Citrus Sinensis ID: 008032

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580

MTADTLTQQNGLFVPDGDLISKNPNSISVTTNKETERRRRRRKQKKNKKASQQATLTDSNNDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAESKKKADSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLEEEEEEEEEEEEEEQIEEEELEDGIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVDLLRGQKTDRVDVTLQPEELEVMDNVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQEKDGKSKKKDFKF

cccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHccHHHHHHHcccccEEEEEccccccHHHHHHHHHcccccccccccccHHHHcccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccccHHHHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccc

cccccEEcccccEcccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccccccHHHHHHHHHHHHcccccccccccccccHHccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHcccccEEEEEEccccccHHHHEEEHcccccccccHHHHHHHHHHccccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEcHHHHHHHHHHHcccccccccccEEEccccHHHHHHccccccccHHHHHHHccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHcccccccccccEEEcccccccccccccccccEEEEccccccccccccccccccccccccEEEEEcHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccEEccc

mtadtltqqnglfvpdgdlisknpnsisvttnkETERRRRRRKQKKNKKASQQatltdsnndadnetededsqsqVAEKVTVEyvpekadlddglDDEFRKIFEKFsfhdaagsedidkrdesaqnaeskkkadsdtedeeqdsqpkekglsnKKKKLQRRMKIAELKQICSRPDVVEvwdatasdpKLLVFLKAYrntvpvprhwcqkrkflqgkrgiekqpfqlpdfIAATGIEKIRQAYIEKEDSKKLKQKQRErmqpkmgkmdiDYQVLHDAFfkyqtkpkltshgdlyhegkEFEVKLremkpgilshdlkealgmpdgapppwlinmqrygpppsyphlkipglnapippgasfgyhpggwgkppvdeygrplygdvfgihqqeqpnyeeepvdkskhwgdleeeeeeeeeeEEEEQIEEEELedgiqsvdtlsstptgvetpdvIDLRKqqrkeperplyqvleekeeriapgtllgtTHTYVVntgtqdkagAKRVDLlrgqktdrvdvtlqpeelevmDNVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQekdgkskkkdfkf

mtadtltqqnglfvpdgdlisknpnsisvttnketerrrrrrkqkknkkasqqatltdsnndadnetededsqsqvaekvtveyvpekadlddgLDDEFRKIFEKFSfhdaagsedidkrdesaqnaeskkkadsdtedeeqdsqpkekglsnkkkklQRRMKIAelkqicsrpdvVEVWDATASDPKLLVFLKAYrntvpvprhwcQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQayiekedskklkqkqrermqpkmgkmDIDYQVLHDAFFKYQTkpkltshgdlyHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEqpnyeeepvdkskHWGDLEEEEEEEEEEEEEEQIEeeeledgiqsvdtlsstptgvetpdvidlrkqqrkeperplyqvleekeeriapgtllgtthtyvvntgtqdkagakrvdllrgqktdrvdvtlqpeelevmdnvlpakyeeareeeklrsqredfsdmvaenekkrkrkmqekdgkskkkdfkf

MTADTLTQQNGLFVPDGDLISKNPNSISVttnketerrrrrrkqkknkkASQQATLtdsnndadnetededsQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAESKKKAdsdtedeeqdsqPkekglsnkkkkLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLeeeeeeeeeeeeeeqieeeeleDGIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVDLLRGQKTDRVDVTLQPEELEVMDNVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQEkdgkskkkdfkf

************************************************************************************************DEFRKIFEKFSF*******************************************************IAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYI***********************DIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLR*****IL****************PWLINMQRY*****YPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIH*****************************************************************************************IAPGTLLGTTHTYVVNTGTQ*******VDLL*************************************************************************

**********************************************************************************EYVPEKADLDDGLDDEFRKIFE***********************************************************IAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKI**************************KMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVF*****************SKH*****************************************************************************************************************TLQPEELEV***************************************************FKF

MTADTLTQQNGLFVPDGDLISKNPNSISV***********************************************AEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGS*********************************************RRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDS************PKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQ*******************************************SVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVDLLRGQKTDRVDVTLQPEELEVMDNVLPAKYE*************DFSDMVAE***********************

****TLTQQNGLFVPDGDL**********************************************************EKVTVEYVPEKADLDDGLDDEFRKIFEKFSF*******************************************SNKKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQ***********************************************************TPDVIDLRKQQRKEPERPLYQVLEEKEERIAP**LLG****************************DRVDVTLQPEELEVMDNVLPAKYEEAREEEKL****EDFSDMVAENEKKRKRK********KKK****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MTADTLTQQNGLFVPDGDLISKNPNSISVTTNxxxxxxxxxxxxxxxxxxxxxATLTDSNNDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAESKKKADSDTEDEEQDSQPKxxxxxxxxxxxxxxxxxxxxxQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHxxxxxxxxxxxxxxxxxxxxxxxxxxxxIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVDLLRGQKTDRVDVTLQPEELEVMDNVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRKMQEKDGKSKKKDFKF

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		580	2.2.26 [Sep-21-2011]
Q13435		895	Splicing factor 3B subuni	yes	no	0.887	0.575	0.497	1e-125
Q9UUI3		601	Pre-mRNA-splicing factor	yes	no	0.810	0.782	0.407	2e-91
Q02554		436	Cold sensitive U2 snRNA s	yes	no	0.455	0.605	0.339	1e-41

>sp\|Q13435\|SF3B2_HUMAN Splicing factor 3B subunit 2 OS=Homo sapiens GN=SF3B2 PE=1 SV=2	Back alignment and function desciption

 Score =  451 bits (1159), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 279/561 (49%), Positives = 368/561 (65%), Gaps = 46/561 (8%)

Query: 57  TDSNNDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHD------ 110
           ++S+ D + ++         A  V +EYV E+ ++ +     F++IFE F   D      
Sbjct: 344 SESSGDREKDSTRSRGSDSPAADVEIEYVTEEPEIYEPNFIFFKRIFEAFKLTDDVKKEK 403

Query: 111 AAGSEDIDKRDESAQNA-----ESKKKADSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIA 165
               E +DK + SA        E  K +D D+ D+EQ+ +P+   LS KK +   R  +A
Sbjct: 404 EKEPEKLDKLENSAAPKKKGFEEEHKDSDDDSSDDEQEKKPEAPKLSKKKLRRMNRFTVA 463

Query: 166 ELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQ 225
           ELKQ+ +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KRK+LQGKRGIEK PF+
Sbjct: 464 ELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIEKPPFE 523

Query: 226 LPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPK 285
           LPDFI  TGI+++R+A  EKE+ K +K K RE+++PKMGK+DIDYQ LHDAFFK+QTKPK
Sbjct: 524 LPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKWQTKPK 583

Query: 286 LTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDG-----APPPWLINMQRYGPPP 340
           LT HGDLY+EGKEFE +L+E KPG LS +L+ +LGMP G      PPPWLI MQRYGPPP
Sbjct: 584 LTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQRYGPPP 643

Query: 341 SYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQE-QPNYEEEPV 399
           SYP+LKIPGLN+PIP   SFGYH GGWGKPPVDE G+PLYGDVFG +  E Q   EEE +
Sbjct: 644 SYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKTEEEEI 703

Query: 400 DKSKHWGDLEEEEEEEEEEEEEEQIEEEE---------LEDGIQSVDTLSSTPTGVETPD 450
           D++  WG+LE  +EE  EEEEEE+ +E++          + G+ +    SS P G+ETP+
Sbjct: 704 DRTP-WGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAGMETPE 762

Query: 451 VIDLRKQQRKEP----ERP-LYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVD 505
           +I+LRK++ +E     E P L+ VL EK      G ++G+TH Y ++T    K  A    
Sbjct: 763 LIELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGPAPE-- 820

Query: 506 LLRGQKTDRVDVTLQPEELEVMDNVLPAKYEEAREEEKLRSQREDFSDMVAENEKKRKRK 565
            L+G     V+V L PEELE+    +  KYEE   E++ + ++EDFSDMVAE+  K+K+K
Sbjct: 821 -LQG-----VEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAAKQKQK 874

Query: 566 M-----QEKDGKSKK-KDFKF 580
                 Q+  G SKK K+FKF
Sbjct: 875 KRKAQPQDSRGGSKKYKEFKF 895

Subunit of the splicing factor SF3B required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA. May also be involved in the assembly of the 'E' complex. Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron.
Homo sapiens (taxid: 9606)

>sp\|Q9UUI3\|SA145_SCHPO Pre-mRNA-splicing factor sap145 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sap145 PE=1 SV=1	Back alignment and function description

>sp\|Q02554\|CUS1_YEAST Cold sensitive U2 snRNA suppressor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUS1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		580
356549367		575	PREDICTED: splicing factor 3B subunit 2-	0.986	0.994	0.802	0.0
255555981		590	Splicing factor 3B subunit, putative [Ri	0.901	0.886	0.874	0.0
356555130		575	PREDICTED: splicing factor 3B subunit 2-	0.986	0.994	0.818	0.0
356546253		577	PREDICTED: splicing factor 3B subunit 2-	0.987	0.993	0.816	0.0
449470216		580	PREDICTED: splicing factor 3B subunit 2-	0.994	0.994	0.813	0.0
224078924		585	predicted protein [Populus trichocarpa]	0.968	0.960	0.818	0.0
224113969		588	predicted protein [Populus trichocarpa]	0.994	0.981	0.802	0.0
357446557		578	Splicing factor 3B subunit [Medicago tru	0.95	0.953	0.781	0.0
356519572		557	PREDICTED: LOW QUALITY PROTEIN: splicing	0.944	0.983	0.738	0.0
357446559		523	Splicing factor 3B subunit [Medicago tru	0.853	0.946	0.843	0.0

>gi\|356549367\|ref\|XP_003543065.1\| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]	Back alignment and taxonomy information

 Score =  891 bits (2303), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/583 (80%), Positives = 520/583 (89%), Gaps = 11/583 (1%)

Query: 1   MTADTLTQQNGLFVPDGDLISKNPNSISVTTNKETERRRRRRKQKKNKKASQQATLTDSN 60
           M A+T+  QNG+     D       S +         RRRRR+++K    + +A + +S+
Sbjct: 1   MAAETIPYQNGVVASSND-------STATGKKSRENDRRRRRRKQKKNNKASEAPVPNSS 53

Query: 61  NDADNETEDEDSQSQVAEKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKR 120
            ++D+  E+ DS+ Q+ E++ +EYVPEKA+L +G+D+EFRKIFEKF+F DA   ED DK+
Sbjct: 54  EESDDAKENNDSK-QLVEQIEIEYVPEKAELVEGMDEEFRKIFEKFTFTDATALEDTDKK 112

Query: 121 DESAQNAESKKKADSDTEDEEQDSQPKEKGLSNKKKKLQRRMKIAELKQICSRPDVVEVW 180
           D S +NA + KKA+SD+E+EE D++ KEKG+SNKKKKLQRRMKIAELKQIC RPDVVEVW
Sbjct: 113 DGSEENAATNKKANSDSEEEENDNEQKEKGISNKKKKLQRRMKIAELKQICLRPDVVEVW 172

Query: 181 DATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQ 240
           DATASDPKLLVFLK+YRNTVPVPRHWCQKRKFLQGKRGIEK PFQLPDFIAATGIEKIRQ
Sbjct: 173 DATASDPKLLVFLKSYRNTVPVPRHWCQKRKFLQGKRGIEKPPFQLPDFIAATGIEKIRQ 232

Query: 241 AYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFE 300
           AYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTS GDLYHEGKEFE
Sbjct: 233 AYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSLGDLYHEGKEFE 292

Query: 301 VKLREMKPGILSHDLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF 360
           VKLREMKPG+LSH+LKEALGMP+G+PPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF
Sbjct: 293 VKLREMKPGMLSHELKEALGMPEGSPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASF 352

Query: 361 GYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLEEEEEEEEEEEE 420
           GYHPGGWGKPPVDEYGRPLYGDVFG+ QQ+QPNYEEEPVDK+KHWGDLEEEEEEEEEEEE
Sbjct: 353 GYHPGGWGKPPVDEYGRPLYGDVFGVQQQDQPNYEEEPVDKTKHWGDLEEEEEEEEEEEE 412

Query: 421 EEQIEEEELED---GIQSVDTLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEERI 477
           EE+ EE E E+   GIQSVD+LSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEE+I
Sbjct: 413 EEEEEEMEEEELEAGIQSVDSLSSTPTGVETPDVIDLRKQQRKEPERPLYQVLEEKEEKI 472

Query: 478 APGTLLGTTHTYVVNTGTQDKAGAKRVDLLRGQKTDRVDVTLQPEELEVMDNVLPAKYEE 537
           APGTLLGTTHTYVV TGTQDK+GAKRVDLLRGQKTD+VDVTLQPEELE M+NVLPAKYEE
Sbjct: 473 APGTLLGTTHTYVVGTGTQDKSGAKRVDLLRGQKTDKVDVTLQPEELEAMENVLPAKYEE 532

Query: 538 AREEEKLRSQREDFSDMVAENEKKRKRKMQEKDGKSKKKDFKF 580
           AREEEKLRSQREDFSDMVAENEKKRKRKMQEK+GKSKK+DFKF
Sbjct: 533 AREEEKLRSQREDFSDMVAENEKKRKRKMQEKEGKSKKRDFKF 575

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255555981\|ref\|XP_002519025.1\| Splicing factor 3B subunit, putative [Ricinus communis] gi\|223541688\|gb\|EEF43236.1\| Splicing factor 3B subunit, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356555130\|ref\|XP_003545890.1\| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356546253\|ref\|XP_003541544.1\| PREDICTED: splicing factor 3B subunit 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|449470216\|ref\|XP_004152814.1\| PREDICTED: splicing factor 3B subunit 2-like [Cucumis sativus] gi\|449515207\|ref\|XP_004164641.1\| PREDICTED: splicing factor 3B subunit 2-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224078924\|ref\|XP_002305682.1\| predicted protein [Populus trichocarpa] gi\|222848646\|gb\|EEE86193.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224113969\|ref\|XP_002316630.1\| predicted protein [Populus trichocarpa] gi\|222859695\|gb\|EEE97242.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357446557\|ref\|XP_003593554.1\| Splicing factor 3B subunit [Medicago truncatula] gi\|355482602\|gb\|AES63805.1\| Splicing factor 3B subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356519572\|ref\|XP_003528446.1\| PREDICTED: LOW QUALITY PROTEIN: splicing factor 3B subunit 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|357446559\|ref\|XP_003593555.1\| Splicing factor 3B subunit [Medicago truncatula] gi\|355482603\|gb\|AES63806.1\| Splicing factor 3B subunit [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		580
UNIPROTKB\|F1MC31		896	SF3B2 "Uncharacterized protein	0.686	0.444	0.541	1.1e-112
UNIPROTKB\|E9PPJ0		878	SF3B2 "Splicing factor 3B subu	0.686	0.453	0.541	1.1e-112
UNIPROTKB\|Q13435		895	SF3B2 "Splicing factor 3B subu	0.686	0.444	0.541	1.1e-112
UNIPROTKB\|F1RU38		879	SF3B2 "Uncharacterized protein	0.686	0.452	0.541	1.1e-112
UNIPROTKB\|E2RL65		895	SF3B2 "Uncharacterized protein	0.686	0.444	0.541	1.1e-112
FB\|FBgn0031493		749	CG3605 [Drosophila melanogaste	0.837	0.648	0.454	2.1e-107
ZFIN\|ZDB-GENE-070928-1		826	sf3b2 "splicing factor 3b, sub	0.824	0.578	0.456	6e-103
WB\|WBGene00021004		602	W03F9.10 [Caenorhabditis elega	0.679	0.654	0.476	3.3e-95
UNIPROTKB\|O16997		602	W03F9.10 "Protein W03F9.10" [C	0.679	0.654	0.476	3.3e-95
POMBASE\|SPAC22F8.10c		601	sap145 "U2 snRNP-associated pr	0.539	0.520	0.515	3.4e-90

UNIPROTKB\|F1MC31 SF3B2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

 Score = 1112 (396.5 bits), Expect = 1.1e-112, P = 1.1e-112
 Identities = 233/430 (54%), Positives = 293/430 (68%)

Query:   161 RMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIE 220
             R  +AELKQ+ +RPDVVE+ D TA DPKLLV LKA RN+VPVPRHWC KRK+LQGKRGIE
Sbjct:   460 RFTVAELKQLVARPDVVEMHDVTAQDPKLLVHLKATRNSVPVPRHWCFKRKYLQGKRGIE 519

Query:   221 KQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKY 280
             K PF+LPDFI  TGI+++R+A  EKE+ K +K K RE+++PKMGK+DIDYQ LHDAFFK+
Sbjct:   520 KPPFELPDFIKRTGIQEMREALQEKEEQKTMKSKMREKVRPKMGKIDIDYQKLHDAFFKW 579

Query:   281 QTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEALGMPDG-----APPPWLINMQR 335
             QTKPKLT HGDLY+EGKEFE +L+E KPG LS +L+ +LGMP G      PPPWLI MQR
Sbjct:   580 QTKPKLTIHGDLYYEGKEFETRLKEKKPGDLSDELRISLGMPVGPNAHKVPPPWLIAMQR 639

Query:   336 YGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQE-QPNY 394
             YGPPPSYP+LKIPGLN+PIP   SFGYH GGWGKPPVDE G+PLYGDVFG +  E Q   
Sbjct:   640 YGPPPSYPNLKIPGLNSPIPESCSFGYHAGGWGKPPVDETGKPLYGDVFGTNAAEFQTKT 699

Query:   395 EEEPVDKSKHWGDLXXXXXXXXXXXXXXXXXXXXXXD-G-IQSVDT-------LSSTPTG 445
             EEE +D++  WG+L                      + G I   D+        SS P G
Sbjct:   700 EEEEIDRTP-WGELEPSDEESSEEEEEEESDEDKPDETGFITPADSGLITPGGFSSVPAG 758

Query:   446 VETPDVIDLRKQQRKEP----ERP-LYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAG 500
             +ETP++I+LRK++ +E     E P L+ VL EK      G ++G+TH Y ++T    K  
Sbjct:   759 METPELIELRKKKIEEAMDGSETPQLFTVLPEKRTATVGGAMMGSTHIYDMSTVMSRKGP 818

Query:   501 AKRVDLLRGQKTDRVDVTLQPEELEVMDNVLPAKYEEAREEEKLRSQREDFSDMVAEN-- 558
             A     L+G     V+V L PEELE+    +  KYEE   E++ + ++EDFSDMVAE+  
Sbjct:   819 APE---LQG-----VEVALAPEELELDPMAMTQKYEEHVREQQAQVEKEDFSDMVAEHAA 870

Query:   559 -EKKRKRKMQ 567
              +K++KRK Q
Sbjct:   871 KQKQKKRKAQ 880

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB\|E9PPJ0 SF3B2 "Splicing factor 3B subunit 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q13435 SF3B2 "Splicing factor 3B subunit 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RU38 SF3B2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RL65 SF3B2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

FB\|FBgn0031493 CG3605 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-070928-1 sf3b2 "splicing factor 3b, subunit 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

WB\|WBGene00021004 W03F9.10 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|O16997 W03F9.10 "Protein W03F9.10" [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

POMBASE\|SPAC22F8.10c sap145 "U2 snRNP-associated protein Sap145 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		580
COG5182		429	COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA	2e-81
pfam04037		129	pfam04037, DUF382, Domain of unknown function (DUF	2e-77
pfam04046		48	pfam04046, PSP, PSP	8e-26
smart00581		54	smart00581, PSP, proline-rich domain in spliceosom	4e-24
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	7e-05

>gnl\|CDD\|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and modification]	Back alignment and domain information

 Score =  261 bits (668), Expect = 2e-81
 Identities = 133/462 (28%), Positives = 209/462 (45%), Gaps = 58/462 (12%)

Query: 22  KNPNSISVTTNKETERRRRRRKQKKNKKASQQATLTDSNNDADNETEDEDSQSQVAEKVT 81
            N N  +   N + E       ++  +K     T +    +   + + E     V ++  
Sbjct: 12  NNQNKNASVVNNKAEIAAMIDARRLEQKKKGGVTNSKGKTNKVVDAKLEKEFKDVLQRFQ 71

Query: 82  VEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNAESKKKADSDTEDEE 141
           V         +D   +  +                   R +S +      +A+ D E   
Sbjct: 72  V-------QENDTPKEITKDEKNMS-------------RMKSRKAPTIHMEAEIDDEYGF 111

Query: 142 QDSQPKEKGLSNKKKKLQR--RMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNT 199
           +D     +  S  ++K ++  + +  +LK +   P++ E  DAT  DP  L  +K   N 
Sbjct: 112 EDRMKPYREESLSRQKKRKALQHRYEQLKLVVPYPEIFEWEDATCPDPMSLNRMKGCSNG 171

Query: 200 VPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERM 259
           VPVPRHW  K ++L G    + +PF+LP  I  TGI ++R+   E+E    L+++ RER+
Sbjct: 172 VPVPRHWRSKSRYLSGHGYHKPRPFELPRHIIGTGIPQMRRMMREREAGMSLRERIRERV 231

Query: 260 QPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSHDLKEAL 319
           QPKMG +D+DY+ LHDAFF    KP L+  G+ Y E       +++ +PG +S +L+EAL
Sbjct: 232 QPKMGGLDVDYRKLHDAFFSLGPKPYLSKFGEFYEEVDNDYRFVKKKRPGAISAELREAL 291

Query: 320 GMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPP--GASFGYHPGGWGKPPVDEYGR 377
           G+  G PPPWL NMQ++G PPSYP LKIPGLN    P  G  +GY P GW +P  +    
Sbjct: 292 GIDSGTPPPWLFNMQKHGMPPSYPDLKIPGLNWAPIPLEGDVYGYQPPGWHEPLFEVGPE 351

Query: 378 PLYGDVFGIHQQEQPNYEEEPVDKSKHWGDLEEEEEEEEEEEEEEQIEE-EELEDGIQSV 436
                                       G+L + E EE   +EE+      E ED  + V
Sbjct: 352 -------------------------TAEGELLQFEAEEIYNDEEQYTRPVYENEDFEERV 386

Query: 437 DTLSSTPTGVETPDVIDLR--------KQQRKEPERPLYQVL 470
           D +S+       P  +++         K+ + + E+ LY VL
Sbjct: 387 DDVSNGGLAEFAPAAVEVAPKEDAKVTKRGKAKREKLLYSVL 428

Length = 429

>gnl\|CDD\|112836 pfam04037, DUF382, Domain of unknown function (DUF382)	Back alignment and domain information

>gnl\|CDD\|202864 pfam04046, PSP, PSP	Back alignment and domain information

>gnl\|CDD\|128850 smart00581, PSP, proline-rich domain in spliceosome associated proteins	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		580
KOG2330		500	consensus Splicing factor 3b, subunit 2 [RNA proce	100.0
COG5182		429	CUS1 Splicing factor 3b, subunit 2 [RNA processing	100.0
PF04037		129	DUF382: Domain of unknown function (DUF382) ; Inte	100.0
smart00581		54	PSP proline-rich domain in spliceosome associated	99.93
PF04046		48	PSP: PSP; InterPro: IPR006568 PSP is a proline-ric	99.89
KOG2673		485	consensus Uncharacterized conserved protein, conta	98.59

>KOG2330 consensus Splicing factor 3b, subunit 2 [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=4.6e-153  Score=1182.87  Aligned_cols=439  Identities=55%  Similarity=0.953  Sum_probs=374.4

Q ss_pred             ccceEEeecCCCCCCchhHHHHHHHHhhccCCccCCCccccchhhhhhhh--hhcc--cCCCCCchhhhcCCcccccCCh
Q 008032           78 EKVTVEYVPEKADLDDGLDDEFRKIFEKFSFHDAAGSEDIDKRDESAQNA--ESKK--KADSDTEDEEQDSQPKEKGLSN  153 (580)
Q Consensus        78 ~~v~vEyv~e~~~~~d~~~~~F~~Vf~kF~~~~~~~~e~~~~~~~~~~~~--~~~~--~~d~d~~dee~~~~~~~~~lSk  153 (580)
                      .+|+|+||.+.++++     +| +||++|+........  ..+.......  ....  ....++++++..++..+++||+
T Consensus        47 ~~~~~~~v~e~~ei~-----~f-~vf~~Fk~~~~~~~~--~e~~~~~~~~e~~~~~~~~~~~ed~~ed~~~~~~eeklsk  118 (500)
T KOG2330|consen   47 KGVTIEYVDEKIEIE-----FF-DVFERFKLQEMSEKK--FEKPDHVSISEKDDEKGFVHEAEDEDEDMKDDRIEEKLSK  118 (500)
T ss_pred             CCceEeeecchhhhH-----HH-HHHHHHhcccccccc--cccCCcceeeccCcccccccccchhhhccccccchhhhhH
Confidence            369999999998776     66 999999987732211  1111111100  0000  0000111111112234678999


Q ss_pred             HHHHHhhcCCHHHHHhhcCCCceEEeecCCCCChHHHHHHhhcCCcccCCccccchhcccccccCCCCCCCCccHHHHHh
Q 008032          154 KKKKLQRRMKIAELKQICSRPDVVEVWDATASDPKLLVFLKAYRNTVPVPRHWCQKRKFLQGKRGIEKQPFQLPDFIAAT  233 (580)
Q Consensus       154 kk~k~~~r~svaeLK~~v~~PevVE~~D~ta~DP~lLv~lKs~rN~VPVP~HW~~KR~YL~gkrgieK~pf~LP~~I~~T  233 (580)
                      ||+|++.|+|||+||++|.||+|||||||||.||.|||+||+|+|+||||+|||+||+||+|+||||||||.||+||+.|
T Consensus       119 rklRk~~r~svaeLK~~v~~pdvvE~~Dvta~dP~ll~~lK~~~n~VPVPrHW~~kr~yl~G~rg~ekppfelP~~Ik~T  198 (500)
T KOG2330|consen  119 RKLRKLLRPSVAELKQLVPYPDVVEWHDVTARDPKLLVHLKAYRNSVPVPRHWNSKRKYLSGKRGIEKPPFELPDFIKKT  198 (500)
T ss_pred             HHHHHhhcccHHHHhhcCCccceeeeeccCCCChHHHHHhhhccCCCcCchhhhhhhhhhccccccCCCCccchHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhhhhhHHHHHHHHhhhcCCCCccccchHHHHHHhhcccCCCCCCCCCcccccchhhHhhhhcCCCCCCCH
Q 008032          234 GIEKIRQAYIEKEDSKKLKQKQRERMQPKMGKMDIDYQVLHDAFFKYQTKPKLTSHGDLYHEGKEFEVKLREMKPGILSH  313 (580)
Q Consensus       234 GI~emR~a~~eke~~~sLKqk~RervqPKmGklDIDYqkLhDAFFk~qtKP~Lt~~GdlYYEGKe~e~~~~~~kPG~LS~  313 (580)
                      ||.+||++++|+|+.+|||+|||||||||||+||||||+||||||+|||||.||.|||||||||||+..+++++||.||+
T Consensus       199 gI~emR~a~~e~e~~~sLk~kmRerv~PkmGkidiDyqkLhdaFFk~qtkp~lt~~Ge~yyegke~e~~~k~k~PG~iS~  278 (500)
T KOG2330|consen  199 GIQEMREALLEREAGKSLKEKMRERVRPKMGKIDIDYQKLHDAFFKWQTKPYLTKFGELYYEGKELEAMVKEKKPGDISD  278 (500)
T ss_pred             CHHHHHHHHHhhhccccHHHHHHHhhCcccccccchHHHHHHHHHhcCCCcceeecceeeecchhHHHHHhhcCccchhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCchHHHHhHhcCCCCCCCCCccccCCCCCCCCCCccccCCCCCCCCCCCCCCcccccccccccCCCCC
Q 008032          314 DLKEALGMPDGAPPPWLINMQRYGPPPSYPHLKIPGLNAPIPPGASFGYHPGGWGKPPVDEYGRPLYGDVFGIHQQEQPN  393 (580)
Q Consensus       314 eLR~ALGm~~~~pPPWl~~MQr~GpPPSYP~LkIpGLNapiP~g~~~GyhpggwGKpPvDe~g~PLyGdvfG~~~~~~~~  393 (580)
                      +||+||||++|.||||||+|||||||||||+|||||||||||+||+||||+||||  |||++|+||||||||...++..+
T Consensus       279 eLr~aLgmp~g~pPPWl~aMqryGpPpsYPdlkIpGLNapIPeg~s~Gyh~gGWG--pVDe~g~PLygDVfG~~~p~~~~  356 (500)
T KOG2330|consen  279 ELRIALGMPVGTPPPWLIAMQRYGPPPSYPDLKIPGLNAPIPEGCSFGYHAGGWG--PVDEFGKPLYGDVFGLNIPEHHN  356 (500)
T ss_pred             HHHHHhCCCCCCCChHHHHhhhcCCCCCCCcccCCCCCCCCCcccccccccCCCc--cccccCCccchhccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999  99999999999999999888766


Q ss_pred             CCCCCC-cccCCCCCCcchhhhhhhhhhhhh-hhhhh--------hccCccccccccccCCCCCCCcccccccccCCCCC
Q 008032          394 YEEEPV-DKSKHWGDLEEEEEEEEEEEEEEQ-IEEEE--------LEDGIQSVDTLSSTPTGVETPDVIDLRKQQRKEPE  463 (580)
Q Consensus       394 ~~~e~v-~k~~~WGel~~eeeeeeeeeeeee-~~e~~--------~~~g~~~~sg~~s~~~g~etp~~~dlRK~~~~~~~  463 (580)
                      ...+++ ++ .+||+|+++++|++||.+|+| .+...        ....+.++++++++|+|+|||+.|+|||..+.++.
T Consensus       357 ~t~es~~~r-n~wgel~~e~~E~~EEreeee~~d~~~~~e~gg~~dp~d~~~~~~Lts~ptgiEtpd~iELRK~k~ee~~  435 (500)
T KOG2330|consen  357 GTKESEIER-NHWGELESEEEESSEEREEEEREDKNDASENGGAVDPADDIVPSGLTSFPTGIETPDAIELRKKKREEET  435 (500)
T ss_pred             ccccccccc-ccccccccccchhhhhhhhhhhhhhhhhhhccccCCccccccccccccCCccccChhHHHHHhhcccccc
Confidence            554444 45 599999986555544432222 11111        11125678999999999999999999999988888


Q ss_pred             CCCceeccccccccCCCcccccccEEEccCCCcCCCCccccccccCCCCCCceeecCchhhccccchhHHHHHHHHHHH
Q 008032          464 RPLYQVLEEKEERIAPGTLLGTTHTYVVNTGTQDKAGAKRVDLLRGQKTDRVDVTLQPEELEVMDNVLPAKYEEAREEE  542 (580)
Q Consensus       464 ~~LY~Vl~ek~~~~~~~~~~gs~~~Ydl~~~~~~~~~~~~~~~l~~~~~~~vdvsldp~el~~~~~~l~~~ye~~~~~~  542 (580)
                      +.||||||||.+++.+|+||||+|+|||+++++.             +++||+|||||++|+++..+|  +||+++++|
T Consensus       436 r~LYqVLpEK~t~~igg~mmgstH~Ydis~~~a~-------------k~~GV~~sL~Peeld~d~~~l--~yee~~req  499 (500)
T KOG2330|consen  436 RALYQVLPEKRTSRIGGTMMGSTHTYDISTGTAD-------------KTPGVEFSLDPEELDADGMAL--RYEEQRREQ  499 (500)
T ss_pred             HHHHHhccccccccccceeeccceEEeccccccc-------------cCCCceeecChhhhccchhhH--HHHHHHhhc
Confidence            9999999999999888889999999999986432             345799999999999988888  999999986

>COG5182 CUS1 Splicing factor 3b, subunit 2 [RNA processing and modification]	Back alignment and domain information

>PF04037 DUF382: Domain of unknown function (DUF382) ; InterPro: IPR007180 This domain is specific to the human splicing factor 3b subunit 2 and its orthologs	Back alignment and domain information

>smart00581 PSP proline-rich domain in spliceosome associated proteins	Back alignment and domain information

>PF04046 PSP: PSP; InterPro: IPR006568 PSP is a proline-rich domain of unknown function found in spliceosome associated proteins	Back alignment and domain information

>KOG2673 consensus Uncharacterized conserved protein, contains PSP domain [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		580
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 91/612 (14%), Positives = 180/612 (29%), Gaps = 195/612 (31%)

Query: 63  ADNETED-EDSQSQVAEKVTVEYVPEKADLDDG-------LDDEFRKIFEKFSFHDAAGS 114
            + + +D +D    +  K  ++++    D   G       L  +  ++ +KF        
Sbjct: 31  DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV------- 83

Query: 115 EDIDKRD----ESAQNAESKKKADSDTEDEEQ------DSQPKEKG-LSNKKKKLQRRMK 163
           E++ + +     S    E ++ +       EQ      D+Q   K  +S  +  L+ R  
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 164 IAELKQICSRPDVVEV---------WDA--TASDPKLLVFLKAYRNTVPVPRHW-----C 207
           + EL+      +V+ +         W A       K+   +            W     C
Sbjct: 144 LLELR---PAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKM-------DFKIFWLNLKNC 192

Query: 208 QKR----KFLQG-KRGIEKQPFQLPDFIAATGIEKIRQAYIEKEDSKKLKQKQRERMQPK 262
                  + LQ     I+       D  +     K+R   I+ E  + LK K  E     
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNI---KLRIHSIQAELRRLLKSKPYENC--- 246

Query: 263 MGKMDI-----DYQVLHDAFFKYQTKPKLTSHG----DLYHEGKEFEVKLREMKPGILSH 313
              + +     + +   +AF     K  LT+      D         + L      +   
Sbjct: 247 ---LLVLLNVQNAKAW-NAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 314 DLKE----ALGM-PDGAPP------PWLINM--QRYGPPPS----YPHLKIPGLNAPIPP 356
           ++K      L   P   P       P  +++  +      +    + H+    L   I  
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII-- 359

Query: 357 GASFGYHPGGWGKPPVDEYGRPLYGD--VFGIHQQEQPNYEEEPVDK---SKHWGDLEEE 411
            +S         +P   EY R ++    VF       P      +     S  W D+ + 
Sbjct: 360 ESSLNVL-----EP--AEY-RKMFDRLSVF-------P--PSAHIPTILLSLIWFDVIKS 402

Query: 412 EEEEEEEE------------------------EEEQIEEE-ELEDG-IQSVDTLSSTPTG 445
           +      +                         + ++E E  L    +   +   +  + 
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 446 VETPDVID----------LRKQQRKEPE---RPLYQ---VLEEK-----EERIAPGTLLG 484
              P  +D          L+  +  E     R ++     LE+K         A G++L 
Sbjct: 463 DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN 522

Query: 485 TTHT------YVVNTGTQDKAGAKRVD------------LLRGQKTDRVDVTLQPEELEV 526
           T         Y+ +    D    + V+            L+  + TD + + L  E+  +
Sbjct: 523 TLQQLKFYKPYICD---NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI 579

Query: 527 MDNVLPAKYEEA 538
                   +EEA
Sbjct: 580 --------FEEA 583

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00