ .|.+    ..+++.+|.+|..+|++++|+++|+++++++|
T Consensus        27 ~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~  105 (272)
T 3u4t_A           27 NKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDT  105 (272)
T ss_dssp             HHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc
Confidence            333444566677899999999999999999999999999 4443    45699999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHH
Q 008025          530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD-RLR  576 (580)
Q Consensus       530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~-~l~  576 (580)
                      ++..+++++|.++..+|++++|+++|+++++++|++..++..++ .+.
T Consensus       106 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  153 (272)
T 3u4t_A          106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY  153 (272)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998 543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.34  E-value=8e-13  Score=109.06  Aligned_cols=95  Identities=24%  Similarity=0.350  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------VKAYL  536 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~~a~~  536 (580)
                      .+..++.+|..++..|+|++|++.|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++      ..+++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999      99999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHH
Q 008025          537 RRGTAREMLGYYKEAIEDFSY  557 (580)
Q Consensus       537 ~lg~~~~~~g~~~~A~~~~~~  557 (580)
                      ++|.++..+|++++|++.+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999998888776654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.34  E-value=3.5e-12  Score=125.25  Aligned_cols=124  Identities=9%  Similarity=-0.055  Sum_probs=87.5

Q ss_pred             cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      ....+|++..+++.+|.++...|++++|+..|+++++.+|+....+...+..+...++.++|++.|+++++++|++..++
T Consensus       143 al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~  222 (287)
T 3qou_A          143 AWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALA  222 (287)
T ss_dssp             HHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHH
Confidence            33344444555555555555555555555555555555554444444444444455555556677777788899999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhhh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTN--KRASLSADRLRKVF  579 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~l~~l~~~~  579 (580)
                      +++|.+|...|++++|++.|+++++++|++  ..++..++.+.+.+
T Consensus       223 ~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~  268 (287)
T 3qou_A          223 TQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL  268 (287)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence            999999999999999999999999999998  88999998887654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.33  E-value=2e-12  Score=113.50  Aligned_cols=97  Identities=19%  Similarity=0.214  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       482 ~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      ++-..|+++++++|++..+++++|.+++..|+|++|++.|+++++++|+++.+|+++|.++..+|++++|+++|++++++
T Consensus         5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            34457889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHhh
Q 008025          562 EPTNKRASLSADRLRKV  578 (580)
Q Consensus       562 ~p~~~~~~~~l~~l~~~  578 (580)
                      +|+++.++..++.+...
T Consensus        85 ~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             STTCTHHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHH
Confidence            99999999999987654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.33  E-value=1.8e-11  Score=121.40  Aligned_cols=118  Identities=13%  Similarity=0.133  Sum_probs=112.3

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      +.....+..+|..+...|++++|++.|+++++.+|++..++..+|.++...|++++|++.++++++++|++..+++.+|.
T Consensus       169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  248 (327)
T 3cv0_A          169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV  248 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHhh
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPT------------NKRASLSADRLRKV  578 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~------------~~~~~~~l~~l~~~  578 (580)
                      ++..+|++++|+++|++++++.|+            +..++..++.+...
T Consensus       249 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  298 (327)
T 3cv0_A          249 SYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV  298 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence            999999999999999999999999            78899888887654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.33  E-value=1.8e-11  Score=115.48  Aligned_cols=116  Identities=13%  Similarity=0.030  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------cCCHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT---YYSNRAAAYLE------------------SGSFLQAEADC  521 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~---~~~~la~~~~~------------------~~~~~~A~~~~  521 (580)
                      ...+++.+|.++++.|+|++|+..|+++++.+|++..   +++.+|.++..                  +|++++|++.|
T Consensus        40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  119 (225)
T 2yhc_A           40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDF  119 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHH
Confidence            4578999999999999999999999999999999864   89999999987                  57899999999


Q ss_pred             HHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHhh
Q 008025          522 TKAINLDKKNVKAY-----------------LRRGTAREMLGYYKEAIEDFSYALVLEPTNK---RASLSADRLRKV  578 (580)
Q Consensus       522 ~~al~l~p~~~~a~-----------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~l~~~  578 (580)
                      +++++.+|++..++                 +.+|.+|.+.|++++|+..|+++++..|+++   .++..++.+...
T Consensus       120 ~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~  196 (225)
T 2yhc_A          120 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQ  196 (225)
T ss_dssp             HHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHH
Confidence            99999999987554                 6789999999999999999999999999987   567777766544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.32  E-value=2.3e-11  Score=120.82  Aligned_cols=122  Identities=16%  Similarity=-0.015  Sum_probs=113.4

Q ss_pred             chhchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          457 TFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      ....|.....++.+|..++..| ++++|+..|+++++++|++..++..+|.++..+|++++|++.++++++++|++..++
T Consensus        83 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  162 (330)
T 3hym_B           83 VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM  162 (330)
T ss_dssp             HHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHH
T ss_pred             HHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHH
Confidence            3345677889999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +.+|.++...|++++|+++|+++++++|++..++..++.+...
T Consensus       163 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  205 (330)
T 3hym_B          163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ  205 (330)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998887543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.31  E-value=1.5e-11  Score=132.92  Aligned_cols=126  Identities=12%  Similarity=-0.022  Sum_probs=114.0

Q ss_pred             HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (580)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  525 (580)
                      ...+...+.+....+|++...++.+|..+...|++++|++.|+++++++|++..+++++|.+|.++|++++|++.|++++
T Consensus        39 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al  118 (568)
T 2vsy_A           39 TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH  118 (568)
T ss_dssp             HHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33344444555556778899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025          526 NLDKKNVKAYLRRGTAREML---GYYKEAIEDFSYALVLEPTNKRASLS  571 (580)
Q Consensus       526 ~l~p~~~~a~~~lg~~~~~~---g~~~~A~~~~~~al~l~p~~~~~~~~  571 (580)
                      +++|++..+++++|.++..+   |++++|.+.|+++++.+|++...+..
T Consensus       119 ~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  167 (568)
T 2vsy_A          119 QLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAF  167 (568)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChHHH
Confidence            99999999999999999999   99999999999999999987655543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.31  E-value=4.2e-11  Score=117.71  Aligned_cols=99  Identities=13%  Similarity=0.059  Sum_probs=73.4

Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH-HHH
Q 008025          475 YKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKE-AIE  553 (580)
Q Consensus       475 ~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~-A~~  553 (580)
                      ...|++++|+..|+++++.+|+++.+++++|.++.++|++++|++.|+++++++|+++.+++++|.++..+|++++ +.+
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~  256 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNR  256 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHH
Confidence            3446777777777777777777777777777777777777777777777777777777777777777777777765 456


Q ss_pred             HHHHHHhhCCCCHHHHHHHH
Q 008025          554 DFSYALVLEPTNKRASLSAD  573 (580)
Q Consensus       554 ~~~~al~l~p~~~~~~~~l~  573 (580)
                      +++++++++|+++.+.....
T Consensus       257 ~~~~~~~~~P~~~~~~d~~~  276 (291)
T 3mkr_A          257 YLSQLKDAHRSHPFIKEYRA  276 (291)
T ss_dssp             HHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHH
Confidence            77777777777777665443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.31  E-value=5.8e-11  Score=119.19  Aligned_cols=113  Identities=18%  Similarity=0.269  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT----YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      ...+|..+++.|++++|+..|+++++..|++..    .+..+|.++.++|++++|++.|+++++++|+++.+++.+|.++
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            345699999999999999999999999999874    4678999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ..+|++++|+++|+++++++|++..++..+..+.+.+
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.31  E-value=1.6e-11  Score=115.84  Aligned_cols=111  Identities=16%  Similarity=0.149  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH---HHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK---AYL  536 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~---a~~  536 (580)
                      .+..++.+|..+++.|+|++|+..|+++++..|++   ..+++.+|.+|+++|++++|++.|+++++++|++..   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            35678999999999999999999999999999886   479999999999999999999999999999999864   899


Q ss_pred             HHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025          537 RRGTAREM------------------LGYYKEAIEDFSYALVLEPTNKRASLSAD  573 (580)
Q Consensus       537 ~lg~~~~~------------------~g~~~~A~~~~~~al~l~p~~~~~~~~l~  573 (580)
                      .+|.++..                  +|++++|++.|+++++.+|++..+...+.
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~  137 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATK  137 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHH
Confidence            99999987                  57899999999999999999987665433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.31  E-value=2.3e-11  Score=101.28  Aligned_cols=94  Identities=13%  Similarity=0.094  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          482 KAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       482 ~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      +|++.|+++++.+|++..+++++|.+|..+|++++|+++|+++++++|++..+|+++|.+|..+|++++|+++|++++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC--CHHHHHHHHHH
Q 008025          562 EPT--NKRASLSADRL  575 (580)
Q Consensus       562 ~p~--~~~~~~~l~~l  575 (580)
                      .|+  +......+...
T Consensus        83 ~~~~~~~~~~~~l~~~   98 (115)
T 2kat_A           83 AQSRGDQQVVKELQVF   98 (115)
T ss_dssp             HHHHTCHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHH
Confidence            884  44555444443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.30  E-value=4e-11  Score=117.87  Aligned_cols=118  Identities=9%  Similarity=-0.088  Sum_probs=104.6

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA--YLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      +.+...+..+|.++.+.|++++|++.|+++++.+|++.......+++  +...|++++|+..|+++++.+|+++.+++++
T Consensus       127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l  206 (291)
T 3mkr_A          127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ  206 (291)
T ss_dssp             CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            46678899999999999999999999999999999986554444433  3344899999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          539 GTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      |.++..+|++++|+++|+++++++|+++.++.+++.+...
T Consensus       207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~  246 (291)
T 3mkr_A          207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQH  246 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999876543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.29  E-value=4e-11  Score=125.01  Aligned_cols=121  Identities=26%  Similarity=0.269  Sum_probs=110.2

Q ss_pred             ccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Q 008025          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA  534 (580)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a  534 (580)
                      .....+|.++..++.+|..+++.|+|++|+..|+++++.+|++..+++.+|.+|..+|++++|+++|+++++++|++..+
T Consensus        17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~   96 (450)
T 2y4t_A           17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA   96 (450)
T ss_dssp             ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            33445678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q 008025          535 YLRRGTAREMLGYYKEAIEDFSYALVLEPTNK---RASLSADRL  575 (580)
Q Consensus       535 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~l~~l  575 (580)
                      ++.+|.+|..+|++++|++.|+++++++|++.   .++..+..+
T Consensus        97 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  140 (450)
T 2y4t_A           97 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS  140 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            99999999999999999999999999999998   777766443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.28  E-value=5.6e-11  Score=119.31  Aligned_cols=120  Identities=16%  Similarity=0.070  Sum_probs=69.5

Q ss_pred             chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHH
Q 008025          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---NNATYYSNR------------AAAYLESGSFLQAEADC  521 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---~~~~~~~~l------------a~~~~~~~~~~~A~~~~  521 (580)
                      ....|.....++.+|..+...|++++|+..|+++++.+|   ++..++..+            |.++...|++++|++.+
T Consensus        64 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  143 (359)
T 3ieg_A           64 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFL  143 (359)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            333444455555555555555555555555555555555   555555444            45555555555555555


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       522 ~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      +++++.+|++..+++.+|.++..+|++++|++.++++++++|++..++..++.+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  198 (359)
T 3ieg_A          144 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY  198 (359)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5555555566666666666666666666666666666666666666666555544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.26  E-value=1.2e-10  Score=117.72  Aligned_cols=124  Identities=11%  Similarity=0.049  Sum_probs=77.2

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------------------------------------
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------------------------------------  496 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------------------------------------  496 (580)
                      .......|.....+..+|..+...|++++|++.|++++++.|+                                     
T Consensus       122 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  201 (368)
T 1fch_A          122 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVK  201 (368)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHH
Confidence            3333444555566666666666666666666666666655443                                     


Q ss_pred             --------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          497 --------------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       497 --------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                                    +..+++++|.+|...|++++|++.|+++++++|++..+++++|.++..+|++++|+++|+++++++
T Consensus       202 ~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  281 (368)
T 1fch_A          202 ELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ  281 (368)
T ss_dssp             HHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                          345556666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHHh
Q 008025          563 PTNKRASLSADRLRK  577 (580)
Q Consensus       563 p~~~~~~~~l~~l~~  577 (580)
                      |++..++..++.+..
T Consensus       282 ~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          282 PGYIRSRYNLGISCI  296 (368)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHH
Confidence            666666666665543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.26  E-value=1.1e-10  Score=112.72  Aligned_cols=117  Identities=16%  Similarity=0.067  Sum_probs=103.3

Q ss_pred             ccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~  530 (580)
                      ..+.......|.....++.+|..+...|++++|++.|+++++++|++..+++.+|.+|..+|++++|++.++++++++|+
T Consensus        64 ~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  143 (275)
T 1xnf_A           64 NDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN  143 (275)
T ss_dssp             HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            33344444566778899999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CH----------------------------------------------------------------------HHHHHHHH
Q 008025          531 NV----------------------------------------------------------------------KAYLRRGT  540 (580)
Q Consensus       531 ~~----------------------------------------------------------------------~a~~~lg~  540 (580)
                      +.                                                                      .+++.+|.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~  223 (275)
T 1xnf_A          144 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK  223 (275)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence            64                                                                      56788899


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKR  567 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~  567 (580)
                      ++..+|++++|+.+|+++++++|++..
T Consensus       224 ~~~~~g~~~~A~~~~~~al~~~p~~~~  250 (275)
T 1xnf_A          224 YYLSLGDLDSATALFKLAVANNVHNFV  250 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence            999999999999999999999997755

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.26  E-value=9.2e-11  Score=122.26  Aligned_cols=111  Identities=18%  Similarity=0.273  Sum_probs=104.4

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (580)
Q Consensus       468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~  543 (580)
                      ..+|..+++.|++++|+..|+++++..|++.    ..+..+|.++.++|++++|++.++++++++|++..+|+.+|.++.
T Consensus       261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  340 (450)
T 2y4t_A          261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL  340 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4449999999999999999999999999985    488999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          544 MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       544 ~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ..|++++|+++|+++++++|+++.++..++.+...
T Consensus       341 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          341 IEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL  375 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999976543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.26  E-value=8.4e-11  Score=104.20  Aligned_cols=113  Identities=16%  Similarity=0.088  Sum_probs=99.6

Q ss_pred             hhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      +...+.......+.....++.+|.+++..|+|++|+..|+++++++|++..+++++|.++..+|++++|+++|+++++++
T Consensus        32 A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~  111 (166)
T 1a17_A           32 AIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK  111 (166)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            33334444455677789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhh
Q 008025          529 KKNVKAYLRRGTA--REMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       529 p~~~~a~~~lg~~--~~~~g~~~~A~~~~~~al~l  561 (580)
                      |++..++..++.+  +...|++++|++.+++..++
T Consensus       112 p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          112 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999988555554  88899999999999988765

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.25  E-value=1.4e-11  Score=111.18  Aligned_cols=107  Identities=14%  Similarity=0.092  Sum_probs=96.5

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHcCCH--
Q 008025          472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA-REMLGYY--  548 (580)
Q Consensus       472 ~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~-~~~~g~~--  548 (580)
                      ..++..|++++|+..|+++++.+|++..+++.+|.+|...|++++|+++|+++++++|++..+++++|.+ +...|++  
T Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence            3456789999999999999999999999999999999999999999999999999999999999999999 8899999  


Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          549 KEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       549 ~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ++|+++|+++++++|++..++..++.+...
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~  127 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFM  127 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            999999999999999999999999887643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.25  E-value=8.3e-11  Score=92.92  Aligned_cols=85  Identities=34%  Similarity=0.476  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      .....++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..++++++|+++++++++++|++..+++++|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            45677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcC
Q 008025          542 REMLG  546 (580)
Q Consensus       542 ~~~~g  546 (580)
                      +..+|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            76654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.25  E-value=1.4e-11  Score=106.99  Aligned_cols=94  Identities=17%  Similarity=0.256  Sum_probs=87.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          485 SFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       485 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      ..|+++++++|++...++.+|.+++..|++++|++.|+++++++|+++.+|+++|.++..+|++++|+++|+++++++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            56888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhh
Q 008025          565 NKRASLSADRLRKV  578 (580)
Q Consensus       565 ~~~~~~~l~~l~~~  578 (580)
                      ++.++..++.+...
T Consensus        85 ~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           85 EPRFPFHAAECHLQ   98 (142)
T ss_dssp             CTHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHH
Confidence            99999999987654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.24  E-value=7.8e-11  Score=118.37  Aligned_cols=98  Identities=19%  Similarity=0.132  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~  543 (580)
                      ...++++|.++++.|+|++|+..|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++++++.++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHH-HHHHHHHHhh
Q 008025          544 MLGYYKEA-IEDFSYALVL  561 (580)
Q Consensus       544 ~~g~~~~A-~~~~~~al~l  561 (580)
                      .++++++| .+.|++.+..
T Consensus       276 ~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          276 RIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            99999999 5567766644

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.24  E-value=1.1e-10  Score=126.57  Aligned_cols=123  Identities=17%  Similarity=0.124  Sum_probs=107.9

Q ss_pred             ccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 008025          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNN-ATYYSNRAAAYLESGSFLQAEADCTKAINL  527 (580)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~l  527 (580)
                      ......+.+...+..++..+.+.|++++|++.|+++++.      +|++ ..+|..++.+|.+.|++++|++.+++++++
T Consensus       466 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  545 (597)
T 2xpi_A          466 SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL  545 (597)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            333445567788899999999999999999999999988      5554 788999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          528 DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       528 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +|++..+|+.+|.+|...|++++|+++|+++++++|+++.++..++.+..
T Consensus       546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998887653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.23  E-value=3.8e-11  Score=117.79  Aligned_cols=118  Identities=12%  Similarity=0.023  Sum_probs=111.0

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      |.....++.+|..+...|++++|+..|+++++++|++..+++++|.+|..+|++++|++.++++++.+|++...+...+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999988888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .+...++.++|++.|+++++++|++..++..++.+...
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~  231 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQ  231 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999988654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.22  E-value=1.9e-11  Score=106.22  Aligned_cols=76  Identities=17%  Similarity=0.123  Sum_probs=69.9

Q ss_pred             chhchHHHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHH
Q 008025          457 TFNQKQSAEIAKEKGNQAYKDKQW----------LKAISFYTEAIKLNGNNATYYSNRAAAYLESG-----------SFL  515 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~----------~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~  515 (580)
                      ...+|++++.|+++|.++...+++          ++|+..|+++++++|++..+|+++|.+|..+|           +++
T Consensus        29 i~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~  108 (158)
T 1zu2_A           29 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFD  108 (158)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHH
Confidence            335678999999999999999876          59999999999999999999999999999885           899


Q ss_pred             HHHHHHHHHHHcCCCCH
Q 008025          516 QAEADCTKAINLDKKNV  532 (580)
Q Consensus       516 ~A~~~~~~al~l~p~~~  532 (580)
                      +|+++|++|++++|++.
T Consensus       109 eA~~~~~kAl~l~P~~~  125 (158)
T 1zu2_A          109 LATQFFQQAVDEQPDNT  125 (158)
T ss_dssp             HHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhCCCCH
Confidence            99999999999999975

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.21  E-value=1.1e-10  Score=114.90  Aligned_cols=116  Identities=13%  Similarity=0.078  Sum_probs=101.5

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC--
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLES-GSFLQAEADCTKAINLDKKN--  531 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~l~p~~--  531 (580)
                      ...+..+.++|.++.+.|++++|+.+|++++++.+..      ..++.++|.+|... |++++|+++|++++++.|.+  
T Consensus        74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~  153 (292)
T 1qqe_A           74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence            3457899999999999999999999999999997653      56899999999996 99999999999999998754  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHH
Q 008025          532 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR-------ASLSADRLR  576 (580)
Q Consensus       532 ----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~-------~~~~l~~l~  576 (580)
                          ..++.++|.++..+|+|++|+++|++++++.|++..       .+..++.+.
T Consensus       154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  209 (292)
T 1qqe_A          154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ  209 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence                568999999999999999999999999999998754       445555544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.19  E-value=3.1e-11  Score=97.43  Aligned_cols=92  Identities=12%  Similarity=0.106  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025          467 AKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREML  545 (580)
Q Consensus       467 ~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~  545 (580)
                      .+.+|..+++.|+|++|+..|+++++.+|++.. +++++|.+|..+|++++|+++|+++++++|++..++++        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            367899999999999999999999999999999 99999999999999999999999999999999998865        


Q ss_pred             CCHHHHHHHHHHHHhhCCCCH
Q 008025          546 GYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       546 g~~~~A~~~~~~al~l~p~~~  566 (580)
                      +.+.++..+|+++++.+|++.
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHhccCcccc
Confidence            667888999999888888764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.19  E-value=3e-10  Score=111.55  Aligned_cols=130  Identities=10%  Similarity=-0.088  Sum_probs=119.5

Q ss_pred             hhccccccchhchHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHHHH
Q 008025          449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAY----LES---GSFLQAEA  519 (580)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~----~~~---~~~~~A~~  519 (580)
                      +.......+..+|+...+|+.++.++...+  +++++++.+++++..+|++..+|+.++.++    ..+   ++++++++
T Consensus        52 aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           52 ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            334445566788999999999999999999  999999999999999999999999999999    777   78999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          520 DCTKAINLDKKNVKAYLRRGTAREMLGYYK--EAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       520 ~~~~al~l~p~~~~a~~~lg~~~~~~g~~~--~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +++++++.+|+|..+|++++.++..+++++  +++++++++++++|.|..+|.+.+.+...
T Consensus       132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~  192 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS  192 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999  99999999999999999999988877543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.19  E-value=2.5e-11  Score=109.69  Aligned_cols=116  Identities=9%  Similarity=-0.040  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      ...+.++.+|..++..|++++|+..|+++++.+|++..+++++|.+|..+|++++|++.++++++++| ++..+..++.+
T Consensus         4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~   82 (176)
T 2r5s_A            4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKL   82 (176)
T ss_dssp             --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999 88777666655


Q ss_pred             HH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          542 RE-MLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       542 ~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .. ..++..+|++.|+++++++|++..++..++.+...
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~  120 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ  120 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            33 33344568999999999999999999999987654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.18  E-value=2.2e-10  Score=122.97  Aligned_cols=128  Identities=9%  Similarity=0.009  Sum_probs=120.2

Q ss_pred             ccccccchhchHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHH
Q 008025          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESG--SFLQAE  518 (580)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~----------~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~  518 (580)
                      ......+..+|+...+|+.++.++.+.++          ++++++.|+++++.+|++..+|+.+++++.+++  ++++++
T Consensus        50 ~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el  129 (567)
T 1dce_A           50 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL  129 (567)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHH
Confidence            34455667789999999999999999998          999999999999999999999999999999999  779999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          519 ADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       519 ~~~~~al~l~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ++++++++++|+|..+|++++.++..++ .+++++++++++++.+|+|..+|.+.+.+...
T Consensus       130 ~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          130 ELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence            9999999999999999999999999999 99999999999999999999999999987654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.17  E-value=2e-10  Score=112.93  Aligned_cols=107  Identities=18%  Similarity=0.179  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-
Q 008025          462 QSAEIAKEKGNQAYKD-KQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-  533 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~-g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~-  533 (580)
                      ..+..+.++|.++... |++++|+.+|++++++.|.+      ..++.++|.+|..+|+|++|+++|++++++.|++.. 
T Consensus       115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  194 (292)
T 1qqe_A          115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence            3467889999999996 99999999999999998754      568999999999999999999999999999987643 


Q ss_pred             ------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025          534 ------AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  568 (580)
Q Consensus       534 ------a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  568 (580)
                            +++++|.++..+|++++|+.+|+++++++|+....
T Consensus       195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence                  68999999999999999999999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.17  E-value=2.1e-10  Score=122.37  Aligned_cols=122  Identities=16%  Similarity=0.138  Sum_probs=108.0

Q ss_pred             cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      .....|. ...++.+|..++..|++++|+..|+++++.+|++..++..+|.+|..+|++++|++.|+++++++|++..++
T Consensus       269 ~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  347 (537)
T 3fp2_A          269 SINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY  347 (537)
T ss_dssp             HHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred             HHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3334455 678888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +.+|.++..+|++++|++.|+++++++|++..++..++.+...
T Consensus       348 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  390 (537)
T 3fp2_A          348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD  390 (537)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998888877543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.17  E-value=1.8e-10  Score=93.43  Aligned_cols=83  Identities=14%  Similarity=0.121  Sum_probs=61.0

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q 008025          493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASL  570 (580)
Q Consensus       493 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~  570 (580)
                      .+|+++.+++++|.+|+.+|++++|+++|+++++++|++..+|+++|.+|..+|++++|++.|++++++.|+  +.....
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~   81 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS   81 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence            367788888888888888888888888888888888888888888888888888888888888888877653  344444


Q ss_pred             HHHHH
Q 008025          571 SADRL  575 (580)
Q Consensus       571 ~l~~l  575 (580)
                      .+..+
T Consensus        82 ~l~~~   86 (100)
T 3ma5_A           82 ELQDA   86 (100)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.16  E-value=3.2e-10  Score=112.29  Aligned_cols=111  Identities=10%  Similarity=-0.117  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      +|..+|..+.+.|++++|+..|+++++..|.+...|...+...+. +|++++|++.|+++++++|+++.+|.+++..+..
T Consensus       136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  215 (308)
T 2ond_A          136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            455555555555555555555555555555554444444333222 4555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHHhh---CC-CCHHHHHHHHHHH
Q 008025          545 LGYYKEAIEDFSYALVL---EP-TNKRASLSADRLR  576 (580)
Q Consensus       545 ~g~~~~A~~~~~~al~l---~p-~~~~~~~~l~~l~  576 (580)
                      +|++++|+..|+++++.   .| +....|..+..+.
T Consensus       216 ~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~  251 (308)
T 2ond_A          216 LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE  251 (308)
T ss_dssp             TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            55555555555555553   33 2444555444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.16  E-value=1.6e-10  Score=114.45  Aligned_cols=108  Identities=16%  Similarity=0.197  Sum_probs=101.9

Q ss_pred             HH-HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 008025          471 GN-QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYK  549 (580)
Q Consensus       471 g~-~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~  549 (580)
                      +. .+...|++++|+..|+++++.+|++..++..+|.+|...|++++|++.++++++++|++..+++.+|.++...|+++
T Consensus       144 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  223 (327)
T 3cv0_A          144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ  223 (327)
T ss_dssp             --CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence            44 58889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          550 EAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       550 ~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|++.|+++++++|++..++..++.+...
T Consensus       224 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          224 EALDAYNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999887654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.16  E-value=5.6e-10  Score=120.91  Aligned_cols=120  Identities=15%  Similarity=0.023  Sum_probs=110.7

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      ...+.+...+..+|..+.+.|++++|++.|+++++++|++..+|+.++.+|.+.|++++|++.|+++++.+|++..+|+.
T Consensus       367 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  446 (597)
T 2xpi_A          367 DRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF  446 (597)
T ss_dssp             HHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHH
T ss_pred             hhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHH
Confidence            34566788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++.+|.+.|++++|++.|+++++++|+++.++..++.+..
T Consensus       447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (597)
T 2xpi_A          447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF  486 (597)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            9999999999999999999999999999999988887654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.15  E-value=3.3e-10  Score=119.95  Aligned_cols=106  Identities=32%  Similarity=0.473  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      .+.+..++.+|+.+++.|+|++|+..|+++++.+| +..+++.+|.+|.++|++++|+++|+++++++|++..+++.+|.
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~   81 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS   81 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence            35788999999999999999999999999999999 68999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPTNKR  567 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~~~~  567 (580)
                      ++..+|++++|++.|+++++++|.+..
T Consensus        82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           82 ANEGLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCCCccc
Confidence            999999999999999999999986543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.14  E-value=3.6e-10  Score=89.17  Aligned_cols=84  Identities=32%  Similarity=0.420  Sum_probs=79.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          496 NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       496 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      .+..+++.+|.++...+++++|+++|+++++++|++..+++++|.++..+|++++|+++|+++++++|++..++..++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             Hhhh
Q 008025          576 RKVF  579 (580)
Q Consensus       576 ~~~~  579 (580)
                      ....
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.14  E-value=2.4e-10  Score=101.77  Aligned_cols=101  Identities=11%  Similarity=0.032  Sum_probs=89.4

Q ss_pred             hHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          444 QADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK  523 (580)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  523 (580)
                      .+...+...+......+|.+...++.+|.++++.|+|++|+..|+++++++|++..+|+++|.+|..+|++++|+++|++
T Consensus        25 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  104 (164)
T 3sz7_A           25 KEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEK  104 (164)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            34444445555666667888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCHHHHHHHHHHHHH
Q 008025          524 AINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       524 al~l~p~~~~a~~~lg~~~~~  544 (580)
                      +++++|++..+|++++....+
T Consensus       105 al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A          105 GIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHhCCCchHHHHHHHHHHHH
Confidence            999999999988888876543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.13  E-value=4.7e-10  Score=94.87  Aligned_cols=101  Identities=14%  Similarity=-0.004  Sum_probs=88.8

Q ss_pred             HHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025          445 ADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (580)
Q Consensus       445 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  524 (580)
                      +...+...+......+|.+...++.+|.++++.|+|++|+..|+++++++|++..+++++|.+|..+|++++|+++|+++
T Consensus        19 ~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   98 (126)
T 3upv_A           19 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA   98 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            33344444455556677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcC------CCCHHHHHHHHHHHHHc
Q 008025          525 INLD------KKNVKAYLRRGTAREML  545 (580)
Q Consensus       525 l~l~------p~~~~a~~~lg~~~~~~  545 (580)
                      ++++      |++..++..++.+...+
T Consensus        99 l~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           99 RTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            9999      99999999888877553

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.13  E-value=3.5e-10  Score=109.30  Aligned_cols=119  Identities=15%  Similarity=0.158  Sum_probs=107.2

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINL----  527 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----  527 (580)
                      .+.....+..+|..++..|++++|+..|++++++.        |....++.++|.+|..+|++++|+++|++++++    
T Consensus        39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~  118 (283)
T 3edt_B           39 HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV  118 (283)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            36778899999999999999999999999999883        556789999999999999999999999999998    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhh
Q 008025          528 ----DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL--------EPTNKRASLSADRLRKV  578 (580)
Q Consensus       528 ----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~l~~l~~~  578 (580)
                          +|....+++++|.++..+|++++|+++|++++++        .|....++..++.+...
T Consensus       119 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  181 (283)
T 3edt_B          119 LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK  181 (283)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence                4677889999999999999999999999999999        67777788888877543

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.13  E-value=3.5e-11  Score=126.85  Aligned_cols=106  Identities=17%  Similarity=0.155  Sum_probs=95.7

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      +|.....++++|.++++.|+|++|++.|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++.+++
T Consensus        36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~  115 (477)
T 1wao_1           36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ  115 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH--HHHcCCHHHHHHHHH-----------HHHhhCCCC
Q 008025          540 TA--REMLGYYKEAIEDFS-----------YALVLEPTN  565 (580)
Q Consensus       540 ~~--~~~~g~~~~A~~~~~-----------~al~l~p~~  565 (580)
                      .+  +..+|++++|++.++           ++++++|+.
T Consensus       116 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          116 ECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            98  889999999999999           888887764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.13  E-value=3.3e-10  Score=112.25  Aligned_cols=131  Identities=10%  Similarity=-0.025  Sum_probs=106.6

Q ss_pred             hhhccccccch-hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          448 ATKSKLSTNTF-NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT-YYSNRAAAYLESGSFLQAEADCTKAI  525 (580)
Q Consensus       448 ~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al  525 (580)
                      .+...+..... ..|+....|..+|..+.+.|++++|++.|++++++.|.+.. +|.+++.++...|++++|++.|++++
T Consensus        82 ~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  161 (308)
T 2ond_A           82 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  161 (308)
T ss_dssp             HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            33444455555 46778888888999998999999999999999998888876 88889999888999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          526 NLDKKNVKAYLRRGTAREM-LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       526 ~l~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +.+|.+...|...+..... .|++++|++.|+++++++|+++.++..++.+...
T Consensus       162 ~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  215 (308)
T 2ond_A          162 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            9888888887766665443 6899999999999999999999888888876543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.12  E-value=5.6e-10  Score=94.07  Aligned_cols=97  Identities=16%  Similarity=0.020  Sum_probs=89.0

Q ss_pred             cccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (580)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~  531 (580)
                      .+.......+.....++.+|.+++..|++++|+..|+++++.+|++..+++.+|.++..+|++++|+++++++++++|++
T Consensus        34 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~  113 (131)
T 2vyi_A           34 FYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN  113 (131)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence            33344445567788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCH
Q 008025          532 VKAYLRRGTAREMLGYY  548 (580)
Q Consensus       532 ~~a~~~lg~~~~~~g~~  548 (580)
                      ..+++.++.++..+|++
T Consensus       114 ~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A          114 ETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhcC
Confidence            99999999999998875

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.12  E-value=3.8e-10  Score=95.70  Aligned_cols=99  Identities=16%  Similarity=0.072  Sum_probs=88.9

Q ss_pred             hhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 008025          449 TKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD  528 (580)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~  528 (580)
                      +...+.......+.....++.+|.+++..|++++|+..|+++++.+|++..+++++|.+|..+|++++|+++++++++++
T Consensus        35 A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  114 (133)
T 2lni_A           35 AMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD  114 (133)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence            33333444445667789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCC
Q 008025          529 KKNVKAYLRRGTAREMLGY  547 (580)
Q Consensus       529 p~~~~a~~~lg~~~~~~g~  547 (580)
                      |++..+++.++.++..+|+
T Consensus       115 p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A          115 SSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             GGGTHHHHHHHHHHHHHTC
T ss_pred             CCchHHHHHHHHHHHHhcC
Confidence            9999999999999988764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.12  E-value=7.1e-10  Score=116.44  Aligned_cols=113  Identities=17%  Similarity=0.070  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-----  528 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-----  528 (580)
                      .+..+..+|.++..+|+|++|+++|++++++         +|.....|.++|.+|..+|++++|+.++++++++.     
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3455666777777777777777777777765         45556677777777777777777777777777662     


Q ss_pred             ---CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          529 ---KKNVKAYLRRGTAREMLG--YYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       529 ---p~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                         +..+..+.++|.++...+  +|++|+++|+++++++|+++.++..++.+
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~  181 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA  181 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence               345667777776666543  57777777777777777777777666554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.11  E-value=7.2e-10  Score=106.46  Aligned_cols=127  Identities=14%  Similarity=0.061  Sum_probs=105.9

Q ss_pred             HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQAEADCTK  523 (580)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~  523 (580)
                      ...+...+.......|.+. ..+.+|..+++.++|++|+..|+++++..++.  ..+++++|.++..+|++++|+.+|++
T Consensus       118 y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~  196 (282)
T 4f3v_A          118 YADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTE  196 (282)
T ss_dssp             HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3333444444445567777 99999999999999999999999887653221  35899999999999999999999999


Q ss_pred             HHHcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025          524 AINLD--KK-NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADR  574 (580)
Q Consensus       524 al~l~--p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  574 (580)
                      ++...  |. ...+++++|.++.++|+.++|.+.|++++..+|+ ..++..|..
T Consensus       197 a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~  249 (282)
T 4f3v_A          197 ANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD  249 (282)
T ss_dssp             HHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred             HhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence            99655  55 6679999999999999999999999999999999 888777653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.11  E-value=3.1e-10  Score=96.50  Aligned_cols=81  Identities=19%  Similarity=0.160  Sum_probs=72.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHH
Q 008025          497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK-------RAS  569 (580)
Q Consensus       497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-------~~~  569 (580)
                      .+.++.++|.++++.|+|++|+++|+++++++|+++.+|+++|.+|..+|+|++|+++|+++++++|++.       .++
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            4568899999999999999999999999999999999999999999999999999999999999998764       355


Q ss_pred             HHHHHHHh
Q 008025          570 LSADRLRK  577 (580)
Q Consensus       570 ~~l~~l~~  577 (580)
                      ..++.+..
T Consensus        87 ~~lg~~~~   94 (127)
T 4gcn_A           87 SRAGNAFQ   94 (127)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.11  E-value=7.2e-10  Score=109.99  Aligned_cols=129  Identities=9%  Similarity=-0.114  Sum_probs=119.6

Q ss_pred             hccccccchhchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHH
Q 008025          450 KSKLSTNTFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES-G-SFLQAEADCTKAIN  526 (580)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~al~  526 (580)
                      .......+..+|+...+|+.++.++...+ +++++++.+++++..+|++..+|+.++.++..+ + ++++++++++++++
T Consensus        74 L~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~  153 (349)
T 3q7a_A           74 LELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL  153 (349)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            34445566778999999999999999999 599999999999999999999999999999998 8 89999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          527 LDKKNVKAYLRRGTAREMLGYYK--------EAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       527 l~p~~~~a~~~lg~~~~~~g~~~--------~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ++|+|..+|+.++.++.++++++        +++++++++++++|.|..+|.+.+.+...
T Consensus       154 ~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~  213 (349)
T 3q7a_A          154 PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVS  213 (349)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred             hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999888        99999999999999999999999887654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.10  E-value=5.6e-10  Score=109.64  Aligned_cols=121  Identities=13%  Similarity=-0.003  Sum_probs=113.5

Q ss_pred             hchHHHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCC
Q 008025          459 NQKQSAEIAKEKGNQA----YKD---KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--QAEADCTKAINLDK  529 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~----~~~---g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~l~p  529 (580)
                      .+|+...+|+.++.++    ...   ++++++++.++++++.+|++..+|+.++.+...+++++  +++++++++++.+|
T Consensus        98 ~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~  177 (306)
T 3dra_A           98 DNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL  177 (306)
T ss_dssp             HCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred             HCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence            4678889999999999    666   79999999999999999999999999999999999998  99999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          530 KNVKAYLRRGTAREMLGY------YKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       530 ~~~~a~~~lg~~~~~~g~------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      .|..+|++++.++..+++      +++++++++++++++|+|..+|..+..+...+
T Consensus       178 ~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~  233 (306)
T 3dra_A          178 KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF  233 (306)
T ss_dssp             TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence            999999999999999988      99999999999999999999999999887543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.10  E-value=2e-09  Score=106.38  Aligned_cols=125  Identities=10%  Similarity=0.018  Sum_probs=115.9

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHHHHH
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQ----------WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAEADC  521 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~----------~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~  521 (580)
                      ...+..+|+...+|+.++.++...++          +++++..+++++..+|++..+|+.+++++..+++  ++++++++
T Consensus        54 ~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~  133 (331)
T 3dss_A           54 SQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELC  133 (331)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHH
T ss_pred             HHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHH
Confidence            44556789999999999999988776          7999999999999999999999999999999994  99999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          522 TKAINLDKKNVKAYLRRGTAREMLGY-YKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       522 ~~al~l~p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +++++++|.|..+|++++.++...+. ++++++++.++++.+|.|..+|.+.+.+...
T Consensus       134 ~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~  191 (331)
T 3dss_A          134 ARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  191 (331)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999 6999999999999999999999999887654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.09  E-value=6.7e-10  Score=91.17  Aligned_cols=82  Identities=16%  Similarity=0.178  Sum_probs=76.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 008025          497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASL  570 (580)
Q Consensus       497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~  570 (580)
                      +...++++|.+++..|+|++|++.|+++++++|+++.+++++|.++..+|++++|+++|+++++++|++      ..++.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999999999999999999999999999      88888


Q ss_pred             HHHHHHhh
Q 008025          571 SADRLRKV  578 (580)
Q Consensus       571 ~l~~l~~~  578 (580)
                      .++.+...
T Consensus        83 ~~~~~~~~   90 (111)
T 2l6j_A           83 RLELAQGA   90 (111)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88776543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.09  E-value=1.6e-09  Score=115.53  Aligned_cols=115  Identities=23%  Similarity=0.206  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      .+..++.+|..+...|++++|+..|+++++.+|+ ..+++.+|.++...|++++|++.|+++++++|++..+++.+|.++
T Consensus       242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  320 (537)
T 3fp2_A          242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY  320 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            4667899999999999999999999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ...|++++|++.|+++++++|++..++..++.+...
T Consensus       321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  356 (537)
T 3fp2_A          321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK  356 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999887643

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.09  E-value=2.2e-09  Score=103.95  Aligned_cols=111  Identities=23%  Similarity=0.178  Sum_probs=100.6

Q ss_pred             hHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCH
Q 008025          461 KQSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNV  532 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~  532 (580)
                      +....+++.+|..+..    .+++++|+..|+++++++  +..+++++|.+|..    .+++++|+++|+++++.+  ++
T Consensus        35 ~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~  110 (273)
T 1ouv_A           35 LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YA  110 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred             CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--Cc
Confidence            5667889999999999    999999999999999885  78999999999999    999999999999999974  89


Q ss_pred             HHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          533 KAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       533 ~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      .+++++|.+|..    .+++++|+++|+++++++  +..++..++.+..
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~  157 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYD  157 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHH
Confidence            999999999999    999999999999999976  6788888887754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.09  E-value=3.9e-10  Score=121.01  Aligned_cols=122  Identities=11%  Similarity=0.068  Sum_probs=114.7

Q ss_pred             chhchHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHH
Q 008025          457 TFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVK  533 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~~  533 (580)
                      ...+|+...+|+.++.++.+.+  +|+++++.++++++++|.+..+|+.++.+..+++ .+++++++++++|+.+|+|..
T Consensus       100 l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~s  179 (567)
T 1dce_A          100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS  179 (567)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCcc
Confidence            3456899999999999999999  7799999999999999999999999999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          534 AYLRRGTAREML--------------GYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       534 a~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|++++.++..+              +++++++++++++++++|++..+|.+++.+...
T Consensus       180 aW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~  238 (567)
T 1dce_A          180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR  238 (567)
T ss_dssp             HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence            999999999986              668999999999999999999999999988653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.09  E-value=2.7e-10  Score=95.22  Aligned_cols=83  Identities=16%  Similarity=0.025  Sum_probs=76.2

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      +|.....++.+|.+++..|+|++|+..|+++++++|++..+++++|.++..+|++++|++.++++++++|+++.......
T Consensus        23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  102 (117)
T 3k9i_A           23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ  102 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred             CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999988765443


Q ss_pred             HHH
Q 008025          540 TAR  542 (580)
Q Consensus       540 ~~~  542 (580)
                      .+.
T Consensus       103 ai~  105 (117)
T 3k9i_A          103 AIL  105 (117)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.09  E-value=9.5e-10  Score=115.44  Aligned_cols=117  Identities=14%  Similarity=0.020  Sum_probs=95.3

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcC
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESG--SFLQAEADCTKAINLD  528 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~l~  528 (580)
                      .++..+..+.++|.+++..|+|++|+.+|++++++.        +..+..+.++|.++...+  +|++|+++|+++++++
T Consensus        89 ~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~  168 (472)
T 4g1t_A           89 AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK  168 (472)
T ss_dssp             CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC
Confidence            345667788889999999999999999999988763        345788888888887664  6889999999999999


Q ss_pred             CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          529 KKNVKAYLRRGTARE---MLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       529 p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      |+++.++..++.++.   ..+++++|++.|+++++++|++..++..++..
T Consensus       169 p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~  218 (472)
T 4g1t_A          169 PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALK  218 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHH
Confidence            999998888888855   45677888889999999999888888777654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.08  E-value=4.8e-10  Score=99.52  Aligned_cols=90  Identities=13%  Similarity=0.013  Sum_probs=81.8

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-HHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-KAYLRR  538 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~-~a~~~l  538 (580)
                      ++.....++++|.++++.|+|++|+..|+++++++|++..+|+.+|.+|..+|++++|+++|+++++++|++. .+...+
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            5677889999999999999999999999999999999999999999999999999999999999999999998 667777


Q ss_pred             HHHHHHcCCHH
Q 008025          539 GTAREMLGYYK  549 (580)
Q Consensus       539 g~~~~~~g~~~  549 (580)
                      +.+...++++.
T Consensus       139 ~~~~~~~~~~~  149 (162)
T 3rkv_A          139 KIVTERRAEKK  149 (162)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            77776655443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.08  E-value=5.4e-10  Score=102.84  Aligned_cols=97  Identities=18%  Similarity=0.116  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~  543 (580)
                      ...++++|.++++.|+|++|+..|+++++++|++..+++++|.+|..+|++++|+++|+++++++|++..++..++.++.
T Consensus        88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A           88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHH-HHHHHHHh
Q 008025          544 MLGYYKEAI-EDFSYALV  560 (580)
Q Consensus       544 ~~g~~~~A~-~~~~~al~  560 (580)
                      .+++++++. ..|.+.+.
T Consensus       168 ~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          168 KLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHHHHHC-----------
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            999988887 44444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.08  E-value=3.2e-10  Score=120.12  Aligned_cols=118  Identities=18%  Similarity=0.117  Sum_probs=108.2

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHcCC
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNAT------YYSNRAAAYLE---SGSFLQAEADCTKAINLDK  529 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~------~~~~la~~~~~---~~~~~~A~~~~~~al~l~p  529 (580)
                      ..+.....++.+|..+...|++++|+..|+++++..|++..      +++.+|.++..   +|++++|++.|+++++++|
T Consensus       367 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~  446 (514)
T 2gw1_A          367 KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP  446 (514)
T ss_dssp             HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred             HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence            34556678999999999999999999999999999988755      99999999999   9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      ++..+++.+|.++..+|++++|.++|+++++++|+++.++..+..+.
T Consensus       447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  493 (514)
T 2gw1_A          447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE  493 (514)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988776554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.07  E-value=1e-09  Score=94.23  Aligned_cols=102  Identities=14%  Similarity=0.054  Sum_probs=93.5

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q 008025          478 KQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLD-K-KNVKAYLRRGTAREMLGYYKEAI  552 (580)
Q Consensus       478 g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~a~~~lg~~~~~~g~~~~A~  552 (580)
                      .....+.+.|++.++.++.+.++.+++|+++.+.+   ++++++..+++.++.+ | ++.+++|++|..++++++|++|+
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            34567788899999989999999999999999998   6779999999999998 7 67899999999999999999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          553 EDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       553 ~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ++++++++++|+|..+......+.+.+
T Consensus        92 ~y~~~lL~ieP~n~QA~~Lk~~ie~~~  118 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKELERLIDKAM  118 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998888764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.07  E-value=5.3e-10  Score=117.24  Aligned_cols=92  Identities=18%  Similarity=0.141  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      ....++++|.++++.|+|++|+.+|+++++++|++..+|+++|.+|+.+++|++|+++|+++++++|++..++.+++.++
T Consensus       316 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~  395 (457)
T 1kt0_A          316 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHH
Q 008025          543 EMLGYYKEAIED  554 (580)
Q Consensus       543 ~~~g~~~~A~~~  554 (580)
                      ..+++++++.+.
T Consensus       396 ~~~~~~~~a~~~  407 (457)
T 1kt0_A          396 KKAKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.06  E-value=6.1e-10  Score=107.58  Aligned_cols=102  Identities=16%  Similarity=0.109  Sum_probs=95.9

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL----  527 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----  527 (580)
                      .+.....+..+|.++...|++++|++.|++++++        +|....++.++|.+|..+|++++|++++++++++    
T Consensus        81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  160 (283)
T 3edt_B           81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATR  160 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            4678889999999999999999999999999998        4667889999999999999999999999999999    


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          528 ----DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       528 ----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                          +|....+++++|.++..+|++++|+++|++++++
T Consensus       161 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          161 LGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                7777889999999999999999999999999987

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.06  E-value=2.1e-10  Score=112.16  Aligned_cols=128  Identities=13%  Similarity=0.005  Sum_probs=104.4

Q ss_pred             HhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025          447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (580)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  526 (580)
                      ..+...+......+|.+...++++|.++++.|+|++|+..|+++++++|++..+++++|.+|..+|++++|+++|+++++
T Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33334444455556788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCH-----HHH--------------------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          527 LDKKNV-----KAY--------------------------LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       527 l~p~~~-----~a~--------------------------~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      ++|++.     ..+                          ..++.  +..|++++|++.++++++++|++......+..+
T Consensus       101 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~--l~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  178 (281)
T 2c2l_A          101 LAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR--LIAAERERELEECQRNHEGHEDDGHIRAQQACI  178 (281)
T ss_dssp             HHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH--HHHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHH
T ss_pred             hCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHHHHHhhhccccchhhhhhHHHHH
Confidence            988652     111                          11222  236889999999999999999987777666554


Q ss_pred             H
Q 008025          576 R  576 (580)
Q Consensus       576 ~  576 (580)
                      .
T Consensus       179 ~  179 (281)
T 2c2l_A          179 E  179 (281)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.06  E-value=1.3e-09  Score=91.65  Aligned_cols=80  Identities=11%  Similarity=0.043  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ..++.+|.++++.|++++|++.|+++++++|++..+|+.+|.++..+|++++|+.+|+++++++|++..++..++.+...
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999887643

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.06  E-value=9.5e-11  Score=117.82  Aligned_cols=103  Identities=15%  Similarity=0.047  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH-H
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR-E  543 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~-~  543 (580)
                      ..++++|.++++.|+|++|+.+|+++++++|++..+|+++|.+|..+|++++|+++|+++++++|++..++.+++.+. .
T Consensus       231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999999999999999999999999999999999999999999999999999999999884 4


Q ss_pred             HcCCHHHHHHHHHHHHhhCCCCHH
Q 008025          544 MLGYYKEAIEDFSYALVLEPTNKR  567 (580)
Q Consensus       544 ~~g~~~~A~~~~~~al~l~p~~~~  567 (580)
                      ..++.+++.+.|++++.+.|+++.
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            567889999999999999998764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.06  E-value=2.4e-09  Score=105.80  Aligned_cols=120  Identities=12%  Similarity=0.072  Sum_probs=111.6

Q ss_pred             chhchHHHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHH
Q 008025          457 TFNQKQSAEIAKEKGNQAYKDK--QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-FLQAEADCTKAINLDKKNVK  533 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g--~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~l~p~~~~  533 (580)
                      +..+|++..+|+.++.++.+.+  +++++++.++++++.+|.+..+|+.++.+....+. +++++++++++|+.+|.|..
T Consensus       101 L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~S  180 (331)
T 3dss_A          101 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS  180 (331)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             HHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHH
Confidence            3456889999999999999998  49999999999999999999999999999999999 69999999999999999999


Q ss_pred             HHHHHHHHHHHc--------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          534 AYLRRGTAREML--------------GYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       534 a~~~lg~~~~~~--------------g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      +|++++.++..+              +.++++++++++++.++|+|..+|.++..+.
T Consensus       181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll  237 (331)
T 3dss_A          181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL  237 (331)
T ss_dssp             HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999988              5699999999999999999999998776654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.05  E-value=4.4e-09  Score=101.79  Aligned_cols=110  Identities=20%  Similarity=0.230  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHH
Q 008025          463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKA  534 (580)
Q Consensus       463 ~~~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~a  534 (580)
                      ....++.+|..+..    .+++++|+..|+++++.  ++..+++++|.+|..    .+++++|+++|+++++++  +..+
T Consensus        73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a  148 (273)
T 1ouv_A           73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDG  148 (273)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred             CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence            67889999999999    99999999999999987  488999999999999    999999999999999976  7889


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          535 YLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       535 ~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ++++|.+|..    .+++++|+++|+++++.  +++.++..++.+...
T Consensus       149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~  194 (273)
T 1ouv_A          149 CTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHH  194 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHc
Confidence            9999999999    99999999999999987  467888888887653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.05  E-value=1.3e-09  Score=110.85  Aligned_cols=96  Identities=18%  Similarity=0.154  Sum_probs=91.5

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      .++.....++++|.++++.|+|++|+++|+++++++|++..+++++|.+|..++++++|+++|+++++++|++..++..+
T Consensus       268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l  347 (370)
T 1ihg_A          268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  347 (370)
T ss_dssp             GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHH
Q 008025          539 GTAREMLGYYKEAIED  554 (580)
Q Consensus       539 g~~~~~~g~~~~A~~~  554 (580)
                      +.++..+++++++.+.
T Consensus       348 ~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          348 LKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999888654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.04  E-value=2.4e-09  Score=91.54  Aligned_cols=87  Identities=15%  Similarity=0.128  Sum_probs=81.1

Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025          492 KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  571 (580)
Q Consensus       492 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  571 (580)
                      ..+|.++..++.+|.+++..|+|++|++.|+++++++|++..+++++|.++..+|++++|+.+|+++++++|++..++..
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhh
Q 008025          572 ADRLRKV  578 (580)
Q Consensus       572 l~~l~~~  578 (580)
                      ++.+...
T Consensus        83 l~~~~~~   89 (137)
T 3q49_B           83 LGQCQLE   89 (137)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9987654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.03  E-value=8.8e-10  Score=90.20  Aligned_cols=86  Identities=22%  Similarity=0.304  Sum_probs=81.7

Q ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q 008025          493 LNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT--NKRASL  570 (580)
Q Consensus       493 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~  570 (580)
                      ++|++...++.+|.++...|++++|++.++++++++|++..+++++|.++..+|++++|+++|+++++++|+  +..++.
T Consensus         1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   80 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA   80 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence            368888999999999999999999999999999999999999999999999999999999999999999999  999999


Q ss_pred             HHHHHHhh
Q 008025          571 SADRLRKV  578 (580)
Q Consensus       571 ~l~~l~~~  578 (580)
                      .++.+...
T Consensus        81 ~l~~~~~~   88 (112)
T 2kck_A           81 AKADALRY   88 (112)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            99987654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.02  E-value=1.3e-09  Score=107.08  Aligned_cols=119  Identities=16%  Similarity=0.197  Sum_probs=105.9

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--  528 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--  528 (580)
                      ..+.....+..+|..+...|++++|+..|++++++.        |....+++++|.+|..+|++++|++++++++++.  
T Consensus        64 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  143 (311)
T 3nf1_A           64 DHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK  143 (311)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            357788899999999999999999999999999883        5567899999999999999999999999999984  


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHh
Q 008025          529 ------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVL--------EPTNKRASLSADRLRK  577 (580)
Q Consensus       529 ------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~l~~l~~  577 (580)
                            |....+++++|.++..+|++++|+++|++++++        .|....++..++.+..
T Consensus       144 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  206 (311)
T 3nf1_A          144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL  206 (311)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHH
T ss_pred             hcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence                  556778999999999999999999999999998        6666777777777654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.02  E-value=1.5e-09  Score=94.45  Aligned_cols=82  Identities=18%  Similarity=0.171  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q 008025          498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-------NVK-----AYLRRGTAREMLGYYKEAIEDFSYALVL----  561 (580)
Q Consensus       498 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-------~~~-----a~~~lg~~~~~~g~~~~A~~~~~~al~l----  561 (580)
                      ...+.++|..++++|+|++|++.|+++|+++|+       +..     +|+++|.++..+|+|++|+.+|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            567899999999999999999999999999999       555     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHhhh
Q 008025          562 ---EPTNKRAS----LSADRLRKVF  579 (580)
Q Consensus       562 ---~p~~~~~~----~~l~~l~~~~  579 (580)
                         +|++..+|    ++++.+...+
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~l  115 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGL  115 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHC
Confidence               99999999    9888876543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.01  E-value=2e-09  Score=100.37  Aligned_cols=112  Identities=13%  Similarity=0.001  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC--CC
Q 008025          462 QSAEIAKEKGNQAYKDK----QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDK--KN  531 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g----~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p--~~  531 (580)
                      .++.+++.+|..+.. +    ++++|+..|+++.+  +.++.++++||.+|..    .+++++|+++|+++++..+  ++
T Consensus        48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~  124 (212)
T 3rjv_A           48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA  124 (212)
T ss_dssp             TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH
T ss_pred             CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch
Confidence            456677778887777 5    78888888888754  4677788888888876    7788888888888887776  34


Q ss_pred             HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          532 VKAYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       532 ~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +.+++++|.+|..    .+++++|+++|++++++ +.++.+...|+.+..
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~  173 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ  173 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence            7788888888877    77788888888888877 666667777777653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.01  E-value=2.1e-09  Score=109.85  Aligned_cols=104  Identities=16%  Similarity=0.069  Sum_probs=74.5

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cC
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAIN-----LD  528 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~-----l~  528 (580)
                      .+..+..+..+|.++...|+|++|+++|++++++.+..      ..+++++|.+|..+|++++|+++++++++     .+
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~  259 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI  259 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            34456677777777777777777777777777764432      24677777777777777777777777777     34


Q ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          529 -KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       529 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                       |....+++++|.++..+|++++|.+++++++++.+
T Consensus       260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence             66677777777777777777777777777777743

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.00  E-value=7.5e-09  Score=101.54  Aligned_cols=117  Identities=11%  Similarity=0.008  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCCH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAI---NLDKKNV  532 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al---~l~p~~~  532 (580)
                      .....++.+|..+...|+|++|+..|+++++..+..      ..+++++|.+|..+|+|++|+++|++++   +..+++.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~  192 (293)
T 2qfc_A          113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE  192 (293)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence            345566779999999999999999999999875543      6789999999999999999999999999   4456543


Q ss_pred             ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhh
Q 008025          533 ----KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT------NKRASLSADRLRKV  578 (580)
Q Consensus       533 ----~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~~~~~~l~~l~~~  578 (580)
                          .+++++|.+|..+|+|++|++++++++++.++      ...++..++.+...
T Consensus       193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~  248 (293)
T 2qfc_A          193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK  248 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHH
T ss_pred             cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence                68999999999999999999999999988643      16677777776543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.00  E-value=5.2e-09  Score=87.16  Aligned_cols=90  Identities=31%  Similarity=0.416  Sum_probs=83.5

Q ss_pred             chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  536 (580)
                      ....+.....++.+|..++..|++++|+..|+++++.+|.+...++.+|.+|..+|++++|++.++++++++|++..++.
T Consensus        36 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  115 (125)
T 1na0_A           36 LELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ  115 (125)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence            33445677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC
Q 008025          537 RRGTAREMLG  546 (580)
Q Consensus       537 ~lg~~~~~~g  546 (580)
                      .++.++..+|
T Consensus       116 ~l~~~~~~~g  125 (125)
T 1na0_A          116 NLGNAKQKQG  125 (125)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcc
Confidence            9999987654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.00  E-value=1.4e-09  Score=88.05  Aligned_cols=85  Identities=11%  Similarity=0.104  Sum_probs=72.6

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYLR  537 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~~  537 (580)
                      +|++...++.+|.+++..|+|++|+..|+++++++|++..+|+++|.+|..+|++++|++.|++++++.|+  +......
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999764  3444444


Q ss_pred             HHHHHHH
Q 008025          538 RGTAREM  544 (580)
Q Consensus       538 lg~~~~~  544 (580)
                      +...+..
T Consensus        83 l~~~l~~   89 (100)
T 3ma5_A           83 LQDAKLK   89 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.99  E-value=1.9e-09  Score=110.76  Aligned_cols=118  Identities=17%  Similarity=0.209  Sum_probs=105.9

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINL------DK  529 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p  529 (580)
                      ++..+..++.+|..++..|+|++|+..|++++++.|++.    .+++.+|.+|..+|++++|+++|++++++      ++
T Consensus        44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  123 (411)
T 4a1s_A           44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL  123 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence            356778889999999999999999999999999999986    58999999999999999999999999998      57


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHh
Q 008025          530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVL------EPTNKRASLSADRLRK  577 (580)
Q Consensus       530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~l~~l~~  577 (580)
                      ....+++++|.+|..+|++++|+++|++++++      .+....++..++.+..
T Consensus       124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  177 (411)
T 4a1s_A          124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH  177 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence            77889999999999999999999999999999      5555667777776653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.99  E-value=1.9e-09  Score=94.45  Aligned_cols=100  Identities=16%  Similarity=0.112  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK------NV  532 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~------~~  532 (580)
                      ..+..+|..++..|++++|++.|++++++.+..      ..+++++|.++..+|++++|++++++++++.+.      ..
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  129 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG  129 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence            456666666666677777777776666654332      455666666666667777777766666665321      13


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      .++.++|.++..+|++++|.+++++++++...
T Consensus       130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          130 RACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            45666666666667777777776666665443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.99  E-value=1.6e-09  Score=106.34  Aligned_cols=115  Identities=10%  Similarity=0.027  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCC
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINL-------DKK  530 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l-------~p~  530 (580)
                      ...++.+|..+...+++++|+.+|++++++.+..      ..+++++|.+|..+|+|++|+++|+++++.       .+.
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF  194 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhH
Confidence            3345568999999999999999999999965432      347999999999999999999999999953       223


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhh
Q 008025          531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLRKV  578 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~~~  578 (580)
                      ...+++++|.+|.++|+|++|++++++++++.++.      ..++..++.+...
T Consensus       195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~  248 (293)
T 3u3w_A          195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK  248 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999987554      6788888877654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.98  E-value=1.7e-09  Score=107.28  Aligned_cols=121  Identities=12%  Similarity=0.024  Sum_probs=113.4

Q ss_pred             hhchHHHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHc
Q 008025          458 FNQKQSAEIAKEKGNQAYKD-K-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL--------QAEADCTKAINL  527 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~-g-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~al~l  527 (580)
                      ..+|+...+|+.++.++.+. + +++++++.++++++.+|++..+|+.++.+..+++.++        +++++++++++.
T Consensus       117 ~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~  196 (349)
T 3q7a_A          117 VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV  196 (349)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh
Confidence            45678899999999999988 7 9999999999999999999999999999999999888        999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          528 DKKNVKAYLRRGTAREMLGY-------YKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       528 ~p~~~~a~~~lg~~~~~~g~-------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +|.|..+|++++.++..+++       +++++++++++++++|+|..+|.++..+...
T Consensus       197 dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~  254 (349)
T 3q7a_A          197 DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH  254 (349)
T ss_dssp             CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            99999999999999999987       8999999999999999999999998877653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.97  E-value=2.1e-09  Score=105.46  Aligned_cols=124  Identities=15%  Similarity=0.085  Sum_probs=107.8

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  525 (580)
                      ......++.....+..+|..++..|++++|+..|++++++        .|....++..+|.+|..+|++++|++++++++
T Consensus        17 q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al   96 (311)
T 3nf1_A           17 QGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL   96 (311)
T ss_dssp             SSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3444567888999999999999999999999999999995        56678899999999999999999999999999


Q ss_pred             Hc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHh
Q 008025          526 NL--------DKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE--------PTNKRASLSADRLRK  577 (580)
Q Consensus       526 ~l--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~l~~l~~  577 (580)
                      ++        +|....+++++|.++..+|++++|+++|++++++.        |....++..++.+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~  164 (311)
T 3nf1_A           97 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ  164 (311)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence            98        35667899999999999999999999999999985        455566666666543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.97  E-value=6.9e-09  Score=85.54  Aligned_cols=90  Identities=14%  Similarity=0.077  Sum_probs=82.1

Q ss_pred             ccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Q 008025          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV  532 (580)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~  532 (580)
                      +.......|.+...++.+|.+++..|++++|+..|+++++.+|++..+++++|.++..+|++++|++.++++++++|++.
T Consensus        27 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~  106 (118)
T 1elw_A           27 YSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP  106 (118)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence            33344445677889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 008025          533 KAYLRRGTAR  542 (580)
Q Consensus       533 ~a~~~lg~~~  542 (580)
                      .++..++.+.
T Consensus       107 ~~~~~l~~~~  116 (118)
T 1elw_A          107 QLKEGLQNME  116 (118)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999988765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.94  E-value=3.5e-09  Score=98.62  Aligned_cols=111  Identities=11%  Similarity=-0.036  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG----SFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      .++.+++.+|..++..+++++|++.|+++++.  .++.+++++|.+|.. +    ++++|+++|+++++  ++++.++++
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~   90 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIV   90 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHH
Confidence            56788999999999999999999999999875  689999999999998 7    99999999999965  679999999


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHh
Q 008025          538 RGTAREM----LGYYKEAIEDFSYALVLEP--TNKRASLSADRLRK  577 (580)
Q Consensus       538 lg~~~~~----~g~~~~A~~~~~~al~l~p--~~~~~~~~l~~l~~  577 (580)
                      +|.+|..    .+++++|+++|+++.+..+  +++.++..|+.+..
T Consensus        91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~  136 (212)
T 3rjv_A           91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA  136 (212)
T ss_dssp             HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence            9999998    8999999999999999988  45899999988764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.94  E-value=6.5e-09  Score=106.11  Aligned_cols=117  Identities=9%  Similarity=-0.019  Sum_probs=90.5

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIK-----LN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-----  528 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~-----~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-----  528 (580)
                      .+..+..+.++|.++...|++++|+.+|+++++     .+ |....+++++|.+|..+|++++|++++++++++.     
T Consensus       220 ~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  299 (383)
T 3ulq_A          220 PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGD  299 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence            445567899999999999999999999999999     45 7788999999999999999999999999999984     


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHh
Q 008025          529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN---KRASLSADRLRK  577 (580)
Q Consensus       529 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~l~~l~~  577 (580)
                      +.....+..+|.++...|+++...+.+.-.-+. ...   ..++..++.+..
T Consensus       300 ~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~  350 (383)
T 3ulq_A          300 VIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH  350 (383)
T ss_dssp             HHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence            444445678999999999994444444433333 322   234455555543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.93  E-value=6.2e-09  Score=83.62  Aligned_cols=77  Identities=16%  Similarity=0.228  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHh
Q 008025          501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVK-AYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS--LSADRLRK  577 (580)
Q Consensus       501 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~--~~l~~l~~  577 (580)
                      .+++|.+++..|++++|++.|+++++++|++.. +++++|.+|..+|++++|+++|+++++++|++..++  ..+..+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~   82 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN   82 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999 999999999999999999999999999999999988  55555443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.93  E-value=3.6e-09  Score=104.70  Aligned_cols=105  Identities=16%  Similarity=0.105  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----  531 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----  531 (580)
                      ..+..+.++|.++.. |+|++|+.+|++++++.+..      ..++.++|.+|..+|+|++|+++|++++++.+++    
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  192 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP  192 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence            346788889999988 99999999999999887653      5788899999999999999999999999986643    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 008025          532 --VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA  568 (580)
Q Consensus       532 --~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  568 (580)
                        ..+++++|.++..+|++++|+.+|++++ ++|+....
T Consensus       193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence              3478888999999999999999999999 99988654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.93  E-value=7.4e-09  Score=90.55  Aligned_cols=115  Identities=20%  Similarity=0.217  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----  531 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----  531 (580)
                      ..+..+..+|..++..|++++|+..|++++++.+.      ...++.++|.+|..+|++++|++++++++++.+..    
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   86 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence            35678999999999999999999999999987432      25689999999999999999999999999986543    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 008025          532 --VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLR  576 (580)
Q Consensus       532 --~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~  576 (580)
                        ..+++++|.++..+|++++|++++++++++.+..      ..++..++.+.
T Consensus        87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  139 (164)
T 3ro3_A           87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY  139 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHH
Confidence              6689999999999999999999999999884322      34455555543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.93  E-value=5.6e-09  Score=102.44  Aligned_cols=101  Identities=18%  Similarity=0.150  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---  531 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---  531 (580)
                      .....+..+|.++...|+|++|+.+|+++++..       +....+++++|.+|.++|+|++|++++++++++.+..   
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~  232 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence            456789999999999999999999999999631       2235689999999999999999999999999986543   


Q ss_pred             ---HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Q 008025          532 ---VKAYLRRGTAREMLG-YYKEAIEDFSYALVLE  562 (580)
Q Consensus       532 ---~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~  562 (580)
                         ..+++++|.+|..+| ++++|+++|++++++.
T Consensus       233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence               789999999999999 5799999999999864

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.91  E-value=1.2e-08  Score=99.99  Aligned_cols=101  Identities=18%  Similarity=0.196  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAI---KLNGNNA----TYYSNRAAAYLESGSFLQAEADCTKAINLDKK----  530 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al---~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----  530 (580)
                      ....+++.+|..+...|+|++|+.+|++++   +..+++.    .+++++|.+|..+|+|++|++++++++++.++    
T Consensus       153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~  232 (293)
T 2qfc_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence            457789999999999999999999999999   4556643    68999999999999999999999999998643    


Q ss_pred             --CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhC
Q 008025          531 --NVKAYLRRGTAREMLGYYKEA-IEDFSYALVLE  562 (580)
Q Consensus       531 --~~~a~~~lg~~~~~~g~~~~A-~~~~~~al~l~  562 (580)
                        ...+++++|.+|..+|++++| ..+|++++++.
T Consensus       233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence              278999999999999999999 88899999774

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.91  E-value=3.9e-09  Score=104.42  Aligned_cols=98  Identities=8%  Similarity=-0.027  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------H
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN------V  532 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~------~  532 (580)
                      ..+.++|.++...|+|++|+.+|++++++.+.      ...++.++|.+|.. |++++|+++|++++++.+..      .
T Consensus        77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~  155 (307)
T 2ifu_A           77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA  155 (307)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence            34445555555555555555555555554221      13445555555544 55555555555555554322      3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                      .++.++|.+|..+|+|++|+++|++++++.|
T Consensus       156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  186 (307)
T 2ifu_A          156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYK  186 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555555433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=8.5e-09  Score=89.09  Aligned_cols=80  Identities=20%  Similarity=0.170  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~  543 (580)
                      ...++.+|.+++..|+|++|+..|+++++++|++..+++++|.+|..++++++|+++|+++++++|++..++..++.+..
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999988877653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.90  E-value=6.7e-09  Score=102.66  Aligned_cols=114  Identities=19%  Similarity=0.225  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL------DKKNV  532 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p~~~  532 (580)
                      .+..++..|..++..|++++|+..|+++++..|++    ..++..+|.+|...|++++|++++++++++      .+...
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            45678889999999999999999999999999998    478899999999999999999999999988      45567


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHH
Q 008025          533 KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR------ASLSADRLR  576 (580)
Q Consensus       533 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~------~~~~l~~l~  576 (580)
                      .+++.+|.++..+|++++|++++++++++.+....      ++..++.+.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  133 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY  133 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            89999999999999999999999999998764422      555555543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.89  E-value=1.4e-08  Score=85.73  Aligned_cols=84  Identities=8%  Similarity=-0.009  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      ...++.+|.+++..|+|++|+..|+++++.+|++   ..+++.+|.+|..+|++++|++.|+++++.+|++..+...+..
T Consensus        39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            4789999999999999999999999999999999   8999999999999999999999999999999999888776665


Q ss_pred             HHHHcCC
Q 008025          541 AREMLGY  547 (580)
Q Consensus       541 ~~~~~g~  547 (580)
                      +....++
T Consensus       119 l~~l~~~  125 (129)
T 2xev_A          119 LQSIRLG  125 (129)
T ss_dssp             HHHHC--
T ss_pred             HHHHHhh
Confidence            5544433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.89  E-value=5e-09  Score=86.92  Aligned_cols=88  Identities=8%  Similarity=0.048  Sum_probs=75.6

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK--NVKAYL  536 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~--~~~a~~  536 (580)
                      .+|.+...++.+|..++..|++++|+..|+++++++|++..+|+++|.+|..+|++++|++.|+++++++|+  +.....
T Consensus        14 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (115)
T 2kat_A           14 QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK   93 (115)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHH
Confidence            346678899999999999999999999999999999999999999999999999999999999999999874  444555


Q ss_pred             HHHHHHHHcC
Q 008025          537 RRGTAREMLG  546 (580)
Q Consensus       537 ~lg~~~~~~g  546 (580)
                      .+...+..++
T Consensus        94 ~l~~~l~~l~  103 (115)
T 2kat_A           94 ELQVFLRRLA  103 (115)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            5554444433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.89  E-value=4.4e-09  Score=96.44  Aligned_cols=98  Identities=10%  Similarity=-0.014  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCC----
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL------NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL---DKK----  530 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l---~p~----  530 (580)
                      ...+..+|..+...|++++|+..|++++++      .+....+++++|.+|..+|++++|++++++++++   .++    
T Consensus        26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  105 (203)
T 3gw4_A           26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA  105 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            444455555555555555555555555542      2223344555555555555555555555555554   221    


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      ...+++++|.++..+|++++|+.++++++++
T Consensus       106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  136 (203)
T 3gw4_A          106 ASANAYEVATVALHFGDLAGARQEYEKSLVY  136 (203)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            1234455555555555555555555555543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.88  E-value=1.1e-08  Score=104.48  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=68.8

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---  531 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---  531 (580)
                      +.....+..+|..++..|++++|+..|++++++.+...      .++.++|.+|..+|++++|++++++++++.+..   
T Consensus       184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  263 (406)
T 3sf4_A          184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR  263 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence            44556666677777777777777777777776644332      266677777777777777777777777665544   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                         ..+++++|.++..+|++++|+++|++++++.+.
T Consensus       264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  299 (406)
T 3sf4_A          264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  299 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence               556667777777777777777777777666443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.88  E-value=1.3e-08  Score=80.75  Aligned_cols=76  Identities=17%  Similarity=0.068  Sum_probs=66.2

Q ss_pred             CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025          494 NGNNATYYSNRAAAYLESGS---FLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS  569 (580)
Q Consensus       494 ~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  569 (580)
                      +|+++..+..+|.+++..++   .++|.+.++++++++|++..+++.+|..+++.|+|++|+.+|+++++.+|.++...
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~~~   80 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLDRV   80 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence            58889999999999987666   78999999999999999999999999999999999999999999999988854433

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.87  E-value=2.1e-08  Score=102.13  Aligned_cols=104  Identities=17%  Similarity=0.024  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCC
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN------NATYYSNRAAAYLESGSFLQAEADCTKAIN-----LDK  529 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----l~p  529 (580)
                      +..+..+..+|.++...|+|++|+++|++++++.+.      ...+++++|.+|..+|++++|+++++++++     .+|
T Consensus       179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~  258 (378)
T 3q15_A          179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD  258 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred             hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence            356788999999999999999999999999997432      256899999999999999999999999999     788


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      ....+++++|.++..+|++++|++++++++++.+.
T Consensus       259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999553

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.86  E-value=1.2e-08  Score=103.97  Aligned_cols=119  Identities=15%  Similarity=0.056  Sum_probs=104.3

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-------NATYYSNRAAAYLESGSFLQAEADCTKAINLDK---  529 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p---  529 (580)
                      .+..+..++.+|.+++..|++++|+.+|++++++.+.       ...+++++|.+|..+|++++|+++|++++++.+   
T Consensus       137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~  216 (378)
T 3q15_A          137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ  216 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence            4677889999999999999999999999999987543       256889999999999999999999999999743   


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHhh
Q 008025          530 ---KNVKAYLRRGTAREMLGYYKEAIEDFSYALV-----LEPTNKRASLSADRLRKV  578 (580)
Q Consensus       530 ---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-----l~p~~~~~~~~l~~l~~~  578 (580)
                         ....+++++|.+|..+|++++|+++|+++++     .+|....++..++.+...
T Consensus       217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  273 (378)
T 3q15_A          217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK  273 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence               1246899999999999999999999999999     778778888888877643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.86  E-value=3e-08  Score=85.43  Aligned_cols=99  Identities=17%  Similarity=0.115  Sum_probs=89.5

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Q 008025          470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM-  544 (580)
Q Consensus       470 ~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-  544 (580)
                      +|..+...+.+++|++.|+++.+.  .++.+++++|.+|..    .+++++|+++|+++.+.  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            999999999999999999999987  789999999999999    89999999999999987  689999999999999 


Q ss_pred             ---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025          545 ---LGYYKEAIEDFSYALVLEPTNKRASLSADR  574 (580)
Q Consensus       545 ---~g~~~~A~~~~~~al~l~p~~~~~~~~l~~  574 (580)
                         .+++++|+++|+++.++  .++.+...|+.
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~  137 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRL--GSEDACGILNN  137 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred             CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence               99999999999999998  46666666554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.84  E-value=8.8e-09  Score=105.19  Aligned_cols=115  Identities=20%  Similarity=0.234  Sum_probs=100.8

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL------DKKN  531 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p~~  531 (580)
                      ..+..++.+|..++..|+|++|+..|++++++.|++    ..+++.+|.+|...|++++|++++++++++      .|..
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            456788999999999999999999999999999998    468999999999999999999999999988      4455


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 008025          532 VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLR  576 (580)
Q Consensus       532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~  576 (580)
                      ..+++++|.++..+|++++|+.++++++++.+..      ..++..++.+.
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  137 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY  137 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence            7799999999999999999999999999997754      33566665554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.84  E-value=7.3e-09  Score=106.41  Aligned_cols=116  Identities=18%  Similarity=0.195  Sum_probs=81.9

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA------TYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---  531 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---  531 (580)
                      +.....+..+|..++..|++++|+.+|++++++.+...      .+++++|.+|..+|++++|+++|++++++.+..   
T Consensus       220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  299 (411)
T 4a1s_A          220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER  299 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence            45566777788888888888888888888877765432      377778888888888888888888877776643   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 008025          532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLR  576 (580)
Q Consensus       532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~  576 (580)
                         ..+++.+|.++..+|++++|+++|++++++.++.      ..++..++.+.
T Consensus       300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  353 (411)
T 4a1s_A          300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH  353 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence               5677777888888888888888888777774432      23455555443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.80  E-value=4.7e-08  Score=104.44  Aligned_cols=125  Identities=10%  Similarity=-0.037  Sum_probs=104.9

Q ss_pred             ccccch-hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025          453 LSTNTF-NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       453 ~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~  530 (580)
                      +..... ..|+....|+.++..+.+.|++++|...|+++++..|.++ .+|.+++.++...|++++|++.|+++++..|.
T Consensus       309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~  388 (530)
T 2ooe_A          309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  388 (530)
T ss_dssp             HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            333443 3577888999999999999999999999999999999985 68999999998899999999999999998888


Q ss_pred             CHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          531 NVKAYLRRGTA-REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       531 ~~~a~~~lg~~-~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ....+...+.+ +...|++++|.+.|+++++.+|+++.++..+..+..
T Consensus       389 ~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~  436 (530)
T 2ooe_A          389 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  436 (530)
T ss_dssp             CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            77777766655 346889999999999999999999888888877654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.78  E-value=2.8e-08  Score=90.96  Aligned_cols=105  Identities=14%  Similarity=0.109  Sum_probs=90.9

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGN----NATYYSNRAAAYLESGSFLQAEADCTKAINLDK--  529 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p--  529 (580)
                      ..+.....+..+|..+...|++++|++.|++++++   .++    ...+++++|.++..+|++++|++++++++++.+  
T Consensus        61 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  140 (203)
T 3gw4_A           61 DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA  140 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence            34567889999999999999999999999999998   443    356799999999999999999999999998743  


Q ss_pred             CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          530 KN----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       530 ~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                      .+    ..++.++|.++..+|++++|.+++++++++..
T Consensus       141 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          141 DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            22    34578999999999999999999999998854

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.77  E-value=3e-08  Score=97.94  Aligned_cols=116  Identities=20%  Similarity=0.203  Sum_probs=88.6

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---  531 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---  531 (580)
                      +.....+..+|..++..|++++|+..|++++++.+..      ..++.++|.+|..+|++++|++++++++++.+..   
T Consensus       180 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  259 (338)
T 3ro2_A          180 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR  259 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence            4556778888888888888888888888888775432      3378888888888888888888888888876654   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 008025          532 ---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN------KRASLSADRLR  576 (580)
Q Consensus       532 ---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------~~~~~~l~~l~  576 (580)
                         ..+++.+|.++..+|++++|++++++++++.+..      ..++..++.+.
T Consensus       260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  313 (338)
T 3ro2_A          260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY  313 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence               6678888888888888888888888888875533      33455555543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.76  E-value=5.4e-08  Score=101.98  Aligned_cols=112  Identities=13%  Similarity=0.083  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKK  530 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~  530 (580)
                      +....+.+..+..+|+|++|+..|+++++.     .+++   ...+++||.+|..+|+|++|+.++++++++     .|+
T Consensus       309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  388 (490)
T 3n71_A          309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN  388 (490)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            344556677788999999999999999986     3444   578999999999999999999999999987     344


Q ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHH
Q 008025          531 N---VKAYLRRGTAREMLGYYKEAIEDFSYALVL-----EPTNKRASLSADRL  575 (580)
Q Consensus       531 ~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~l~~l  575 (580)
                      +   ...++++|.+|..+|+|++|+..|++++++     .|+++.....+..+
T Consensus       389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l  441 (490)
T 3n71_A          389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMR  441 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            4   558999999999999999999999999975     67887766654443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.76  E-value=8.8e-08  Score=77.92  Aligned_cols=76  Identities=18%  Similarity=0.172  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  536 (580)
                      +..++.+|..++++++|.+|+..|+++++..       .....++..+|.+|+++|++++|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4566788888888888888888888888763       234677888888888888888888888888888888887777


Q ss_pred             HHH
Q 008025          537 RRG  539 (580)
Q Consensus       537 ~lg  539 (580)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            776

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.74  E-value=3.6e-08  Score=82.81  Aligned_cols=92  Identities=12%  Similarity=0.173  Sum_probs=80.8

Q ss_pred             cccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025          454 STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (580)
Q Consensus       454 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~  526 (580)
                      .......+.....++.+|..++..|++++|+..|+++++..|++       ..+++++|.+|..+|++++|+++|+++++
T Consensus        28 ~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           28 DKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33334456678899999999999999999999999999998877       89999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcC
Q 008025          527 LDKKNVKAYLRRGTAREMLG  546 (580)
Q Consensus       527 l~p~~~~a~~~lg~~~~~~g  546 (580)
                      ++| +...+..++.++..++
T Consensus       108 ~~~-~~~~~~~l~~~~~~~~  126 (131)
T 1elr_A          108 EHR-TPDVLKKCQQAEKILK  126 (131)
T ss_dssp             HCC-CHHHHHHHHHHHHHHH
T ss_pred             hCC-CHHHHHHHHHHHHHHH
Confidence            999 6888888887776543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.72  E-value=6.5e-08  Score=99.69  Aligned_cols=107  Identities=11%  Similarity=-0.014  Sum_probs=89.8

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC---CHH
Q 008025          470 KGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKK---NVK  533 (580)
Q Consensus       470 ~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~---~~~  533 (580)
                      ......+.|+|++|+..|+++++.     .|++   ...++++|.+|..+|+|++|+.++++++++     .|+   -..
T Consensus       304 ~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~  383 (433)
T 3qww_A          304 EFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS  383 (433)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            344445678999999999999985     4555   467899999999999999999999999987     234   456


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHH
Q 008025          534 AYLRRGTAREMLGYYKEAIEDFSYALVL-----EPTNKRASLSADRLR  576 (580)
Q Consensus       534 a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~l~~l~  576 (580)
                      .++++|.+|..+|+|++|+..|++++++     .|+++........|.
T Consensus       384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          384 MWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence            7999999999999999999999999976     688888877666554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.69  E-value=3.5e-08  Score=94.72  Aligned_cols=114  Identities=13%  Similarity=0.031  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--HHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--VKAYLRRGTA  541 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--~~a~~~lg~~  541 (580)
                      .+....++..+...|+|++|.+.|+..+...|++. .++.+|.++++.++|++|+..|+++++..+..  ..+++++|.+
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            34566788999999999999999999999999988 99999999999999999999999887764221  4589999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHhh
Q 008025          542 REMLGYYKEAIEDFSYALVLE--PT-NKRASLSADRLRKV  578 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~--p~-~~~~~~~l~~l~~~  578 (580)
                      +..+|++++|+.+|++++.-.  |. ..+++..++.+...
T Consensus       181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~  220 (282)
T 4f3v_A          181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRS  220 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHH
Confidence            999999999999999998654  55 55677777776554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.68  E-value=8.7e-08  Score=102.36  Aligned_cols=121  Identities=13%  Similarity=0.043  Sum_probs=107.2

Q ss_pred             ccchhchHHHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 008025          455 TNTFNQKQSAEIAKEKGNQAYK-------DKQWL-------KAISFYTEAIK-LNGNNATYYSNRAAAYLESGSFLQAEA  519 (580)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~-------~g~~~-------~Ai~~~~~al~-~~p~~~~~~~~la~~~~~~~~~~~A~~  519 (580)
                      +.....|.....|+.+|..+.+       .|+++       +|+..|+++++ ..|++...|+.++.++...|++++|.+
T Consensus       263 ~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~  342 (530)
T 2ooe_A          263 QCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHS  342 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHH
Confidence            3344457788999999999986       79987       99999999997 899999999999999999999999999


Q ss_pred             HHHHHHHcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          520 DCTKAINLDKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       520 ~~~~al~l~p~~~-~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      .|+++++++|+++ .+|.+++..+.+.|++++|++.|+++++..|.+...+...+.+
T Consensus       343 ~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~  399 (530)
T 2ooe_A          343 IYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM  399 (530)
T ss_dssp             HHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH
T ss_pred             HHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            9999999999986 6999999999999999999999999999998876666544433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.67  E-value=1.7e-07  Score=76.27  Aligned_cols=81  Identities=15%  Similarity=0.043  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025          498 ATYYSNRAAAYLESGSFLQAEADCTKAINLD-------KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL  570 (580)
Q Consensus       498 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  570 (580)
                      +.-++.+|..++..++|..|+.+|++|++..       +.....+.++|.+++++|++++|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            4567899999999999999999999999973       356789999999999999999999999999999999999988


Q ss_pred             HHHHHHhh
Q 008025          571 SADRLRKV  578 (580)
Q Consensus       571 ~l~~l~~~  578 (580)
                      ++..+++.
T Consensus        85 n~~~~~~~   92 (104)
T 2v5f_A           85 NLKYFEYI   92 (104)
T ss_dssp             HHHHHHHH
T ss_pred             hHHHHHHH
Confidence            88866654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.66  E-value=3.3e-07  Score=75.70  Aligned_cols=104  Identities=13%  Similarity=0.014  Sum_probs=92.0

Q ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-C-CCHHHHHHHHHHHHHcCCHHH
Q 008025          476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ---AEADCTKAINLD-K-KNVKAYLRRGTAREMLGYYKE  550 (580)
Q Consensus       476 ~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~l~-p-~~~~a~~~lg~~~~~~g~~~~  550 (580)
                      .......+.+.|++.+..++....+.+++|+++.+..+...   ++..++..++.+ | ..-+.+|.+|..++++|+|++
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence            34455677888888888888899999999999999887665   999999999987 5 567899999999999999999


Q ss_pred             HHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          551 AIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       551 A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      |+++++..|+.+|+|..+......+.+.+
T Consensus        93 A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i  121 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQNNQAKELERLIDKAM  121 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999998888765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.64  E-value=1.9e-07  Score=96.40  Aligned_cols=113  Identities=12%  Similarity=0.093  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-----DKK  530 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l-----~p~  530 (580)
                      ..........+.++|+|++|++.|+++++.     .|++   ...+.+++.+|..+|+|++|+.++++++++     .|+
T Consensus       287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~  366 (429)
T 3qwp_A          287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS  366 (429)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence            445556666778899999999999999975     3444   578999999999999999999999999987     234


Q ss_pred             C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHH
Q 008025          531 N---VKAYLRRGTAREMLGYYKEAIEDFSYALVL-----EPTNKRASLSADRLR  576 (580)
Q Consensus       531 ~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~p~~~~~~~~l~~l~  576 (580)
                      +   ...++++|.+|..+|++++|+.+|++++++     .|+++.....+..+.
T Consensus       367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~  420 (429)
T 3qwp_A          367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLE  420 (429)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            4   557999999999999999999999999975     678877766555444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.60  E-value=2e-07  Score=97.35  Aligned_cols=103  Identities=16%  Similarity=0.036  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025          464 AEIAKEKGNQAYKD----KQWLKAISFYTEAIKLNGNNATYYSNRAAA-Y--LESGSFLQAEADCTKAINLDKKNVKAYL  536 (580)
Q Consensus       464 ~~~~~~~g~~~~~~----g~~~~Ai~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~l~p~~~~a~~  536 (580)
                      +..++++|..+...    +++++|+..|+++.   |.++.+++++|.+ |  ...+++++|+++|+++.+.  +++.+++
T Consensus       213 a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~  287 (452)
T 3e4b_A          213 AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAEL  287 (452)
T ss_dssp             HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence            33334444444333    34444444444443   4444444444444 2  2344444444444444432  2444444


Q ss_pred             HHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          537 RRGTAREMLG-----YYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       537 ~lg~~~~~~g-----~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      ++|.+|. .|     ++++|+++|+++.   ++++.+...++.+
T Consensus       288 ~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~  327 (452)
T 3e4b_A          288 LLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQI  327 (452)
T ss_dssp             HHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHH
T ss_pred             HHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence            4444444 22     4444444444444   4444444444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.57  E-value=1.9e-07  Score=97.78  Aligned_cols=109  Identities=8%  Similarity=-0.032  Sum_probs=93.6

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL--  527 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l--  527 (580)
                      ..++..+..+.++|..|..+|+|++|+.+|+++++.     .|++   ...+++||.+|..+|+|++|+..|++|+++  
T Consensus       345 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~  424 (490)
T 3n71_A          345 DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL  424 (490)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            467888999999999999999999999999999975     3444   567999999999999999999999999987  


Q ss_pred             ---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          528 ---DKKN---VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       528 ---~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                         .|++   .+...+++.++.++++|++|+..|+++.+..-++.
T Consensus       425 ~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~  469 (490)
T 3n71_A          425 VTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQ  469 (490)
T ss_dssp             HHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence               4555   45678899999999999999999999977543333

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.54  E-value=3e-07  Score=72.83  Aligned_cols=72  Identities=17%  Similarity=0.066  Sum_probs=66.6

Q ss_pred             chHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 008025          460 QKQSAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN  531 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~  531 (580)
                      +|+++..+..+|..++..++   .++|...++++++++|++..+++.+|..+++.|+|++|+.+++++++.+|..
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            35678899999999986665   7999999999999999999999999999999999999999999999999983

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.53  E-value=4.4e-07  Score=91.84  Aligned_cols=101  Identities=12%  Similarity=-0.027  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--------GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-----  530 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-----  530 (580)
                      ...+..+|..++..|++++|++.|++++++.        |....++.++|.+|...|++++|++++++++++.+.     
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  172 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  172 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence            3456778888888888888888888888764        334567778888888888888888888888888764     


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      ...++.++|.++...|++++|..++++++++.+.
T Consensus       173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~  206 (373)
T 1hz4_A          173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN  206 (373)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            3467788888888888888888888888888655

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.52  E-value=5.3e-07  Score=95.18  Aligned_cols=109  Identities=17%  Similarity=0.106  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          463 SAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g---~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      ...+++.+|..+...|   ++++|++.|+++++.  .++.+++++|.+|..    .+++++|+++|+++++.  +++.++
T Consensus       327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~  402 (490)
T 2xm6_A          327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQ  402 (490)
T ss_dssp             CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHH
Confidence            4567788888888755   889999999999887  678899999999998    88999999999999886  468899


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHH
Q 008025          536 LRRGTAREM----LGYYKEAIEDFSYALVLEPT---NKRASLSADRL  575 (580)
Q Consensus       536 ~~lg~~~~~----~g~~~~A~~~~~~al~l~p~---~~~~~~~l~~l  575 (580)
                      +++|.+|..    .+++++|.++|+++++.+|+   ++.+...++.+
T Consensus       403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~  449 (490)
T 2xm6_A          403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKL  449 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence            999999998    88999999999999999854   77777766543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.50  E-value=1.2e-06  Score=88.52  Aligned_cols=101  Identities=9%  Similarity=-0.035  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------C
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKL---NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINLD--------K  529 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~---~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--------p  529 (580)
                      ...+..+|..++..|++++|+..|++++++   .++.   ..+++++|.++..+|++++|++++++++++.        |
T Consensus        53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  132 (373)
T 1hz4_A           53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP  132 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence            455667777777777777777777777764   2322   4556777777777777777777777777764        2


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 008025          530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~  564 (580)
                      ....++.++|.++..+|++++|.+++++++++.+.
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          133 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            33456677777777777777777777777777664

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.49  E-value=7.4e-07  Score=93.08  Aligned_cols=108  Identities=13%  Similarity=0.007  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          465 EIAKEKGNQAYKDK---QWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----GSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       465 ~~~~~~g~~~~~~g---~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      .+++.+|..+.+.|   ++++|++.|+++.+..+.+...++++|.+|...    +++++|+++|+++.   |+++.++++
T Consensus       177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~  253 (452)
T 3e4b_A          177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS  253 (452)
T ss_dssp             THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred             HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence            38899999999999   999999999999999999999999999999766    79999999999998   899999999


Q ss_pred             HHHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          538 RGTA-R--EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       538 lg~~-~--~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +|.+ +  ...+++++|+++|+++.+.  +++.++..++.+..
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence            9999 4  5789999999999999965  48999999998764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.48  E-value=2.1e-06  Score=90.60  Aligned_cols=111  Identities=14%  Similarity=-0.022  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHH
Q 008025          462 QSAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVK  533 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~  533 (580)
                      .++.+++.+|..+..    .+++++|++.|+++.+.  .++.++++||.+|..    .+++++|+++|+++.+.  +++.
T Consensus        73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~  148 (490)
T 2xm6_A           73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS  148 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence            467889999999999    99999999999999875  578999999999999    89999999999999875  5899


Q ss_pred             HHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          534 AYLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       534 a~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +++++|.+|..    .+++++|+++|+++++.  +++.++..++.+...
T Consensus       149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~  195 (490)
T 2xm6_A          149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSR  195 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhc
Confidence            99999999998    88999999999999986  589999999887643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.47  E-value=4.7e-07  Score=77.67  Aligned_cols=81  Identities=14%  Similarity=0.015  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDK---QWLKAISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g---~~~~Ai~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  536 (580)
                      ...++.+++|.++.+.+   ++++++..+++.++.+ | ++.+++|+||..|+++++|++|.++++++++++|+|.++..
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            45678899999999987   7889999999999998 7 56899999999999999999999999999999999999887


Q ss_pred             HHHHHH
Q 008025          537 RRGTAR  542 (580)
Q Consensus       537 ~lg~~~  542 (580)
                      .+-.+-
T Consensus       110 Lk~~ie  115 (152)
T 1pc2_A          110 LERLID  115 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.44  E-value=1e-06  Score=83.56  Aligned_cols=104  Identities=13%  Similarity=0.069  Sum_probs=88.7

Q ss_pred             hHHHHHHHHHHHHHHH-----cc------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHH
Q 008025          461 KQSAEIAKEKGNQAYK-----DK------QWLKAISFYTEAIKLNGN--NATYYSNRAAAYLES-----GSFLQAEADCT  522 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~-----~g------~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~-----~~~~~A~~~~~  522 (580)
                      +++++.++..|.....     .+      ...+|...++++++++|+  +..+|..+|..|.+.     |+.++|.++|+
T Consensus       149 ~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe  228 (301)
T 3u64_A          149 RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE  228 (301)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence            4556666655555432     23      347899999999999999  677999999999996     99999999999


Q ss_pred             HHHHcCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC
Q 008025          523 KAINLDKKN-VKAYLRRGTAREM-LGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       523 ~al~l~p~~-~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~  564 (580)
                      ++++++|+. ...++.+|..+.. +++++++.++++++++..|.
T Consensus       229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            999999975 9999999999987 59999999999999998776

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.43  E-value=1.7e-06  Score=74.31  Aligned_cols=93  Identities=19%  Similarity=0.055  Sum_probs=83.4

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 008025          477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM----LGYYKEAI  552 (580)
Q Consensus       477 ~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~----~g~~~~A~  552 (580)
                      .+++++|++.|+++.+.....  +.  +|.+|...+.+++|+++|+++.+.  +++.+++++|.+|..    .+++++|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            367899999999999987544  44  999999999999999999999997  789999999999999    89999999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          553 EDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       553 ~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++|+++.+.  .++.+...|+.+..
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~  104 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQY  104 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHH
Confidence            999999987  78999999998764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.38  E-value=2.4e-06  Score=84.57  Aligned_cols=118  Identities=19%  Similarity=0.162  Sum_probs=82.7

Q ss_pred             hhhccccccchhchHHHHHHHHHHHHHHHccCH-------HHHHH-HHH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 008025          448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQW-------LKAIS-FYT--EAIKLNGNNATYYSNRAAAYLESGSFLQA  517 (580)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~-------~~Ai~-~~~--~al~~~p~~~~~~~~la~~~~~~~~~~~A  517 (580)
                      .+...+.+.+..+|+.+.++-.++.++.....+       .+++. .+.  .++..+|.++.++..++..+...|++++|
T Consensus       217 ~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A  296 (372)
T 3ly7_A          217 RASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDES  296 (372)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHH
Confidence            334444555555666666666555555321111       01111 111  12244566777777777777778999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          518 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       518 ~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                      ++.++++++++| +..+|..+|.++...|++++|++.|++|+.++|..+
T Consensus       297 ~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          297 YQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            999999999997 477889999999999999999999999999999875

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.32  E-value=4.6e-06  Score=81.07  Aligned_cols=96  Identities=9%  Similarity=-0.026  Sum_probs=55.7

Q ss_pred             HHHHHHcc--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------CCCCHHHHH
Q 008025          471 GNQAYKDK--QWLKAISFYTEAIKLNGN--NATYYSNRAAAYLESGSFLQAEADCTKAINL----------DKKNVKAYL  536 (580)
Q Consensus       471 g~~~~~~g--~~~~Ai~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~l----------~p~~~~a~~  536 (580)
                      +.+.+..|  ++++|...|+++.+..|+  ....+++   +++++|++++|.+.+++++++          +|+++.++.
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La  259 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA  259 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence            33344444  666666666666555554  2223333   566666666666666655554          356666666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 008025          537 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLS  571 (580)
Q Consensus       537 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  571 (580)
                      |+..+...+|+  +|.++++++.+.+|+++.+...
T Consensus       260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence            66666666665  6666666666666666655543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.22  E-value=1.5e-05  Score=77.55  Aligned_cols=111  Identities=8%  Similarity=-0.118  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHcC--CHHHHHHHHHHHHHcCCC--C
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN----NATYYSNR--AAAYLESG--SFLQAEADCTKAINLDKK--N  531 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~----~~~~~~~l--a~~~~~~~--~~~~A~~~~~~al~l~p~--~  531 (580)
                      ...+.+...+.+++++|+.+.|.+.+++..+.+|+    +-.....+  +++.+..|  ++++|+..|+++.+..|+  .
T Consensus       134 ~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~  213 (310)
T 3mv2_B          134 GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKT  213 (310)
T ss_dssp             THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCccc
Confidence            67888889999999999999999999999999983    12333444  55566667  999999999999988887  3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHH
Q 008025          532 VKAYLRRGTAREMLGYYKEAIEDFSYALVL----------EPTNKRASLSADRL  575 (580)
Q Consensus       532 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l----------~p~~~~~~~~l~~l  575 (580)
                      ...+++   ++..+|++++|++.+++.+++          +|+++.++.++..+
T Consensus       214 ~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l  264 (310)
T 3mv2_B          214 QLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL  264 (310)
T ss_dssp             HHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred             HHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence            445555   899999999999999988887          48899999776544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.18  E-value=1.9e-05  Score=65.25  Aligned_cols=83  Identities=13%  Similarity=-0.007  Sum_probs=72.0

Q ss_pred             CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025          497 NATYYSNRAAAYLESGSF---LQAEADCTKAINLDK-KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  572 (580)
Q Consensus       497 ~~~~~~~la~~~~~~~~~---~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l  572 (580)
                      .....+++|+++.+..+.   .+++..++..++.+| ...+.+|.+|+.++++|+|++|.++.+.+++.+|+|..+....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            578889999999988764   578999999998888 4578899999999999999999999999999999999999988


Q ss_pred             HHHHhhh
Q 008025          573 DRLRKVF  579 (580)
Q Consensus       573 ~~l~~~~  579 (580)
                      ..|.+.+
T Consensus       119 ~~Ie~ki  125 (134)
T 3o48_A          119 SMVEDKI  125 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887765

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.18  E-value=4.4e-05  Score=63.91  Aligned_cols=85  Identities=13%  Similarity=-0.012  Sum_probs=75.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025          495 GNNATYYSNRAAAYLESGSF---LQAEADCTKAINLDK-KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL  570 (580)
Q Consensus       495 p~~~~~~~~la~~~~~~~~~---~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  570 (580)
                      .-.....+++|+++.+..+.   .+++..++..++.+| +.-+.+|.+|..++++|+|++|.++.+.+|+.+|+|..+..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45678999999999998864   579999999999888 46778999999999999999999999999999999999999


Q ss_pred             HHHHHHhhh
Q 008025          571 SADRLRKVF  579 (580)
Q Consensus       571 ~l~~l~~~~  579 (580)
                      ....+++.+
T Consensus       116 Lk~~Ie~~i  124 (144)
T 1y8m_A          116 LKSMVEDKI  124 (144)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988887765

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.10  E-value=2.4e-05  Score=89.14  Aligned_cols=78  Identities=18%  Similarity=0.132  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------------CCHHHHHHHHHHHHHcCCHHHHHHH
Q 008025          500 YYSNRAAAYLESGSFLQAEADCTKAINLDK-------------------------KNVKAYLRRGTAREMLGYYKEAIED  554 (580)
Q Consensus       500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p-------------------------~~~~a~~~lg~~~~~~g~~~~A~~~  554 (580)
                      .|..++.+|.++|++++|++.++++...+.                         .+++-+..++..|...|.|++|+..
T Consensus      1223 ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~L 1302 (1630)
T 1xi4_A         1223 NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM 1302 (1630)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            344555555555556666665555533221                         1222333455556677777777777


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHh
Q 008025          555 FSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       555 ~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +++++.+++.+...+..++.+..
T Consensus      1303 lE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A         1303 LEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred             HHHHhccChhHhHHHHHHHHHHH
Confidence            77777777777777766666543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.08  E-value=3.1e-05  Score=76.68  Aligned_cols=115  Identities=10%  Similarity=0.004  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------HHHH-HHHH--HHHHcCC
Q 008025          463 SAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSF-------LQAE-ADCT--KAINLDK  529 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~-------~~A~-~~~~--~al~l~p  529 (580)
                      .+..++.+|..++..++   +.+|+.+|+++++++|+++.+|..++.+|.....+       .+++ ..++  .++.++|
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~  274 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN  274 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCC
Confidence            34556778888877544   58999999999999999999999999999643211       1111 1122  2346689


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .++.+|..++..+...|++++|++.++++++++|+ ..++..++.+...
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~  322 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM  322 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence            99999999999999999999999999999999975 6777777776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.04  E-value=3.3e-05  Score=87.98  Aligned_cols=93  Identities=14%  Similarity=0.073  Sum_probs=74.8

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----------
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK----------  530 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~----------  530 (580)
                      .+...+|+++|.++.+.|++++|++.|.++     ++++.|.+++.++.++|+|++|+++|..+.+..++          
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Lafa 1176 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFA 1176 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHH
Confidence            356789999999999999999999999886     88899999999999999999999999887766532          


Q ss_pred             -----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025          531 -----------------NVKAYLRRGTAREMLGYYKEAIEDFSYA  558 (580)
Q Consensus       531 -----------------~~~a~~~lg~~~~~~g~~~~A~~~~~~a  558 (580)
                                       +...++++|..++..|+|++|..+|+++
T Consensus      1177 YAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A         1177 LAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred             HHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence                             2234556677777777777776666664

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.93  E-value=4.9e-05  Score=62.70  Aligned_cols=81  Identities=11%  Similarity=-0.026  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLK---AISFYTEAIKLN-G-NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~---Ai~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  536 (580)
                      ...+..+++|..+.+..+..+   +|..++..++.+ | ..-+++|.||..++++|+|++|.++++..|+.+|+|.++..
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            456778999999998877666   999999998877 5 56789999999999999999999999999999999999887


Q ss_pred             HHHHHH
Q 008025          537 RRGTAR  542 (580)
Q Consensus       537 ~lg~~~  542 (580)
                      .+..+-
T Consensus       113 Lk~~i~  118 (126)
T 1nzn_A          113 LERLID  118 (126)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            765544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.89  E-value=0.00011  Score=74.64  Aligned_cols=105  Identities=15%  Similarity=0.059  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      ..|..++.++.+.|+|++|++.|.++     +++..|.....++...|+++.|..+..+ |..+|++   ...+...|.+
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek  219 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQD  219 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHH
Confidence            46788999999999999999999999     5789999999999999999999877765 3355544   4467888999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          545 LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       545 ~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .|++++|+..+++++.+++.....+..++.+..+
T Consensus       220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          220 RGYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999887654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.88  E-value=4.1e-05  Score=78.86  Aligned_cols=89  Identities=11%  Similarity=0.044  Sum_probs=73.3

Q ss_pred             chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 008025          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL-  527 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l-  527 (580)
                      -..++..+..+.++|..|..+|+|++|+.+|+++++.     .|++   ...+++||.+|..+|++++|+..|++|+++ 
T Consensus       322 g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          322 PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            3467888999999999999999999999999999975     3444   567999999999999999999999999987 


Q ss_pred             ----CCCCHH---HHHHHHHHHHHc
Q 008025          528 ----DKKNVK---AYLRRGTAREML  545 (580)
Q Consensus       528 ----~p~~~~---a~~~lg~~~~~~  545 (580)
                          .|+++.   .+.+++.+...+
T Consensus       402 ~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          402 RVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCChHHHHHHHHHHHHHHHH
Confidence                455544   456666665443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.86  E-value=0.00011  Score=63.26  Aligned_cols=111  Identities=14%  Similarity=0.087  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---C---
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------ATYYSNRAAAYLESGSFLQAEADCTKAINLDK---K---  530 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p---~---  530 (580)
                      .++.....++..+.|+.|+-....++.+..++         ...+..+|.+++..++|..|...|+++|++..   +   
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45667777888888888888888877764332         24778888888888888888888888876621   1   


Q ss_pred             -------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          531 -------------------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       531 -------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                                         ..+..|..+.||.+++++++|+..++.. -.....+.+...|+++.+
T Consensus       102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy~  166 (167)
T 3ffl_A          102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI-PSRQRTPKINMLLANLYK  166 (167)
T ss_dssp             ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHCC
T ss_pred             ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC-CchhcCHHHHHHHHHHhc
Confidence                               1267899999999999999999987742 223345667777776653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.83  E-value=6.7e-05  Score=77.16  Aligned_cols=101  Identities=8%  Similarity=-0.043  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG------NNATYYSNRAAAYLESGSFLQAEADCTKAINL------DKK  530 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p~  530 (580)
                      .......++..+...|++++|+..|++++...+      .....+.++|.+|..+|+|++|++.+++++..      .+.
T Consensus        94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~  173 (434)
T 4b4t_Q           94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS  173 (434)
T ss_dssp             HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence            344566788888899999999999999998632      23678999999999999999999999999876      334


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                      ...++..++.+|..+|++++|+..+++++.+.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            467899999999999999999999999998754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.82  E-value=6.6e-05  Score=77.21  Aligned_cols=77  Identities=14%  Similarity=0.104  Sum_probs=67.1

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-----NGNN---ATYYSNRAAAYLESGSFLQAEADCTKAINL--  527 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~l--  527 (580)
                      ..++..+..+.++|..|..+|+|++|+.+|+++++.     .|++   ...+++||.+|..+|+|++|+..|++|+++  
T Consensus       334 ~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~  413 (433)
T 3qww_A          334 DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME  413 (433)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            457888999999999999999999999999999975     3444   567999999999999999999999999987  


Q ss_pred             ---CCCCHHH
Q 008025          528 ---DKKNVKA  534 (580)
Q Consensus       528 ---~p~~~~a  534 (580)
                         .|+++..
T Consensus       414 ~~lG~~Hp~~  423 (433)
T 3qww_A          414 VAHGKDHPYI  423 (433)
T ss_dssp             HHTCTTCHHH
T ss_pred             HHcCCCChHH
Confidence               4666543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.74  E-value=0.0002  Score=67.97  Aligned_cols=115  Identities=8%  Similarity=-0.051  Sum_probs=85.1

Q ss_pred             hHHHHHHHHHHHHHH------HccCHHHHHHH-----HHHHHH-hCCCCHHHHHHHHHHHHH---c--C------CHHHH
Q 008025          461 KQSAEIAKEKGNQAY------KDKQWLKAISF-----YTEAIK-LNGNNATYYSNRAAAYLE---S--G------SFLQA  517 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~------~~g~~~~Ai~~-----~~~al~-~~p~~~~~~~~la~~~~~---~--~------~~~~A  517 (580)
                      +..+..++.+|..|-      +...+.++++.     +.+++. .+|++.+.++..|.....   .  +      ...+|
T Consensus       103 ~~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A  182 (301)
T 3u64_A          103 YSRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAA  182 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHH
Confidence            344555555555442      22445545443     344443 478888888888877743   2  2      26789


Q ss_pred             HHHHHHHHHcCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q 008025          518 EADCTKAINLDKK--NVKAYLRRGTAREML-----GYYKEAIEDFSYALVLEPTN-KRASLSADRL  575 (580)
Q Consensus       518 ~~~~~~al~l~p~--~~~a~~~lg~~~~~~-----g~~~~A~~~~~~al~l~p~~-~~~~~~l~~l  575 (580)
                      ...+++++++||+  +..+|..+|..|.+.     |+.++|+++|+++++++|+. .+.+..++..
T Consensus       183 ~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~  248 (301)
T 3u64_A          183 VMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADA  248 (301)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            9999999999999  566999999999995     99999999999999999975 8888877764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.73  E-value=0.00015  Score=74.59  Aligned_cols=100  Identities=13%  Similarity=-0.015  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLESGSFLQAEADCTKAINLDK------  529 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p------  529 (580)
                      ....++.++|..|.+.|+|++|++.|.+++...+..      ..++..++.++...+++++|++.+++++...+      
T Consensus        53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  132 (434)
T 4b4t_Q           53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVF  132 (434)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCS
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccH
Confidence            445678999999999999999999999999876553      24567788888889999999999999988733      


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       530 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      .....+.++|.+|...|+|++|...+++++..
T Consensus       133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~  164 (434)
T 4b4t_Q          133 LKHSLSIKLATLHYQKKQYKDSLALINDLLRE  164 (434)
T ss_dssp             SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence            34678999999999999999999999999876

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.55  E-value=4.6e-05  Score=77.48  Aligned_cols=87  Identities=15%  Similarity=0.173  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      ..|..+|..++..|+|++|+.+|.++        ..|..++.|+.++|+|++|++.++++     +++.+|.....++..
T Consensus       123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~  189 (449)
T 1b89_A          123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVD  189 (449)
T ss_dssp             --------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence            48999999999999999999999987        58899999999999999999999999     578999999999999


Q ss_pred             cCCHHHHHHHHHHHHhhCCCC
Q 008025          545 LGYYKEAIEDFSYALVLEPTN  565 (580)
Q Consensus       545 ~g~~~~A~~~~~~al~l~p~~  565 (580)
                      .|+++.|..+..+ +..+|++
T Consensus       190 ~~ef~lA~~~~l~-L~~~ad~  209 (449)
T 1b89_A          190 GKEFRLAQMCGLH-IVVHADE  209 (449)
T ss_dssp             TTCHHHHHHTTTT-TTTCHHH
T ss_pred             cCcHHHHHHHHHH-HHhCHhh
Confidence            9999999888775 4455544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.45  E-value=0.0012  Score=54.40  Aligned_cols=81  Identities=7%  Similarity=0.014  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      ..+..++.|..+.+..+   ...+|..++..++.+|. .-++++.||..++++|+|++|.++++.+++.+|+|.++....
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            34667778888877654   46799999999998884 578999999999999999999999999999999999988776


Q ss_pred             HHHHH
Q 008025          539 GTARE  543 (580)
Q Consensus       539 g~~~~  543 (580)
                      ..+-.
T Consensus       119 ~~Ie~  123 (134)
T 3o48_A          119 SMVED  123 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.42  E-value=0.0016  Score=54.43  Aligned_cols=80  Identities=8%  Similarity=0.003  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQ---WLKAISFYTEAIKLNGN-NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~---~~~Ai~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      ..+..++.|..+.+..+   ..++|..++..++..|. .-+++|.||..++++|+|++|.++++..|+.+|+|.++....
T Consensus        38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk  117 (144)
T 1y8m_A           38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  117 (144)
T ss_dssp             CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            45677888888887665   45799999999998884 578999999999999999999999999999999999987766


Q ss_pred             HHHH
Q 008025          539 GTAR  542 (580)
Q Consensus       539 g~~~  542 (580)
                      ..+-
T Consensus       118 ~~Ie  121 (144)
T 1y8m_A          118 SMVE  121 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.36  E-value=0.002  Score=54.25  Aligned_cols=111  Identities=14%  Similarity=-0.125  Sum_probs=91.9

Q ss_pred             hchHHHHHHHHHHHHHHHccCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQW------LKAISFYTEAIKLNGNN--------ATYYSNRAAAYLESGSFLQAEADCTKA  524 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~------~~Ai~~~~~al~~~p~~--------~~~~~~la~~~~~~~~~~~A~~~~~~a  524 (580)
                      ..|++.+.|.......-+.|+.      ++-++.|++++..-|-.        ...|...|.. ..++|.++|.+.|+.+
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA   86 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence            3467778888888888888888      88899999999876642        2344555533 5779999999999999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025          525 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL  570 (580)
Q Consensus       525 l~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  570 (580)
                      ++++...++.|...|.--.++|+.+.|.+.+.+++.+.|.....+.
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence            9999899999999999999999999999999999999998876554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.28  E-value=0.00097  Score=72.55  Aligned_cols=116  Identities=12%  Similarity=-0.054  Sum_probs=60.6

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----------CC-----------CHHHHHHHHHHHHHcCCHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-----------GN-----------NATYYSNRAAAYLESGSFLQ  516 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-----------p~-----------~~~~~~~la~~~~~~~~~~~  516 (580)
                      ..|.....|+..+......|++++|.+.|++++..-           |.           ...+|...+......++.+.
T Consensus       373 ~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~  452 (679)
T 4e6h_A          373 CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAA  452 (679)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHH
Confidence            344444455555555555555555665555555431           21           22345555555555555555


Q ss_pred             HHHHHHHHHHc-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025          517 AEADCTKAINL-DKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEPTNKRASLSADR  574 (580)
Q Consensus       517 A~~~~~~al~l-~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l~~  574 (580)
                      |.+.|.+|++. .+.....|...+.+-.+.+ +++.|.+.|+++++..|+++..+..+..
T Consensus       453 AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~  512 (679)
T 4e6h_A          453 SRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            66666665555 3333444544444444443 3566666666666666666665544443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.14  E-value=0.0027  Score=68.99  Aligned_cols=115  Identities=6%  Similarity=-0.153  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL-NGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLRRGT  540 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~-~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~lg~  540 (580)
                      ....|...++...+.++.+.|...|.+|++. .+.....|...+....+.+ +++.|.+.|+++++..|+++..|...+.
T Consensus       433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~  512 (679)
T 4e6h_A          433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLD  512 (679)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            4557888888888999999999999999988 4455677777777776665 4899999999999999999999988898


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHh
Q 008025          541 AREMLGYYKEAIEDFSYALVLEPT---NKRASLSADRLRK  577 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~l~~l~~  577 (580)
                      .....|+.+.|...|+++++..|+   ....|......+.
T Consensus       513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~  552 (679)
T 4e6h_A          513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES  552 (679)
T ss_dssp             HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            888999999999999999999883   4566666555543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.90  E-value=0.008  Score=51.75  Aligned_cols=80  Identities=16%  Similarity=0.095  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C----------------------CHHHHHHHHHHHHHcCCHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG---N----------------------NATYYSNRAAAYLESGSFLQ  516 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p---~----------------------~~~~~~~la~~~~~~~~~~~  516 (580)
                      ...+.+..+|+.+|.+++|..|...|+++|++..   .                      +.+..|.++.||.+++++++
T Consensus        61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence            4678889999999999999999999999986521   1                      12688999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          517 AEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       517 A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      |+..++.. -.....++....||.+|
T Consensus       141 Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          141 AIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHHHhcC-CchhcCHHHHHHHHHHh
Confidence            99988653 23345677777777665

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=96.44  E-value=0.042  Score=55.44  Aligned_cols=62  Identities=11%  Similarity=-0.022  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV  560 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  560 (580)
                      .+...++.++...|++.+++..+++++..+|-+-.+|..+-.+|+..|+..+|++.|+++-+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            35567788889999999999999999999999999999999999999999999999988755

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.34  E-value=0.031  Score=58.47  Aligned_cols=114  Identities=9%  Similarity=-0.092  Sum_probs=86.8

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-------------------------------
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA-------------------------------  507 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~-------------------------------  507 (580)
                      ..|.....|+..+..+.+.|+.++|.+.|++++.. |.+...|...+..                               
T Consensus       208 ~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  286 (493)
T 2uy1_A          208 SFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELD  286 (493)
T ss_dssp             HTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccH
Confidence            34566788999999999999999999999999999 9875544433322                               


Q ss_pred             ---------HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 008025          508 ---------YLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YYKEAIEDFSYALVLEPTNKRASLSADR  574 (580)
Q Consensus       508 ---------~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~p~~~~~~~~l~~  574 (580)
                               ..+.++.+.|.+.|+++ +..+.....|...+..-...+ +++.|.+.|+++++..|+++..+..+..
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid  362 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFL  362 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence                     22356788899999999 443345667777676666666 6999999999999999998877655443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.32  E-value=0.072  Score=45.56  Aligned_cols=101  Identities=12%  Similarity=0.081  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cC--------------
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN--LD--------------  528 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--l~--------------  528 (580)
                      +--..++..++-.|+|..++-.+.+     -+...+.+..+.||.++++|..|+.++++.++  .+              
T Consensus        34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv  108 (242)
T 3kae_A           34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV  108 (242)
T ss_dssp             CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred             HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence            4445678889999999999887654     36678888899999999999999999999993  32              


Q ss_pred             -CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025          529 -KKNVKA-YLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASL  570 (580)
Q Consensus       529 -p~~~~a-~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  570 (580)
                       |.+-+. +..+|.++.+.|+-+||+.+|.......|-.+.+.+
T Consensus       109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn  152 (242)
T 3kae_A          109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN  152 (242)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence             334444 455699999999999999999999988887665553

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.87  E-value=0.1  Score=48.81  Aligned_cols=94  Identities=19%  Similarity=0.140  Sum_probs=76.4

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-----------------
Q 008025          472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKA-----------------  534 (580)
Q Consensus       472 ~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a-----------------  534 (580)
                      ..+++.|+.++|++.....++.+|.|......+-..++-.|+++.|.+.++-+.+++|+....                 
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~v   84 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   84 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999999999999999999999865332                 


Q ss_pred             ------------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008025          535 ------------------YLRRGTAREMLGYYKEAIEDFSYALVLEPTN  565 (580)
Q Consensus       535 ------------------~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  565 (580)
                                        ....+......|+.++|.+.-.++++..|..
T Consensus        85 faG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~  133 (273)
T 1zbp_A           85 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK  133 (273)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred             HcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence                              2223444556688888888888888877653

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.44  E-value=0.077  Score=55.05  Aligned_cols=81  Identities=20%  Similarity=0.088  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      ..+..+|........+..|..+|.+|..+.|++...|+.||.++...++.-+|+-+|.+++....-.+.+..|+...+.+
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            45677999999999999999999999999999999999999999999999999999999999888899999999888765


Q ss_pred             c
Q 008025          545 L  545 (580)
Q Consensus       545 ~  545 (580)
                      .
T Consensus       233 ~  233 (497)
T 1ya0_A          233 A  233 (497)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.19  E-value=0.26  Score=51.35  Aligned_cols=108  Identities=10%  Similarity=-0.132  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      ....|...+....+.++.+.|...|.++ +..+.....|...+...+..+ +++.|.+.|+++++..|+.+..|...+..
T Consensus       285 ~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~  363 (493)
T 2uy1_A          285 LDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            3467788888888889999999999999 433345666766676666666 69999999999999999999888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      ....|+.+.|...|+++.    .....|......
T Consensus       364 e~~~~~~~~aR~l~er~~----k~~~lw~~~~~f  393 (493)
T 2uy1_A          364 LLRIGDEENARALFKRLE----KTSRMWDSMIEY  393 (493)
T ss_dssp             HHHHTCHHHHHHHHHHSC----CBHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence            888999999999988872    344555544443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.08  E-value=0.05  Score=59.22  Aligned_cols=59  Identities=10%  Similarity=0.111  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA  558 (580)
Q Consensus       500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  558 (580)
                      .+...+.-++..++|+-|+++.++++.+-|.....|+.|+.+|..+|+|+.|+-.++.+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            45555666678899999999999999999999999999999999999999998877655

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.02  E-value=0.12  Score=53.59  Aligned_cols=78  Identities=14%  Similarity=0.002  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          500 YYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       500 ~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      .+..||.+......++.|..+|.+|+.+.|++...|+.+|.+....++.-+|.-+|-+++.-....+.+..++..+.+
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            455667766666777777777777777777777777777777777777777777777777666666666666666544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.96  E-value=0.38  Score=50.25  Aligned_cols=104  Identities=6%  Similarity=-0.063  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK-KNVKAYLRRGT  540 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p-~~~~a~~~lg~  540 (580)
                      +...|..+-..+.+.|++++|++.|++..+.. .-+...|+.+-..|.+.|+.++|.+.+++..+..- -+...|..+-.
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~  183 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLK  183 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            34577888899999999999999999988753 22567888999999999999999999999887632 25678888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhh--CCCCH
Q 008025          541 AREMLGYYKEAIEDFSYALVL--EPTNK  566 (580)
Q Consensus       541 ~~~~~g~~~~A~~~~~~al~l--~p~~~  566 (580)
                      +|.+.|+.++|.+.|++-.+.  .|+..
T Consensus       184 ~~~~~g~~d~A~~ll~~Mr~~g~~ps~~  211 (501)
T 4g26_A          184 VSMDTKNADKVYKTLQRLRDLVRQVSKS  211 (501)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred             HHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence            999999999999999987664  45433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.83  E-value=0.085  Score=57.44  Aligned_cols=62  Identities=10%  Similarity=0.072  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  524 (580)
                      ....+...+..+.++|+|+-|++.-++++...|.+...|+.|+.||.++|+|+.|+=.++-+
T Consensus       336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44567778999999999999999999999999999999999999999999999998666554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.42  E-value=0.57  Score=39.50  Aligned_cols=87  Identities=13%  Similarity=-0.044  Sum_probs=69.4

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRR  538 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l  538 (580)
                      .....+..|...+.. ...+|.++|.+.|+.++++....+..|...|.--..+|+...|.+.+.+++.+.|...+.+ ..
T Consensus        56 ~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l-e~  133 (161)
T 4h7y_A           56 QNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML-EI  133 (161)
T ss_dssp             TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH-HH
T ss_pred             cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH-HH
Confidence            344566777777755 5669999999999999999888899999999999999999999999999999999765533 34


Q ss_pred             HHHHHHcCC
Q 008025          539 GTAREMLGY  547 (580)
Q Consensus       539 g~~~~~~g~  547 (580)
                      ++.-.+.|+
T Consensus       134 a~~nl~~~~  142 (161)
T 4h7y_A          134 ALRNLNLQK  142 (161)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHhhhcCC
Confidence            444444443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.36  E-value=0.33  Score=45.30  Aligned_cols=66  Identities=18%  Similarity=0.070  Sum_probs=59.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 008025          507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA  572 (580)
Q Consensus       507 ~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l  572 (580)
                      ..++.++.++|++.+...++.+|.+......+-..+.-.|+++.|.+.++.+.+++|+....-..+
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~y   71 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL   71 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            356789999999999999999999999999999999999999999999999999999976554443

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.34  E-value=2.2  Score=36.60  Aligned_cols=103  Identities=14%  Similarity=0.042  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--h---------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIK--L---------------NGNNAT-YYSNRAAAYLESGSFLQAEADCTK  523 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~--~---------------~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~  523 (580)
                      +.+...+....++.+.++|..|+..+++.+.  .               +|.+.+ .+..+|.+..+.|+-++|+.++..
T Consensus        60 NT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~  139 (242)
T 3kae_A           60 NTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR  139 (242)
T ss_dssp             CBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence            4566778899999999999999999999993  2               344444 466789999999999999999999


Q ss_pred             HHHcCCCC------------------------------------------------HH------------HHHHHHHHHH
Q 008025          524 AINLDKKN------------------------------------------------VK------------AYLRRGTARE  543 (580)
Q Consensus       524 al~l~p~~------------------------------------------------~~------------a~~~lg~~~~  543 (580)
                      ....+|-.                                                .+            ...+.+..|+
T Consensus       140 Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf  219 (242)
T 3kae_A          140 SFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYF  219 (242)
T ss_dssp             HHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHH
T ss_pred             hcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            88775410                                                00            1223466788


Q ss_pred             HcCCHHHHHHHHHHHHhhCCC
Q 008025          544 MLGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       544 ~~g~~~~A~~~~~~al~l~p~  564 (580)
                      .+|..+++..+|...-+.+|.
T Consensus       220 ~lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          220 NLGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT
T ss_pred             hcccchhHHHHHHHHHhcCCC
Confidence            899999999999999888885

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.18  E-value=1.1  Score=44.65  Aligned_cols=95  Identities=13%  Similarity=0.010  Sum_probs=75.5

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC----HHH
Q 008025          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGN--N----ATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKN----VKA  534 (580)
Q Consensus       468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~---p~~----~~a  534 (580)
                      ..+|..|+..|+|.+|++.+.+.++.-..  +    .+.+..-...|..++++.++...|.++....   +..    +..
T Consensus       103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            46899999999999999999998874222  2    4667788889999999999999999987653   122    234


Q ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHhhC
Q 008025          535 YLRRGTARE-MLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       535 ~~~lg~~~~-~~g~~~~A~~~~~~al~l~  562 (580)
                      ...-|..+. ..++|.+|..+|-++++-.
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            455688898 8999999999999987543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.81  E-value=1  Score=45.82  Aligned_cols=99  Identities=9%  Similarity=-0.125  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCC---HHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN---NATYYSNRAAAYLESGSFLQAEADCTKAINLD---KKN---VKAY  535 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~---p~~---~~a~  535 (580)
                      ..+..+|..+++.|++++|++.|.++......   -.+.+.....+++..+++..+...+.++-.+-   ++.   ....
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            45678999999999999999999999886433   36788889999999999999999999986652   222   1234


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                      ...|..+...++|.+|..+|..++.-..
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            4557888889999999999988876543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.72  E-value=0.59  Score=46.92  Aligned_cols=62  Identities=10%  Similarity=-0.041  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAIN  526 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  526 (580)
                      .+...++..+...|++.+++..+.+++..+|-+-.+|..+-.+|+..|+..+|++.|+++-+
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34566788889999999999999999999999999999999999999999999999988654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.69  E-value=0.28  Score=50.57  Aligned_cols=104  Identities=14%  Similarity=0.044  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHH----------HHHHHHHHh-----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAI----------SFYTEAIKL-----NGN-NATYYSNRAAAYLESGSFLQAEADCTKAI  525 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai----------~~~~~al~~-----~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al  525 (580)
                      -.+..|+.....+-..|+..+.+          ..+..+++.     +.. ....++.+-..|+..+.|++|.....++.
T Consensus       179 l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~  258 (523)
T 4b4t_S          179 INAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE  258 (523)
T ss_dssp             ------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc
Confidence            34566776666666666655432          222223321     222 36778889999999999999999999985


Q ss_pred             HcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025          526 NLDKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  567 (580)
Q Consensus       526 ~l~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  567 (580)
                        .|.+       ...+|.+|.++...++|.+|.+++..|+...|.+..
T Consensus       259 --fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~  305 (523)
T 4b4t_S          259 --YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK  305 (523)
T ss_dssp             --SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred             --CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence              3422       345677899999999999999999999999886543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.41  E-value=4.7  Score=41.06  Aligned_cols=101  Identities=12%  Similarity=0.024  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCC
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLN--GNN----ATYYSNRAAAYLESGSFLQAEADCTKAIN---LDKKN  531 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~--p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~---l~p~~  531 (580)
                      ...+.....++..+...|+|.+|.+.+.....-.  ..+    .+.+......|+..+++.+|...++++-.   -.+..
T Consensus       134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~  213 (445)
T 4b4t_P          134 VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKY  213 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCc
Confidence            3456667789999999999999999988875421  111    46788888899999999999999988632   12333


Q ss_pred             H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 008025          532 V----KAYLRRGTAREMLGYYKEAIEDFSYALVL  561 (580)
Q Consensus       532 ~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l  561 (580)
                      +    ..+...|..+...++|.+|..+|..+++.
T Consensus       214 ~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          214 ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            2    34566688888999999999999988764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=90.20  E-value=3.2  Score=43.08  Aligned_cols=84  Identities=11%  Similarity=-0.024  Sum_probs=69.8

Q ss_pred             cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025          478 KQWLKAISFYTEAIKLN-GNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-KKNVKAYLRRGTAREMLGYYKEAIEDF  555 (580)
Q Consensus       478 g~~~~Ai~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  555 (580)
                      ++.++|.+.|++..+.. .-+...|..+-..|.+.|++++|++.+++..+.. .-+...|..+-.+|.+.|+.++|.+.|
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~  163 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD  163 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence            44788999999877653 2256788999999999999999999999988763 226778888889999999999999999


Q ss_pred             HHHHhh
Q 008025          556 SYALVL  561 (580)
Q Consensus       556 ~~al~l  561 (580)
                      ++-.+.
T Consensus       164 ~~M~~~  169 (501)
T 4g26_A          164 AHMVES  169 (501)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            988765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.00  E-value=1.6  Score=48.07  Aligned_cols=47  Identities=23%  Similarity=0.100  Sum_probs=33.7

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 008025          473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA  524 (580)
Q Consensus       473 ~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  524 (580)
                      ..+..|++++|.+..+     ..++...|..+|..+++.++++.|+++|.++
T Consensus       661 ~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          661 LALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            3455666666666532     2356788888888888888888888888774

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=88.50  E-value=3.5  Score=35.91  Aligned_cols=82  Identities=12%  Similarity=-0.055  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~  543 (580)
                      ...|..+|...+.+|+++-|..+|.++-     +.   ..+...|.-.|+-++-.+..+.+...+.     +.....++.
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D~---~~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l  100 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQTQH-----SF---DKLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNTF  100 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTT-----CH---HHHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHhC-----CH---HHHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHH
Confidence            3455556666666666666666655541     11   1222333334444433333333222221     111234455


Q ss_pred             HcCCHHHHHHHHHHH
Q 008025          544 MLGYYKEAIEDFSYA  558 (580)
Q Consensus       544 ~~g~~~~A~~~~~~a  558 (580)
                      .+|+++++++.|.+.
T Consensus       101 ~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B          101 YNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHTCHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHC
Confidence            677777777776544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=88.19  E-value=3.9  Score=35.58  Aligned_cols=80  Identities=11%  Similarity=0.032  Sum_probs=56.2

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHH
Q 008025          471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD--------KKNVKAYLRRGTAR  542 (580)
Q Consensus       471 g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~--------p~~~~a~~~lg~~~  542 (580)
                      -....+.|+++.|.+..++.     ++...|..||...+..|+++-|+++|+++-..+        -.+.+-+..++...
T Consensus        12 F~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA   86 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIA   86 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            34556779999999886654     677899999999999999999999998743221        23444455556666


Q ss_pred             HHcCCHHHHHHHH
Q 008025          543 EMLGYYKEAIEDF  555 (580)
Q Consensus       543 ~~~g~~~~A~~~~  555 (580)
                      ...|++.-|..++
T Consensus        87 ~~~g~~n~af~~~   99 (177)
T 3mkq_B           87 QTREDFGSMLLNT   99 (177)
T ss_dssp             HHTTCHHHHHHHH
T ss_pred             HHCccHHHHHHHH
Confidence            6666666655544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=86.66  E-value=11  Score=42.32  Aligned_cols=99  Identities=6%  Similarity=-0.142  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----NGNNATYYSNRAAAYLESGSFLQAEADCTKAINL--DKKNVKAY  535 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l--~p~~~~a~  535 (580)
                      .....+..+-+.+.+.|+.++|.+.|.+..+.    -.-+...|+.+-..|.+.|++++|.+.|++..+.  .| +...|
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTY  203 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHH
Confidence            44567888999999999999999999775432    2335788999999999999999999999998775  35 67778


Q ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHhh
Q 008025          536 LRRGTAREMLGY-YKEAIEDFSYALVL  561 (580)
Q Consensus       536 ~~lg~~~~~~g~-~~~A~~~~~~al~l  561 (580)
                      ..+-.++.+.|+ .++|.+.|++-.+.
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~k  230 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQE  230 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence            888788889897 57888999887765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.50  E-value=5.9  Score=43.46  Aligned_cols=59  Identities=20%  Similarity=0.115  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKL--------NGNNATYYSNRAAAYLESGSFLQAEADC  521 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~  521 (580)
                      +...|..+|..+.+.++++.|+++|.++-..        ..++.+.+..++......|++..|...|
T Consensus       680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~  746 (814)
T 3mkq_A          680 AEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAY  746 (814)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence            4568899999999999999999999986221        2334444445555555555555555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	580
d2gi3a1	475	c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransf	1e-49
d2f2aa1	485	c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransf	3e-46
d1m22a_	490	c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomon	6e-28
d1ocka_	412	c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium jap	4e-23
d1mt5a_	537	c.117.1.1 (A:) Fatty acid amide hydrolase (oleamid	2e-21
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-21
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	5e-07
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	1e-17
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	8e-15
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	6e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	7e-14
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	8e-12
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	1e-11
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-11
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-05
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	2e-11
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-11
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-11
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-08
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	1e-09
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.001
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.001
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-09
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-05
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-08
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-07
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	8e-07
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-05
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	3e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	7e-06
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.003
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	1e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.001
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.004

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

 Score =  176 bits (448), Expect = 1e-49
 Identities = 86/399 (21%), Positives = 161/399 (40%), Gaps = 27/399 (6%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
              G+  A+ D     G  T          +  +   +TVV  + E G   +GK  +DEF
Sbjct: 57  KFWGIPVAIKDNILTLGMRTTCASRILE--NYESVFDATVVKKMKEAGFVVVGKANLDEF 114

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
           A   +     +    NP    ++PGGSS G+A AV+A +V  +LG DT G VR P++ CG
Sbjct: 115 AMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCG 174

Query: 177 ILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK-ILRHVGHVLLQLPFAAQRSPRQIII 235
           ++G++P+YG VS  G++  ++SLD +G   +  +     +  +  +    A    R++  
Sbjct: 175 VVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDF 234

Query: 236 ADDCFELLKIPADRVVQVVI-----KSTEKLFGRQVLKHENLG-EYFDSKVPSLKGFHKT 289
             +  E +      V + +      +   + F   +   E LG +    K+P +K    T
Sbjct: 235 LSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGAKVERVKIPHIKYSVAT 294

Query: 290 -----------NGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEML-----E 333
                      N    + ++   R + K     ++++       ++   I          
Sbjct: 295 YYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAA 354

Query: 334 ISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLL 393
             E        +R ++   ++ +L     ++TPT+     K+G  +     Y    F+  
Sbjct: 355 YYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFT-- 412

Query: 394 SIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432
             A+++G   ++VP G+ +  P  V  I R   D  +  
Sbjct: 413 IPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFR 451

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]} Length = 485

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

 Score =  167 bits (424), Expect = 3e-46
 Identities = 85/406 (20%), Positives = 154/406 (37%), Gaps = 30/406 (7%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +    L G+   + D     G  T                T        +  A  IGK  
Sbjct: 66  QMDGKLFGIPMGIKDNIITNGLETTCASKMLEGFVPIYESTVMEKLH--KENAVLIGKLN 123

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
           +DEFA   +    ++    NP     +PGGSS G+A AVAA LV  SLG DT G +R P+
Sbjct: 124 MDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSLGSDTGGSIRQPA 183

Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPK----ILRHVGHVLLQLPFAAQR 228
           A+CG++G +P+YG VS  G++  ++SLD +G   R+ K    +L  +    +    +A  
Sbjct: 184 AYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPV 243

Query: 229 SPRQIIIA-DDCFELLKI--PADRVVQVVIKSTEKLFGRQVLKHENLG-EYFDSKVPSLK 284
                        + LK+  P + + + V    ++     V   ++LG    +  +P+ K
Sbjct: 244 DDVDFTSEIGKDIKGLKVALPKEYLGEGVADDVKEAVQNAVETLKSLGAVVEEVSLPNTK 303

Query: 285 ------------GFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEML 332
                                  +       E  +    +  S       ++   I    
Sbjct: 304 FGIPSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGT 363

Query: 333 -----EISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQN 387
                   +   +  + +R  +++    + ++  ++V PT       LG  E + +    
Sbjct: 364 FALSSGYYDAYYKKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLG--EEIDDPLTM 421

Query: 388 RAFSLL-SIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432
            A  LL +  +++G   ++VP G  +  P  + FI +   ++ L  
Sbjct: 422 YANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYR 467

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]} Length = 490

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

 Score =  115 bits (287), Expect = 6e-28
 Identities = 96/413 (23%), Positives = 151/413 (36%), Gaps = 43/413 (10%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +   PL G+   + D  +     T  G              + +V  L + GA  +GKT 
Sbjct: 69  RLRGPLHGIPLLLKDNINAAPMATSAGSLAL---QGFRPDDAYLVRRLRDAGAVVLGKTN 125

Query: 113 VDEFA-----YSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGG 167
           + E+A      SI+G +       NP   S  P GSSSG+AVAVAA+L   ++G +T G 
Sbjct: 126 LSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVAIGTETDGS 185

Query: 168 VRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVL-LQLPFAA 226
           +  P+A  G++G +P+ G VS  GIIPIS S DT G  AR       V   +  +     
Sbjct: 186 IVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIAGRDDADP 245

Query: 227 QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV--LKHENLGEYFDSKVPSLK 284
             +        D    L     R  ++ +  T  L  R +  L  +   E   +    + 
Sbjct: 246 ATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLLKYRGMPPLIEQAATELRRAGAVVVP 305

Query: 285 GFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPAL-----------------------D 321
                 G      R +  YEFK     +  + +  L                       +
Sbjct: 306 VELPNQGAWAEAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQE 365

Query: 322 PDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGI--LVTPTTAYPPPKLGGKE 379
             + A+    L     +     + R      I + L    +  LV PTT    P     +
Sbjct: 366 LLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGD 425

Query: 380 MLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLD 432
               +         S A+V+G   +TVP+G  D  P  + F+     +  L++
Sbjct: 426 DFPGES-------YSAAAVAGYPSLTVPMGQIDGLPVGLLFMGTAWSEPKLIE 471

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]} Length = 412

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 99.8 bits (247), Expect = 4e-23
 Identities = 84/393 (21%), Positives = 139/393 (35%), Gaps = 32/393 (8%)

Query: 53  KAPHPLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTV 112
           +A  PL G++  + D+ D     T  G   +          + VV  L   GAT IGKT 
Sbjct: 49  QASGPLRGIAVGIKDIIDTANMPTEMGSEIYR--GWQPRSDAPVVMMLKRAGATIIGKTT 106

Query: 113 VDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPS 172
              FA        +     +       PGGSSSG+A AV A ++  +LG  T G V  P+
Sbjct: 107 TTAFASRDPTATLNPHNTGHS------PGGSSSGSAAAVGAGMIPLALGTQTGGSVIRPA 160

Query: 173 AFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAAQRSPRQ 232
           A+CG    +PS+  +  +G+   S +LDTVG F    + L      +      +   P +
Sbjct: 161 AYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAK 220

Query: 233 IIIADDCFELLKIPADRVVQVVIKSTEKLFGRQVLKHENLGEYFDSKVPSLKGFHKTNGE 292
                   +      +   +  +++  K   R     +                 +   E
Sbjct: 221 APRIGVVRQEFAGAVEPAAEQGLQAAIKAAERAGASVQA------------IDLPEAVHE 268

Query: 293 LKNVMRLIQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSA 352
              +  +IQ +E               + P + A +   + ++    +  + I    R  
Sbjct: 269 AWRIHPIIQDFEAHRALAWEFSEHHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRE 328

Query: 353 ISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYD 412
           +  + +   +L+T +     P         +   NR ++L+      G   V VP+    
Sbjct: 329 LGEVFEGVDVLLTYSAPGTAPAKAL-ASTGDPRYNRLWTLM------GNPCVNVPVLKVG 381

Query: 413 KCPTSVSFIARHGGDRFLLDTVQNMYASLQEQA 445
             P  V  IAR G D   L T     A   E A
Sbjct: 382 GLPIGVQVIARFGNDAHALAT-----AWFLEDA 409

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 537

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 95.5 bits (236), Expect = 2e-21
 Identities = 75/438 (17%), Positives = 130/438 (29%), Gaps = 71/438 (16%)

Query: 57  PLTGLSFAVSDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEF 116
            L G+  ++ + F  +G+ +  G          +     VV  L   GA     T V + 
Sbjct: 97  LLYGVPVSLKECFSYKGHDSTLGLS--LNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQS 154

Query: 117 AYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCG 176
             S + +N  +    NP   S+ PGGSS G    + +      LG D  G +R PSAFCG
Sbjct: 155 MLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCG 214

Query: 177 ILGFRPSYGAVSHMGIIPI----STSLDTVGWFARDPKILRHVGHVL------------- 219
           I G +P+   +S  G+       +    ++G  ARD + L      L             
Sbjct: 215 ICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDPTVP 274

Query: 220 ----LQLPFAAQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLFGRQV--------- 266
                +  + + R  R      D + +      R +    +  E      +         
Sbjct: 275 PLPFREEVYRSSRPLRVGYYETDNYTMPSPAMRRALIETKQRLEAAGHTLIPFLPNNIPY 334

Query: 267 -LKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIESVKPALDPDIS 325
            L+  + G  F     S     K +     +  LI      +     +  +   L P ++
Sbjct: 335 ALEVLSAGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLA 394

Query: 326 AEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGI--LVTPTTAYPPPKLGGKEMLSE 383
           A +  M   S   +   +      R ++ +  K   +  L+TP                 
Sbjct: 395 AFLNSMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRA--- 451

Query: 384 DYQNRAFSLLSIASVSGCCQVTVPLGYYDKC----------------------------- 414
                A S   + +        VP+                                   
Sbjct: 452 ---TGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVG 508

Query: 415 -PTSVSFIARHGGDRFLL 431
            P +V  +A    +   L
Sbjct: 509 LPVAVQCVALPWQEELCL 526

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.0 bits (222), Expect = 3e-21
 Identities = 37/106 (34%), Positives = 57/106 (53%)

Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCT 522
           SA+  KE+GN+ +  +++ +A + Y  AI  N   A YY+NRA  YL+     QA ADC 
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 523 KAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           +A+ LD ++VKA+   G  +  +  Y EAI +   A  L    +  
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (114), Expect = 5e-07
 Identities = 11/107 (10%), Positives = 31/107 (28%), Gaps = 5/107 (4%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           G    + + + +AI+    A  L       + +   + L       A+     +I   + 
Sbjct: 79  GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----IAKKKRWNSIEERRI 133

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577
           + ++ L     R +    +  +E+          +         +  
Sbjct: 134 HQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEA 180

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 1e-17
 Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + A   KE GN AYK K +  A+  Y +A +L+  N TY +N+AA Y E G + +    C
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELC 61

Query: 522 TKAINLDKKNV-------KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566
            KAI + ++N        KAY R G +      YK+AI  ++ +L    T  
Sbjct: 62  EKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 70.4 bits (171), Expect = 8e-15
 Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 15/131 (11%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL---------------NGNNATYYSNRAA 506
           + A I KEKG   +K  ++++A+  Y + +                        + N A 
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 72

Query: 507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566
            YL+   + +A   C KA+ LD  N K   RRG A+ ++  ++ A  DF   L + P NK
Sbjct: 73  CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 132

Query: 567 RASLSADRLRK 577
            A L     +K
Sbjct: 133 AARLQIFMCQK 143

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 6e-14
 Identities = 44/116 (37%), Positives = 67/116 (57%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           + AE  K + N  +K K +  AI FY++AI+LN +NA YY NR+ AYL +  +  A  D 
Sbjct: 8   KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDA 67

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK 577
           T+AI LDKK +K Y RR  +   LG ++ A+ D+   + ++P +K A +      K
Sbjct: 68  TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 7e-14
 Identities = 11/80 (13%), Positives = 27/80 (33%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           E  ++ Y+   +  A     +  +   +N       ++ + +     ++    T AI  +
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 529 KKNVKAYLRRGTAREMLGYY 548
               +AY   G   +  G  
Sbjct: 64  PLLAEAYSNLGNVYKERGQL 83

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (167), Expect = 3e-13
 Identities = 22/109 (20%), Positives = 42/109 (38%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           Q    +      N   +     +A   Y  A++L   +A   +N A    E G+  +A  
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
              KA+ +  +   A+    +  +  G  +EA+  +  A+ + PT   A
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 5e-13
 Identities = 26/105 (24%), Positives = 39/105 (37%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTK 523
           A +        Y+      AI  Y  AI+L  +    Y N A A  E GS  +AE     
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 524 AINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
           A+ L   +  +       +   G  +EA+  +  AL + P    A
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.0 bits (162), Expect = 2e-12
 Identities = 15/76 (19%), Positives = 30/76 (39%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
            N   +     +A+  Y +A+++    A  +SN A+   + G   +A     +AI +   
Sbjct: 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371

Query: 531 NVKAYLRRGTAREMLG 546
              AY   G   + + 
Sbjct: 372 FADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.9 bits (154), Expect = 1e-11
 Identities = 27/104 (25%), Positives = 43/104 (41%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
                +     GN   + + + +A++ Y  A+ L+ N+A  + N A  Y E G    A  
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258

Query: 520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
              +AI L      AY     A +  G   EA + ++ AL L P
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 11/66 (16%), Positives = 19/66 (28%)

Query: 503 NRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLE 562
             A    ++G F  AE  C +    +  N    L   +          +    + A+   
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 563 PTNKRA 568
           P    A
Sbjct: 64  PLLAEA 69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 3e-07
 Identities = 19/84 (22%), Positives = 33/84 (39%)

Query: 472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN 531
           N      +  +A + Y +AI+   N A  +SN    +   G    A     KA+ LD   
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

Query: 532 VKAYLRRGTAREMLGYYKEAIEDF 555
           + AY+  G   +    +  A+  +
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAY 226

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 14/118 (11%)

Query: 458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFL-- 515
             Q   A      G       +   AI  + +A+ L+ N          AY+  G+ L  
Sbjct: 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD-------AYINLGNVLKE 215

Query: 516 -----QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
                +A A   +A++L   +   +          G    AI+ +  A+ L+P    A
Sbjct: 216 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-04
 Identities = 11/51 (21%), Positives = 20/51 (39%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG 512
           + A       +   +  +  +A+  Y EAI+++   A  YSN      E  
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYL 509
           +  +  +     +  ++ ++  ++  F T AIK N   A  YSN    Y 
Sbjct: 29  EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 8e-12
 Identities = 33/131 (25%), Positives = 53/131 (40%), Gaps = 15/131 (11%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEA---------------IKLNGNNATYYSNRAA 506
           + + I KE+G   +K+ ++ +A+  Y +                 K        + N A 
Sbjct: 11  EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 70

Query: 507 AYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK 566
            +L+  +F  A   C KA+ LD  N K   RRG A   +  ++ A  DF   L L P NK
Sbjct: 71  CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK 130

Query: 567 RASLSADRLRK 577
            A       ++
Sbjct: 131 AAKTQLAVCQQ 141

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 60.8 bits (146), Expect = 1e-11
 Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 16/146 (10%)

Query: 448 ATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTE----------------AI 491
           A KS        + QSA   KE+GN+ +K  +  +AI  Y E                  
Sbjct: 1   AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD 60

Query: 492 KLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA 551
           K      +   N A  Y ++  + +A    +K + +DK NVKA  + G A    G+ +EA
Sbjct: 61  KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 120

Query: 552 IEDFSYALVLEPTNKRASLSADRLRK 577
            E+   A  L P N     S +    
Sbjct: 121 KENLYKAASLNPNNLDIRNSYELCVN 146

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (153), Expect = 1e-11
 Identities = 16/122 (13%), Positives = 37/122 (30%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
           N  +      E+G +  ++     A+  +  A++ +  +   +        E+   L A 
Sbjct: 14  NPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 73

Query: 519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV 578
           +   + + L   N  A +    +       ++A E     L   P        A+     
Sbjct: 74  SALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGG 133

Query: 579 FM 580
             
Sbjct: 134 AG 135

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 20/98 (20%), Positives = 43/98 (43%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
           G       ++ KA+  +T A+ +  N+   ++   A         +A A   +A+ L   
Sbjct: 179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            +++    G +   LG ++EA+E F  AL ++  ++  
Sbjct: 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP 276

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.9 bits (146), Expect = 2e-11
 Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 16/132 (12%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEA----------------IKLNGNNATYYSNRA 505
             +E  K  GN  +K + W  AI  YT+                  KL     +   N  
Sbjct: 25  LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIG 84

Query: 506 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
           A  L+   +  A   C +A+ +D  N KA  RR    + L  Y +A+ D   A  + P +
Sbjct: 85  ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 144

Query: 566 KRASLSADRLRK 577
           K       ++++
Sbjct: 145 KAIQAELLKVKQ 156

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 2e-11
 Identities = 37/107 (34%), Positives = 54/107 (50%)

Query: 462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC 521
           +     KEKGN+A        A+  Y+EAIKL+ +N   YSNR+AAY + G + +A  D 
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 522 TKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            K ++L     K Y R+  A E L  ++EA   +   L  E  N + 
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 107

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 3e-11
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 3/96 (3%)

Query: 470 KGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDK 529
           +G  A   K W  A+  ++        ++    N    Y    +  +AE   T++IN DK
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 530 KNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
               AY +RG        Y  AI+D   AL+    N
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 103

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 1e-08
 Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 16/127 (12%)

Query: 460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEA 519
           Q   + I    G      K   +A   +T +I  + + A  Y  R   Y ++  +  A  
Sbjct: 32  QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 91

Query: 520 DCTKAINLDKKN----------------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
           D  +A+   + N                 +              +K+A E  + A  ++ 
Sbjct: 92  DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151

Query: 564 TNKRASL 570
             + + +
Sbjct: 152 EPRHSKI 158

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 7e-04
 Identities = 13/99 (13%), Positives = 33/99 (33%), Gaps = 12/99 (12%)

Query: 465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKA 524
           ++A +   +A    +  + I +    ++          N A  Y +   + +AE     A
Sbjct: 87  DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146

Query: 525 INLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
            ++  +   + +             +A+E      + EP
Sbjct: 147 TSMKSEPRHSKI------------DKAMECVWKQKLYEP 173

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 15/99 (15%), Positives = 31/99 (31%)

Query: 469 EKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD 528
           E    A+      ++  FY   +                     S L++  +  +    +
Sbjct: 213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272

Query: 529 KKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR 567
           K  +   +    A + L Y KE ++ FS    ++P    
Sbjct: 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 311

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 7/60 (11%), Positives = 18/60 (30%)

Query: 459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAE 518
             K                    + + +++    ++   A Y  +  + +L   S L+ E
Sbjct: 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 330

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 14/140 (10%), Positives = 42/140 (30%), Gaps = 16/140 (11%)

Query: 438 YASLQEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497
             + +EQA+     +       Q  +  + +++      +      +   ++ +  N + 
Sbjct: 7   VKTSEEQAEAKRLEREQKLKLYQSATQAVFQKRQAGELDES----VLELTSQILGANPDF 62

Query: 498 ATYYSNR----------AAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGY 547
           AT ++ R           +    +             + ++ K+   +  R      L  
Sbjct: 63  ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122

Query: 548 --YKEAIEDFSYALVLEPTN 565
             +   +E  +  L  +  N
Sbjct: 123 PNWARELELCARFLEADERN 142

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.2 bits (90), Expect = 0.001
 Identities = 12/104 (11%), Positives = 34/104 (32%), Gaps = 3/104 (2%)

Query: 468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAA--YLESGSFLQAEADCTKAI 525
           + + +           + F    +++N  +   + +R      L   ++ +    C + +
Sbjct: 77  ETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFL 136

Query: 526 NLDKKNV-KAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
             D++N      RR  A +      E +      +    +N  +
Sbjct: 137 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSS 180

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 57.0 bits (137), Expect = 1e-09
 Identities = 18/102 (17%), Positives = 37/102 (36%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
              A  + Q  +A+    EAIK +  +A+  S+        G F +A+    ++I L  +
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSA 572
            +    +     +     K+  +  + A VL    +      
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLV 104

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 12/65 (18%), Positives = 20/65 (30%)

Query: 504 RAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP 563
           +    L  G   QA     +AI    K+            + G ++ A E    ++ L P
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 564 TNKRA 568
                
Sbjct: 62  EYLPG 66

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 51.7 bits (122), Expect = 2e-08
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 23/137 (16%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLN------------GNNATYYSNRAAAYLES 511
           A +A     +     ++ +A +    A++++            G +A  ++  A A    
Sbjct: 9   AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL 68

Query: 512 GSFLQAEADCTKAI-----------NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 560
            SF +A     KA+           +  K  + A   R  A + LG   EA+ +F   + 
Sbjct: 69  RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128

Query: 561 LEPTNKRASLSADRLRK 577
           +    K  +   +R+ +
Sbjct: 129 MIEERKGETPGKERMME 145

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 1/91 (1%)

Query: 476 KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQ-AEADCTKAINLDKKNVKA 534
           +D++  +A     +AI+LN  N T +  R          L       T  I    KN + 
Sbjct: 55  RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 114

Query: 535 YLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
           +  R    E L    + +E  +  L  +  N
Sbjct: 115 WHHRRVLVEWLRDPSQELEFIADILNQDAKN 145

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 1/73 (1%)

Query: 490 AIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLG-YY 548
            I  +      Y    A         +A      AI L+  N   +  R    + L    
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 549 KEAIEDFSYALVL 561
            E +   +  +  
Sbjct: 95  HEEMNYITAIIEE 107

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 8e-07
 Identities = 11/117 (9%), Positives = 30/117 (25%), Gaps = 2/117 (1%)

Query: 452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES 511
             + N  N  +S   A            + + +        ++       S       + 
Sbjct: 74  GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQ 133

Query: 512 GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
                     + + +   ++    +  G          +A   + +A  L P+N + 
Sbjct: 134 THTSAIVKPQSSSCSYICQH--CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP 188

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 9/79 (11%), Positives = 23/79 (29%), Gaps = 8/79 (10%)

Query: 481 LKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLD-----KKNVKAY 535
           L++  +  +A  L  +        A  +    +         K +  D      K V+  
Sbjct: 3   LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQD 59

Query: 536 LRRGTAREMLGYYKEAIED 554
           L     +  +   +   ++
Sbjct: 60  LWNHAFKNQITTLQGQAKN 78

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 5/102 (4%)

Query: 472 NQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES---GSFLQAEADCTKAINLD 528
           N+    +  LK    +         + +     A   + +       +      + +   
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66

Query: 529 KKN--VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRA 568
            K                L  Y++A++     L  EP N +A
Sbjct: 67  SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 108

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 46.7 bits (109), Expect = 3e-06
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 1/128 (0%)

Query: 439 ASLQEQADIATKSK-LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN 497
            +LQ++  +A   + L++      + A++  E+G           A + +++A+ +  + 
Sbjct: 11  PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM 70

Query: 498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSY 557
              ++       ++G+F  A       + LD     A+L RG A    G  K A +D   
Sbjct: 71  PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 130

Query: 558 ALVLEPTN 565
               +P +
Sbjct: 131 FYQDDPND 138

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 45.6 bits (106), Expect = 7e-06
 Identities = 16/95 (16%), Positives = 26/95 (27%)

Query: 471 GNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK 530
             Q   +KQ  + +  + E                    E     + +AD T   +L + 
Sbjct: 148 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 207

Query: 531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
             +     G     LG    A   F  A+     N
Sbjct: 208 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 242

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 4/68 (5%)

Query: 505 AAAYLESGSFLQAEADCTKAIN----LDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALV 560
           A     +       A   + +      D +  +    RG   + LG    A  DFS AL 
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65

Query: 561 LEPTNKRA 568
           + P     
Sbjct: 66  IRPDMPEV 73

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 1e-05
 Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG-------NNATYYSNRAAAYLESGSFL 515
           +AE + E G  AY +  +     +  +A++          +  +     + A  + G   
Sbjct: 4   TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD 63

Query: 516 QAEADCTKAINLDKKNVKAYLRRGTAREMLG 546
           +A     K + LD ++ +A         ++ 
Sbjct: 64  KALLLTKKLLELDPEHQRANGNLKYFEYIMA 94

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 11/113 (9%)

Query: 464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAE 518
           AE    +   A  D    +A      A++              S         G   ++ 
Sbjct: 12  AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSL 71

Query: 519 ADCTKAINLDKKN------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN 565
           A   +   + +++      + + +++       G+ + A E    A  L    
Sbjct: 72  ALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQ 124

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 14/122 (11%), Positives = 42/122 (34%), Gaps = 8/122 (6%)

Query: 441 LQEQADIATKSKL-------STNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL 493
           L ++A+               ++++  +++A++  +        K+   A   + +A   
Sbjct: 7   LLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADY 66

Query: 494 NGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIE 553
                         Y+E+    ++  +   A++  +  ++ +  RG  R    +  E  E
Sbjct: 67  QKKA-GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125

Query: 554 DF 555
             
Sbjct: 126 IL 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	580
d2gi3a1	475	Glutamyl-tRNA(Gln) amidotransferase subunit A {The	100.0
d1mt5a_	537	Fatty acid amide hydrolase (oleamide hydrolase) {R	100.0
d2f2aa1	485	Glutamyl-tRNA(Gln) amidotransferase subunit A {Sta	100.0
d1ocka_	412	Malonamidase E2 {Bradyrhizobium japonicum [TaxId:	100.0
d1m22a_	490	Peptide amidase Pam {Stenotrophomonas maltophilia	100.0
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.75
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.72
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.71
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.68
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.67
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.63
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.63
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.56
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.51
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.51
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.5
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.49
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.49
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.44
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.38
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.36
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.35
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.3
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.3
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.28
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.28
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.28
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.14
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.14
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.12
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.12
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.12
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.12
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.09
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.09
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.95
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.8
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.75
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.73
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.72
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.65
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.47
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.4
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.31
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.28
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.27
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.23
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.16
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.05
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.03
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.78
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.73
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.58

>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.3e-82  Score=670.98  Aligned_cols=402  Identities=22%  Similarity=0.309  Sum_probs=320.2

Q ss_pred             hhhhhhH-----HHHHHH----Hh--hhccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCCh
Q 008025           13 GLGLAGI-----LLMTKK----LK--KNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGHP   81 (580)
Q Consensus        13 ~~~l~~~-----~~~~~~----~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs~   81 (580)
                      .+.++++     ++.+|+    ++  +++||.+||||+..++.+++      ..|||+||||+|||+|+++|++||+||+
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~l~ri~~~~~~lna~~~~~~~~a~~------~~gpL~GvPi~vKD~~~~~g~~tt~Gs~   81 (475)
T d2gi3a1           8 KLTIEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSVE------KKGKFWGIPVAIKDNILTLGMRTTCASR   81 (475)
T ss_dssp             GCCHHHHTTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCCC------CCSTTTTCEEEEETTBCCSSSCCCTTCG
T ss_pred             HhHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcCCEEEEcCHHHhhh------ccCCCCCCEEEEEcccCCCCCccCccCh
Confidence            4455666     444443    23  38999999999988776544      3589999999999999999999999999


Q ss_pred             hhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCccccc
Q 008025           82 EWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSLG  161 (580)
Q Consensus        82 ~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~g  161 (580)
                      .+++  +++++|+++|++||++|||++||||||||+++.+|+|.+||+|+||||+.++||||||||||+||+|++|+|+|
T Consensus        82 ~~~~--~~~~~da~~v~~L~~aGaii~Gktn~~e~~~~~~~~~~~~G~t~nP~~~~~~~GGSSgGsaaavAag~~~~a~G  159 (475)
T d2gi3a1          82 ILEN--YESVFDATVVKKMKEAGFVVVGKANLDEFAMGSSTERSAFFPTRNPWDLERVPGGSSGGSAAAVSAGMVVAALG  159 (475)
T ss_dssp             GGTT--CCCCSCCHHHHHHHHHTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTTSSSEEEE
T ss_pred             hhcC--CCCCCCcceeeehhhcCCccccccchhhcccccccccchhcccccccccccccCcccccchhhhhhcCcceEee
Confidence            9987  78999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc---------------
Q 008025          162 IDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---------------  226 (580)
Q Consensus       162 tD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~---------------  226 (580)
                      ||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|++.+++++.+.+..+               
T Consensus       160 tD~gGSiR~PA~~~Gv~G~kPt~G~i~~~g~~~~~~~~d~~GpmaRsv~D~alll~v~~g~d~~d~~s~~~~~~~~~~~~  239 (475)
T d2gi3a1         160 SDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTVRDAAILMEIISGRDENDATTVNRKVDFLSEIE  239 (475)
T ss_dssp             EESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHBSCBTTBTTCCSCCCCSSTTTT
T ss_pred             cCCCccchhhhHHhCceeecCCCCCCCCCCCCCCCCCCCccCCccCCHHHHHHHhhhhhccccccccccccccccchhcc
Confidence            99999999999999999999999999999999999999999999999999999999887543211               


Q ss_pred             -CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHH
Q 008025          227 -QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRY  303 (580)
Q Consensus       227 -~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  303 (580)
                       ...+.|+++..+.+.  ...++++.++++++++.|+  |++|++ +++        |.+....       ..+..+...
T Consensus       240 ~~~~~~ri~~~~~~~~--~~~~~~v~~a~~~a~~~L~~~G~~V~e-v~~--------p~~~~~~-------~~~~~i~~~  301 (475)
T d2gi3a1         240 EGVSGMKFAVPEEIYE--HDIEEGVSERFEEALKLLERLGAKVER-VKI--------PHIKYSV-------ATYYVIAPA  301 (475)
T ss_dssp             SCCTTCEEEEEGGGGG--SCCCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGHH-------HHHHHHHHH
T ss_pred             ccccccceeeeecccc--CCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchHHHH-------HHHHHHHHH
Confidence             234567776655432  3357899999999999986  777643 222        3222111       111111122


Q ss_pred             HHhhhhH------------------HHHHhhCCCCCHHHHHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHHhhcCCC
Q 008025          304 EFKNNHN------------------EWIESVKPALDPDISAEIGEMLEI-----SETVIENCKSIRNEMRSAISSLLKDD  360 (580)
Q Consensus       304 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~g~~~-----s~~~~~~a~~~r~~~~~~~~~~~~~~  360 (580)
                      ++..++.                  .+.......+.+.++.++..+...     ...++.++.+.|..+++.+.++|+++
T Consensus       302 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (475)
T d2gi3a1         302 EASSNLARFDGVKYGLRIKEKGLREMYMKTRNVGFGEEVRRRIMIGTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQY  381 (475)
T ss_dssp             HHHTC------------------------CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhcchhhhhcccccHHHHHHhhhhcccCHHHHHHHHhcchhhchHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            2221111                  112222334567777777665433     33345567788899999999999999


Q ss_pred             CEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHH
Q 008025          361 GILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYAS  440 (580)
Q Consensus       361 Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~  440 (580)
                      |+||+||++.++|++++...+...+  ....||.++|++|+|+++||+|+.+|+|+|+|+++++++|..+++++..+|+.
T Consensus       382 D~ll~Pt~~~~a~~~~~~~~~~~~~--~~~~~t~~~Nl~G~PaisvP~G~s~GlPvGvQlig~~~~D~~LL~~A~~~E~~  459 (475)
T d2gi3a1         382 DAILTPTSPVTAFKIGEIKDPLTYY--LMDIFTIPANLAGLPAISVPFGFSNNLPVGVQVIGRRFADGKVFRIARAIEKN  459 (475)
T ss_dssp             SEEEEESCSSCCCBTTTCCCHHHHH--TTTTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEeCCCCCCCCCcccccchHHHh--hhhHHHHHHHHHCCCeEEEeCCCCCCCCEeEEEECCCCCHHHHHHHHHHHHHc
Confidence            9999999999999998764332221  23348999999999999999999999999999999999999999999999976


Q ss_pred             HH
Q 008025          441 LQ  442 (580)
Q Consensus       441 l~  442 (580)
                      ..
T Consensus       460 ~~  461 (475)
T d2gi3a1         460 SP  461 (475)
T ss_dssp             CT
T ss_pred             CC
Confidence            54

>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Fatty acid amide hydrolase (oleamide hydrolase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.1e-81  Score=669.41  Aligned_cols=417  Identities=19%  Similarity=0.212  Sum_probs=329.8

Q ss_pred             cchhHHHHhhhhhhHH-----HHHHHH----hh--hccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCC
Q 008025            5 SANLWVLLGLGLAGIL-----LMTKKL----KK--NIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEG   73 (580)
Q Consensus         5 ~~~~~~~~~~~l~~~~-----~~~~~~----~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g   73 (580)
                      ..++..+++.+|++++     ++.|++    +|  ++||.+|||++.++|++.+.+ ++...||||||||+|||+|+|+|
T Consensus        35 ~~~i~~ls~~el~~~i~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~~~~~a-~~~~~gpL~GvPi~vKD~~~~~g  113 (537)
T d1mt5a_          35 SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLS-QAPRQGLLYGVPVSLKECFSYKG  113 (537)
T ss_dssp             SHHHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCSHHHH-TCCTTSTTTTCEEEEETTSCCBT
T ss_pred             hHHHHhCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEcCHHHHHHHH-cCCCCCCcCCCeEEeEcccCcCC
Confidence            4457788899999994     445543    33  889999999999888755443 34668999999999999999999


Q ss_pred             cccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhc
Q 008025           74 YVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAA  153 (580)
Q Consensus        74 ~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaa  153 (580)
                      ++||+||+.+++  +++.+|+++|++||++|||++||||||||+++.+|+|.+||+|+||||++|+||||||||||+||+
T Consensus       114 ~~tt~Gs~~~~~--~~~~~da~~V~~L~~aGaii~gkTn~~e~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaavaa  191 (537)
T d1mt5a_         114 HDSTLGLSLNEG--MPSESDCVVVQVLKLQGAVPFVHTNVPQSMLSFDCSNPLFGQTMNPWKSSKSPGGSSGGEGALIGS  191 (537)
T ss_dssp             SBCCSSCGGGSS--CBBSSCCHHHHHHHHTTCEEEEEECCCTTSCCSSCCCTTTCCCCCSSCTTSCCCSSSHHHHHHHGG
T ss_pred             CccCccChhhcC--CCCCccHHHHHHHHhCCCEEeecccccccccccchhhhhhcccccccccccccCCCcCCccccccc
Confidence            999999999987  789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCCCCcccccccccCccccccCCCccccCCCcccCC----CCCcccccccCHHHHHHHHHHhcCCC------
Q 008025          154 DLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPIST----SLDTVGWFARDPKILRHVGHVLLQLP------  223 (580)
Q Consensus       154 g~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~----sld~~G~~ar~~~d~~~v~~~l~~~~------  223 (580)
                      |++|+|+|||||||||+||+||||||||||+||||+.|+.|...    ++|++|||+|+++|+..+++++.+.+      
T Consensus       192 g~~~~a~GtD~gGSiR~PAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~d~~GpmaRsv~D~a~~l~~l~g~d~~d~~~  271 (537)
T d1mt5a_         192 GGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDVESLALCLKALLCEHLFTLDP  271 (537)
T ss_dssp             GSCSEEEEEESSSTTHHHHHHHTCEEEECCTTSSCCTTCCCSSCCCCSSCCEEEEEESSHHHHHHHHHHHSSHHHHHSCT
T ss_pred             cccccccccccccccchhhhhcCceeeeccccccCCCCCCCcccccccccccCCCccchHHHHHHHHHHhcCCCcccccc
Confidence            99999999999999999999999999999999999999988754    56999999999999999999886531      


Q ss_pred             ------cc----cCCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhh--
Q 008025          224 ------FA----AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKT--  289 (580)
Q Consensus       224 ------~~----~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~--  289 (580)
                            +.    ...++.||++..+..  ....++++.++++++++.|+  ||+|++ +++        |.+......  
T Consensus       272 ~~~~~~~~~~~~~~~k~lRIg~~~~~~--~~~~~p~v~~a~~~a~~~L~~~Ga~Vve-v~~--------~~~~~~~~~~~  340 (537)
T d1mt5a_         272 TVPPLPFREEVYRSSRPLRVGYYETDN--YTMPSPAMRRALIETKQRLEAAGHTLIP-FLP--------NNIPYALEVLS  340 (537)
T ss_dssp             TSCCCCCCHHHHSCCSCCEEEECSCCS--SSCCCHHHHHHHHHHHHHHHHTTCEEEE-CCC--------TTHHHHHHTTH
T ss_pred             ccCcchhhhhhhhcccccceeeecccc--cccccHHHHHHHhhhHHhhccccceEEe-cCC--------cchHHHHHHHH
Confidence                  11    134456777765432  23458899999999999986  888754 222        111100000  


Q ss_pred             ----hhh-HHHHHHH-------------HHHHHHhhhhHHHHHhhCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 008025          290 ----NGE-LKNVMRL-------------IQRYEFKNNHNEWIESVKPALDPDISAEIGEMLEISETVIENCKSIRNEMRS  351 (580)
Q Consensus       290 ----~~~-~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~  351 (580)
                          +.+ .......             .............+......+.+.+...+..+...+..+|.++...|+.+++
T Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (537)
T d1mt5a_         341 AGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKPLFPRLAAFLNSMRPRSAEKLWKLQHEIEMYRQ  420 (537)
T ss_dssp             HHHHSTTTTHHHHGGGTTCCCCGGGTTHHHHHTSCHHHHHHHHHHHTTTCHHHHHHHHHTSCCBHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcccccchhHHHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence                000 0000000             0000000111222233334566778888888888999999999999999999


Q ss_pred             HHHhhcC--CCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcC-------------------
Q 008025          352 AISSLLK--DDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGY-------------------  410 (580)
Q Consensus       352 ~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~-------------------  410 (580)
                      .+.++|+  ++|+||+||++ ++++++.....     ...+.||.+||++|+|+++||+++                   
T Consensus       421 ~~~~~~~~~~~Dvll~Pt~~-pa~~~~~~~~~-----~~~~~~T~~~NllG~PaisvP~g~v~~~~~~~~~~~~~~~~~~  494 (537)
T d1mt5a_         421 SVIAQWKAMNLDVLLTPMLG-PALDLNTPGRA-----TGAISYTVLYNCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDI  494 (537)
T ss_dssp             HHHHHHHHTTCSEEEEECCC-SCCCSSCGGGC-----GGGGHHHHHHHHTTCCEEEEEEEECCTTTTTGGGSCCCSSCSH
T ss_pred             HHHHHHhhcCCCEEEeCCCC-CccCcCChhhh-----hcccchHHHHHHhCCCeEEEEcCcccccccccccccccccccc
Confidence            9999996  68999999987 56665543211     234568999999999999999986                   


Q ss_pred             -----------CCCCCcccceecccCCChHHHHHHHHHHHHH
Q 008025          411 -----------YDKCPTSVSFIARHGGDRFLLDTVQNMYASL  441 (580)
Q Consensus       411 -----------~~~lp~g~q~~~~~~~d~~ll~la~~le~~l  441 (580)
                                 .+|||+|+|+++++++|+.++++++.+|+.+
T Consensus       495 ~~~~~~~~~~~~~GLPvGlQlvg~~~~D~~lL~~A~~lE~~L  536 (537)
T d1mt5a_         495 WDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLM  536 (537)
T ss_dssp             HHHHHHHHHSSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cccccccccCCCCCCCEeEEEECCCCCHHHHHHHHHHHHHHh
Confidence                       2589999999999999999999999999875

>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase subunit A {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Glutamyl-tRNA(Gln) amidotransferase subunit A
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=3.6e-80  Score=656.71  Aligned_cols=408  Identities=22%  Similarity=0.289  Sum_probs=328.5

Q ss_pred             hhhhhhH-----HHHHHHH----h--hhccCCccceeeccccCCCCCCC-------CCCCCCCCCCceeeeecccccCCc
Q 008025           13 GLGLAGI-----LLMTKKL----K--KNIKQDFGAFIEKLQLLPPPQPL-------PPKAPHPLTGLSFAVSDLFDIEGY   74 (580)
Q Consensus        13 ~~~l~~~-----~~~~~~~----~--~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~gpl~Gvp~~vKD~~~~~g~   74 (580)
                      +.+|+.+     +++.|++    +  +++||.+|||++..++.++++|+       +++..|||+||||+|||+|+|+|+
T Consensus         8 ~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~~~~~~~gpL~GiPi~vKD~~~v~g~   87 (485)
T d2f2aa1           8 VENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQAKDQMDGKLFGIPMGIKDNIITNGL   87 (485)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHTTCCCSTTTTCEEEEETTBCBTTB
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeCHHHHHHHHHHHHHHHHCCCCCCCcCcCeEEEEcccccCCC
Confidence            4556666     5555543    3  38899999999998876665543       367789999999999999999999


Q ss_pred             ccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcC
Q 008025           75 VTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAAD  154 (580)
Q Consensus        75 ~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag  154 (580)
                      +||+||++|.+  .++.+|+++|++|+++|||++||||||||+++..+.|.+||+|+||||++|+|||||||||||||+|
T Consensus        88 ~tt~Gs~~~~~--~~~~~d~~~v~~l~~~Gai~~gkt~~~e~~~~~~~~n~~~g~~~NP~~~~~~~GGSSgGsaaavA~g  165 (485)
T d2f2aa1          88 ETTCASKMLEG--FVPIYESTVMEKLHKENAVLIGKLNMDEFAMGGSTETSYFKKTVNPFDHKAVPGGSSGGSAAAVAAG  165 (485)
T ss_dssp             CCCTTCGGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCSGGGCCSSSTTCSSCCCCBTTBTTBCCCSSSHHHHHHHHTT
T ss_pred             ccCCcChhhcc--CCccccccccccccccccccccccchhhhcccccccCccccCcCCCCCcccccCCccccchhhHHhc
Confidence            99999999997  6889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCcc---------
Q 008025          155 LVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFA---------  225 (580)
Q Consensus       155 ~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~---------  225 (580)
                      ++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||+|+++|+..+++++.+.+..         
T Consensus       166 ~~~~alGtDt~GSiR~PAa~~Gl~G~kPt~G~is~~g~~~~~~~~d~~Gpmar~v~D~~~ll~~~~g~~~~d~~~~~~~~  245 (485)
T d2f2aa1         166 LVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNVKDNAIVLEAISGADVNDSTSAPVDD  245 (485)
T ss_dssp             SCSCEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSHHHHHHHHHHHBSCBTTBTTSCCCCC
T ss_pred             cCceEEecCCCchhhhhHHHhCceeecCCCCCCCCCCCCCCcccCCeeccccCCHHHHHHHHhhcccccccccccCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999988754311         


Q ss_pred             --------cCCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHH
Q 008025          226 --------AQRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKN  295 (580)
Q Consensus       226 --------~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~  295 (580)
                              ...++.||++..+...  ...++++.++++++++.|+  |++|++ +++        |.+....       .
T Consensus       246 ~~~~~~~~~~~~~lrig~~~~~~~--~~~~~~i~~a~~~a~~~L~~~G~~v~e-v~l--------p~~~~~~-------~  307 (485)
T d2f2aa1         246 VDFTSEIGKDIKGLKVALPKEYLG--EGVADDVKEAVQNAVETLKSLGAVVEE-VSL--------PNTKFGI-------P  307 (485)
T ss_dssp             CCCSTTTTCCCTTCEEEEEGGGGS--TTSCHHHHHHHHHHHHHHHHTTCEEEE-ECC--------TTGGGHH-------H
T ss_pred             cchhhhhcCCccCCEEEEEccccc--CcCCHHHHHHHHHHHHHHHHCCCEEEE-eCC--------CchhhhH-------H
Confidence                    1234567777665433  2357889999999999986  777643 222        2221110       1


Q ss_pred             HHHHHHHHHHhhhh------------------HH-HHHhhCCCCCHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHHH
Q 008025          296 VMRLIQRYEFKNNH------------------NE-WIESVKPALDPDISAEIGEM-----LEISETVIENCKSIRNEMRS  351 (580)
Q Consensus       296 ~~~~~~~~~~~~~~------------------~~-~~~~~~~~~~~~~~~~~~~g-----~~~s~~~~~~a~~~r~~~~~  351 (580)
                      .+..+...++...+                  .. +.......+.+.++.++..+     ..+...++.++.+.+..+++
T Consensus       308 ~~~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~  387 (485)
T d2f2aa1         308 SYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMSRSEGFGKEVKRRIFLGTFALSSGYYDAYYKKSQKVRTLIKN  387 (485)
T ss_dssp             HHHHHHHHHHHHHTTTCSSSSSSCCCSSCCSHHHHHHHHHHHHSCHHHHHHHHHHHHHHSTTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccccccCHHHHHHHhhhhhcCHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHH
Confidence            11111111111111                  11 11112234677777776554     44556678899999999999


Q ss_pred             HHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCCCCCcccceecccCCChHHH
Q 008025          352 AISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLL  431 (580)
Q Consensus       352 ~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll  431 (580)
                      .++++|+++|+||+||++.+||++++......... ....||.++|++|+|+++||+|..+|+|+|+|+++++++|..++
T Consensus       388 ~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~-~~~~~t~~~Nl~G~PaisvP~G~~dGlPvGlQiig~~~~D~~LL  466 (485)
T d2f2aa1         388 DFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMY-ANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLY  466 (485)
T ss_dssp             HHHHHTTTCSEEEEESSSSSCCBTTTSTTCHHHHH-GGGTTTHHHHHHTCCEEEEEEEEETTEEEEEEEECSTTCHHHHH
T ss_pred             HHHHHHccCCEEEeCCCCCCCCCcccccCCHHHHh-hhhHHHHHHHHHCCCeEEEECCCCCCCCEeEEEECCCCCHHHHH
Confidence            99999999999999999999999987654432222 22348999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 008025          432 DTVQNMYASL  441 (580)
Q Consensus       432 ~la~~le~~l  441 (580)
                      ++++.+|+..
T Consensus       467 ~~A~~~E~~~  476 (485)
T d2f2aa1         467 RVAYQYETQY  476 (485)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHhhC
Confidence            9999998654

>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Malonamidase E2
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=100.00  E-value=7.2e-79  Score=633.42  Aligned_cols=393  Identities=22%  Similarity=0.276  Sum_probs=330.0

Q ss_pred             HhhhhhhHH-----HHHHHH----h--hhccCCccceeeccccCCCCCCCCCCCCCCCCCceeeeecccccCCcccCCCC
Q 008025           12 LGLGLAGIL-----LMTKKL----K--KNIKQDFGAFIEKLQLLPPPQPLPPKAPHPLTGLSFAVSDLFDIEGYVTGFGH   80 (580)
Q Consensus        12 ~~~~l~~~~-----~~~~~~----~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~gpl~Gvp~~vKD~~~~~g~~tt~Gs   80 (580)
                      ++.+|.+++     ++.|++    +  +++||.+|||++...+      ++++..|||+||||+|||+|+|+|++||+||
T Consensus         3 s~~~l~~~~~~~~~s~~~~~~~~~~~i~~~~~~lna~~~~~~~------~~~~~~gpL~GvPi~vKD~~~v~G~~tt~Gs   76 (412)
T d1ocka_           3 SLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKS------ARAQASGPLRGIAVGIKDIIDTANMPTEMGS   76 (412)
T ss_dssp             CHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTT------CCCCSSSTTTTCEEEEETTBCCSSSCCCTTS
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCcccCChHhhhHH------hcCccCCCcCCCEEEEEcccCCCCCcccccC
Confidence            355666664     444443    3  3889999999985322      2346789999999999999999999999999


Q ss_pred             hhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCchhHHHHhcCCCcccc
Q 008025           81 PEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGTNKHYDTPTNPAAPSQMPGGSSSGAAVAVAADLVDFSL  160 (580)
Q Consensus        81 ~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~~~~~G~~~NP~~~~~~~GGSSgGsaaaVaag~~~~a~  160 (580)
                      +.|.+  ++|.+|+++|++|+++|||++||||||||+++      .+|.|+|||++.+++||||||+|++||+|++|+|+
T Consensus        77 ~~~~~--~~~~~~a~~V~~L~~aGaii~gkt~~~e~~~~------~~~~~~np~~~~~~~GgSSgG~aaava~g~~~~a~  148 (412)
T d1ocka_          77 EIYRG--WQPRSDAPVVMMLKRAGATIIGKTTTTAFASR------DPTATLNPHNTGHSPGGSSSGSAAAVGAGMIPLAL  148 (412)
T ss_dssp             GGGTT--CCCSSCCHHHHHHHHTTCEEEEEECCCGGGSS------CCCSCCBTTBTTBCCCSSSHHHHHHHHTTSCSEEE
T ss_pred             hhhhC--CCCcceeeEEeeecccccccchhhhhhhhhcc------ccccccccccccccCCCcCCCceeeeecccccccC
Confidence            99987  78999999999999999999999999999976      57889999999999999999999999999999999


Q ss_pred             ccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhcCCCccc---CCCCceEEEcc
Q 008025          161 GIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLLQLPFAA---QRSPRQIIIAD  237 (580)
Q Consensus       161 gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~~~~~~~---~~~~~~l~i~~  237 (580)
                      |||||||||+||+||||||||||+||||+.|++|++.++|++|||+|+++|++.+++++.+.+..+   +....++.+..
T Consensus       149 GsDtgGSiR~PAa~cGi~GlKPT~G~v~~~g~~~~s~~~dt~Gp~arsv~Dl~~~l~~i~g~d~~~~~~~~~~~~~~~~~  228 (412)
T d1ocka_         149 GTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARAEDLARGLLAMTGRSEFSGIVPAKAPRIGVVR  228 (412)
T ss_dssp             EEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHHCCGGGSSCCCCSSCEEEECC
T ss_pred             ccccccccccchhhhcchhcccccccccccccccccchhcccccccccHHHHHHHHHhhcCCCcccccCCcccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999987655322   33445666654


Q ss_pred             chhhhcCCChhHHHHHHHHHHHHHh--CCcccccccccccccccCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHh
Q 008025          238 DCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFDSKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES  315 (580)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (580)
                      +.+.  ...++++.+.++++++.|.  |+++++ .        ..+....      .....+..+...+.+..+..++..
T Consensus       229 ~~~~--~~~~~~v~~~~~~a~~~L~~~G~~v~e-~--------~~~~~~~------~~~~~~~~~~~~e~~~~~~~~~~~  291 (412)
T d1ocka_         229 QEFA--GAVEPAAEQGLQAAIKAAERAGASVQA-I--------DLPEAVH------EAWRIHPIIQDFEAHRALAWEFSE  291 (412)
T ss_dssp             CGGG--CCCCHHHHHHHHHHHHHHHHTTCEEEE-C--------CCCHHHH------HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             cccc--ccchhHHHHHHHHHHHHHHHhhhcccc-c--------cccchhh------hhhhhhhhhhhHHHHHHHHHhhcc
Confidence            4332  3457899999999999986  666532 1        1121110      022333444555677777777888


Q ss_pred             hCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhc
Q 008025          316 VKPALDPDISAEIGEMLEISETVIENCKSIRNEMRSAISSLLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSI  395 (580)
Q Consensus       316 ~~~~~~~~~~~~~~~g~~~s~~~~~~a~~~r~~~~~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~  395 (580)
                      ..+.+.+.++.+++.+..++..+|.++++.|..+++.+.++|+++|+||+||+|.++|..+.....       ...||.+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~~~D~ll~Pt~p~~ap~~~~~~~~-------~~~~t~~  364 (412)
T d1ocka_         292 HHDEIAPMLRASLDATVGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKALASTG-------DPRYNRL  364 (412)
T ss_dssp             SGGGSCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTTTCSEEEEESSSSSCCBGGGCCCC-------CCTTTHH
T ss_pred             ccccchhhhhhhhhhhhccccccchhhhhhHHHHHHHHHHHHcCCCEEEeCCCCCCCccccccccC-------ChHHhHH
Confidence            888899999999999999999999999999999999999999999999999999999987643221       1237999


Q ss_pred             ccccCCceeeeeCcCCCCCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025          396 ASVSGCCQVTVPLGYYDKCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (580)
Q Consensus       396 ~n~~g~P~~~~P~~~~~~lp~g~q~~~~~~~d~~ll~la~~le~~l~  442 (580)
                      +|++|+|+++||++..+|+|+|+|+++++++|..++++++.+|+++.
T Consensus       365 ~nl~G~PaisvP~g~~~GlPvGlQiig~~~~D~~lL~~A~~~E~alg  411 (412)
T d1ocka_         365 WTLMGNPCVNVPVLKVGGLPIGVQVIARFGNDAHALATAWFLEDALA  411 (412)
T ss_dssp             HHHHCCCEEEEEEEEETTEEEEEEEEECTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCeEEEeccCCCCceEeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999889999999999999999999999999998763

>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas maltophilia [TaxId: 40324]}

class: Alpha and beta proteins (a/b)
fold: Amidase signature (AS) enzymes
superfamily: Amidase signature (AS) enzymes
family: Amidase signature (AS) enzymes
domain: Peptide amidase Pam
species: Stenotrophomonas maltophilia [TaxId: 40324]

Probab=100.00  E-value=4.6e-77  Score=634.80  Aligned_cols=405  Identities=23%  Similarity=0.262  Sum_probs=302.8

Q ss_pred             hhHHHHhhhhhhHH-----HHHHHH----hh-----hccCCccceeeccccCCCCCC-------CCCCCCCCCCCceeee
Q 008025            7 NLWVLLGLGLAGIL-----LMTKKL----KK-----NIKQDFGAFIEKLQLLPPPQP-------LPPKAPHPLTGLSFAV   65 (580)
Q Consensus         7 ~~~~~~~~~l~~~~-----~~~~~~----~~-----~~~~~~~a~~~~~~~~~~~~~-------~~~~~~gpl~Gvp~~v   65 (580)
                      ++..+|+.+|++++     ++.|++    +|     ++||.||||++.+++ ++++|       ++++++|||+||||+|
T Consensus         3 ~~~~~~~~~l~~~~~~g~~s~~~~~~~~~~ri~~~~~~~~~lna~~~~~~~-a~~~A~~~d~~~~~g~~~gpL~GvP~~v   81 (490)
T d1m22a_           3 PYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPD-ALKEAAERDRERRDGRLRGPLHGIPLLL   81 (490)
T ss_dssp             TTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTT-HHHHHHHHHHHHHTTCCCSTTTTCEEEE
T ss_pred             CcccCcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhCcCCcEEEEEEcCHH-HHHHHHHHHHHHHCCCCCCCcCCCEEEE
Confidence            56677888998884     444443    22     668999999997654 44443       2477899999999999


Q ss_pred             ecccccCCcccCCCChhhhhcCCCCCCChHHHHHHHhCCCeEEEeccccccccccCCC-----CCCCCCCCCCCCCCCCC
Q 008025           66 SDLFDIEGYVTGFGHPEWARTHSAASRTSTVVSTLVEGGATCIGKTVVDEFAYSINGT-----NKHYDTPTNPAAPSQMP  140 (580)
Q Consensus        66 KD~~~~~g~~tt~Gs~~~~~~~~~~~~da~~v~~l~~aGai~~gkt~~~e~~~~~~~~-----~~~~G~~~NP~~~~~~~  140 (580)
                      ||+|+|+|++||+||+.|.+  + +++|+++|++|+++|||++||||||||+++.+|+     |.+||+|+||||++|+|
T Consensus        82 KD~~~v~g~~tt~Gs~~~~~--~-~~~da~~v~~L~~~Gai~~gkTn~~e~~~~~~t~~~~~~n~~~G~t~NP~~~~~~~  158 (490)
T d1m22a_          82 KDNINAAPMATSAGSLALQG--F-RPDDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSP  158 (490)
T ss_dssp             ETTBCCTTSCCCTTCGGGTT--C-CCCCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTTBCC
T ss_pred             EcccccCCCccCCcchhhcc--c-CCccchhhhhhhcccchhhcccccchhhhccccccccccccCCCCccCccccccCC
Confidence            99999999999999999986  4 4579999999999999999999999999998876     99999999999999999


Q ss_pred             CCCCchhHHHHhcCCCccccccCCCCcccccccccCccccccCCCccccCCCcccCCCCCcccccccCHHHHHHHHHHhc
Q 008025          141 GGSSSGAAVAVAADLVDFSLGIDTVGGVRVPSAFCGILGFRPSYGAVSHMGIIPISTSLDTVGWFARDPKILRHVGHVLL  220 (580)
Q Consensus       141 GGSSgGsaaaVaag~~~~a~gtD~gGSiR~PA~~~Gv~GlkPt~G~v~~~G~~p~~~sld~~G~~ar~~~d~~~v~~~l~  220 (580)
                      |||||||||+||+|++|+|+|||||||||+||+||||||||||+||+|+.|++|.+.++|++|||+|+++|+..+++++.
T Consensus       159 GGSSgGsaaavA~g~~~~aiGsD~gGSiR~PAa~cGl~G~KPT~G~is~~G~~~~~~~~d~~Gp~ar~v~D~~~~~~vl~  238 (490)
T d1m22a_         159 CGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSVADAAAVLTAIA  238 (490)
T ss_dssp             CSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSHHHHHHHHHHHC
T ss_pred             CCCcchHHHHHHHhhhhccccccccCCccccceecceeEEeeccCccccCCcccccCcccCCCCccccchhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCccc---------------------CCCCceEEEccchhhhcCCChhHHHHHHHHHHHHHh--CCccccccccccccc
Q 008025          221 QLPFAA---------------------QRSPRQIIIADDCFELLKIPADRVVQVVIKSTEKLF--GRQVLKHENLGEYFD  277 (580)
Q Consensus       221 ~~~~~~---------------------~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~a~~~l~--G~~vv~~~~l~~~~~  277 (580)
                      +.+..+                     ...+.++.+......    .++.+...+.++++.+.  |+.|++ +++     
T Consensus       239 ~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~a~~~l~~~g~~v~e-v~~-----  308 (490)
T d1m22a_         239 GRDDADPATATMPGRAVYDYTARLDPQGLRGKRIGLLQTPLL----KYRGMPPLIEQAATELRRAGAVVVP-VEL-----  308 (490)
T ss_dssp             CCCTTCGGGGGCTTCCCCCGGGGCCTTTTTTCEEEEECSGGG----GSTTHHHHHHHHHHHHHHTTCEEEE-ECC-----
T ss_pred             cccccCcccchhccccccchhhhccccccccccccccccccc----cccchhhhhhhhHHHHhhcccceee-ccC-----
Confidence            643211                     112233333322211    24556667777777765  776643 222     


Q ss_pred             ccCCchhhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHh---------------------hCCCCCHHHHHHHHHhhcCCH
Q 008025          278 SKVPSLKGFHKTNGELKNVMRLIQRYEFKNNHNEWIES---------------------VKPALDPDISAEIGEMLEISE  336 (580)
Q Consensus       278 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~g~~~s~  336 (580)
                         |.+....       .....+...++...+..++..                     ....+.+..............
T Consensus       309 ---p~~~~~~-------~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (490)
T d1m22a_         309 ---PNQGAWA-------EAERTLLLYEFKAGLERYFNTHRAPLRSLADLIAFNQAHSKQELGLFGQELLVEADATAGLAD  378 (490)
T ss_dssp             ---TTTTTTH-------HHHHHHHHHHHHHHHHHHHHHTTCSCCSHHHHHHHHHHTHHHHSSSSCCHHHHHHHTCCCTTC
T ss_pred             ---CchHHHH-------HHHHHHHHHHHHhhhhhHhhhcccccchHHHHHHHHHhhhhccccccchhhhHHHHHhhccch
Confidence               2222111       111112222333333333322                     223344555555555555555


Q ss_pred             HHHHHHHHHHHHHH--HHHHh--hcCCCCEEEEcCCCCCCCCCCCCCCchHHHHHHHhhhhhcccccCCceeeeeCcCCC
Q 008025          337 TVIENCKSIRNEMR--SAISS--LLKDDGILVTPTTAYPPPKLGGKEMLSEDYQNRAFSLLSIASVSGCCQVTVPLGYYD  412 (580)
Q Consensus       337 ~~~~~a~~~r~~~~--~~~~~--~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~t~~~n~~g~P~~~~P~~~~~  412 (580)
                      ..+..+.+.+.++.  ..++.  .|+++|+||+||++.++|.......       ....+|.++|++|+|+++||++..+
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~li~Pt~~~~~p~~~~~~~-------~~~~~t~~~Nl~G~PaisvP~G~~~  451 (490)
T d1m22a_         379 PAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDD-------FPGESYSAAAVAGYPSLTVPMGQID  451 (490)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---C-------CTTCCHHHHHHHTCCEEEEEEEEET
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCCccCCcCccccc-------chHHHHHHHHHhCCCEEEEECCCCC
Confidence            55555444333332  23333  4689999999999988876554311       1234788999999999999999999


Q ss_pred             CCCcccceecccCCChHHHHHHHHHHHHHH
Q 008025          413 KCPTSVSFIARHGGDRFLLDTVQNMYASLQ  442 (580)
Q Consensus       413 ~lp~g~q~~~~~~~d~~ll~la~~le~~l~  442 (580)
                      |||+|+|+++++++|..++++++.+|+..+
T Consensus       452 GLPvGlQlig~~~~D~~LL~~A~~lE~~~~  481 (490)
T d1m22a_         452 GLPVGLLFMGTAWSEPKLIEMAYAYEQRTR  481 (490)
T ss_dssp             TEEEEEEEECSTTCHHHHHHHHHHHHHHHC
T ss_pred             CCceeEEEECCCCCHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999997654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.2e-18  Score=144.78  Aligned_cols=115  Identities=32%  Similarity=0.437  Sum_probs=110.8

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      .+..++..|+.+++.|+|++|+..|+++++.+|+++.+|+++|.+|.++|++++|+++|+++++++|+++.+|+++|.++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ..+|++++|+.+|+++++++|+++.++..+++++.
T Consensus        82 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999998864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.7e-17  Score=145.97  Aligned_cols=117  Identities=38%  Similarity=0.625  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      +.++.+...|+.+++.|+|++|+..|+++++++|+++.+|+++|.+|+.+|++++|+++|+++++++|++..+|+++|.+
T Consensus         8 ~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~   87 (159)
T d1a17a_           8 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS   87 (159)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          542 REMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       542 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +..+|++++|+++|+++++++|++..++..+..+.+.
T Consensus        88 ~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          88 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888877543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.72  E-value=8e-17  Score=140.46  Aligned_cols=128  Identities=27%  Similarity=0.308  Sum_probs=115.8

Q ss_pred             cccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCHH
Q 008025          452 KLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------------ATYYSNRAAAYLESGSFL  515 (580)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----------------~~~~~~la~~~~~~~~~~  515 (580)
                      .+....++..+.+..+...|+.+++.|+|.+|+..|++++...+..                ...+.++|.||+++++++
T Consensus         5 ~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~   84 (153)
T d2fbna1           5 IYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYP   84 (153)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccc
Confidence            3445555566778889999999999999999999999999875542                247889999999999999


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          516 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       516 ~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      +|+++|+++|+++|++.++|+++|.+|..+|++++|+.+|+++++++|+|..+...+..+.+.+
T Consensus        85 ~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          85 KAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999988765

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.8e-16  Score=140.84  Aligned_cols=125  Identities=26%  Similarity=0.335  Sum_probs=113.8

Q ss_pred             ccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHH
Q 008025          455 TNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQAEA  519 (580)
Q Consensus       455 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A~~  519 (580)
                      ....+....+..+.+.|+.+++.|+|++|+..|+++++..|..               ..++.++|.||+++|+|++|++
T Consensus         4 ~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~   83 (170)
T d1p5qa1           4 MNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIE   83 (170)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccc
Confidence            3444455668888999999999999999999999999987753               3567899999999999999999


Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          520 DCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       520 ~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      +++++|+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|+++.+...+..+.+.+
T Consensus        84 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          84 SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999887653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.68  E-value=5.3e-16  Score=137.50  Aligned_cols=127  Identities=28%  Similarity=0.392  Sum_probs=114.0

Q ss_pred             ccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHH
Q 008025          453 LSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN---------------ATYYSNRAAAYLESGSFLQA  517 (580)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~---------------~~~~~~la~~~~~~~~~~~A  517 (580)
                      |.....+..+.+..+...|+.+++.|+|.+|+..|++++...+..               ..++.++|.||+++++|++|
T Consensus         4 ~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~A   83 (168)
T d1kt1a1           4 WEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKA   83 (168)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccc
Confidence            344455556778899999999999999999999999999864442               35688999999999999999


Q ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          518 EADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       518 ~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      +++++++++++|++..+|+++|.+|..+|+|++|+++|+++++++|+++.+...++.+...+
T Consensus        84 i~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          84 VECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998887553

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.2e-16  Score=146.02  Aligned_cols=104  Identities=36%  Similarity=0.488  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      .+..+.+.|+.+++.|+|++|+..|+++++++|+++.+|+++|.||.++|+|++|+++|+++++++|+++.+|+++|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                      ..+|++++|+.+|+++++++|++.
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999988543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=1.6e-15  Score=134.58  Aligned_cols=118  Identities=25%  Similarity=0.358  Sum_probs=108.5

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKL----------------NGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  525 (580)
                      ..+..+...|+.++..|+|.+|+..|+++++.                +|....++.++|.+|.++++|++|+++|+++|
T Consensus        25 ~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al  104 (169)
T d1ihga1          25 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL  104 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            34556778999999999999999999999864                45567789999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          526 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       526 ~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      +++|+++.+|+++|.+|..+|++++|+++|+++++++|++..+...+..+.+.+
T Consensus       105 ~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1         105 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.6e-15  Score=126.42  Aligned_cols=116  Identities=34%  Similarity=0.480  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-------HHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNV-------KAY  535 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~-------~a~  535 (580)
                      .+..+.++|+.++..|+|++|+.+|+++++++|++..+++++|.+|.++|+|++|+++|+++++++|++.       .+|
T Consensus         3 ~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            5677889999999999999999999999999999999999999999999999999999999999998764       477


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      +++|.++..++++++|+++|++++..+++ ++....+..+.+.+
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~l  125 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKIL  125 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHH
Confidence            88889999999999999999999999874 67777777776654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=4e-15  Score=141.24  Aligned_cols=116  Identities=19%  Similarity=0.112  Sum_probs=110.4

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      ++..+..++.+|.++++.|+|++|+..|+++++++|+++.+|+++|.+|.++|++++|+++|+++++++|+++.+++++|
T Consensus        33 ~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  112 (259)
T d1xnfa_          33 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          540 TAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      .+|..+|++++|++.|+++++++|++......+...
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~  148 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  148 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            999999999999999999999999998877666544

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.5e-16  Score=127.70  Aligned_cols=112  Identities=13%  Similarity=0.032  Sum_probs=102.8

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--HHHHHHHHHHH
Q 008025          468 KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG---SFLQAEADCTKAINLDKKN--VKAYLRRGTAR  542 (580)
Q Consensus       468 ~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~l~p~~--~~a~~~lg~~~  542 (580)
                      .++++.+...+++++|.+.|+++++++|+++.+++++|+++++.+   ++++|++.|+++++.+|++  ..+++++|.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999998754   5668999999999998865  45899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      .++|+|++|+++|+++++++|++..+...+..|.+.+
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.58  E-value=7.6e-15  Score=120.27  Aligned_cols=95  Identities=14%  Similarity=0.012  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM  544 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~  544 (580)
                      ..++.+|..++++|++++|+..|+++++.+|+++.+|+.+|.++.+++++++|+.+|+++++++|++..+|+++|.+|..
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            44688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHH
Q 008025          545 LGYYKEAIEDFSYAL  559 (580)
Q Consensus       545 ~g~~~~A~~~~~~al  559 (580)
                      +|++++|++++++.|
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999999986

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.7e-15  Score=143.53  Aligned_cols=131  Identities=10%  Similarity=-0.039  Sum_probs=120.8

Q ss_pred             HhhhccccccchhchHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          447 IATKSKLSTNTFNQKQSAEIAKEKGNQAYKDK-QWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (580)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  525 (580)
                      ..+...+...+..+|++..+|+.+|.++...+ ++++|+..|+++++++|++..+|+++|.++..+|++++|++++++++
T Consensus        60 ~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal  139 (315)
T d2h6fa1          60 ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL  139 (315)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhh
Confidence            44445566677788999999999999999876 59999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          526 NLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       526 ~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      +++|++..+|+++|.++..++++++|+++|+++++++|++..+|..++.+..
T Consensus       140 ~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~  191 (315)
T d2h6fa1         140 NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  191 (315)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998887644

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.4e-14  Score=139.36  Aligned_cols=129  Identities=18%  Similarity=0.100  Sum_probs=120.5

Q ss_pred             ccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025          451 SKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~  530 (580)
                      ..+......+|+....++.+|..+...|++++|++.|++++...|.+...+..++.++..+|++++|++.|+++++++|+
T Consensus       258 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  337 (388)
T d1w3ba_         258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE  337 (388)
T ss_dssp             HHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            33344445567888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ++.+++++|.+|..+|++++|+++|+++++++|+++.++..++.+.+.+
T Consensus       338 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999988765

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.51  E-value=4.1e-14  Score=121.52  Aligned_cols=106  Identities=18%  Similarity=0.106  Sum_probs=96.5

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----------GSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       473 ~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~----------~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      .+-+.+.|++|+..|+++++++|+++.+++++|.++..+          +++++|+++|+++++++|+++.+|+++|.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            355678899999999999999999999999999999855          4568999999999999999999999999999


Q ss_pred             HHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          543 EMLGY-----------YKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       543 ~~~g~-----------~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ..+|+           |++|.++|+++++++|++...+..|+...+.
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka  132 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA  132 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence            88754           7999999999999999999999999887654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3e-13  Score=122.11  Aligned_cols=104  Identities=17%  Similarity=0.125  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----------  531 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----------  531 (580)
                      .++..++++|.+++..|+|++|++.|+++++++|+++.+|+++|.+|.++|+|++|+++|+++++..+.+          
T Consensus        34 ~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~  113 (192)
T d1hh8a_          34 PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL  113 (192)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred             CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhh
Confidence            3567899999999999999999999999999999999999999999999999999999999999876543          


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 008025          532 ------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTN  565 (580)
Q Consensus       532 ------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  565 (580)
                            .++++++|.++.++|++++|.+.|++++++.|+.
T Consensus       114 ~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence                  4789999999999999999999999999998874

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3e-13  Score=122.11  Aligned_cols=100  Identities=26%  Similarity=0.288  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      ++..+++.|..++.+|+|++|++.|.++   .+.++.+|+++|.+|..+|++++|+++|+++++++|+++.+|+++|.++
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~   80 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY   80 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            3456778999999999999999999864   5677899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCC
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTN  565 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~  565 (580)
                      .++|+|++|+++|+++++..+.+
T Consensus        81 ~~~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          81 YQTEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTC
T ss_pred             HhhccHHHHHHHHHHHHHhCccC
Confidence            99999999999999999876654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.3e-13  Score=135.00  Aligned_cols=121  Identities=17%  Similarity=0.113  Sum_probs=115.4

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESG-SFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      -+|+..+++..+|.++.+++++++|++.|+++++++|++..+|+++|.++..++ ++++|+++++++++++|++..+|++
T Consensus        38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~  117 (315)
T d2h6fa1          38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH  117 (315)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            457888999999999999999999999999999999999999999999999987 5999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          538 RGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       538 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      +|.++..+|++++|+++++++++++|++..+|..++.+...+
T Consensus       118 ~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~  159 (315)
T d2h6fa1         118 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF  159 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999887654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.4e-13  Score=134.84  Aligned_cols=108  Identities=19%  Similarity=0.228  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      .+..++.+|..+...|++++|+..|++++..+|+++.+|+++|.+|..+|++++|+++|+++++++|+++.+|+++|.+|
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  250 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISC  250 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNKRASL  570 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~~~~~  570 (580)
                      ..+|++++|+++|+++++++|++...+.
T Consensus       251 ~~~g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         251 INLGAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             HHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence            9999999999999999999999876543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.38  E-value=3.2e-13  Score=117.58  Aligned_cols=103  Identities=20%  Similarity=0.166  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKK-  530 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~-  530 (580)
                      +..++..|+.+++.|+|++|+..|++++++.|+.            +.+|+++|.+|.++|+|++|++++++++++.|. 
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            3444556999999999999999999999998764            468999999999999999999999999988542 


Q ss_pred             ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          531 ----------NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       531 ----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                                ...+++++|.+|..+|++++|+++|++++++.|+..
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence                      345789999999999999999999999999976543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=5.4e-12  Score=119.11  Aligned_cols=122  Identities=16%  Similarity=0.069  Sum_probs=108.9

Q ss_pred             HHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 008025          446 DIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAI  525 (580)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  525 (580)
                      ...+...+...+..+|+.+.+++.+|.++.+.|++++|++.|+++++++|++..+++++|.+|..+|++++|++.|++++
T Consensus        53 ~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  132 (259)
T d1xnfa_          53 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY  132 (259)
T ss_dssp             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            34444555666667789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCC----------------------------------------------------------------------HHHH
Q 008025          526 NLDKKN----------------------------------------------------------------------VKAY  535 (580)
Q Consensus       526 ~l~p~~----------------------------------------------------------------------~~a~  535 (580)
                      +++|++                                                                      ..+|
T Consensus       133 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (259)
T d1xnfa_         133 QDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETN  212 (259)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             hhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHH
Confidence            998741                                                                      2378


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  567 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  567 (580)
                      +++|.+|..+|++++|+++|+++++.+|++..
T Consensus       213 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  244 (259)
T d1xnfa_         213 FYLGKYYLSLGDLDSATALFKLAVANNVHNFV  244 (259)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence            88999999999999999999999999998743

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5e-12  Score=125.72  Aligned_cols=122  Identities=21%  Similarity=0.158  Sum_probs=115.3

Q ss_pred             chhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Q 008025          457 TFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYL  536 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~  536 (580)
                      ....+.....+..+|..+++.|++++|+..|+++++++|++..+++++|.++..++++++|++.++++++..|.+...++
T Consensus       230 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  309 (388)
T d1w3ba_         230 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN  309 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhh
Confidence            33456677889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          537 RRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       537 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      .++.++..+|++++|+++|+++++++|+++.++..++.+...
T Consensus       310 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  351 (388)
T d1w3ba_         310 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.5e-12  Score=103.69  Aligned_cols=101  Identities=13%  Similarity=0.019  Sum_probs=91.2

Q ss_pred             HHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025          442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC  521 (580)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  521 (580)
                      .......+...+...+..+|..+..+..+|.++++.|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|
T Consensus        15 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~   94 (117)
T d1elwa_          15 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTY   94 (117)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHH
Confidence            34444555566666677789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHH
Q 008025          522 TKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       522 ~~al~l~p~~~~a~~~lg~~~  542 (580)
                      +++++++|++..++..++.+.
T Consensus        95 ~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          95 EEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHh
Confidence            999999999999999988764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.4e-11  Score=118.56  Aligned_cols=78  Identities=17%  Similarity=0.126  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          501 YSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       501 ~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +..+|.++..+|++++|++.|+++++.+|+++.+|+++|.+|..+|++++|+++|+++++++|+++.++..++.+...
T Consensus       175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            445555556666666666666666666666666666777777777777777777777777777777666666665543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=9.3e-12  Score=98.01  Aligned_cols=77  Identities=17%  Similarity=0.156  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          465 EIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-------ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       465 ~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      +.++++|..++++|+|.+|+..|++++++.|.+       ..++.++|.+|.++|++++|+++|+++|+++|++..++.+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            445566666666666666666666666554332       4455555555555555555555555555555555555555


Q ss_pred             HHHH
Q 008025          538 RGTA  541 (580)
Q Consensus       538 lg~~  541 (580)
                      ++..
T Consensus        86 l~~~   89 (95)
T d1tjca_          86 LKYF   89 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.28  E-value=2.3e-11  Score=107.06  Aligned_cols=95  Identities=18%  Similarity=0.141  Sum_probs=88.2

Q ss_pred             hhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 008025          458 FNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLR  537 (580)
Q Consensus       458 ~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~  537 (580)
                      ..++.....+.++|.++++.|+|++|+..|+++++++|+++.+|+++|.+|..+|++++|+++|+++++++|++..++..
T Consensus        71 ~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1          71 KLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34577888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHH
Q 008025          538 RGTAREMLGYYKEAI  552 (580)
Q Consensus       538 lg~~~~~~g~~~~A~  552 (580)
                      ++.+...+.++.++.
T Consensus       151 l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         151 LLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999988777666654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1e-11  Score=97.73  Aligned_cols=83  Identities=14%  Similarity=0.056  Sum_probs=76.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025          497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN-------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS  569 (580)
Q Consensus       497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  569 (580)
                      +++-++++|.++++.|+|++|+++|++|+++.|.+       ..++.++|.++.++|++++|+++|+++++++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            35678999999999999999999999999996543       67999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 008025          570 LSADRLRKVF  579 (580)
Q Consensus       570 ~~l~~l~~~~  579 (580)
                      .+++.+++.+
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.6e-11  Score=105.57  Aligned_cols=113  Identities=16%  Similarity=0.120  Sum_probs=97.6

Q ss_pred             HHhHHHhhhccccccchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025          442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADC  521 (580)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  521 (580)
                      ...+...+...+......+|.....|+.+|.+++..|++++|+..|+++++++|++..+|+++|.++..+|++++|+++|
T Consensus        22 ~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~  101 (159)
T d1a17a_          22 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDY  101 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34445556666677777889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHH--HcCCHHHHHHH
Q 008025          522 TKAINLDKKNVKAYLRRGTARE--MLGYYKEAIED  554 (580)
Q Consensus       522 ~~al~l~p~~~~a~~~lg~~~~--~~g~~~~A~~~  554 (580)
                      +++++++|++..++..++.+..  ..+.+++|+..
T Consensus       102 ~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_         102 ETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999988877754  33445555544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.14  E-value=1.9e-10  Score=93.42  Aligned_cols=80  Identities=11%  Similarity=0.043  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          499 TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       499 ~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ..++++|.++++.|++++|+..|+++++++|+++.+|+++|.++..++++++|+.+|+++++++|++..++..++.+...
T Consensus        17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999987654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.6e-11  Score=98.51  Aligned_cols=104  Identities=11%  Similarity=0.023  Sum_probs=86.4

Q ss_pred             HHhHHHhhhccccccchhchHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHH
Q 008025          442 QEQADIATKSKLSTNTFNQKQSAEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNN--ATYYSNRAAAYLESGSFLQ  516 (580)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~~Ai~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~  516 (580)
                      ..++...+...+......+|....+++++|.++++.   +++++|+..|+++++.+|++  ..+++++|.+|.++|+|++
T Consensus        11 ~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~   90 (122)
T d1nzna_          11 SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   90 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHH
Confidence            333444444555666667789999999999999874   45678999999999988765  5689999999999999999


Q ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 008025          517 AEADCTKAINLDKKNVKAYLRRGTAREML  545 (580)
Q Consensus       517 A~~~~~~al~l~p~~~~a~~~lg~~~~~~  545 (580)
                      |+++|+++++++|++..+...++.+..++
T Consensus        91 A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          91 ALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999988776544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.12  E-value=1.7e-10  Score=99.51  Aligned_cols=85  Identities=19%  Similarity=0.146  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      ....+.++|.++++.|+|++|++.|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..+...+..+.
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34577889999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             HHcCC
Q 008025          543 EMLGY  547 (580)
Q Consensus       543 ~~~g~  547 (580)
                      .++++
T Consensus       146 ~kl~~  150 (153)
T d2fbna1         146 NKLKE  150 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.12  E-value=3.6e-10  Score=99.04  Aligned_cols=96  Identities=18%  Similarity=0.130  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      .....+.++|.++++.++|++|+..++++++++|++..+++++|.+|..+|+|++|+++|+++++++|++..++..++.+
T Consensus        62 ~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~  141 (168)
T d1kt1a1          62 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC  141 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHH-HHHHHHH
Q 008025          542 REMLGYYKE-AIEDFSY  557 (580)
Q Consensus       542 ~~~~g~~~~-A~~~~~~  557 (580)
                      ....+++.+ ..+.|.+
T Consensus       142 ~~~~~~~~e~~kk~~~~  158 (168)
T d1kt1a1         142 QKKAKEHNERDRRTYAN  158 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHH
Confidence            887776654 3344333

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=2.1e-10  Score=103.50  Aligned_cols=83  Identities=16%  Similarity=0.126  Sum_probs=78.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 008025          497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLR  576 (580)
Q Consensus       497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~  576 (580)
                      +...+...|..|++.|+|++|++.|+++|+++|+++.+|+++|.+|.++|+|++|+++|+++++++|++..++..++.+.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhh
Q 008025          577 KVF  579 (580)
Q Consensus       577 ~~~  579 (580)
                      ..+
T Consensus        83 ~~l   85 (201)
T d2c2la1          83 LEM   85 (201)
T ss_dssp             HHT
T ss_pred             HHC
Confidence            654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5.3e-10  Score=98.17  Aligned_cols=90  Identities=21%  Similarity=0.144  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          463 SAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       463 ~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      ....+.++|.++++.|+|++|+..++++++++|++..+++.+|.+|..+|+|++|+++|+++++++|++..+...++.++
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45567789999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHcCCHHHHH
Q 008025          543 EMLGYYKEAI  552 (580)
Q Consensus       543 ~~~g~~~~A~  552 (580)
                      ..+.++.+..
T Consensus       141 ~~~~~~~~~e  150 (170)
T d1p5qa1         141 QRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8777666554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.09  E-value=1.2e-09  Score=96.53  Aligned_cols=104  Identities=13%  Similarity=0.048  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCCHHHHH
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----------------------ATYYSNRAAAYLESGSFLQAE  518 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----------------------~~~~~~la~~~~~~~~~~~A~  518 (580)
                      ....+.++..|......|++++|++.|.+++++.+.+                      ..++.+++.++.++|++++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            4567889999999999999999999999999997653                      267899999999999999999


Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCCC
Q 008025          519 ADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYA-------LVLEPT  564 (580)
Q Consensus       519 ~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-------l~l~p~  564 (580)
                      .+++++++++|.+..+|.+++.+|..+|++.+|++.|+++       +-++|.
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            9999999999999999999999999999999999999998       446775

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.09  E-value=3.5e-10  Score=96.42  Aligned_cols=95  Identities=15%  Similarity=0.050  Sum_probs=81.7

Q ss_pred             chhchHHHHHHHHHHHHHHH----------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----------HH
Q 008025          457 TFNQKQSAEIAKEKGNQAYK----------DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS-----------FL  515 (580)
Q Consensus       457 ~~~~~~~~~~~~~~g~~~~~----------~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~-----------~~  515 (580)
                      ...+|+++.+++.+|.++..          .+++++|+..|+++++++|+++.+|+++|.+|..+|+           |+
T Consensus        24 l~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~  103 (145)
T d1zu2a1          24 YKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFD  103 (145)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHH
Confidence            34567999999999999985          4556899999999999999999999999999988764           79


Q ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 008025          516 QAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEA  551 (580)
Q Consensus       516 ~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A  551 (580)
                      +|+++|+++++++|++..++..++.+....+.+.++
T Consensus       104 ~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         104 LATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999887555444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.8e-10  Score=118.18  Aligned_cols=121  Identities=11%  Similarity=-0.056  Sum_probs=85.6

Q ss_pred             cchhchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Q 008025          456 NTFNQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAY  535 (580)
Q Consensus       456 ~~~~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~  535 (580)
                      ....+++....+.++|..+.+.+++++|+..|.+++..++.  .++.++|.++...++|++|+++|++|++++|++..+|
T Consensus       112 ~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~  189 (497)
T d1ya0a1         112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPY  189 (497)
T ss_dssp             -------------------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHH
T ss_pred             HHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHH
Confidence            33445778888999999999999999999999999988764  6889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          536 LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       536 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      +++|.++...|++.+|+.+|.+++..+|..+.++.+|..+.+.
T Consensus       190 ~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         190 NQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=4.3e-10  Score=93.68  Aligned_cols=78  Identities=17%  Similarity=0.078  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 008025          498 ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       498 ~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l  575 (580)
                      +..+.++|..++..++|++|+++|+++|+++|++..+++++|.+|.++|+|++|+++|+++++++|++...+..++.+
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~   81 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA   81 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            345678999999999999999999999999999999999999999999999999999999999999887766555443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.95  E-value=4.5e-09  Score=102.83  Aligned_cols=129  Identities=11%  Similarity=0.036  Sum_probs=111.4

Q ss_pred             ccccccchhchHHHHHHHHHHHHHHH----------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--HHHHH
Q 008025          451 SKLSTNTFNQKQSAEIAKEKGNQAYK----------DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGS--FLQAE  518 (580)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~g~~~~~----------~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~  518 (580)
                      ..+......+|+...+|..++..+..          .+++.+|+..|+++++.+|++..+|+.+|.++..+++  +++|+
T Consensus        50 ~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~  129 (334)
T d1dcea1          50 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL  129 (334)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHH
Confidence            33445556778888888776666554          4458999999999999999999999999999988875  89999


Q ss_pred             HHHHHHHHcCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhh
Q 008025          519 ADCTKAINLDKKNVKAY-LRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRKVF  579 (580)
Q Consensus       519 ~~~~~al~l~p~~~~a~-~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~~  579 (580)
                      ..++++++++|++..++ +.+|.++...+++++|+++++++++++|++..++..++.+...+
T Consensus       130 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~  191 (334)
T d1dcea1         130 ELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (334)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            99999999999999986 56788999999999999999999999999999999999887654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=2.4e-09  Score=104.78  Aligned_cols=115  Identities=15%  Similarity=0.021  Sum_probs=86.6

Q ss_pred             hHHHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------------------------
Q 008025          461 KQSAEIA-KEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLES----------------------------  511 (580)
Q Consensus       461 ~~~~~~~-~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~----------------------------  511 (580)
                      +.....+ ...|..+...+++++|+..++++++.+|++..+|+++|.++..+                            
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  219 (334)
T d1dcea1         140 ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF  219 (334)
T ss_dssp             TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHH
Confidence            3333433 34556666666666666666666666666666666666665544                            


Q ss_pred             ------------------------------------CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 008025          512 ------------------------------------GSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDF  555 (580)
Q Consensus       512 ------------------------------------~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~  555 (580)
                                                          +++.+|++.+.++++.+|++..+++.+|.++..+|++++|+++|
T Consensus       220 ~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~  299 (334)
T d1dcea1         220 FTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF  299 (334)
T ss_dssp             HHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH
T ss_pred             HhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                                                55667777777778888888999999999999999999999999


Q ss_pred             HHHHhhCCCCHHHHHHHHHH
Q 008025          556 SYALVLEPTNKRASLSADRL  575 (580)
Q Consensus       556 ~~al~l~p~~~~~~~~l~~l  575 (580)
                      +++++++|.+...|..++..
T Consensus       300 ~~ai~ldP~~~~y~~~L~~~  319 (334)
T d1dcea1         300 STLKAVDPMRAAYLDDLRSK  319 (334)
T ss_dssp             HHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHCcccHHHHHHHHHH
Confidence            99999999999998877553

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=2.1e-08  Score=95.86  Aligned_cols=107  Identities=13%  Similarity=0.094  Sum_probs=93.3

Q ss_pred             chHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCC--
Q 008025          460 QKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN------ATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKK--  530 (580)
Q Consensus       460 ~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~------~~~~~~la~~~~~-~~~~~~A~~~~~~al~l~p~--  530 (580)
                      .+..+..+.+.|+++.+.|++++|++.|++++++.+..      ..++.++|.+|.. ++++++|+++|++++++.+.  
T Consensus        73 ~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~  152 (290)
T d1qqea_          73 EDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ  152 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34567889999999999999999999999999986554      6788899998865 69999999999999988542  


Q ss_pred             ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 008025          531 ----NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNK  566 (580)
Q Consensus       531 ----~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~  566 (580)
                          ...++.++|.++..+|+|++|++.|+++++..+.+.
T Consensus       153 ~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence                255789999999999999999999999999988765

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.73  E-value=2.8e-08  Score=93.13  Aligned_cols=95  Identities=19%  Similarity=0.120  Sum_probs=60.1

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---------------------
Q 008025          473 QAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN---------------------  531 (580)
Q Consensus       473 ~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~---------------------  531 (580)
                      ..+++|++++|+..|+++++.+|++..++.+++.+|+..|++++|++.|+++++++|++                     
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            34455556666666666666666666666666666666666666666666655555543                     


Q ss_pred             --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 008025          532 --------------VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKR  567 (580)
Q Consensus       532 --------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  567 (580)
                                    ...++..+.++...|++++|.+.++++.++.|+.+.
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~  134 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  134 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence                          345555666667778888888888888888877643

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=7.2e-08  Score=77.24  Aligned_cols=82  Identities=13%  Similarity=-0.036  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 008025          498 ATYYSNRAAAYLESGS---FLQAEADCTKAINLDKKN-VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSAD  573 (580)
Q Consensus       498 ~~~~~~la~~~~~~~~---~~~A~~~~~~al~l~p~~-~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~  573 (580)
                      ....++.|+++.+..+   .++++..++++++.+|.+ .+++|++|++|+++|+|++|.++++++++++|+|..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            6788899999987754   568999999999988866 479999999999999999999999999999999999998888


Q ss_pred             HHHhhh
Q 008025          574 RLRKVF  579 (580)
Q Consensus       574 ~l~~~~  579 (580)
                      .|++.+
T Consensus       115 ~Ie~~~  120 (124)
T d2pqrb1         115 MVEDKI  120 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            887764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=4.6e-08  Score=93.41  Aligned_cols=102  Identities=16%  Similarity=0.136  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----
Q 008025          462 QSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNG------NNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----  531 (580)
Q Consensus       462 ~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----  531 (580)
                      .-++.|...|+.|...++|++|++.|.+++++..      ....++.++|.+|.+++++++|+++|++++++.+..    
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~  114 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR  114 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch
Confidence            4467788999999999999999999999999732      235789999999999999999999999999987654    


Q ss_pred             --HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Q 008025          532 --VKAYLRRGTAREM-LGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       532 --~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~p  563 (580)
                        ..++.++|.+|.. .+++++|+++|++++++.+
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence              5688899988865 6999999999999998854

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=5.4e-07  Score=87.12  Aligned_cols=104  Identities=13%  Similarity=0.052  Sum_probs=91.5

Q ss_pred             hchHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--
Q 008025          459 NQKQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN-----ATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN--  531 (580)
Q Consensus       459 ~~~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~--  531 (580)
                      +++..++....+|.+++..|++++|+..|+++++..|++     ..++..+|.+|..+|++++|++.|++++++.+..  
T Consensus         7 ~~~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~   86 (366)
T d1hz4a_           7 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV   86 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccchhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence            344567777889999999999999999999999999886     4588899999999999999999999999985432  


Q ss_pred             ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 008025          532 ----VKAYLRRGTAREMLGYYKEAIEDFSYALVLE  562 (580)
Q Consensus       532 ----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  562 (580)
                          ..++++++.++...+++.+|...+.+++++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                4578889999999999999999999999764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.8e-07  Score=93.18  Aligned_cols=83  Identities=19%  Similarity=0.067  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTARE  543 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~  543 (580)
                      ...+..+|..+...++|++|+.+|+++++++|++..+|++||.+|...|++.+|+.+|.|++.++|.++.++.+++.++.
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            45788899999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HcC
Q 008025          544 MLG  546 (580)
Q Consensus       544 ~~g  546 (580)
                      +..
T Consensus       232 ~~~  234 (497)
T d1ya0a1         232 KAL  234 (497)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=7.6e-07  Score=71.14  Aligned_cols=80  Identities=8%  Similarity=0.011  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKD---KQWLKAISFYTEAIKLNGNNA-TYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       464 ~~~~~~~g~~~~~~---g~~~~Ai~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      .+..|+.|.++.+.   .+.+++|..++++++.+|.+. +++++||..|+++|+|++|.++++++|+++|+|..+...+-
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            46778888888755   456799999999999998764 89999999999999999999999999999999999987776


Q ss_pred             HHHH
Q 008025          540 TARE  543 (580)
Q Consensus       540 ~~~~  543 (580)
                      .+..
T Consensus       115 ~Ie~  118 (124)
T d2pqrb1         115 MVED  118 (124)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=8.4e-06  Score=77.88  Aligned_cols=114  Identities=9%  Similarity=-0.150  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE-SGSFLQAEADCTKAINLDKKNVKAYLRRGTAR  542 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~  542 (580)
                      ...|...+....+.++++.|.+.|.++++..|.+...+...+..... .++.+.|.+.|+++++.+|+++..|...+..+
T Consensus       134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~  213 (308)
T d2onda1         134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  213 (308)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            44678888888899999999999999999999988888888876544 57899999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHh
Q 008025          543 EMLGYYKEAIEDFSYALVLEPTNK----RASLSADRLRK  577 (580)
Q Consensus       543 ~~~g~~~~A~~~~~~al~l~p~~~----~~~~~l~~l~~  577 (580)
                      ...|++++|+..|+++++..|.++    ..|......++
T Consensus       214 ~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~  252 (308)
T d2onda1         214 SHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  252 (308)
T ss_dssp             HTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            999999999999999999877553    45665555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=2.6e-06  Score=82.04  Aligned_cols=103  Identities=17%  Similarity=-0.029  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNN----ATYYSNRAAAYLESGSFLQAEADCTKAINL------DKK  530 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~l------~p~  530 (580)
                      +.....+...+..+...+++++|+..+.++++..+.+    ...+.++|.+|..+|++++|++.+++++..      .|.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (366)
T d1hz4a_         210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD  289 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence            4556778889999999999999999999999887654    567888999999999999999999999854      456


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 008025          531 NVKAYLRRGTAREMLGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       531 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p  563 (580)
                      ...++..+|.+|..+|++++|++.+++++++.+
T Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            678999999999999999999999999999854

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.27  E-value=1.5e-06  Score=74.23  Aligned_cols=70  Identities=13%  Similarity=-0.005  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 008025          461 KQSAEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGN-----------NATYYSNRAAAYLESGSFLQAEADCTKAINLDK  529 (580)
Q Consensus       461 ~~~~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p  529 (580)
                      ...+..+.++|.++.+.|+|++|+..|++++++.|.           ...+++++|.+|..+|++++|+++|++++++.|
T Consensus        52 ~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          52 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            345778999999999999999999999999987542           245789999999999999999999999999966


Q ss_pred             C
Q 008025          530 K  530 (580)
Q Consensus       530 ~  530 (580)
                      .
T Consensus       132 ~  132 (156)
T d2hr2a1         132 E  132 (156)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=1e-05  Score=77.31  Aligned_cols=118  Identities=7%  Similarity=-0.026  Sum_probs=96.8

Q ss_pred             cccccchhchHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 008025          452 KLSTNTFNQKQSAEIAKEKGNQAY-KDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKK  530 (580)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~  530 (580)
                      .+.......+.....+...+.... ..|+.+.|...|+++++..|++...|...+..+...|++++|...|+++++..|.
T Consensus       156 i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         156 IFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            333444445666677777777654 4689999999999999999999999999999999999999999999999998775


Q ss_pred             C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 008025          531 N----VKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRAS  569 (580)
Q Consensus       531 ~----~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  569 (580)
                      +    ...|......-...|+.+.+.+.++++.++.|++....
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~~  278 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGK  278 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSSC
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccccc
Confidence            4    34666666666788999999999999999999876543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.16  E-value=2.4e-06  Score=79.57  Aligned_cols=72  Identities=19%  Similarity=0.088  Sum_probs=66.6

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          506 AAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREMLGYYKEAIEDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       506 ~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      .-.++.|++++|++.|+++++.+|++..++.+++.+|...|++++|++.|+++++++|++..++..++.+..
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK   75 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999999999999999999999999999988877643

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.05  E-value=4e-05  Score=70.99  Aligned_cols=97  Identities=19%  Similarity=0.197  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 008025          464 AEIAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRG  539 (580)
Q Consensus       464 ~~~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~lg  539 (580)
                      +.+++.+|..+++++||++|+++|+++.+.  ++..++++||.+|..    ..++.+|..+++++.+.  +++.+.+++|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccc
Confidence            568999999999999999999999999875  588999999999998    67999999999998874  4788899999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHhhCCC
Q 008025          540 TAREM----LGYYKEAIEDFSYALVLEPT  564 (580)
Q Consensus       540 ~~~~~----~g~~~~A~~~~~~al~l~p~  564 (580)
                      ..+..    ..+.++|...++++.+..+.
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhh
Confidence            88876    46899999999999887554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=1.8e-05  Score=68.83  Aligned_cols=82  Identities=13%  Similarity=0.009  Sum_probs=73.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 008025          497 NATYYSNRAAAYLESGSFLQAEADCTKAINLDKKN----------------------VKAYLRRGTAREMLGYYKEAIED  554 (580)
Q Consensus       497 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~----------------------~~a~~~lg~~~~~~g~~~~A~~~  554 (580)
                      ....+.+.|......|++++|++.|.+++++.++.                      ..++.+++.++..+|++++|+.+
T Consensus        10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~   89 (179)
T d2ff4a2          10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence            35788899999999999999999999999997643                      25789999999999999999999


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          555 FSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       555 ~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ++++++++|.+..++..+..+...
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~  113 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYL  113 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHH
Confidence            999999999999999998887543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.78  E-value=6.5e-05  Score=69.53  Aligned_cols=110  Identities=23%  Similarity=0.176  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHH
Q 008025          463 SAEIAKEKGNQAYK----DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKA  534 (580)
Q Consensus       463 ~~~~~~~~g~~~~~----~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~a  534 (580)
                      ....++.+|..+..    ..+...+...++++.+  ..+..+++++|.+|..    ..++++|+++|+++.+.  +++.+
T Consensus       141 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a  216 (265)
T d1ouva_         141 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGG  216 (265)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred             ccchhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHH
Confidence            44567888888886    5677888888888875  4688999999999987    67999999999999987  57999


Q ss_pred             HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Q 008025          535 YLRRGTAREM----LGYYKEAIEDFSYALVLEPTNKRASLSADRLRKV  578 (580)
Q Consensus       535 ~~~lg~~~~~----~g~~~~A~~~~~~al~l~p~~~~~~~~l~~l~~~  578 (580)
                      ++++|.+|..    ..++++|.++|+++.++.  +..+...|..|...
T Consensus       217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~A~~~l~~l~~~  262 (265)
T d1ouva_         217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGACDILKQLKIK  262 (265)
T ss_dssp             HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHHHHHHTCCCC
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHHHHHHHHHHHHH
Confidence            9999999986    458999999999999886  45566666665443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.73  E-value=0.00021  Score=58.46  Aligned_cols=92  Identities=17%  Similarity=0.109  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 008025          466 IAKEKGNQAYKDKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLE----SGSFLQAEADCTKAINLDKKNVKAYLRRGTA  541 (580)
Q Consensus       466 ~~~~~g~~~~~~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~  541 (580)
                      .++.++.  ....++++|+..|+++.+.  .++.+++.||..|..    ..++++|+++|+++.+.  .++.+.+++|.+
T Consensus        27 a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~  100 (133)
T d1klxa_          27 GCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYK  100 (133)
T ss_dssp             HHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             hhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHH
Confidence            3444443  3567899999999999875  688999999999986    56899999999999885  578999999999


Q ss_pred             HHH----cCCHHHHHHHHHHHHhhCC
Q 008025          542 REM----LGYYKEAIEDFSYALVLEP  563 (580)
Q Consensus       542 ~~~----~g~~~~A~~~~~~al~l~p  563 (580)
                      |..    ..++++|.++|+++.++..
T Consensus       101 y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         101 QYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            987    5689999999999998764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.58  E-value=0.00021  Score=58.45  Aligned_cols=93  Identities=19%  Similarity=0.077  Sum_probs=77.2

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 008025          477 DKQWLKAISFYTEAIKLNGNNATYYSNRAAAYLESGSFLQAEADCTKAINLDKKNVKAYLRRGTAREM----LGYYKEAI  552 (580)
Q Consensus       477 ~g~~~~Ai~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~----~g~~~~A~  552 (580)
                      .+|+++|+.+|+++.+..  +..++++++.  ....++++|+++++++.+.  +++.+.+++|..|..    ..++++|+
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            358999999999999874  5567777774  3467899999999999875  689999999999986    56899999


Q ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHh
Q 008025          553 EDFSYALVLEPTNKRASLSADRLRK  577 (580)
Q Consensus       553 ~~~~~al~l~p~~~~~~~~l~~l~~  577 (580)
                      ++|+++.+.  .++.+...|+.+..
T Consensus        80 ~~~~~aa~~--g~~~a~~~Lg~~y~  102 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQY  102 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHhhhhcc--CcchHHHHHHHHHH
Confidence            999999886  57888888887753